[us-commits] [ehb54/ultrascan3] 801214: GMP | 1. EXP.: AProfile | Reports -- important bug...

Wed Dec 15 14:25:53 MST 2021

  Branch: refs/heads/saeed-dev
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 80121451a83e9a814acacb9b2f9e9797e44aa329
      https://github.com/ehb54/ultrascan3/commit/80121451a83e9a814acacb9b2f9e9797e44aa329
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-03 (Wed, 03 Nov 2021)

  Changed paths:
    M gui/us_report_gui.cpp

  Log Message:
  -----------
  GMP | 1. EXP.: AProfile | Reports -- important bug (which led to crash) fixed for MWL cases when browsing different channel's triples with different report parameters...


  Commit: 8b1069d36eb5048b38f7ac94528b97b78c4482e2
      https://github.com/ehb54/ultrascan3/commit/8b1069d36eb5048b38f7ac94528b97b78c4482e2
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-03 (Wed, 03 Nov 2021)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  GMP | 1. EXP.: AProfile | Reports : Replicates -- when identifying the reference ReportGMP for a given replicate group, also apply its paramaters to all the triples in the reference channel (the MWL case for the reference channel)...


  Commit: be228c93c7e29df9a70c51a9f4e3f6e7c33cbf0d
      https://github.com/ehb54/ultrascan3/commit/be228c93c7e29df9a70c51a9f4e3f6e7c33cbf0d
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-03 (Wed, 03 Nov 2021)

  Changed paths:
    M gui/us_scan_excl_gui.cpp
    M gui/us_scan_excl_gui.h

  Log Message:
  -----------
  GMP | 1. EXP.: AProfile | Gen : Scans Exclusions -- added per-channel read-only && dynamically updated fields ffor remaining # scans when scan_begin && scan_end counter values are changed...


  Commit: 320163b9de20536e41b8d8758e5c20797bd873c1
      https://github.com/ehb54/ultrascan3/commit/320163b9de20536e41b8d8758e5c20797bd873c1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-03 (Wed, 03 Nov 2021)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp

  Log Message:
  -----------
  GMP | 1. EXP.: AProfile | Gen:Scans.Excl. -- bug fixed for update in the channels' max scan number when it's changed in previous tabs - Ranges &|| Speeds...


  Commit: 700343f38ef70fe9e45763d3774f2c4dee4d906e
      https://github.com/ehb54/ultrascan3/commit/700343f38ef70fe9e45763d3774f2c4dee4d906e
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-03 (Wed, 03 Nov 2021)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M utils/us_ana_profile.cpp

  Log Message:
  -----------
  GMP | 1. EXP.: AProfile | Gen:Scans.Excl. -- bug fixed for combined optics case (UV/vis + Interf.), to establish one-to-one correspondednce btw list of channels && excl. begin


  Commit: 71ed4616254b99dc8efe472d6a144f3e81de9852
      https://github.com/ehb54/ultrascan3/commit/71ed4616254b99dc8efe472d6a144f3e81de9852
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-04 (Thu, 04 Nov 2021)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M utils/us_ana_profile.cpp
    M utils/us_ana_profile.h

  Log Message:
  -----------
  GMP | 1. EXP.: AProfile | Gen : Replicate Groups -- propagate replicate groups setting in Gen tab (in addition to Reports ) to also 2DSA && PCSA settings, next 2 tabs


  Commit: 686d01fc2b49539cd2e8085e4ae867003205e1ae
      https://github.com/ehb54/ultrascan3/commit/686d01fc2b49539cd2e8085e4ae867003205e1ae
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-05 (Fri, 05 Nov 2021)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M utils/us_ana_profile.cpp
    M utils/us_ana_profile.h

  Log Message:
  -----------
  GMP | 1. EXP.: AProfile | Gen : Replicate Groups -- changed the way replicate group reports are saved: for MWL cases, use only overlapping wavelengths in the replicate group, to make same-wavelength ReportGMPs the same (based on the corresponding reference rpeortGMP)...


  Commit: d1ac12430ec302aac3988a085c51f1d7fa3489bf
      https://github.com/ehb54/ultrascan3/commit/d1ac12430ec302aac3988a085c51f1d7fa3489bf
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-05 (Fri, 05 Nov 2021)

  Changed paths:
    M gui/us_scan_excl_gui.cpp

  Log Message:
  -----------
  GMP | 1. EXP.: AProfile | Gen : Scans Exclusions -- set per-channel beg|end counter limits so that remaining #scans is >10...


  Commit: 9c164efaafa77a0c41815a6f2125595bd2b06e07
      https://github.com/ehb54/ultrascan3/commit/9c164efaafa77a0c41815a6f2125595bd2b06e07
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-05 (Fri, 05 Nov 2021)

  Changed paths:
    M gui/us_report_gui.cpp
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M utils/us_report_gmp.cpp
    M utils/us_report_gmp.h

  Log Message:
  -----------
  GMP | 1. EXP.: AProfile | Gen : Reports -- some differencies in the Gui., default parms & reportItems for Interference vs. UV/vis reportGMPs...


  Commit: d05294864595f5bb44f86a1369b7d4f55774a9ed
      https://github.com/ehb54/ultrascan3/commit/d05294864595f5bb44f86a1369b7d4f55774a9ed
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-13 (Sat, 13 Nov 2021)

  Changed paths:
    M gui/us_report_gui.cpp
    M gui/us_report_gui.h
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M utils/us_report_gmp.cpp
    M utils/us_report_gmp.h

  Log Message:
  -----------
  GMP | 1. EXP.: AProfile | Gen : Report Masks -- report masks on per-triple basis implemented into existing per-triple basis GMP Report settings in 7. AProfile; simple solution allowing for handling Apply to all wvls mask settings within the channel && copying masks settings for overlapping wvls if replicate groups are defined; auroflowReport table extended for reportMaskJson field && corresponfdng changes made to stored procs; correctly write/read to/from DB...


  Commit: 2c4ebad9aa15884e1b0ecf5985de2b861c337f12
      https://github.com/ehb54/ultrascan3/commit/2c4ebad9aa15884e1b0ecf5985de2b861c337f12
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-14 (Sun, 14 Nov 2021)

  Changed paths:
    M gui/libus_gui.pro
    A gui/us_report_general_gui.cpp
    A gui/us_report_general_gui.h
    M gui/us_scan_excl_gui.h
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h

  Log Message:
  -----------
  GMP | 1. EXP.: AProfile | Gen : General Report Settings - a tree defining level of detail represention of the  procotol settings in the report PDF (section 1)...


  Commit: af9599f2f5c319cd2beb2c17786715dc80d33bee
      https://github.com/ehb54/ultrascan3/commit/af9599f2f5c319cd2beb2c17786715dc80d33bee
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-15 (Mon, 15 Nov 2021)

  Changed paths:
    M gui/us_report_general_gui.cpp
    M gui/us_report_general_gui.h
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M utils/us_ana_profile.cpp
    M utils/us_ana_profile.h

  Log Message:
  -----------
  GMP | 1. EXP.: AProfile | Gen : General Report Settings - progress on the tree parameters, Gui and internal structure; 3-level JSON is used in DB, internal structures && Gui...


  Commit: 7bf80cc386402f95a3bdaa2dbdbc9c87c492d249
      https://github.com/ehb54/ultrascan3/commit/7bf80cc386402f95a3bdaa2dbdbc9c87c492d249
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-15 (Mon, 15 Nov 2021)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  GMP | 1. EXP.: AProfile | Gen : General Report Settings - write /read the general report mask JSON settings to/from the new column 'reportMask' of the analysisprofile table...


  Commit: 4cd7d04787be34ed4eae38b60f246296f5f24cb9
      https://github.com/ehb54/ultrascan3/commit/4cd7d04787be34ed4eae38b60f246296f5f24cb9
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-15 (Mon, 15 Nov 2021)

  Changed paths:
    M gui/us_report_general_gui.cpp
    M gui/us_report_general_gui.h

  Log Message:
  -----------
  GMP | 1. EXP.: AProfile | Gen : General Report Settings - interactive change in the tree checkState (children vs parent)...


  Commit: d1b1ad7e111efa18fca1803f785a619ccc715d7e
      https://github.com/ehb54/ultrascan3/commit/d1b1ad7e111efa18fca1803f785a619ccc715d7e
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-17 (Wed, 17 Nov 2021)

  Changed paths:
    M gui/us_report_general_gui.cpp
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_autoflow_reports/us_autoflow_reports.cpp
    M programs/us_autoflow_reports/us_autoflow_reports.h
    M utils/us_ana_profile.cpp

  Log Message:
  -----------
  GMP | 6. REPORT /-


  Commit: b63b939d23e84d7cbd227f37e34d22cd402058b9
      https://github.com/ehb54/ultrascan3/commit/b63b939d23e84d7cbd227f37e34d22cd402058b9
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-18 (Thu, 18 Nov 2021)

  Changed paths:
    M programs/us_autoflow_reports/us_autoflow_reports.cpp
    M programs/us_autoflow_reports/us_autoflow_reports.h

  Log Message:
  -----------
  GMP | 6. REPORT : General Report Settings -- some cleanup for : accept DB's JSON settings for report description (section 1) and generate corresponding PDF


  Commit: 74cd35873fda862bbbedf8825060d906bbbe7113
      https://github.com/ehb54/ultrascan3/commit/74cd35873fda862bbbedf8825060d906bbbe7113
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-22 (Mon, 22 Nov 2021)

  Changed paths:
    M gui/us_select_item.cpp
    M programs/us_autoflow_reports/us_autoflow_reports.h
    A programs/us_reporter_gmp/us_reporter_gmp.cpp
    A programs/us_reporter_gmp/us_reporter_gmp.h
    A programs/us_reporter_gmp/us_reporter_gmp.pro
    A programs/us_reporter_gmp/us_reporter_gmp_main.cpp

  Log Message:
  -----------
  US_Reporter_GMP -- started to work on a stand-alone GUI for report generator for GMP runs...


  Commit: fdb1349d6d5c8c86faaf900affccaadf54740b79
      https://github.com/ehb54/ultrascan3/commit/fdb1349d6d5c8c86faaf900affccaadf54740b79
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-22 (Mon, 22 Nov 2021)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_reporter_gmp/us_reporter_gmp.pro

  Log Message:
  -----------
  US_Reporter_GMP -- [progress on] work on a stand-alone GUI for report generator for GMP runs...


  Commit: 429746b04ed4c36ef705c221b007683f20d6c8a8
      https://github.com/ehb54/ultrascan3/commit/429746b04ed4c36ef705c221b007683f20d6c8a8
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-24 (Wed, 24 Nov 2021)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M utils/us_ana_profile.cpp
    M utils/us_report_gmp.h

  Log Message:
  -----------
  US_Reporter_GMP -- lots of progress on the stand-alone GMP Report generator...


  Commit: b74c1bdf6c2affde5ddad5ccfa5ea48e140a2325
      https://github.com/ehb54/ultrascan3/commit/b74c1bdf6c2affde5ddad5ccfa5ea48e140a2325
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2021-11-24 (Wed, 24 Nov 2021)

  Changed paths:
    A admin/shmnew/main.cpp
    A admin/shmnew/shmnew.pro

  Log Message:
  -----------
  alternate shm tests


  Commit: 2cbc4813670f3a939e5b59f2cbf929e66e175e1c
      https://github.com/ehb54/ultrascan3/commit/2cbc4813670f3a939e5b59f2cbf929e66e175e1c
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-24 (Wed, 24 Nov 2021)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  US_Reporter_GMP -- show progress while retrieving protcol/analysis/report parms && generating PDF report...


  Commit: 9374e8673f2edd30e6dd77649c697cf5da8339cd
      https://github.com/ehb54/ultrascan3/commit/9374e8673f2edd30e6dd77649c697cf5da8339cd
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-24 (Wed, 24 Nov 2021)

  Changed paths:
    M gui/us_report_gui.cpp

  Log Message:
  -----------
  GMP: AProlfile: ReportItems -- exchange places 'fraction of total' and 'tolerance' for consistency...


  Commit: 12dc2e326b2d4e4a232a078db9b72bd4db4aad90
      https://github.com/ehb54/ultrascan3/commit/12dc2e326b2d4e4a232a078db9b72bd4db4aad90
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2021-11-24 (Wed, 24 Nov 2021)

  Changed paths:
    A admin/shm_ipc/main.cpp
    A admin/shm_ipc/shm_ipc.pro
    A admin/shm_open/main.cpp
    A admin/shm_open/shm_open.pro
    A admin/shm_open/shmnew.pro
    R admin/shmnew/main.cpp
    R admin/shmnew/shmnew.pro

  Log Message:
  -----------
  shm shm_open and sysV ipc versions for testing


  Commit: ddb7a9657f551d150cf820a12887e58605341603
      https://github.com/ehb54/ultrascan3/commit/ddb7a9657f551d150cf820a12887e58605341603
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2021-11-24 (Wed, 24 Nov 2021)

  Changed paths:
    M admin/shm_ipc/main.cpp
    M admin/shm_open/main.cpp
    M utils/us_global.cpp
    M utils/us_global.h

  Log Message:
  -----------
  1st test version


  Commit: e466839802bf10cf8e5420c780ab76d72e2f80e1
      https://github.com/ehb54/ultrascan3/commit/e466839802bf10cf8e5420c780ab76d72e2f80e1
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2021-11-26 (Fri, 26 Nov 2021)

  Changed paths:
    M gui/us_report_gui.cpp
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  merge master before test deploy


  Commit: b00727c01f50cacb83882c5b66010a316deb58d1
      https://github.com/ehb54/ultrascan3/commit/b00727c01f50cacb83882c5b66010a316deb58d1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-28 (Sun, 28 Nov 2021)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.cpp

  Log Message:
  -----------
  GMP: ANALYSIS -- added more debug statements for debugging...


  Commit: 83f3038f133fd3d06ace6cb6753626b83ac32341
      https://github.com/ehb54/ultrascan3/commit/83f3038f133fd3d06ace6cb6753626b83ac32341
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-29 (Mon, 29 Nov 2021)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_reporter_gmp/us_reporter_gmp.pro

  Log Message:
  -----------
  US_Reporter_GMP -- progress towards automated triples processing before generating Part2 of the GMP report: loop over triples, data load, model & noises load, simulating models; ...


  Commit: 38063b909fba8f0c044792da18118b3dee696783
      https://github.com/ehb54/ultrascan3/commit/38063b909fba8f0c044792da18118b3dee696783
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-29 (Mon, 29 Nov 2021)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  US_Reporter_GMP -- [more progress on] progress towards automated triples processing before generating Part2 of the GMP report: loop over triples, data load, model & noises load, simulating models; ...


  Commit: a741c99228568a00dbedbbf20b81da911640e1b5
      https://github.com/ehb54/ultrascan3/commit/a741c99228568a00dbedbbf20b81da911640e1b5
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2021-11-29 (Mon, 29 Nov 2021)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_reporter_gmp/us_reporter_gmp.pro

  Log Message:
  -----------
  Merge pull request #18 from ehb54/master

Alexey's latest updates


  Commit: 6de21a9e39a327f6678c8803c5efd259a4fd374d
      https://github.com/ehb54/ultrascan3/commit/6de21a9e39a327f6678c8803c5efd259a4fd374d
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-29 (Mon, 29 Nov 2021)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  US_Reporter_GMP -- [more progress on] progress towards automated triples processing before generating Part2 of the GMP report: loop over triples, data load, model & noises load, simulating models; NOW prints all 2DSA analyses results on the combined PDF...


  Commit: 63944a15195c8adc20dc63ea2bf60bfa1069b5ec
      https://github.com/ehb54/ultrascan3/commit/63944a15195c8adc20dc63ea2bf60bfa1069b5ec
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2021-11-30 (Tue, 30 Nov 2021)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  Merge pull request #19 from ehb54/master

US_Reporter_GMP -- [more progress on] progress towards automated trip…


  Commit: 97325c4420eabc1060f43cf0421c5d73813aa140
      https://github.com/ehb54/ultrascan3/commit/97325c4420eabc1060f43cf0421c5d73813aa140
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-11-30 (Tue, 30 Nov 2021)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  US_Reporter_GMP -- [more progress on] progress towards automated triples processing before generating Part2 of the GMP report: loop over triples, data load, model & noises load, simulating models; NOW prints all 2DSA analyses results on the combined PDF; formatting ...


  Commit: a08026a8953bea80b4f08f8559681ff6f40efd4a
      https://github.com/ehb54/ultrascan3/commit/a08026a8953bea80b4f08f8559681ff6f40efd4a
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2021-12-01 (Wed, 01 Dec 2021)

  Changed paths:
    A admin/shm_ipc/main.cpp
    A admin/shm_ipc/shm_ipc.pro
    A admin/shm_open/main.cpp
    A admin/shm_open/shm_open.pro
    A admin/shm_open/shmnew.pro
    M utils/us_global.cpp
    M utils/us_global.h

  Log Message:
  -----------
  Merge pull request #20 from ehb54/shmupdate

Shmupdate


  Commit: deff537485bea59e64c21dae917e266295b97b09
      https://github.com/ehb54/ultrascan3/commit/deff537485bea59e64c21dae917e266295b97b09
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-12-02 (Thu, 02 Dec 2021)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.pro
    M programs/us_com_project/us_com_project.pro
    M programs/us_com_project_academic/us_com_project_academic.pro
    M programs/us_fematch/us_fematch.pro
    M programs/us_fematch/us_resplot_fem.cpp
    M programs/us_fematch/us_resplot_fem.h
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  US_Reporter_GMP -- testing plots inclusion into combined GMP PDF report when cycling over the triples; some plots are in PDF...


  Commit: 3e1dec7138aad24e483f89e2ebc9b38e3d11f11e
      https://github.com/ehb54/ultrascan3/commit/3e1dec7138aad24e483f89e2ebc9b38e3d11f11e
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-12-02 (Thu, 02 Dec 2021)

  Changed paths:
    A admin/shm_ipc/main.cpp
    A admin/shm_ipc/shm_ipc.pro
    A admin/shm_open/main.cpp
    A admin/shm_open/shm_open.pro
    A admin/shm_open/shmnew.pro
    M utils/us_global.cpp
    M utils/us_global.h

  Log Message:
  -----------
  Merge branch 'master' of github.com:ehb54/ultrascan3


  Commit: a71905fdc605166a7892c35e8342b101ca57a89f
      https://github.com/ehb54/ultrascan3/commit/a71905fdc605166a7892c35e8342b101ca57a89f
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2021-12-03 (Fri, 03 Dec 2021)

  Changed paths:
    A admin/codeql/docker/local.pri.gui
    A admin/codeql/docker/local.pri.mpi
    A admin/codeql/docker/local.pri.somo

  Log Message:
  -----------
  codeql : docker image local.pri for gui,mpi,somo


  Commit: 1030efe534aba70ef0da38e4ab4f0f9f97e1f794
      https://github.com/ehb54/ultrascan3/commit/1030efe534aba70ef0da38e4ab4f0f9f97e1f794
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2021-12-03 (Fri, 03 Dec 2021)

  Changed paths:
    A admin/codeql/docker/docker/Dockerfile

  Log Message:
  -----------
  codeql: docker : dockerfile


  Commit: 4ab245576ed2d1eb7050e7124e986b9277b3d32b
      https://github.com/ehb54/ultrascan3/commit/4ab245576ed2d1eb7050e7124e986b9277b3d32b
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2021-12-04 (Sat, 04 Dec 2021)

  Changed paths:
    A .github/workflows/codeql-analysis.yml

  Log Message:
  -----------
  Create codeql-analysis.yml


  Commit: 514b5ca5529a45e357b02564ea9c67fe13d28c38
      https://github.com/ehb54/ultrascan3/commit/514b5ca5529a45e357b02564ea9c67fe13d28c38
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2021-12-04 (Sat, 04 Dec 2021)

  Changed paths:
    M .github/workflows/codeql-analysis.yml

  Log Message:
  -----------
  Update codeql-analysis.yml

add LD_PRELOAD to make
assume relative to clone


  Commit: 106b19a18c8cf4b6d3c31d80d824e0c60572c7a8
      https://github.com/ehb54/ultrascan3/commit/106b19a18c8cf4b6d3c31d80d824e0c60572c7a8
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2021-12-04 (Sat, 04 Dec 2021)

  Changed paths:
    M .github/workflows/codeql-analysis.yml

  Log Message:
  -----------
  codeql : 1st try multiple jobs


  Commit: 33f0e983a7be7a4d28627c1c7ee8ebe1ed971012
      https://github.com/ehb54/ultrascan3/commit/33f0e983a7be7a4d28627c1c7ee8ebe1ed971012
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2021-12-04 (Sat, 04 Dec 2021)

  Changed paths:
    M .github/workflows/codeql-analysis.yml

  Log Message:
  -----------
  codeql : analyze gui (1st couple of compiles) & mpi


  Commit: 717b25811462b7004326e45f504e8ed55519c357
      https://github.com/ehb54/ultrascan3/commit/717b25811462b7004326e45f504e8ed55519c357
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2021-12-04 (Sat, 04 Dec 2021)

  Changed paths:
    M .github/workflows/codeql-analysis.yml

  Log Message:
  -----------
  codeql : analyze gui (1st couple of compiles) & mpi


  Commit: 16976985d246ad7587dbc13f1da2f9f6e6ff0d8f
      https://github.com/ehb54/ultrascan3/commit/16976985d246ad7587dbc13f1da2f9f6e6ff0d8f
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2021-12-04 (Sat, 04 Dec 2021)

  Changed paths:
    M .github/workflows/codeql-analysis.yml

  Log Message:
  -----------
  codeql : analyze gui (all)


  Commit: 260fbfde7cf9f6373738057bed7ccb5f67af724a
      https://github.com/ehb54/ultrascan3/commit/260fbfde7cf9f6373738057bed7ccb5f67af724a
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-12-05 (Sun, 05 Dec 2021)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  US_Reporter_GMP -- all possible 2D plots are included into combined PDF report; no 3D plots for now...


  Commit: 10ed0c05867cac07efecc2eda96f2a22ae40147f
      https://github.com/ehb54/ultrascan3/commit/10ed0c05867cac07efecc2eda96f2a22ae40147f
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-12-05 (Sun, 05 Dec 2021)

  Changed paths:
    A .github/workflows/codeql-analysis.yml
    A admin/codeql/docker/docker/Dockerfile
    A admin/codeql/docker/local.pri.gui
    A admin/codeql/docker/local.pri.mpi
    A admin/codeql/docker/local.pri.somo

  Log Message:
  -----------
  Merge branch 'master' of github.com:ehb54/ultrascan3


  Commit: c748da5fa307f95b01d22f7312edc9b3c8645696
      https://github.com/ehb54/ultrascan3/commit/c748da5fa307f95b01d22f7312edc9b3c8645696
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-12-06 (Mon, 06 Dec 2021)

  Changed paths:
    M programs/us_com_project/us_com_project_gui.cpp

  Log Message:
  -----------
  GMP Program: Exit -- [potential] fix for proper closure of the program's process upon pressing 'Exit' or X ...


  Commit: cb5585fe17a86d2d5aca5f67230bf663a2cd8733
      https://github.com/ehb54/ultrascan3/commit/cb5585fe17a86d2d5aca5f67230bf663a2cd8733
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-12-07 (Tue, 07 Dec 2021)

  Changed paths:
    M gui/us_plot3d.cpp
    M gui/us_plot3d.h
    M programs/us_fematch/us_plot_control_fem.cpp
    M programs/us_fematch/us_plot_control_fem.h
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  US_Reporter_GMP -- nwo 3D plots are included into combined GMP report...


  Commit: 5df25a7d2502aeff7d8a39ce7398fed7ecac85a7
      https://github.com/ehb54/ultrascan3/commit/5df25a7d2502aeff7d8a39ce7398fed7ecac85a7
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2021-12-07 (Tue, 07 Dec 2021)

  Changed paths:
    M .github/workflows/codeql-analysis.yml

  Log Message:
  -----------
  update codeql analysis 2 cores, 4 parallel tasks


  Commit: 4fbc7663a4cbf03c03223f1df18ed22269501a65
      https://github.com/ehb54/ultrascan3/commit/4fbc7663a4cbf03c03223f1df18ed22269501a65
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2021-12-07 (Tue, 07 Dec 2021)

  Changed paths:
    A admin/codeql/docker/dockerdev/Dockerfile

  Log Message:
  -----------
  codeql: dockerdev dockerfile for cli testing


  Commit: 85a1894476220226c695ae66082363811a384ba5
      https://github.com/ehb54/ultrascan3/commit/85a1894476220226c695ae66082363811a384ba5
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2021-12-07 (Tue, 07 Dec 2021)

  Changed paths:
    M us_somo/develop/src/us_hydrodyn_beads.cpp
    M us_somo/develop/src/us_hydrodyn_core.cpp
    M us_somo/develop/src/us_hydrodyn_grpy.cpp
    M us_somo/develop/src/us_hydrodyn_load.cpp
    M us_somo/develop/src/us_hydrodyn_pat.cpp
    M us_somo/develop/src/us_hydrodyn_saxs.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_hplc.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_hplc_util.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_iqq.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_iqq_bead_model.cpp
    M us_somo/develop/src/us_hydrodyn_supc.cpp
    M us_somo/develop/src/us_hydrodyn_zeno.cpp
    M us_somo/develop/src/us_lm.cpp
    M us_somo/develop/src/us_math.cpp
    M us_somo/develop/src/us_matrix.cpp
    M us_somo/develop/src/us_saxs_util_asab1.cpp
    M us_somo/develop/src/us_saxs_util_hydro.cpp
    M us_somo/develop/src/us_saxs_util_hydro_asab1_hydro.cpp
    M us_somo/develop/src/us_saxs_util_hydro_supc_hydro.cpp
    M us_somo/develop/src/us_saxs_util_hydro_zeno_hydro.cpp
    M us_somo/develop/src/us_saxs_util_iqq_pdb.cpp
    M us_somo/develop/src/us_saxs_util_loads.cpp
    M us_somo/develop/src/us_vvv.cpp

  Log Message:
  -----------
  codeql issue fixes somo


  Commit: 7d2bb3b8e4b4749f90b069c746d70ad446287654
      https://github.com/ehb54/ultrascan3/commit/7d2bb3b8e4b4749f90b069c746d70ad446287654
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2021-12-07 (Tue, 07 Dec 2021)

  Changed paths:
    M .github/workflows/codeql-analysis.yml

  Log Message:
  -----------
  codeql include somo analysis


  Commit: 26ae12b9fd6f90663034634fdddd42b7491b11f4
      https://github.com/ehb54/ultrascan3/commit/26ae12b9fd6f90663034634fdddd42b7491b11f4
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-12-07 (Tue, 07 Dec 2021)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  GMP | 4. EDIT -- a bug fixed for FITMEN_AUTO stage, automatic removal of spurious FM-models after selecting a single meniscus position ...


  Commit: 3f8f70610a4fd26206428be105751ef67a562967
      https://github.com/ehb54/ultrascan3/commit/3f8f70610a4fd26206428be105751ef67a562967
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-12-07 (Tue, 07 Dec 2021)

  Changed paths:
    M .github/workflows/codeql-analysis.yml
    A admin/codeql/docker/dockerdev/Dockerfile
    M us_somo/develop/src/us_hydrodyn_beads.cpp
    M us_somo/develop/src/us_hydrodyn_core.cpp
    M us_somo/develop/src/us_hydrodyn_grpy.cpp
    M us_somo/develop/src/us_hydrodyn_load.cpp
    M us_somo/develop/src/us_hydrodyn_pat.cpp
    M us_somo/develop/src/us_hydrodyn_saxs.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_hplc.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_hplc_util.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_iqq.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_iqq_bead_model.cpp
    M us_somo/develop/src/us_hydrodyn_supc.cpp
    M us_somo/develop/src/us_hydrodyn_zeno.cpp
    M us_somo/develop/src/us_lm.cpp
    M us_somo/develop/src/us_math.cpp
    M us_somo/develop/src/us_matrix.cpp
    M us_somo/develop/src/us_saxs_util_asab1.cpp
    M us_somo/develop/src/us_saxs_util_hydro.cpp
    M us_somo/develop/src/us_saxs_util_hydro_asab1_hydro.cpp
    M us_somo/develop/src/us_saxs_util_hydro_supc_hydro.cpp
    M us_somo/develop/src/us_saxs_util_hydro_zeno_hydro.cpp
    M us_somo/develop/src/us_saxs_util_iqq_pdb.cpp
    M us_somo/develop/src/us_saxs_util_loads.cpp
    M us_somo/develop/src/us_vvv.cpp

  Log Message:
  -----------
  Merge branch 'master' of github.com:ehb54/ultrascan3


  Commit: f3a50d419d3f6dd222235563700f97bd7531a4fe
      https://github.com/ehb54/ultrascan3/commit/f3a50d419d3f6dd222235563700f97bd7531a4fe
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2021-12-08 (Wed, 08 Dec 2021)

  Changed paths:
    A README.md

  Log Message:
  -----------
  Create README.md


  Commit: 2568b31db65c2bb0166981b22c38d4c626be20a8
      https://github.com/ehb54/ultrascan3/commit/2568b31db65c2bb0166981b22c38d4c626be20a8
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2021-12-08 (Wed, 08 Dec 2021)

  Changed paths:
    M README.md

  Log Message:
  -----------
  Update README.md


  Commit: 7707206ac9fda0210c580504aa33761c61a824dc
      https://github.com/ehb54/ultrascan3/commit/7707206ac9fda0210c580504aa33761c61a824dc
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2021-12-08 (Wed, 08 Dec 2021)

  Changed paths:
    M README.md

  Log Message:
  -----------
  Update README.md


  Commit: e937d4e7e0bbf0c8df6c1cea34bf4c9c92cd881d
      https://github.com/ehb54/ultrascan3/commit/e937d4e7e0bbf0c8df6c1cea34bf4c9c92cd881d
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2021-12-08 (Wed, 08 Dec 2021)

  Changed paths:
    M README.md

  Log Message:
  -----------
  Update README.md


  Commit: c02df5964fc003787e2ee4b265e79f9881b00a03
      https://github.com/ehb54/ultrascan3/commit/c02df5964fc003787e2ee4b265e79f9881b00a03
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2021-12-08 (Wed, 08 Dec 2021)

  Changed paths:
    M README.md

  Log Message:
  -----------
  Update README.md


  Commit: 1eba7e062559bcfc44e1d624655f674a5b34b114
      https://github.com/ehb54/ultrascan3/commit/1eba7e062559bcfc44e1d624655f674a5b34b114
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2021-12-08 (Wed, 08 Dec 2021)

  Changed paths:
    M README.md

  Log Message:
  -----------
  Update README.md


  Commit: 579dee8cef78864eee0a0a368f1de09c5823eb43
      https://github.com/ehb54/ultrascan3/commit/579dee8cef78864eee0a0a368f1de09c5823eb43
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-12-08 (Wed, 08 Dec 2021)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp

  Log Message:
  -----------
  GMP | 4. ANALYSIS | FITMEN_AUTO -- a small bug causing program crash (and looping into the FITMEN_AUTO stage indefinitely) after FM-models have been automatically removed at the FITMEN_AUTO stage...


  Commit: eaaeff781bbe3ca85dac2c4f324e5754dd95edcd
      https://github.com/ehb54/ultrascan3/commit/eaaeff781bbe3ca85dac2c4f324e5754dd95edcd
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-12-08 (Wed, 08 Dec 2021)

  Changed paths:
    A README.md

  Log Message:
  -----------
  Merge branch 'master' of github.com:ehb54/ultrascan3


  Commit: cc9e395c91ae1aab9c45b29521c97a1fb68f637f
      https://github.com/ehb54/ultrascan3/commit/cc9e395c91ae1aab9c45b29521c97a1fb68f637f
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-12-09 (Thu, 09 Dec 2021)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP Reporter -- bugs fixed for proper trees cleaning && Protocol/AProfile internal structures when other GMP run is uploaded after previous GMP run was treated....


  Commit: 329d1b7bd2bfcd7df7161a85c0e5636a2ac5f063
      https://github.com/ehb54/ultrascan3/commit/329d1b7bd2bfcd7df7161a85c0e5636a2ac5f063
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-12-09 (Thu, 09 Dec 2021)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP Reporter -- a bugs fixed for correctly parse edited (gui tree-based) rpeort MAsks Jsons...


  Commit: 0631869ebd50fd6260673e68cd56d9bce4c2ace0
      https://github.com/ehb54/ultrascan3/commit/0631869ebd50fd6260673e68cd56d9bce4c2ace0
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-12-10 (Fri, 10 Dec 2021)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  GMP Reporter : per-triple-parms-tree (lower part) -- parse edited tree JSON into internal structures read during generating Part 2 of the combined report ...


  Commit: 6b6377dd49535cfbaec0cfd71224d1fd5acbb6a0
      https://github.com/ehb54/ultrascan3/commit/6b6377dd49535cfbaec0cfd71224d1fd5acbb6a0
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2021-12-15 (Wed, 15 Dec 2021)

  Changed paths:
    M programs/us_convert/us_experiment.cpp
    M utils/us_project.cpp
    M utils/us_project.h

  Log Message:
  -----------
  GMP : IMPORT -- when making DB records while importing data, use autoflow-based invID for both 'experiment' && 'project' records ...


Compare: https://github.com/ehb54/ultrascan3/compare/5b0f4f4256b8...6b6377dd4953