[us-commits] [ehb54/ultrascan3] ef65db: GMP : Data from local Disk -- initial work in 1. E...
Borries Demeler
noreply at github.com
Sun Dec 8 16:05:41 MST 2024
Branch: refs/heads/master
Home: https://github.com/ehb54/ultrascan3
Commit: ef65dbedbfa23c2adf450048d6e7d861911214b4
https://github.com/ehb54/ultrascan3/commit/ef65dbedbfa23c2adf450048d6e7d861911214b4
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-09-30 (Mon, 30 Sep 2024)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M utils/us_run_protocol.h
Log Message:
-----------
GMP : Data from local Disk -- initial work in 1. EXP. stage ...
Commit: ff068bb0eb5c502656fe05af1dd3f4741c26abfa
https://github.com/ehb54/ultrascan3/commit/ff068bb0eb5c502656fe05af1dd3f4741c26abfa
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-01 (Tue, 01 Oct 2024)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP : Data from local Disk -- more work on submission of the 'autoflow' run in 1. EXP. stage ...
Commit: 63365f718f5ca332c1080362c81d6c691346077b
https://github.com/ehb54/ultrascan3/commit/63365f718f5ca332c1080362c81d6c691346077b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-02 (Wed, 02 Oct 2024)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
[SQL for ] -- GMP : Data from local Disk -- [bug fixes] more work on submission of the 'autoflow' run in 1. EXP. stage ...
Commit: 64ed28cebb9045c0970fb0f9712730201b148db1
https://github.com/ehb54/ultrascan3/commit/64ed28cebb9045c0970fb0f9712730201b148db1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-02 (Wed, 02 Oct 2024)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
Log Message:
-----------
GMP : Data from local Disk -- [bug fixes1] more work on submission of the 'autoflow' run in 1. EXP. stage ...
Commit: 68794666b196d9f89f9d46f29538bece2df45f80
https://github.com/ehb54/ultrascan3/commit/68794666b196d9f89f9d46f29538bece2df45f80
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-02 (Wed, 02 Oct 2024)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
Log Message:
-----------
GMP : Data from local Disk -- [bug fixes2] more work on submission of the 'autoflow' run in 1. EXP. stage ...
Commit: a9f09822926f76ed4da4e14b3b84115ddcef2c71
https://github.com/ehb54/ultrascan3/commit/a9f09822926f76ed4da4e14b3b84115ddcef2c71
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-02 (Wed, 02 Oct 2024)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
Log Message:
-----------
GMP : Data from local Disk -- [bug fixes3] more work on submission of the 'autoflow' run in 1. EXP. stage ...
Commit: d375f5363fef31b0a1cbed1388620d9647a0665d
https://github.com/ehb54/ultrascan3/commit/d375f5363fef31b0a1cbed1388620d9647a0665d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-02 (Wed, 02 Oct 2024)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
Log Message:
-----------
GMP : Data from local Disk -- [bug fixes3a] more work on submission of the 'autoflow' run in 1. EXP. stage ...
Commit: 27ee749aabb44427e33efde82a916eaf7fb87939
https://github.com/ehb54/ultrascan3/commit/27ee749aabb44427e33efde82a916eaf7fb87939
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-03 (Thu, 03 Oct 2024)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP : Data from local Disk -- set dataSource explicitly in 1. EXP for later ease of processing ...
Commit: 011bf5f21e2326a9db9d073276102c629aff1e1c
https://github.com/ehb54/ultrascan3/commit/011bf5f21e2326a9db9d073276102c629aff1e1c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-04 (Fri, 04 Oct 2024)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
GMP : Data from local Disk -- current bug fixes.. ...
Commit: 33218275bb8a408cd5cf3d95c4fc5c45da35d099
https://github.com/ehb54/ultrascan3/commit/33218275bb8a408cd5cf3d95c4fc5c45da35d099
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-04 (Fri, 04 Oct 2024)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment.pro
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP : Data from local Disk -- further development; inherit minimally required information from uploaded data from disk...
Commit: f98d2a6108fb5d7aac3768ea7f8b1e20d7f5b7b0
https://github.com/ehb54/ultrascan3/commit/f98d2a6108fb5d7aac3768ea7f8b1e20d7f5b7b0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-06 (Sun, 06 Oct 2024)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP : Data from local Disk -- critical information from uploaded data, either single-wvl, or MWL, is properly inherited for generation of the consistent protocol; this inheritance is neccessary for the proper port into the entire GMP framework...
Commit: 8de3cdf6f50554934232f2120408f512737e1393
https://github.com/ehb54/ultrascan3/commit/8de3cdf6f50554934232f2120408f512737e1393
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-07 (Mon, 07 Oct 2024)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP : Data from local Disk -- [ more on.. ] critical information from uploaded data, either single-wvl, or MWL, is properly inherited for generation of the consistent protocol; this inheritance is neccessary for the proper port into the entire GMP framework...
Commit: 7be8d707373f726ac5797dd59b5c97adc1806e6c
https://github.com/ehb54/ultrascan3/commit/7be8d707373f726ac5797dd59b5c97adc1806e6c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-07 (Mon, 07 Oct 2024)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_edit/us_edit.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
GMP : Data from local Disk -- change of the syntax of some stored procs at different stages to not rely on the runID and/or Optima name - there will be no of these for the GMP runs based on imported from disk data...
Commit: 0b486a08efd565879adcf63b767693732a5aebf0
https://github.com/ehb54/ultrascan3/commit/0b486a08efd565879adcf63b767693732a5aebf0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-09 (Wed, 09 Oct 2024)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M utils/us_run_protocol.cpp
Log Message:
-----------
GMP : Data from local Disk -- when regular protocol uploaded after the source was set to 'FromDisk' & data imported, do proper cleanup of the internals/gui for proper operation...
Commit: ff4267894662cc9e411e26416fd70f13418a804c
https://github.com/ehb54/ultrascan3/commit/ff4267894662cc9e411e26416fd70f13418a804c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-10 (Thu, 10 Oct 2024)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP : Data from local Disk [.auc] -- enable to load & process also combined RI+IP data...
Commit: 6f90f67a2a073338fcd8bed11033f4055622487b
https://github.com/ehb54/ultrascan3/commit/6f90f67a2a073338fcd8bed11033f4055622487b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-10 (Thu, 10 Oct 2024)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- addreseed problem in ticket #369 [DUPLICATE] - oncorrect filenames were generated for combined RI+IP types, was not possible to eSign...
Commit: 79c621074606707565452dd5f2c6569e9ee66301
https://github.com/ehb54/ultrascan3/commit/79c621074606707565452dd5f2c6569e9ee66301
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-11 (Fri, 11 Oct 2024)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP : Data from local Disk [.auc] -- manually incorporated changes from branch #357 which existed at the time of creating branch #367...
Commit: 7ca9363e061b5e8a454c02ff2a7e291d339ae93e
https://github.com/ehb54/ultrascan3/commit/7ca9363e061b5e8a454c02ff2a7e291d339ae93e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-13 (Sun, 13 Oct 2024)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- update for audit trail...
Commit: 2f0c7e64cfa24f18d7807bfd8f56abb36d64f02b
https://github.com/ehb54/ultrascan3/commit/2f0c7e64cfa24f18d7807bfd8f56abb36d64f02b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-14 (Mon, 14 Oct 2024)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP : Data from local Disk [.auc] -- informing message on the important parameters of the data upon upload, and comprehensive check for correspondence between the protocol and data uploaded before submission...
Commit: 1ceab41892793b2aae8de7395717fa29494d6d99
https://github.com/ehb54/ultrascan3/commit/1ceab41892793b2aae8de7395717fa29494d6d99
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-15 (Tue, 15 Oct 2024)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- append the runID with the GMP run number to make it unique before DB saving in case same data from disk analyses many times...
Commit: b89e524abb37eeb765ff1f2fb0a6b1f4c7399dc7
https://github.com/ehb54/ultrascan3/commit/b89e524abb37eeb765ff1f2fb0a6b1f4c7399dc7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-15 (Tue, 15 Oct 2024)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- for these runs, show 'Optima Run Status' as 'N/A' in the Run Manager...
Commit: a8927c0ed3742f1a1579d568988263bb9b931766
https://github.com/ehb54/ultrascan3/commit/a8927c0ed3742f1a1579d568988263bb9b931766
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-15 (Tue, 15 Oct 2024)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- [bug fix for ..] append the runID with the GMP run number to make it unique before DB saving in case same data from disk analyses many times...
Commit: 840dabf114615f39a3ed679ec6c7a6edeeaa536f
https://github.com/ehb54/ultrascan3/commit/840dabf114615f39a3ed679ec6c7a6edeeaa536f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-18 (Fri, 18 Oct 2024)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- removed restriction of 50 chars in length for the runName in the GMP framework - several last characters are critially important as they include either the run# from Optima, or differentiate data coming form Disk load; ...
Commit: 5ae09132eade1954e16cf1c23941f19a53586f48
https://github.com/ehb54/ultrascan3/commit/5ae09132eade1954e16cf1c23941f19a53586f48
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-31 (Thu, 31 Oct 2024)
Changed paths:
M .github/workflows/codeql-analysis.yml
M LICENSE.txt
M admin/codeql/docker/docker/Dockerfile
M admin/codeql/docker/dockerdev/Dockerfile
M admin/release/centos7/Dockerfile
M admin/release/redhat/Dockerfile
M admin/release/ubuntu/Dockerfile
M alpha/us.cpp
M doc/manual/advanced_config.body
M doc/manual/convert.body
M doc/manual/ultrascan3.txt
M gui/us_license.cpp
M gui/us_license.h
M library.pri
M programs/us/us_de_DE.ts
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_edit/us_edit.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M us_somo/attic/INSTALL
M us_somo/develop/src/us_hydrodyn_dad.cpp
M us_somo/develop/src/us_hydrodyn_mals.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc.cpp
M us_somo/develop/src/us_util.cpp
M us_somo/extra/haddock/bin_i73/mpi/runjob
M us_somo/somo/doc/manual/somo/IntegralBaselineTheory.html
M us_somo/somo/doc/manual/somo/baseline_best.html
M us_somo/somo/doc/manual/somo/copyright.html
M us_somo/somo/doc/manual/somo/cormap.html
M us_somo/somo/doc/manual/somo/dad_parameters.html
M us_somo/somo/doc/manual/somo/fractal_dimension_options.html
M us_somo/somo/doc/manual/somo/mals_options.html
M us_somo/somo/doc/manual/somo/mals_parameters.html
M us_somo/somo/doc/manual/somo/mals_saxs_options.html
M us_somo/somo/doc/manual/somo/saxs_hplc_Gaussian_theory.html
M us_somo/somo/doc/manual/somo/saxs_hplc_ciq.html
M us_somo/somo/doc/manual/somo/saxs_hplc_conc_csv_frames.html
M us_somo/somo/doc/manual/somo/saxs_hplc_dctr.html
M us_somo/somo/doc/manual/somo/saxs_hplc_nth.html
M us_somo/somo/doc/manual/somo/saxs_hplc_options.html
M us_somo/somo/doc/manual/somo/saxs_hplc_p3d.html
M us_somo/somo/doc/manual/somo/saxs_hplc_parameters.html
M us_somo/somo/doc/manual/somo/saxs_ift.html
M us_somo/somo/doc/manual/somo/somo.html
M us_somo/somo/doc/manual/somo/somo_BEST_Analysis.html
M us_somo/somo/doc/manual/somo/somo_BEST_setup.html
M us_somo/somo/doc/manual/somo/somo_Dammin_Dammif_bead_model_properties.html
M us_somo/somo/doc/manual/somo/somo_SAXS_search.html
M us_somo/somo/doc/manual/somo/somo_add_saxs.html
M us_somo/somo/doc/manual/somo/somo_addatom.html
M us_somo/somo/doc/manual/somo/somo_addhybridization.html
M us_somo/somo/doc/manual/somo/somo_advanced_config.html
M us_somo/somo/doc/manual/somo/somo_anaflex_options.html
M us_somo/somo/doc/manual/somo/somo_asa.html
M us_somo/somo/doc/manual/somo/somo_batch.html
M us_somo/somo/doc/manual/somo/somo_bd_options.html
M us_somo/somo/doc/manual/somo/somo_bead_model_format.html
M us_somo/somo/doc/manual/somo/somo_bead_output.html
M us_somo/somo/doc/manual/somo/somo_cluster.html
M us_somo/somo/doc/manual/somo/somo_cluster_advanced_options.html
M us_somo/somo/doc/manual/somo/somo_cluster_config.html
M us_somo/somo/doc/manual/somo/somo_cluster_dmd.html
M us_somo/somo/doc/manual/somo/somo_cluster_results.html
M us_somo/somo/doc/manual/somo/somo_cluster_status.html
M us_somo/somo/doc/manual/somo/somo_cluster_submit.html
M us_somo/somo/doc/manual/somo/somo_comparative.html
M us_somo/somo/doc/manual/somo/somo_dammin_opts.html
M us_somo/somo/doc/manual/somo/somo_dmd_options.html
M us_somo/somo/doc/manual/somo/somo_file.html
M us_somo/somo/doc/manual/somo/somo_grid.html
M us_somo/somo/doc/manual/somo/somo_grid_overlap.html
M us_somo/somo/doc/manual/somo/somo_hydro.html
M us_somo/somo/doc/manual/somo/somo_hydro_expert_mode.html
M us_somo/somo/doc/manual/somo/somo_hydro_zeno.html
M us_somo/somo/doc/manual/somo/somo_hydro_zeno.html_old
M us_somo/somo/doc/manual/somo/somo_mals.html
M us_somo/somo/doc/manual/somo/somo_mals_saxs.html
M us_somo/somo/doc/manual/somo/somo_misc.html
M us_somo/somo/doc/manual/somo/somo_overlap.html
M us_somo/somo/doc/manual/somo/somo_pdb_editor.html
M us_somo/somo/doc/manual/somo/somo_pdb_editor_merge.html
M us_somo/somo/doc/manual/somo/somo_pdb_parsing.html
M us_somo/somo/doc/manual/somo/somo_pdb_parsing_expert_mode.html
M us_somo/somo/doc/manual/somo/somo_pdb_visualization.html
M us_somo/somo/doc/manual/somo/somo_residue.html
M us_somo/somo/doc/manual/somo/somo_results.html
M us_somo/somo/doc/manual/somo/somo_save.html
M us_somo/somo/doc/manual/somo/somo_saxs.html
M us_somo/somo/doc/manual/somo/somo_saxs_buffer.html
M us_somo/somo/doc/manual/somo/somo_saxs_conc.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_baseline_corr.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_fit.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_linear_baselines.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_movie.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_skewedGauss.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_svd.html
M us_somo/somo/doc/manual/somo/somo_saxs_iqq_residuals.html
M us_somo/somo/doc/manual/somo/somo_saxs_load_csv.html
M us_somo/somo/doc/manual/somo/somo_saxs_mw.html
M us_somo/somo/doc/manual/somo/somo_saxs_options.html
M us_somo/somo/doc/manual/somo/somo_saxs_residuals.html
M us_somo/somo/doc/manual/somo/somo_show_hydro.html
M us_somo/somo/doc/manual/somo/somo_uv_vis.html
M us_somo/somo/doc/manual/somo/somo_vdw_overlap.html
M us_somo/somo/doc/manual/somo/underconstruction.html
M us_somo/somo/doc/manual/somo/uv_vis_options.html
M utils/libus_utils.pro
A utils/us_archive.cpp
A utils/us_archive.h
Log Message:
-----------
Merge pull request #149 from ehb54/master
bring branch alexey-dev-issue367 (data-from-disk integration) to the latest master state
Commit: 53b56c85fb0fb5285255581640cc90e427338ddf
https://github.com/ehb54/ultrascan3/commit/53b56c85fb0fb5285255581640cc90e427338ddf
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-31 (Thu, 31 Oct 2024)
Changed paths:
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
Merge pull request #151 from ehb54/master
pull the rest of master into alexey-dev-issue367
Commit: 9c415f589b74b0c8ec396a473b85996c0b12d9ec
https://github.com/ehb54/ultrascan3/commit/9c415f589b74b0c8ec396a473b85996c0b12d9ec
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-11-04 (Mon, 04 Nov 2024)
Changed paths:
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M utils/us_run_protocol.h
Log Message:
-----------
GMP : Data from local Disk [.auc] -- init. preparations for processing also 'RA' data type; initital import succeeded...
Commit: bf9d824bc796ead5b220a6b5fd9496f42504084f
https://github.com/ehb54/ultrascan3/commit/bf9d824bc796ead5b220a6b5fd9496f42504084f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-11-04 (Mon, 04 Nov 2024)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- skip ref.scan in 3. IMPORT for RA data...
Commit: f3a9f375aedef1a80b3ab0806c9a641b36ba7bc0
https://github.com/ehb54/ultrascan3/commit/f3a9f375aedef1a80b3ab0806c9a641b36ba7bc0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-11-04 (Mon, 04 Nov 2024)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP : Data from local Disk [.auc] -- in GMP report, n/a for runID, source - dataDisk...
Commit: eb2705621b5bc78a0d676e56b0cb1d9714cfb449
https://github.com/ehb54/ultrascan3/commit/eb2705621b5bc78a0d676e56b0cb1d9714cfb449
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-11-04 (Mon, 04 Nov 2024)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP : Data from local Disk [.auc] -- if data were identified as RA, and user tries to uncheck 'Absorbance data' checkbox, issue warning and re-check...
Commit: e837b7ba63fbd095b2a74c45ca9182053e48a876
https://github.com/ehb54/ultrascan3/commit/e837b7ba63fbd095b2a74c45ca9182053e48a876
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-11-06 (Wed, 06 Nov 2024)
Changed paths:
M gui/us_run_details2.cpp
M gui/us_run_details2.h
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP : Data from local Disk [.auc] -- upon upload, read rotor speed, total time, interval between scans (per data-type) etc. & populate into protcol and gui...
Commit: 8c9ad51e19d5aa875c54a2d908643f97ccc14829
https://github.com/ehb54/ultrascan3/commit/8c9ad51e19d5aa875c54a2d908643f97ccc14829
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-11-06 (Wed, 06 Nov 2024)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP : Data from local Disk [.auc] -- upon dataDisk upload, inform user also of inferred rotor speed, duration, #scans per dataType...
Commit: e092aa0936adf8ec47d059f0e1d9fea411459d1e
https://github.com/ehb54/ultrascan3/commit/e092aa0936adf8ec47d059f0e1d9fea411459d1e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-11-06 (Wed, 06 Nov 2024)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_edit/us_edit.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- bugs fixed for: (1) generate User Interactions for RA type {IMPORT, EDIT, ANALYSIS}; (2) correct handling of the case when only 1 channel is analysed...
Commit: a1ed96eb10b09e90a677b993b0d015cc1130e83e
https://github.com/ehb54/ultrascan3/commit/a1ed96eb10b09e90a677b993b0d015cc1130e83e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-11-08 (Fri, 08 Nov 2024)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- bugs fixed for: (1) audit trail info for RA data from disk; (2) determine abs. type automatically...
Commit: 5957fc1d918eaa227ce66e56825c2032ad1dd07e
https://github.com/ehb54/ultrascan3/commit/5957fc1d918eaa227ce66e56825c2032ad1dd07e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-11-08 (Fri, 08 Nov 2024)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- set 'N/A' for ref.scan determination in audit trail & report for RA data-from-disk type...
Commit: 1418c87b23f91734b7a3e4676257f14a1457e15d
https://github.com/ehb54/ultrascan3/commit/1418c87b23f91734b7a3e4676257f14a1457e15d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-11-12 (Tue, 12 Nov 2024)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- prevent wrong behavoir when directory does not contains .auc data...
Commit: 808f7a7fe62540a2e678b22332b9817dd8820403
https://github.com/ehb54/ultrascan3/commit/808f7a7fe62540a2e678b22332b9817dd8820403
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-11-22 (Fri, 22 Nov 2024)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP : Data from local Disk [.auc] -- allow Rotor change; ask for correct rotor while checking data-from-disk option; enforce check for rotor-data consistency (4-hole, not more than 4th channel for data); allow to upload simulated data into A-channel ...
Commit: bcc3770dbb0fedcb4f35933b40441d1a2df960fd
https://github.com/ehb54/ultrascan3/commit/bcc3770dbb0fedcb4f35933b40441d1a2df960fd
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-12-01 (Sun, 01 Dec 2024)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_get_run.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- minor bug and debug stats...
Commit: e95a6d93273e6511bebe28af72c76887a6df3434
https://github.com/ehb54/ultrascan3/commit/e95a6d93273e6511bebe28af72c76887a6df3434
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-12-03 (Tue, 03 Dec 2024)
Changed paths:
M .github/workflows/codeql-analysis.yml
A admin/us_branch/README.md
A admin/us_branch/us_branch.php
A admin/us_branch/utility.php
M gui/us_predict1.cpp
M gui/us_predict1.h
M programs/us_2dsa/us_2dsa.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_convert/us_convert.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_manage_data/us_data_tree.cpp
M programs/us_manage_data/us_data_tree.h
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M utils/us_archive.cpp
M utils/us_archive.h
M utils/us_simparms.cpp
Log Message:
-----------
Merge pull request #160 from ehb54/master
Bring branch alexey-dev-issue367 to the current master state for testing
Commit: 6d96d884446e749623476667e39c01c1d43d17c5
https://github.com/ehb54/ultrascan3/commit/6d96d884446e749623476667e39c01c1d43d17c5
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-12-05 (Thu, 05 Dec 2024)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- a bug fixed for the proper filename: do not add '-dataDISK-XXX' for conventional GMP runs...
Commit: 009eb26c7380e89b580c399f32eec75795b73250
https://github.com/ehb54/ultrascan3/commit/009eb26c7380e89b580c399f32eec75795b73250
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-12-07 (Sat, 07 Dec 2024)
Changed paths:
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.h
M utils/us_xpn_data.cpp
M utils/us_xpn_data.h
Log Message:
-----------
GMP : Empty Timestamp, Instrument not reset -- abort the GMP run at the end of LIV_UPDATE, inform user of violation of the GMP compliance...
Commit: c3be3cd237b3b73289e74473733b9cbfb490f2d6
https://github.com/ehb54/ultrascan3/commit/c3be3cd237b3b73289e74473733b9cbfb490f2d6
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2024-12-08 (Sun, 08 Dec 2024)
Changed paths:
M gui/us_run_details2.cpp
M gui/us_run_details2.h
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.h
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_convert/us_get_run.cpp
M programs/us_edit/us_edit.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment.pro
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.h
M utils/us_run_protocol.cpp
M utils/us_run_protocol.h
M utils/us_xpn_data.cpp
M utils/us_xpn_data.h
Log Message:
-----------
Merge pull request #161 from ehb54/alexey-dev-issue367
Alexey dev issue367: Data-form-disk (RI/RA/S/IP) integration
Compare: https://github.com/ehb54/ultrascan3/compare/a8f4a9fbe6d3...c3be3cd237b3
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