[us-commits] [ehb54/ultrascan3] 47b56b: GMP 6. REPORT -- prep steps for averaging over rep...

Mon May 23 17:53:41 MDT 2022

  Branch: refs/heads/release-beta
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 47b56bfccc48229e60342ca69ebd5314d4745e00
      https://github.com/ehb54/ultrascan3/commit/47b56bfccc48229e60342ca69ebd5314d4745e00
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2022-05-14 (Sat, 14 May 2022)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M utils/us_ana_profile.cpp

  Log Message:
  -----------
  GMP 6. REPORT -- prep steps for averaging over replicate groups && their sub-groups based on triple (wvl), type/method, ranges, integraiton value...


  Commit: 7bbacea8def84c9bf98cf2ad1633a36c8bd0ab3d
      https://github.com/ehb54/ultrascan3/commit/7bbacea8def84c9bf98cf2ad1633a36c8bd0ab3d
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2022-05-16 (Mon, 16 May 2022)

  Changed paths:
    M us_somo/etc/somo.atom.new
    M us_somo/etc/somo.residue.new

  Log Message:
  -----------
  somo.atom.new somo.residue.new - updated release vesions of somo data files


  Commit: 15c4314eedb6558175521a69493403bbe3569de4
      https://github.com/ehb54/ultrascan3/commit/15c4314eedb6558175521a69493403bbe3569de4
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2022-05-16 (Mon, 16 May 2022)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M utils/us_report_gmp.cpp
    M utils/us_report_gmp.h

  Log Message:
  -----------
  GMP 6. REPORT -- implementation of the Replicate Groups averaging: report is divided into: (1) Replicate Group [channles]; (2) Subgroups [wavelength]; (3) && further -- grouped by type-method [e.g. s-2DSA-MC], ranges [e.g. 3.2-3.7], target int. value ...


  Commit: 23f996d81da4755c46a2aba7c0f3c9fb4e2f9a2b
      https://github.com/ehb54/ultrascan3/commit/23f996d81da4755c46a2aba7c0f3c9fb4e2f9a2b
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2022-05-16 (Mon, 16 May 2022)

  Changed paths:
    M us_somo/etc/somo.atom.new
    M us_somo/etc/somo.residue.new

  Log Message:
  -----------
  Merge branch 'master' of github.com:ehb54/ultrascan3


  Commit: d8117e21bd88d4ff78070b6e09dc71d7787aefc2
      https://github.com/ehb54/ultrascan3/commit/d8117e21bd88d4ff78070b6e09dc71d7787aefc2
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2022-05-16 (Mon, 16 May 2022)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP 6. REPORT -- [small fix for] implementation of the Replicate Groups averaging: report is divided into: (1) Replicate Group [channles]; (2) Subgroups [wavelength]; (3) && further -- grouped by type-method [e.g. s-2DSA-MC], ranges [e.g. 3.2-3.7], target int. value ...


  Commit: 899b7ab77c40493fcc7fbca2888c73a87b969177
      https://github.com/ehb54/ultrascan3/commit/899b7ab77c40493fcc7fbca2888c73a87b969177
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2022-05-16 (Mon, 16 May 2022)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP 6. REPORT -- [extra debug for] implementation of the Replicate Groups averaging: report is divided into: (1) Replicate Group [channles]; (2) Subgroups [wavelength]; (3) && further -- grouped by type-method [e.g. s-2DSA-MC], ranges [e.g. 3.2-3.7], target int. value ...


  Commit: a4cc98a737566ade7a81053a3a610e2e7bd360e3
      https://github.com/ehb54/ultrascan3/commit/a4cc98a737566ade7a81053a3a610e2e7bd360e3
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2022-05-16 (Mon, 16 May 2022)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP 6. REPORT -- [extra debugs && fixes for] implementation of the Replicate Groups averaging: report is divided into: (1) Replicate Group [channles]; (2) Subgroups [wavelength]; (3) && further -- grouped by type-method [e.g. s-2DSA-MC], ranges [e.g. 3.2-3.7], target int. value ...


  Commit: ee4666d6356e27df1ed5970b2e4956203b00c9cc
      https://github.com/ehb54/ultrascan3/commit/ee4666d6356e27df1ed5970b2e4956203b00c9cc
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2022-05-16 (Mon, 16 May 2022)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M utils/us_report_gmp.cpp

  Log Message:
  -----------
  GMP 6. REPORT -- [bug fixes for] implementation of the Replicate Groups averaging: report is divided into: (1) Replicate Group [channles]; (2) Subgroups [wavelength]; (3) && further -- grouped by type-method [e.g. s-2DSA-MC], ranges [e.g. 3.2-3.7], target int. value ...


  Commit: 6cba9e4d1916c53e1bc5867e8e252c3e037a32c2
      https://github.com/ehb54/ultrascan3/commit/6cba9e4d1916c53e1bc5867e8e252c3e037a32c2
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2022-05-16 (Mon, 16 May 2022)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP 6. REPORT -- [bug fixes for] implementation of the Replicate Groups averaging: report is divided into: (1) Replicate Group [channles]; (2) Subgroups [wavelength]; (3) && further -- grouped by type-method [e.g. s-2DSA-MC], ranges [e.g. 3.2-3.7], target int. value ...


  Commit: d3d0eb3af80d2fbb55508cf63b3ea2aa5f1efb4b
      https://github.com/ehb54/ultrascan3/commit/d3d0eb3af80d2fbb55508cf63b3ea2aa5f1efb4b
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2022-05-16 (Mon, 16 May 2022)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp

  Log Message:
  -----------
  GMP 6. REPORT -- [bug fixes for] implementation of the Replicate Groups averaging: report is divided into: (1) Replicate Group [channles]; (2) Subgroups [wavelength]; (3) && further -- grouped by type-method [e.g. s-2DSA-MC], ranges [e.g. 3.2-3.7], target int. value ...


  Commit: 8d5aaf5c0a4c5b9d78b02a8179b03d7df9ee816e
      https://github.com/ehb54/ultrascan3/commit/8d5aaf5c0a4c5b9d78b02a8179b03d7df9ee816e
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2022-05-16 (Mon, 16 May 2022)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP 6. REPORT -- [bug fixes for] implementation of the Replicate Groups averaging: report is divided into: (1) Replicate Group [channles]; (2) Subgroups [wavelength]; (3) && further -- grouped by type-method [e.g. s-2DSA-MC], ranges [e.g. 3.2-3.7], target int. value ...


  Commit: beb61a4b6f855d2a13b274284a5150fa17866ea5
      https://github.com/ehb54/ultrascan3/commit/beb61a4b6f855d2a13b274284a5150fa17866ea5
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2022-05-18 (Wed, 18 May 2022)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  GMP 6. REPORT -- [add standard deviation for] implementation of the Replicate Groups averaging: report is divided into: (1) Replicate Group [channles]; (2) Subgroups [wavelength]; (3) && further -- grouped by type-method [e.g. s-2DSA-MC], ranges [e.g. 3.2-3.7], target int. value ...


  Commit: 2ced86ee7020d4b9c1d9d17869b55d8621d42a46
      https://github.com/ehb54/ultrascan3/commit/2ced86ee7020d4b9c1d9d17869b55d8621d42a46
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2022-05-18 (Wed, 18 May 2022)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP 6. REPORT -- [add av. fraction of total && PASSED info for] implementation of the Replicate Groups averaging: report is divided into: (1) Replicate Group [channles]; (2) Subgroups [wavelength]; (3) && further -- grouped by type-method [e.g. s-2DSA-MC], ranges [e.g. 3.2-3.7], target int. value ...


  Commit: 223bc9015c11270d6e76319df50a78bd0f035ac7
      https://github.com/ehb54/ultrascan3/commit/223bc9015c11270d6e76319df50a78bd0f035ac7
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2022-05-18 (Wed, 18 May 2022)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  GMP 6. REPORT -- [and tolerance...] implementation of the Replicate Groups averaging: report is divided into: (1) Replicate Group [channles]; (2) Subgroups [wavelength]; (3) && further -- grouped by type-method [e.g. s-2DSA-MC], ranges [e.g. 3.2-3.7], target int. value ...


  Commit: 84f91dac086ad927e0dc22b082b67e3a0aed0d38
      https://github.com/ehb54/ultrascan3/commit/84f91dac086ad927e0dc22b082b67e3a0aed0d38
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2022-05-18 (Wed, 18 May 2022)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP 6. REPORT -- [small fixes for.] implementation of the Replicate Groups averaging: report is divided into: (1) Replicate Group [channles]; (2) Subgroups [wavelength]; (3) && further -- grouped by type-method [e.g. s-2DSA-MC], ranges [e.g. 3.2-3.7], target int. value ...


  Commit: 671bdee94d03f40f81158627c2a82936e481defc
      https://github.com/ehb54/ultrascan3/commit/671bdee94d03f40f81158627c2a82936e481defc
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2022-05-19 (Thu, 19 May 2022)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  GMP 6. REPORT -- [add St. dev column for Av. Fraciton of total..] implementation of the Replicate Groups averaging: report is divided into: (1) Replicate Group [channles]; (2) Subgroups [wavelength]; (3) && further -- grouped by type-method [e.g. s-2DSA-MC], ranges [e.g. 3.2-3.7], target int. value ...


  Commit: 3ac304464277aced2285eb42c276d314b8033336
      https://github.com/ehb54/ultrascan3/commit/3ac304464277aced2285eb42c276d314b8033336
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2022-05-19 (Thu, 19 May 2022)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP 6. REPORT -- [fixes for add St. dev column for Av. Fraciton of total..] implementation of the Replicate Groups averaging: report is divided into: (1) Replicate Group [channles]; (2) Subgroups [wavelength]; (3) && further -- grouped by type-method [e.g. s-2DSA-MC], ranges [e.g. 3.2-3.7], target int. value ...


  Commit: 7b071cedfb6cc6873ff325b6b7c418c5c224e9f1
      https://github.com/ehb54/ultrascan3/commit/7b071cedfb6cc6873ff325b6b7c418c5c224e9f1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2022-05-19 (Thu, 19 May 2022)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP 6. REPORT -- [fixes for add St. dev column for Av. Fraciton of total..] implementation of the Replicate Groups averaging: report is divided into: (1) Replicate Group [channles]; (2) Subgroups [wavelength]; (3) && further -- grouped by type-method [e.g. s-2DSA-MC], ranges [e.g. 3.2-3.7], target int. value ...


  Commit: aa5727606b3e46184601bd19af69bbf1da4be837
      https://github.com/ehb54/ultrascan3/commit/aa5727606b3e46184601bd19af69bbf1da4be837
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2022-05-19 (Thu, 19 May 2022)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP 6. REPORT -- [fixes for add St. dev column for Av. Fraciton of total..] implementation of the Replicate Groups averaging: report is divided into: (1) Replicate Group [channles]; (2) Subgroups [wavelength]; (3) && further -- grouped by type-method [e.g. s-2DSA-MC], ranges [e.g. 3.2-3.7], target int. value ...


  Commit: 7c93ed6ad42d9e7834d86c772158298bd3874298
      https://github.com/ehb54/ultrascan3/commit/7c93ed6ad42d9e7834d86c772158298bd3874298
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2022-05-19 (Thu, 19 May 2022)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP 6. REPORT -- [fixes for add St. dev column for Av. Fraciton of total..] implementation of the Replicate Groups averaging: report is divided into: (1) Replicate Group [channles]; (2) Subgroups [wavelength]; (3) && further -- grouped by type-method [e.g. s-2DSA-MC], ranges [e.g. 3.2-3.7], target int. value ...ush


  Commit: cfe4b6e76e631155cb4bcf4337ac927d38de666a
      https://github.com/ehb54/ultrascan3/commit/cfe4b6e76e631155cb4bcf4337ac927d38de666a
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2022-05-19 (Thu, 19 May 2022)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP 6. REPORT -- [fixes for add St. dev column for Av. Fraciton of total..] implementation of the Replicate Groups averaging: report is divided into: (1) Replicate Group [channles]; (2) Subgroups [wavelength]; (3) && further -- grouped by type-method [e.g. s-2DSA-MC], ranges [e.g. 3.2-3.7], target int. value ...ush


  Commit: 64386d608327739a38eb1072c053065453434e3e
      https://github.com/ehb54/ultrascan3/commit/64386d608327739a38eb1072c053065453434e3e
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2022-05-23 (Mon, 23 May 2022)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  GMP 6. REPORT -- use runName in the title; add protocol name into General; add Optima's runID to MAchine/oprator...


  Commit: a71bee6c52dfbcc45b7431bb1dd657e18d22e20a
      https://github.com/ehb54/ultrascan3/commit/a71bee6c52dfbcc45b7431bb1dd657e18d22e20a
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2022-05-24 (Tue, 24 May 2022)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M us_somo/etc/somo.atom.new
    M us_somo/etc/somo.residue.new
    M utils/us_ana_profile.cpp
    M utils/us_report_gmp.cpp
    M utils/us_report_gmp.h

  Log Message:
  -----------
  Merge pull request #33 from ehb54/master

merge master to release-beta


Compare: https://github.com/ehb54/ultrascan3/compare/0fb49fb42a3c...a71bee6c52df