[us-commits] [ehb54/ultrascan3] 708fe3: Merged into a single program
ehb54
noreply at github.com
Thu Jun 9 10:01:43 MDT 2022
Branch: refs/heads/master
Home: https://github.com/ehb54/ultrascan3
Commit: 708fe353c39801773f877305f84fde728acdbebf
https://github.com/ehb54/ultrascan3/commit/708fe353c39801773f877305f84fde728acdbebf
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2022-04-26 (Tue, 26 Apr 2022)
Changed paths:
R programs/us_pseudo_absorbance/add_refScan.cpp
R programs/us_pseudo_absorbance/add_refScan.h
R programs/us_pseudo_absorbance/build_colormap.cpp
R programs/us_pseudo_absorbance/build_colormap.h
R programs/us_pseudo_absorbance/convert_scan.cpp
R programs/us_pseudo_absorbance/convert_scan.h
R programs/us_pseudo_absorbance/refScan_dataIO.cpp
R programs/us_pseudo_absorbance/refScan_dataIO.h
R programs/us_pseudo_absorbance/select_program.cpp
R programs/us_pseudo_absorbance/select_program.h
R programs/us_pseudo_absorbance/switch.cpp
R programs/us_pseudo_absorbance/switch.h
A programs/us_pseudo_absorbance/us_add_refScan.cpp
A programs/us_pseudo_absorbance/us_add_refScan.h
A programs/us_pseudo_absorbance/us_convert_scan.cpp
A programs/us_pseudo_absorbance/us_convert_scan.h
A programs/us_pseudo_absorbance/us_gen_colormap.cpp
A programs/us_pseudo_absorbance/us_gen_colormap.h
A programs/us_pseudo_absorbance/us_pseudo_absorbance.cpp
A programs/us_pseudo_absorbance/us_pseudo_absorbance.h
M programs/us_pseudo_absorbance/us_pseudo_absorbance.pro
R programs/us_pseudo_absorbance/us_pseudo_absorbance_main.cpp
A programs/us_pseudo_absorbance/us_refScan_dataIO.cpp
A programs/us_pseudo_absorbance/us_refScan_dataIO.h
Log Message:
-----------
Merged into a single program
Commit: 734d9a1968744f4783603c769adbe20131e8ee77
https://github.com/ehb54/ultrascan3/commit/734d9a1968744f4783603c769adbe20131e8ee77
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2022-05-03 (Tue, 03 May 2022)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: f7460567319bc634dc968283589fdc73656b319e
https://github.com/ehb54/ultrascan3/commit/f7460567319bc634dc968283589fdc73656b319e
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2022-05-03 (Tue, 03 May 2022)
Changed paths:
M programs/us_pseudo_absorbance/us_add_refScan.cpp
M programs/us_pseudo_absorbance/us_add_refScan.h
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.h
Log Message:
-----------
debugged pseudo_absorbance program
Commit: 328333b9788a89f5c7702c4eb01652c7bb75eded
https://github.com/ehb54/ultrascan3/commit/328333b9788a89f5c7702c4eb01652c7bb75eded
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2022-05-09 (Mon, 09 May 2022)
Changed paths:
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.h
Log Message:
-----------
fix shift absorbance
Commit: 2c18e9f3700fae3fbf0a04ebbf94489c45210cbd
https://github.com/ehb54/ultrascan3/commit/2c18e9f3700fae3fbf0a04ebbf94489c45210cbd
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2022-05-10 (Tue, 10 May 2022)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_edit/us_edit.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: 1403baf7503eb1f9144ca1f35acb89f1954f1807
https://github.com/ehb54/ultrascan3/commit/1403baf7503eb1f9144ca1f35acb89f1954f1807
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2022-05-12 (Thu, 12 May 2022)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.h
Log Message:
-----------
Add the RMSD of species fitting
Commit: 25d388fd010647c85c38f97bf1bdd37db575426b
https://github.com/ehb54/ultrascan3/commit/25d388fd010647c85c38f97bf1bdd37db575426b
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2022-05-21 (Sat, 21 May 2022)
Changed paths:
A programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
A programs/us_mwl_species_fit/us_mwl_sf_plot3d.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.h
M programs/us_mwl_species_fit/us_mwl_species_fit.pro
Log Message:
-----------
add 3dplot of rmsd of species fit
Commit: 5708728c8815afd8a366ad54a6911fbbe038aa61
https://github.com/ehb54/ultrascan3/commit/5708728c8815afd8a366ad54a6911fbbe038aa61
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2022-05-21 (Sat, 21 May 2022)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M us_somo/etc/somo.atom.new
M us_somo/etc/somo.residue.new
M utils/us_ana_profile.cpp
M utils/us_report_gmp.cpp
M utils/us_report_gmp.h
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: 9138fa88b050b4bdf992b9c1fea3e4c07834c0de
https://github.com/ehb54/ultrascan3/commit/9138fa88b050b4bdf992b9c1fea3e4c07834c0de
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2022-05-21 (Sat, 21 May 2022)
Changed paths:
A programs/us_peak_decomposition/us_peak_decomposition.h
A programs/us_peak_decomposition/us_peak_decomposition.pro
A programs/us_peak_decomposition/us_peak_decomposition_main.cpp
Log Message:
-----------
add peak decomposition program
Commit: 78e2736dea55f416e2e5b7a4deaa48977c992ae5
https://github.com/ehb54/ultrascan3/commit/78e2736dea55f416e2e5b7a4deaa48977c992ae5
Author: Saeed Mortezazadeh <s.mortezazadeh86 at gmail.com>
Date: 2022-05-28 (Sat, 28 May 2022)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: 1554a0df0cc61463d704dbf576b4f498057959f9
https://github.com/ehb54/ultrascan3/commit/1554a0df0cc61463d704dbf576b4f498057959f9
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2022-06-01 (Wed, 01 Jun 2022)
Changed paths:
A programs/us_mwl_species_fit/us_customformatter.cpp
A programs/us_mwl_species_fit/us_customformatter.h
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.pro
Log Message:
-----------
add formatter for 3d axis title
Commit: c7ab7c7b43dbd382d3af9e50d57434aeb1659741
https://github.com/ehb54/ultrascan3/commit/c7ab7c7b43dbd382d3af9e50d57434aeb1659741
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2022-06-01 (Wed, 01 Jun 2022)
Changed paths:
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.h
R programs/us_pseudo_absorbance/us_gen_colormap.cpp
R programs/us_pseudo_absorbance/us_gen_colormap.h
A programs/us_pseudo_absorbance/us_pabs_common.cpp
A programs/us_pseudo_absorbance/us_pabs_common.h
M programs/us_pseudo_absorbance/us_pseudo_absorbance.cpp
M programs/us_pseudo_absorbance/us_pseudo_absorbance.h
M programs/us_pseudo_absorbance/us_pseudo_absorbance.pro
A programs/us_pseudo_absorbance/us_remove_ri.cpp
A programs/us_pseudo_absorbance/us_remove_ri.h
Log Message:
-----------
add a new program for removing radial invariant noise from auc file and save the new one to the local disk
Commit: c128442ff5012491b031b72afb7983002afcae39
https://github.com/ehb54/ultrascan3/commit/c128442ff5012491b031b72afb7983002afcae39
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2022-06-02 (Thu, 02 Jun 2022)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
Log Message:
-----------
fix the issue of looping through the scans to get the meniscus rvalue
Commit: 06743df94d84a8fdb0f0bd5a0dbba5430ec567cd
https://github.com/ehb54/ultrascan3/commit/06743df94d84a8fdb0f0bd5a0dbba5430ec567cd
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2022-06-02 (Thu, 02 Jun 2022)
Changed paths:
M programs/us_pseudo_absorbance/us_remove_ri.cpp
M programs/us_pseudo_absorbance/us_remove_ri.h
Log Message:
-----------
add polynomial fit, remove noise, and plot
Commit: f2b61542ef278940c165b4eeb0851104a808c047
https://github.com/ehb54/ultrascan3/commit/f2b61542ef278940c165b4eeb0851104a808c047
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2022-06-03 (Fri, 03 Jun 2022)
Changed paths:
M programs/us_pseudo_absorbance/us_remove_ri.cpp
M programs/us_pseudo_absorbance/us_remove_ri.h
Log Message:
-----------
removing RI noise from raw data completed
Commit: b72bdb4dd3e235dd42e2155bc1a696fe152a456f
https://github.com/ehb54/ultrascan3/commit/b72bdb4dd3e235dd42e2155bc1a696fe152a456f
Author: Saeed Mortezazadeh <s.mortezazadeh86 at gmail.com>
Date: 2022-06-07 (Tue, 07 Jun 2022)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
Log Message:
-----------
fixed issue with finding the meniscus rvalue for case of the number scans is less than 10
Commit: c4acff08415c6b333c90d2bc22c9a4eaef22164d
https://github.com/ehb54/ultrascan3/commit/c4acff08415c6b333c90d2bc22c9a4eaef22164d
Author: Saeed Mortezazadeh <s.mortezazadeh86 at gmail.com>
Date: 2022-06-07 (Tue, 07 Jun 2022)
Changed paths:
M programs/us_pseudo_absorbance/us_remove_ri.cpp
M programs/us_pseudo_absorbance/us_remove_ri.h
Log Message:
-----------
save indexes instead of the value of select radial points, fixed issue with subtracting from the fitted line
Commit: 300a3328a6d9a5590a9db96e4f2010febf1e264b
https://github.com/ehb54/ultrascan3/commit/300a3328a6d9a5590a9db96e4f2010febf1e264b
Author: Saeed Mortezazadeh <s.mortezazadeh86 at gmail.com>
Date: 2022-06-08 (Wed, 08 Jun 2022)
Changed paths:
M programs/us_mwl_species_fit/us_customformatter.cpp
M programs/us_mwl_species_fit/us_customformatter.h
Log Message:
-----------
customformatter edited to get min and max values instead of offset and scale
Commit: 132556694a391d88b2e825b949b9f652b0ea2a1d
https://github.com/ehb54/ultrascan3/commit/132556694a391d88b2e825b949b9f652b0ea2a1d
Author: Saeed Mortezazadeh <s.mortezazadeh86 at gmail.com>
Date: 2022-06-08 (Wed, 08 Jun 2022)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h
Log Message:
-----------
add axis modifier
Commit: d66825813670388af9e4e027e14196d30dd303d7
https://github.com/ehb54/ultrascan3/commit/d66825813670388af9e4e027e14196d30dd303d7
Author: Saeed Mortezazadeh <s.mortezazadeh86 at gmail.com>
Date: 2022-06-08 (Wed, 08 Jun 2022)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h
Log Message:
-----------
removed the offset-scale approach completely
Commit: b4336fd94d04289360955039191f4a5ccaa8679c
https://github.com/ehb54/ultrascan3/commit/b4336fd94d04289360955039191f4a5ccaa8679c
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2022-06-08 (Wed, 08 Jun 2022)
Changed paths:
M programs/us_mwl_species_fit/us_customformatter.cpp
M programs/us_mwl_species_fit/us_customformatter.h
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h
Log Message:
-----------
Changes in customformatter: remove recalculate, add stringForValue, Changes in mwl_sf_plot3d: add camera, rotating axis title, save to image file, edit fillproxy, complete axis modifier, toggle selection
Commit: 15b17330d8e2e3b7d44e18770a885d9963c89db1
https://github.com/ehb54/ultrascan3/commit/15b17330d8e2e3b7d44e18770a885d9963c89db1
Author: Saeed Mortezazadeh <s.mortezazadeh86 at gmail.com>
Date: 2022-06-08 (Wed, 08 Jun 2022)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h
Log Message:
-----------
add render to file
Commit: 8d591de9fa7fe3a4ec35c4fa36be542cfb0d6895
https://github.com/ehb54/ultrascan3/commit/8d591de9fa7fe3a4ec35c4fa36be542cfb0d6895
Author: Saeed Mortezazadeh <s.mortezazadeh86 at gmail.com>
Date: 2022-06-08 (Wed, 08 Jun 2022)
Changed paths:
M .github/workflows/codeql-analysis.yml
M admin/codeql/docker/docker/Dockerfile
M admin/codeql/docker/dockerdev/Dockerfile
M admin/codeql/docker/local.pri.gui
M admin/codeql/docker/local.pri.mpi
M admin/codeql/docker/local.pri.somo
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.h
M programs/us_convert/us_convert_gui.cpp
M programs/us_fit_meniscus/us_fit_meniscus.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M us_somo/develop/src/us_hydrodyn_asab1.cpp
M us_somo/develop/src/us_hydrodyn_cluster.cpp
M us_somo/develop/src/us_saxs_util_asab1.cpp
M us_somo/develop/src/us_saxs_util_hydro_asab1_hydro.cpp
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: 43092f1284e5cf41b2d4633fdb84626aa94dc483
https://github.com/ehb54/ultrascan3/commit/43092f1284e5cf41b2d4633fdb84626aa94dc483
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2022-06-09 (Thu, 09 Jun 2022)
Changed paths:
A programs/us_mwl_species_fit/us_customformatter.cpp
A programs/us_mwl_species_fit/us_customformatter.h
A programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
A programs/us_mwl_species_fit/us_mwl_sf_plot3d.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.h
M programs/us_mwl_species_fit/us_mwl_species_fit.pro
A programs/us_peak_decomposition/us_peak_decomposition.h
A programs/us_peak_decomposition/us_peak_decomposition.pro
A programs/us_peak_decomposition/us_peak_decomposition_main.cpp
R programs/us_pseudo_absorbance/add_refScan.cpp
R programs/us_pseudo_absorbance/add_refScan.h
R programs/us_pseudo_absorbance/build_colormap.cpp
R programs/us_pseudo_absorbance/build_colormap.h
R programs/us_pseudo_absorbance/convert_scan.cpp
R programs/us_pseudo_absorbance/convert_scan.h
R programs/us_pseudo_absorbance/refScan_dataIO.cpp
R programs/us_pseudo_absorbance/refScan_dataIO.h
R programs/us_pseudo_absorbance/select_program.cpp
R programs/us_pseudo_absorbance/select_program.h
R programs/us_pseudo_absorbance/switch.cpp
R programs/us_pseudo_absorbance/switch.h
A programs/us_pseudo_absorbance/us_add_refScan.cpp
A programs/us_pseudo_absorbance/us_add_refScan.h
A programs/us_pseudo_absorbance/us_convert_scan.cpp
A programs/us_pseudo_absorbance/us_convert_scan.h
A programs/us_pseudo_absorbance/us_pabs_common.cpp
A programs/us_pseudo_absorbance/us_pabs_common.h
A programs/us_pseudo_absorbance/us_pseudo_absorbance.cpp
A programs/us_pseudo_absorbance/us_pseudo_absorbance.h
M programs/us_pseudo_absorbance/us_pseudo_absorbance.pro
R programs/us_pseudo_absorbance/us_pseudo_absorbance_main.cpp
A programs/us_pseudo_absorbance/us_refScan_dataIO.cpp
A programs/us_pseudo_absorbance/us_refScan_dataIO.h
A programs/us_pseudo_absorbance/us_remove_ri.cpp
A programs/us_pseudo_absorbance/us_remove_ri.h
Log Message:
-----------
Merge pull request #36 from samo38/master
mwl-species-fit 3dplot and updated pseudo-absorbance program
Compare: https://github.com/ehb54/ultrascan3/compare/33cf10b81123...43092f1284e5
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