[us-commits] [ehb54/ultrascan3] 401f54: Update doxygen of us_datafiles.h get_filename

Sat Aug 3 18:28:50 MDT 2024

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 401f540dcedf478db4686bd463417b6c19438f06
      https://github.com/ehb54/ultrascan3/commit/401f540dcedf478db4686bd463417b6c19438f06
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M utils/us_datafiles.h

  Log Message:
  -----------
  Update doxygen of us_datafiles.h get_filename

  Commit: 0b124e728d198e55f9c1ff0dfd1db573ef6c3658
      https://github.com/ehb54/ultrascan3/commit/0b124e728d198e55f9c1ff0dfd1db573ef6c3658
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    A us_somo/develop/include/Eigen/Cholesky
    A us_somo/develop/include/Eigen/CholmodSupport
    A us_somo/develop/include/Eigen/Core
    A us_somo/develop/include/Eigen/Dense
    A us_somo/develop/include/Eigen/Eigen
    A us_somo/develop/include/Eigen/Eigenvalues
    A us_somo/develop/include/Eigen/Geometry
    A us_somo/develop/include/Eigen/Householder
    A us_somo/develop/include/Eigen/IterativeLinearSolvers
    A us_somo/develop/include/Eigen/Jacobi
    A us_somo/develop/include/Eigen/KLUSupport
    A us_somo/develop/include/Eigen/LU
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    A us_somo/develop/include/Eigen/OrderingMethods
    A us_somo/develop/include/Eigen/PaStiXSupport
    A us_somo/develop/include/Eigen/PardisoSupport
    A us_somo/develop/include/Eigen/QR
    A us_somo/develop/include/Eigen/QtAlignedMalloc
    A us_somo/develop/include/Eigen/SPQRSupport
    A us_somo/develop/include/Eigen/SVD
    A us_somo/develop/include/Eigen/Sparse
    A us_somo/develop/include/Eigen/SparseCholesky
    A us_somo/develop/include/Eigen/SparseCore
    A us_somo/develop/include/Eigen/SparseLU
    A us_somo/develop/include/Eigen/SparseQR
    A us_somo/develop/include/Eigen/StdDeque
    A us_somo/develop/include/Eigen/StdList
    A us_somo/develop/include/Eigen/StdVector
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    A us_somo/develop/include/Eigen/src/Cholesky/LLT_LAPACKE.h
    A us_somo/develop/include/Eigen/src/CholmodSupport/CholmodSupport.h
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    A us_somo/develop/include/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h
    A us_somo/develop/include/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h
    A us_somo/develop/include/Eigen/src/Core/arch/AltiVec/PacketMath.h
    A us_somo/develop/include/Eigen/src/Core/arch/CUDA/Complex.h
    A us_somo/develop/include/Eigen/src/Core/arch/Default/BFloat16.h
    A us_somo/develop/include/Eigen/src/Core/arch/Default/ConjHelper.h
    A us_somo/develop/include/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h
    A us_somo/develop/include/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h
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    A us_somo/develop/include/Eigen/src/Core/arch/Default/Settings.h
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    A us_somo/develop/include/Eigen/src/Core/arch/NEON/Complex.h
    A us_somo/develop/include/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h
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    A us_somo/develop/include/Eigen/src/Core/arch/SVE/MathFunctions.h
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    A us_somo/develop/include/Eigen/src/Core/arch/SYCL/InteropHeaders.h
    A us_somo/develop/include/Eigen/src/Core/arch/SYCL/MathFunctions.h
    A us_somo/develop/include/Eigen/src/Core/arch/SYCL/PacketMath.h
    A us_somo/develop/include/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h
    A us_somo/develop/include/Eigen/src/Core/arch/SYCL/TypeCasting.h
    A us_somo/develop/include/Eigen/src/Core/arch/ZVector/Complex.h
    A us_somo/develop/include/Eigen/src/Core/arch/ZVector/MathFunctions.h
    A us_somo/develop/include/Eigen/src/Core/arch/ZVector/PacketMath.h
    A us_somo/develop/include/Eigen/src/Core/functors/AssignmentFunctors.h
    A us_somo/develop/include/Eigen/src/Core/functors/BinaryFunctors.h
    A us_somo/develop/include/Eigen/src/Core/functors/NullaryFunctors.h
    A us_somo/develop/include/Eigen/src/Core/functors/StlFunctors.h
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    A us_somo/develop/include/Eigen/src/Core/functors/UnaryFunctors.h
    A us_somo/develop/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h
    A us_somo/develop/include/Eigen/src/Core/products/GeneralMatrixMatrix.h
    A us_somo/develop/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h
    A us_somo/develop/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h
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    A us_somo/develop/include/Eigen/src/Core/products/GeneralMatrixVector.h
    A us_somo/develop/include/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h
    A us_somo/develop/include/Eigen/src/Core/products/Parallelizer.h
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    A us_somo/develop/include/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h
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    A us_somo/develop/include/Eigen/src/Core/products/SelfadjointRank2Update.h
    A us_somo/develop/include/Eigen/src/Core/products/TriangularMatrixMatrix.h
    A us_somo/develop/include/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h
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    A us_somo/develop/include/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h
    A us_somo/develop/include/Eigen/src/Core/products/TriangularSolverMatrix.h
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    A us_somo/develop/include/Eigen/src/SparseCore/SparseTranspose.h
    A us_somo/develop/include/Eigen/src/SparseCore/SparseTriangularView.h
    A us_somo/develop/include/Eigen/src/SparseCore/SparseUtil.h
    A us_somo/develop/include/Eigen/src/SparseCore/SparseVector.h
    A us_somo/develop/include/Eigen/src/SparseCore/SparseView.h
    A us_somo/develop/include/Eigen/src/SparseCore/TriangularSolver.h
    A us_somo/develop/include/Eigen/src/SparseLU/SparseLU.h
    A us_somo/develop/include/Eigen/src/SparseLU/SparseLUImpl.h
    A us_somo/develop/include/Eigen/src/SparseLU/SparseLU_Memory.h
    A us_somo/develop/include/Eigen/src/SparseLU/SparseLU_Structs.h
    A us_somo/develop/include/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h
    A us_somo/develop/include/Eigen/src/SparseLU/SparseLU_Utils.h
    A us_somo/develop/include/Eigen/src/SparseLU/SparseLU_column_bmod.h
    A us_somo/develop/include/Eigen/src/SparseLU/SparseLU_column_dfs.h
    A us_somo/develop/include/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h
    A us_somo/develop/include/Eigen/src/SparseLU/SparseLU_gemm_kernel.h
    A us_somo/develop/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h
    A us_somo/develop/include/Eigen/src/SparseLU/SparseLU_kernel_bmod.h
    A us_somo/develop/include/Eigen/src/SparseLU/SparseLU_panel_bmod.h
    A us_somo/develop/include/Eigen/src/SparseLU/SparseLU_panel_dfs.h
    A us_somo/develop/include/Eigen/src/SparseLU/SparseLU_pivotL.h
    A us_somo/develop/include/Eigen/src/SparseLU/SparseLU_pruneL.h
    A us_somo/develop/include/Eigen/src/SparseLU/SparseLU_relax_snode.h
    A us_somo/develop/include/Eigen/src/SparseQR/SparseQR.h
    A us_somo/develop/include/Eigen/src/StlSupport/StdDeque.h
    A us_somo/develop/include/Eigen/src/StlSupport/StdList.h
    A us_somo/develop/include/Eigen/src/StlSupport/StdVector.h
    A us_somo/develop/include/Eigen/src/StlSupport/details.h
    A us_somo/develop/include/Eigen/src/SuperLUSupport/SuperLUSupport.h
    A us_somo/develop/include/Eigen/src/UmfPackSupport/UmfPackSupport.h
    A us_somo/develop/include/Eigen/src/misc/Image.h
    A us_somo/develop/include/Eigen/src/misc/Kernel.h
    A us_somo/develop/include/Eigen/src/misc/RealSvd2x2.h
    A us_somo/develop/include/Eigen/src/misc/blas.h
    A us_somo/develop/include/Eigen/src/misc/lapack.h
    A us_somo/develop/include/Eigen/src/misc/lapacke.h
    A us_somo/develop/include/Eigen/src/misc/lapacke_mangling.h
    A us_somo/develop/include/Eigen/src/plugins/ArrayCwiseBinaryOps.h
    A us_somo/develop/include/Eigen/src/plugins/ArrayCwiseUnaryOps.h
    A us_somo/develop/include/Eigen/src/plugins/BlockMethods.h
    A us_somo/develop/include/Eigen/src/plugins/CommonCwiseBinaryOps.h
    A us_somo/develop/include/Eigen/src/plugins/CommonCwiseUnaryOps.h
    A us_somo/develop/include/Eigen/src/plugins/IndexedViewMethods.h
    A us_somo/develop/include/Eigen/src/plugins/MatrixCwiseBinaryOps.h
    A us_somo/develop/include/Eigen/src/plugins/MatrixCwiseUnaryOps.h
    A us_somo/develop/include/Eigen/src/plugins/ReshapedMethods.h
    M us_somo/develop/include/us3i_plot.h
    A us_somo/develop/include/us_arch.h
    A us_somo/develop/include/us_average.h
    A us_somo/develop/include/us_container.h
    A us_somo/develop/include/us_container_grpy.h
    A us_somo/develop/include/us_eigen.h
    A us_somo/develop/include/us_ffd.h
    A us_somo/develop/include/us_fractal_dimension.h
    M us_somo/develop/include/us_gzip.h
    M us_somo/develop/include/us_hydrodyn.h
    M us_somo/develop/include/us_hydrodyn_addresidue.h
    M us_somo/develop/include/us_hydrodyn_batch.h
    A us_somo/develop/include/us_hydrodyn_dad.h
    A us_somo/develop/include/us_hydrodyn_dad_baseline_best.h
    A us_somo/develop/include/us_hydrodyn_dad_ciq.h
    A us_somo/develop/include/us_hydrodyn_dad_cistarq.h
    A us_somo/develop/include/us_hydrodyn_dad_conc.h
    A us_somo/develop/include/us_hydrodyn_dad_conc_csv_frames.h
    A us_somo/develop/include/us_hydrodyn_dad_conc_load.h
    A us_somo/develop/include/us_hydrodyn_dad_dctr.h
    A us_somo/develop/include/us_hydrodyn_dad_fit.h
    A us_somo/develop/include/us_hydrodyn_dad_fit_global.h
    A us_somo/develop/include/us_hydrodyn_dad_gauss_mode.h
    A us_somo/develop/include/us_hydrodyn_dad_movie.h
    A us_somo/develop/include/us_hydrodyn_dad_nth.h
    A us_somo/develop/include/us_hydrodyn_dad_options.h
    A us_somo/develop/include/us_hydrodyn_dad_p3d.h
    A us_somo/develop/include/us_hydrodyn_dad_parameters.h
    A us_somo/develop/include/us_hydrodyn_dad_scale_trend.h
    A us_somo/develop/include/us_hydrodyn_dad_simulate.h
    A us_somo/develop/include/us_hydrodyn_dad_svd.h
    A us_somo/develop/include/us_hydrodyn_fractal_dimension_options.h
    M us_somo/develop/include/us_hydrodyn_hydro.h
    M us_somo/develop/include/us_hydrodyn_hydro_zeno.h
    A us_somo/develop/include/us_hydrodyn_mals.h
    A us_somo/develop/include/us_hydrodyn_mals_baseline_best.h
    A us_somo/develop/include/us_hydrodyn_mals_ciq.h
    A us_somo/develop/include/us_hydrodyn_mals_cistarq.h
    A us_somo/develop/include/us_hydrodyn_mals_conc.h
    A us_somo/develop/include/us_hydrodyn_mals_conc_csv_frames.h
    A us_somo/develop/include/us_hydrodyn_mals_conc_load.h
    A us_somo/develop/include/us_hydrodyn_mals_dctr.h
    A us_somo/develop/include/us_hydrodyn_mals_fit.h
    A us_somo/develop/include/us_hydrodyn_mals_fit_global.h
    A us_somo/develop/include/us_hydrodyn_mals_gauss_mode.h
    A us_somo/develop/include/us_hydrodyn_mals_movie.h
    A us_somo/develop/include/us_hydrodyn_mals_nth.h
    A us_somo/develop/include/us_hydrodyn_mals_options.h
    A us_somo/develop/include/us_hydrodyn_mals_p3d.h
    A us_somo/develop/include/us_hydrodyn_mals_parameters.h
    A us_somo/develop/include/us_hydrodyn_mals_saxs.h
    A us_somo/develop/include/us_hydrodyn_mals_saxs_baseline_best.h
    A us_somo/develop/include/us_hydrodyn_mals_saxs_ciq.h
    A us_somo/develop/include/us_hydrodyn_mals_saxs_cistarq.h
    A us_somo/develop/include/us_hydrodyn_mals_saxs_conc.h
    A us_somo/develop/include/us_hydrodyn_mals_saxs_conc_csv_frames.h
    A us_somo/develop/include/us_hydrodyn_mals_saxs_conc_load.h
    A us_somo/develop/include/us_hydrodyn_mals_saxs_dctr.h
    A us_somo/develop/include/us_hydrodyn_mals_saxs_fit.h
    A us_somo/develop/include/us_hydrodyn_mals_saxs_fit_global.h
    A us_somo/develop/include/us_hydrodyn_mals_saxs_gauss_mode.h
    A us_somo/develop/include/us_hydrodyn_mals_saxs_movie.h
    A us_somo/develop/include/us_hydrodyn_mals_saxs_nth.h
    A us_somo/develop/include/us_hydrodyn_mals_saxs_options.h
    A us_somo/develop/include/us_hydrodyn_mals_saxs_p3d.h
    A us_somo/develop/include/us_hydrodyn_mals_saxs_parameters.h
    A us_somo/develop/include/us_hydrodyn_mals_saxs_scale_trend.h
    A us_somo/develop/include/us_hydrodyn_mals_saxs_simulate.h
    A us_somo/develop/include/us_hydrodyn_mals_saxs_svd.h
    A us_somo/develop/include/us_hydrodyn_mals_scale_trend.h
    A us_somo/develop/include/us_hydrodyn_mals_simulate.h
    A us_somo/develop/include/us_hydrodyn_mals_svd.h
    M us_somo/develop/include/us_hydrodyn_misc.h
    M us_somo/develop/include/us_hydrodyn_pdbdefs.h
    M us_somo/develop/include/us_hydrodyn_sas_options_saxs.h
    M us_somo/develop/include/us_hydrodyn_save.h
    M us_somo/develop/include/us_hydrodyn_saxs.h
    M us_somo/develop/include/us_hydrodyn_saxs_hplc.h
    M us_somo/develop/include/us_hydrodyn_saxs_hplc_ciq.h
    M us_somo/develop/include/us_hydrodyn_saxs_hplc_options.h
    A us_somo/develop/include/us_hydrodyn_saxs_hplc_parameters.h
    A us_somo/develop/include/us_hydrodyn_vdw_overlap.h
    M us_somo/develop/include/us_hydrodyn_zeno.h
    M us_somo/develop/include/us_math.h
    M us_somo/develop/include/us_mqt.h
    A us_somo/develop/include/us_plot_zoom.h
    M us_somo/develop/include/us_saxs_util.h
    A us_somo/develop/include/us_unicode.h
    M us_somo/develop/include/us_vector.h
    M us_somo/develop/libus_somo.pro
    M us_somo/develop/src/us3i_plot.cpp
    A us_somo/develop/src/us_arch.cpp
    A us_somo/develop/src/us_average.cpp
    A us_somo/develop/src/us_container.cpp
    A us_somo/develop/src/us_container_grpy.cpp
    A us_somo/develop/src/us_eigen.cpp
    A us_somo/develop/src/us_ffd.cpp
    A us_somo/develop/src/us_fractal_dimension.cpp
    M us_somo/develop/src/us_gzip.cpp
    M us_somo/develop/src/us_hydrodyn.cpp
    M us_somo/develop/src/us_hydrodyn_addresidue.cpp
    M us_somo/develop/src/us_hydrodyn_asa.cpp
    M us_somo/develop/src/us_hydrodyn_batch.cpp
    M us_somo/develop/src/us_hydrodyn_beads.cpp
    M us_somo/develop/src/us_hydrodyn_beads_load.cpp
    M us_somo/develop/src/us_hydrodyn_core.cpp
    A us_somo/develop/src/us_hydrodyn_dad.cpp
    A us_somo/develop/src/us_hydrodyn_dad_baseline_best.cpp
    A us_somo/develop/src/us_hydrodyn_dad_ciq.cpp
    A us_somo/develop/src/us_hydrodyn_dad_cistarq.cpp
    A us_somo/develop/src/us_hydrodyn_dad_conc.cpp
    A us_somo/develop/src/us_hydrodyn_dad_conc_csv_frames.cpp
    A us_somo/develop/src/us_hydrodyn_dad_conc_load.cpp
    A us_somo/develop/src/us_hydrodyn_dad_dctr.cpp
    A us_somo/develop/src/us_hydrodyn_dad_fit.cpp
    A us_somo/develop/src/us_hydrodyn_dad_fit_ga.cpp
    A us_somo/develop/src/us_hydrodyn_dad_fit_global.cpp
    A us_somo/develop/src/us_hydrodyn_dad_fit_gsm.cpp
    A us_somo/develop/src/us_hydrodyn_dad_gauss_mode.cpp
    A us_somo/develop/src/us_hydrodyn_dad_gg.cpp
    A us_somo/develop/src/us_hydrodyn_dad_gui.cpp
    A us_somo/develop/src/us_hydrodyn_dad_makeiq.cpp
    A us_somo/develop/src/us_hydrodyn_dad_modes.cpp
    A us_somo/develop/src/us_hydrodyn_dad_modes_baseline2.cpp
    A us_somo/develop/src/us_hydrodyn_dad_modes_bb.cpp
    A us_somo/develop/src/us_hydrodyn_dad_modes_guinier.cpp
    A us_somo/develop/src/us_hydrodyn_dad_modes_powerfit.cpp
    A us_somo/develop/src/us_hydrodyn_dad_modes_wheel.cpp
    A us_somo/develop/src/us_hydrodyn_dad_movie.cpp
    A us_somo/develop/src/us_hydrodyn_dad_nth.cpp
    A us_somo/develop/src/us_hydrodyn_dad_options.cpp
    A us_somo/develop/src/us_hydrodyn_dad_p3d.cpp
    A us_somo/develop/src/us_hydrodyn_dad_parameters.cpp
    A us_somo/develop/src/us_hydrodyn_dad_plots.cpp
    A us_somo/develop/src/us_hydrodyn_dad_scale_trend.cpp
    A us_somo/develop/src/us_hydrodyn_dad_simulate.cpp
    A us_somo/develop/src/us_hydrodyn_dad_stack.cpp
    A us_somo/develop/src/us_hydrodyn_dad_svd.cpp
    A us_somo/develop/src/us_hydrodyn_dad_util.cpp
    A us_somo/develop/src/us_hydrodyn_fractal_dimension.cpp
    A us_somo/develop/src/us_hydrodyn_fractal_dimension_options.cpp
    M us_somo/develop/src/us_hydrodyn_grpy.cpp
    M us_somo/develop/src/us_hydrodyn_hydro_zeno.cpp
    M us_somo/develop/src/us_hydrodyn_info.cpp
    M us_somo/develop/src/us_hydrodyn_load.cpp
    A us_somo/develop/src/us_hydrodyn_mals.cpp
    A us_somo/develop/src/us_hydrodyn_mals_baseline_best.cpp
    A us_somo/develop/src/us_hydrodyn_mals_ciq.cpp
    A us_somo/develop/src/us_hydrodyn_mals_cistarq.cpp
    A us_somo/develop/src/us_hydrodyn_mals_conc.cpp
    A us_somo/develop/src/us_hydrodyn_mals_conc_csv_frames.cpp
    A us_somo/develop/src/us_hydrodyn_mals_conc_load.cpp
    A us_somo/develop/src/us_hydrodyn_mals_dctr.cpp
    A us_somo/develop/src/us_hydrodyn_mals_fit.cpp
    A us_somo/develop/src/us_hydrodyn_mals_fit_ga.cpp
    A us_somo/develop/src/us_hydrodyn_mals_fit_global.cpp
    A us_somo/develop/src/us_hydrodyn_mals_fit_gsm.cpp
    A us_somo/develop/src/us_hydrodyn_mals_gauss_mode.cpp
    A us_somo/develop/src/us_hydrodyn_mals_gg.cpp
    A us_somo/develop/src/us_hydrodyn_mals_gui.cpp
    A us_somo/develop/src/us_hydrodyn_mals_makeiq.cpp
    A us_somo/develop/src/us_hydrodyn_mals_modes.cpp
    A us_somo/develop/src/us_hydrodyn_mals_modes_bb.cpp
    A us_somo/develop/src/us_hydrodyn_mals_modes_guinier.cpp
    A us_somo/develop/src/us_hydrodyn_mals_modes_wheel.cpp
    A us_somo/develop/src/us_hydrodyn_mals_movie.cpp
    A us_somo/develop/src/us_hydrodyn_mals_nth.cpp
    A us_somo/develop/src/us_hydrodyn_mals_options.cpp
    A us_somo/develop/src/us_hydrodyn_mals_p3d.cpp
    A us_somo/develop/src/us_hydrodyn_mals_parameters.cpp
    A us_somo/develop/src/us_hydrodyn_mals_plots.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_baseline_best.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_ciq.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_cistarq.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_conc.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_conc_csv_frames.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_conc_load.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_dctr.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_fit.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_fit_ga.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_fit_global.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_fit_gsm.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_gauss_mode.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_gg.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_gui.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_makeiq.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_modes.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_modes_bb.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_modes_guinier.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_modes_scale.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_modes_scroll.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_modes_wheel.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_movie.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_nth.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_options.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_p3d.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_parameters.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_plots.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_scale_trend.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_simulate.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_stack.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_svd.cpp
    A us_somo/develop/src/us_hydrodyn_mals_saxs_util.cpp
    A us_somo/develop/src/us_hydrodyn_mals_scale_trend.cpp
    A us_somo/develop/src/us_hydrodyn_mals_simulate.cpp
    A us_somo/develop/src/us_hydrodyn_mals_stack.cpp
    A us_somo/develop/src/us_hydrodyn_mals_svd.cpp
    A us_somo/develop/src/us_hydrodyn_mals_util.cpp
    M us_somo/develop/src/us_hydrodyn_misc.cpp
    M us_somo/develop/src/us_hydrodyn_sas_options_guinier.cpp
    M us_somo/develop/src/us_hydrodyn_sas_options_saxs.cpp
    M us_somo/develop/src/us_hydrodyn_save.cpp
    M us_somo/develop/src/us_hydrodyn_saxs.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_buffer.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_external.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_fits.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_guinier.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_hplc.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_hplc_baseline_best.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_hplc_bl.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_hplc_ciq.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_hplc_conc_csv_frames.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_hplc_dctr.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_hplc_gauss_mode.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_hplc_gui.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_hplc_makeiq.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_bb.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_hplc_movie.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_hplc_nth.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_hplc_options.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_hplc_p3d.cpp
    A us_somo/develop/src/us_hydrodyn_saxs_hplc_parameters.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_hplc_plots.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_hplc_simulate.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_hplc_svd.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_hplc_util.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_load_csv.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_loads.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_pr.cpp
    M us_somo/develop/src/us_hydrodyn_script.cpp
    M us_somo/develop/src/us_hydrodyn_settings.cpp
    M us_somo/develop/src/us_hydrodyn_supc.cpp
    M us_somo/develop/src/us_hydrodyn_util.cpp
    A us_somo/develop/src/us_hydrodyn_vdw_overlap.cpp
    M us_somo/develop/src/us_hydrodyn_write.cpp
    M us_somo/develop/src/us_hydrodyn_zeno.cpp
    M us_somo/develop/src/us_math.cpp
    M us_somo/develop/src/us_mqt.cpp
    A us_somo/develop/src/us_plot_zoom.cpp
    M us_somo/develop/src/us_saxs_util.cpp
    M us_somo/develop/src/us_saxs_util_static.cpp
    M us_somo/develop/src/us_vector.cpp

  Log Message:
  -----------
  somo auc2024 updates

  Commit: b488fb68e30bbf1f40145f3734fb095094fc04a9
      https://github.com/ehb54/ultrascan3/commit/b488fb68e30bbf1f40145f3734fb095094fc04a9
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M us_somo/develop/src/us_hydrodyn_asab1.cpp

  Log Message:
  -----------
  sscanf() return value checking to satisify codeql

  Commit: bd542ac6ca7423ecd501b3cd34ce180d3e9ae0d5
      https://github.com/ehb54/ultrascan3/commit/bd542ac6ca7423ecd501b3cd34ce180d3e9ae0d5
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    A us_somo/somo/doc/manual/somo/Fractal dimension_results.png
    A us_somo/somo/doc/manual/somo/Fractal dimension_results_noRg_over_D.png
    A us_somo/somo/doc/manual/somo/RGD_K1.png
    A us_somo/somo/doc/manual/somo/RGD_K2.png
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  Update README.md

Add license info

  Commit: 4d0c27fae33899f951276dd2fd93c5f5312139c0
      https://github.com/ehb54/ultrascan3/commit/4d0c27fae33899f951276dd2fd93c5f5312139c0
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M us_somo/etc/somo.atom.new
    M us_somo/etc/somo.config.new
    M us_somo/etc/somo.defaults.new
    M us_somo/etc/somo.residue.new

  Log Message:
  -----------
  updated config files

  Commit: 3812128b296a29211b218f5e8357ae0e1cee052c
      https://github.com/ehb54/ultrascan3/commit/3812128b296a29211b218f5e8357ae0e1cee052c
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M us_somo/develop/src/us_config.cpp

  Log Message:
  -----------
  windows default browser ie->edge

  Commit: 548c708c4965677bcc6a699640686e323b8ccd3c
      https://github.com/ehb54/ultrascan3/commit/548c708c4965677bcc6a699640686e323b8ccd3c
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M us_somo/develop/src/us_config.cpp
    M us_somo/develop/src/us_help.cpp

  Log Message:
  -----------
  for windows only - help to openurl & config_list.browser from qsetting

  Commit: 2aac9c17621345ffe8ca9673901b7104f52748b1
      https://github.com/ehb54/ultrascan3/commit/2aac9c17621345ffe8ca9673901b7104f52748b1
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M us_somo/develop/src/us_help.cpp

  Log Message:
  -----------
  for windows only - remove openurl usage to allow user to config their browser for somo help

  Commit: 18896a2bf3121f8d03bbb10032a3f36f6c55f339
      https://github.com/ehb54/ultrascan3/commit/18896a2bf3121f8d03bbb10032a3f36f6c55f339
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_abde/us_norm_profile.h

  Log Message:
  -----------
  us_norm_profile: add method to normalize the profile by either the maximum peak or user selected point

  Commit: 3a97060751a919ad8201f039cb819c47dce809f6
      https://github.com/ehb54/ultrascan3/commit/3a97060751a919ad8201f039cb819c47dce809f6
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp

  Log Message:
  -----------
  us_norm_profile: fixed the issue with the last point offset in the normalized curve

  Commit: 0f61b1664249dc0a261fa2a460a408668d40b383
      https://github.com/ehb54/ultrascan3/commit/0f61b1664249dc0a261fa2a460a408668d40b383
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp

  Log Message:
  -----------
  us_norm_profile: fixed the issue of resetting the min and max values of radius that already set when the user clicks on the limit radius checkbox, and fixed the similar inssue with normalizing on the point selected by the user or maximum peak.

  Commit: 2e5595c3f01e61043d0fbb583864b9acae303de4
      https://github.com/ehb54/ultrascan3/commit/2e5595c3f01e61043d0fbb583864b9acae303de4
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp

  Log Message:
  -----------
  us_norm_profile: set the pushbutton background color to the default after picking the limiting radius

  Commit: c6c4b6b69be1ba58dbcd128d72dff7b62e03d4a7
      https://github.com/ehb54/ultrascan3/commit/c6c4b6b69be1ba58dbcd128d72dff7b62e03d4a7
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M programs/us_legacy_converter/us_legacy_converter.cpp

  Log Message:
  -----------
  us_legacy_converter: fixed the issue with different filename petterns for interference and other types

  Commit: 76158885b73ab621ac8602f09618b5e4305b283a
      https://github.com/ehb54/ultrascan3/commit/76158885b73ab621ac8602f09618b5e4305b283a
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M programs/us_legacy_converter/us_legacy_converter.cpp

  Log Message:
  -----------
  us_legacy_converter: edited the error messanges

  Commit: fc02eba2cb59afaff4b0d71b63200c5074b2f914
      https://github.com/ehb54/ultrascan3/commit/fc02eba2cb59afaff4b0d71b63200c5074b2f914
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h

  Log Message:
  -----------
  us_pseudo_absorbance/us_convert_scan: updated to the new version

  Commit: 0fdd4921f449fb635510a03d4007655608e63005
      https://github.com/ehb54/ultrascan3/commit/0fdd4921f449fb635510a03d4007655608e63005
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h

  Log Message:
  -----------
  us_pseudo_absorbance/us_convert_scan: removed the buffer counter used in buffer averaging tools

  Commit: 3ad3e9a15dc47378267f1b055685de928a09797e
      https://github.com/ehb54/ultrascan3/commit/3ad3e9a15dc47378267f1b055685de928a09797e
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp

  Log Message:
  -----------
  us_pseudo_absorbance/us_convert_scan: modify the layout

  Commit: 8acd02b601e2517a2f40cd466105b1a9428a783c
      https://github.com/ehb54/ultrascan3/commit/8acd02b601e2517a2f40cd466105b1a9428a783c
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h

  Log Message:
  -----------
  us_pseudo_absorbance/us_convert_scan: compute reference data scan by scan. centered combobox texts. there is a bug that when a new reference triple selected, absorbance data not updated correctly

  Commit: 34b0084cadbb1e1febbf2c5793bf607d96ab981b
      https://github.com/ehb54/ultrascan3/commit/34b0084cadbb1e1febbf2c5793bf607d96ab981b
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h

  Log Message:
  -----------
  us_pseudo_absorbance/us_convert_scan: fixed saving pseudo-absorbance run

  Commit: 3dd40f7f4c0072e5a5353b512090537747adc1d4
      https://github.com/ehb54/ultrascan3/commit/3dd40f7f4c0072e5a5353b512090537747adc1d4
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h

  Log Message:
  -----------
  us_pseudo_absorbance/us_convert_scan: add scan counter, add aligning method to center all qwtcounters

  Commit: 3fc8927b64f92b13c5101f550b06860da0b28740
      https://github.com/ehb54/ultrascan3/commit/3fc8927b64f92b13c5101f550b06860da0b28740
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp

  Log Message:
  -----------
  us_pseudo_absorbance/us_convert_scan: set back a fixed size to scan counters

  Commit: b845d54f70b525402122c5d7dd283febd844ebc0
      https://github.com/ehb54/ultrascan3/commit/b845d54f70b525402122c5d7dd283febd844ebc0
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h

  Log Message:
  -----------
  us_pseudo_absorbance/us_convert_scan: add lower_scan_range and upper_scan_range to handle scan control and edit the saving function in order to support it

  Commit: 223e905b4fa6e306151983838d99b0dffb0ace52
      https://github.com/ehb54/ultrascan3/commit/223e905b4fa6e306151983838d99b0dffb0ace52
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h

  Log Message:
  -----------
  us_pseudo_absorbance/us_convert_scan: add functions to load a run from both local disk and database

  Commit: 2dbfd3be6c8edc1ccc8c48cf3344f3a0c00cefb0
      https://github.com/ehb54/ultrascan3/commit/2dbfd3be6c8edc1ccc8c48cf3344f3a0c00cefb0
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp

  Log Message:
  -----------
  us_convert_scan: fixed the issue with loaded runid

  Commit: e01bc1b26b562bff13701e7960a126c8904c83ea
      https://github.com/ehb54/ultrascan3/commit/e01bc1b26b562bff13701e7960a126c8904c83ea
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h

  Log Message:
  -----------
  us_convert_scan: removed smoothing, added od threshol cotrol, added plotting both intensity and reference scan chechbox

  Commit: 1ac9f3a15066092e631c131469690942e52f44fc
      https://github.com/ehb54/ultrascan3/commit/1ac9f3a15066092e631c131469690942e52f44fc
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h

  Log Message:
  -----------
  us_convert_scan: debug max_OD issue

  Commit: e50e939a7de746daf96899c00efa6d134c956cb5
      https://github.com/ehb54/ultrascan3/commit/e50e939a7de746daf96899c00efa6d134c956cb5
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M programs/us_pseudo_absorbance/us_add_refScan.cpp
    M programs/us_pseudo_absorbance/us_add_refScan.h

  Log Message:
  -----------
  us_pseudo_absorbance/us_add_refScan: new GUI layout, add saving reference scans data into a csv file

  Commit: f0360cb4d148714097e1cd9ee9083b99635dd21a
      https://github.com/ehb54/ultrascan3/commit/f0360cb4d148714097e1cd9ee9083b99635dd21a
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h

  Log Message:
  -----------
  us_pseudo_absorbance/us_convert_scan: initialize loading the reference scan from a csv file

  Commit: cf61eac008ebfa6550c674be1144d06f4e2cdbef
      https://github.com/ehb54/ultrascan3/commit/cf61eac008ebfa6550c674be1144d06f4e2cdbef
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h

  Log Message:
  -----------
  us_pseudo_absorbance/us_convert_scan: add highlighting, used data embeded into table and combo items to specify the reference scans of each channel

  Commit: be9d4fc20c0a637c3415145352d35de7f92c3596
      https://github.com/ehb54/ultrascan3/commit/be9d4fc20c0a637c3415145352d35de7f92c3596
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M programs/us_pseudo_absorbance/us_add_refScan.cpp

  Log Message:
  -----------
  us_add_refScan.cpp: update GUI

  Commit: 819a3f3cec75c7d99382acb1cb0395d48022f1ce
      https://github.com/ehb54/ultrascan3/commit/819a3f3cec75c7d99382acb1cb0395d48022f1ce
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M programs/us_pseudo_absorbance/us_pseudo_absorbance.cpp

  Log Message:
  -----------
  us_add_refScan.cpp: renamed titles

  Commit: 8d8dd4a740e7a5a51aa4d28318198cb9705eb015
      https://github.com/ehb54/ultrascan3/commit/8d8dd4a740e7a5a51aa4d28318198cb9705eb015
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h

  Log Message:
  -----------
  us_pseudo_absorbance/us_convert_scan: centered items text, embed wavl_id into table items so that we can track of changes after selecting a new item

  Commit: bfd67f45d4a67d6d1a7bef97b0d1316cc78a61f7
      https://github.com/ehb54/ultrascan3/commit/bfd67f45d4a67d6d1a7bef97b0d1316cc78a61f7
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2024-08-03 (Sat, 03 Aug 2024)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp

  Log Message:
  -----------
  us_convert_scan: update messages

Compare: https://github.com/ehb54/ultrascan3/compare/691af45251c3...bfd67f45d4a6

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