[us-commits] [ehb54/ultrascan3] bc5579: Ensure more accurate speedsteps for complex data
ehb54
noreply at github.com
Fri Dec 13 20:16:16 MST 2024
Branch: refs/heads/release-2024-Q4
Home: https://github.com/ehb54/ultrascan3
Commit: bc5579bd6fd1765c01c2b9b9433c91ec6ae262c1
https://github.com/ehb54/ultrascan3/commit/bc5579bd6fd1765c01c2b9b9433c91ec6ae262c1
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2024-12-04 (Wed, 04 Dec 2024)
Changed paths:
M utils/us_simparms.cpp
Log Message:
-----------
Ensure more accurate speedsteps for complex data
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 64224c4de16c80ac4b4120a62bc0607708343240
https://github.com/ehb54/ultrascan3/commit/64224c4de16c80ac4b4120a62bc0607708343240
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2024-12-04 (Wed, 04 Dec 2024)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
Prevent race condition
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 6182249ce5be8f9cba9d38222c045f8f1350c279
https://github.com/ehb54/ultrascan3/commit/6182249ce5be8f9cba9d38222c045f8f1350c279
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-12-08 (Sun, 08 Dec 2024)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
Log Message:
-----------
GMP : Data from local Disk [.auc] -- fix issues in 4. EDIT stage for Simulated Data...
Commit: 7118b017d57255862416e22fa1a619ce21abbac7
https://github.com/ehb54/ultrascan3/commit/7118b017d57255862416e22fa1a619ce21abbac7
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us_csv_loader: add a static function to read a csv file
Commit: 896a9d27948250d42c5b1aef3f6e9ad716411561
https://github.com/ehb54/ultrascan3/commit/896a9d27948250d42c5b1aef3f6e9ad716411561
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M programs/us_spectrum/us_spectrum.cpp
Log Message:
-----------
us_spectrum: load every columns of a csv file for basis and show the header in the list instead of the file name. Show the header for the target spectrum. Show file name by hovering over each item.
Commit: e026e172b356232f7bf2a8e41ce96ea4b73635d1
https://github.com/ehb54/ultrascan3/commit/e026e172b356232f7bf2a8e41ce96ea4b73635d1
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us_csv_loader: finished the static reading function
Commit: 5aad47d957ceb3b5060401ba5c72990f0bcf61c5
https://github.com/ehb54/ultrascan3/commit/5aad47d957ceb3b5060401ba5c72990f0bcf61c5
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us_csv_loader: move the static function to read a csv file into the CSV_Data class as a public function
Commit: 4494e719ffccb06693c6d51d369d9c8b52ffce11
https://github.com/ehb54/ultrascan3/commit/4494e719ffccb06693c6d51d369d9c8b52ffce11
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us_csv_loader:CSV_Data: add a public function to write the data to a file
Commit: 51ed4e3025b4727979689b97710cbc4dcd7234bf
https://github.com/ehb54/ultrascan3/commit/51ed4e3025b4727979689b97710cbc4dcd7234bf
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us_csv_loader: set table view to interactive. fixed the indentations.
Commit: a10374685883383d91ad59dcd255ef7041ddc48f
https://github.com/ehb54/ultrascan3/commit/a10374685883383d91ad59dcd255ef7041ddc48f
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us_csv_loader: separate the row and column deletion signals. add a new function to check the header independently.
Commit: 495d2088ec4dbe6b874b37de064b96035da8bf00
https://github.com/ehb54/ultrascan3/commit/495d2088ec4dbe6b874b37de064b96035da8bf00
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
Log Message:
-----------
us_csv_loader: get the widget always to appear in the foreground.
Commit: a1b33ff4d32966ea54fd0f3dba269d93e785442c
https://github.com/ehb54/ultrascan3/commit/a1b33ff4d32966ea54fd0f3dba269d93e785442c
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
M gui/us_extinction_gui.cpp
M gui/us_extinction_gui.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_spectrum/us_spectrum.cpp
Log Message:
-----------
CSV_Data is pulled out of the US_CSV_Loader since it stands alone and has complete methods to read and write csv files. All program calling US_CSV_Loader are fixed to be compatible with new changes.
Commit: 0ff8d802555d809785e75b52258430eb980ed9ca
https://github.com/ehb54/ultrascan3/commit/0ff8d802555d809785e75b52258430eb980ed9ca
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- [moree] fix issues in 4. EDIT stage for Simulated Data...
Commit: 56b628611537490128e5d3cdfc85acc0629dfc08
https://github.com/ehb54/ultrascan3/commit/56b628611537490128e5d3cdfc85acc0629dfc08
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
Log Message:
-----------
us_csv_loader: Center the dialog on the page at one-sixth the size of the page.
Commit: 3c2d26bf0aeef05c4eddd6f3370b94e5786faa77
https://github.com/ehb54/ultrascan3/commit/3c2d26bf0aeef05c4eddd6f3370b94e5786faa77
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M utils/libus_utils.pro
A utils/us_csv_data.cpp
A utils/us_csv_data.h
Log Message:
-----------
initialize the us_csv_data class to read and write csv files
Commit: 3a189699241d7e48d8b2c32d3fae0e2c97a4e1c0
https://github.com/ehb54/ultrascan3/commit/3a189699241d7e48d8b2c32d3fae0e2c97a4e1c0
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us_csv_loader: add us_csv_data.h to the header. Set wait cursor as loading the widget
Commit: 75a6931b19ab78223b789b93a799127b58ed396e
https://github.com/ehb54/ultrascan3/commit/75a6931b19ab78223b789b93a799127b58ed396e
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M utils/us_csv_data.cpp
Log Message:
-----------
us_csv_data: resort delimiters
Commit: a0a322329fb6ce6d16534c9b197bf5f079bb49d3
https://github.com/ehb54/ultrascan3/commit/a0a322329fb6ce6d16534c9b197bf5f079bb49d3
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M programs/us_spectrum/us_spectrum.cpp
Log Message:
-----------
us_spectrum: replace deprecated qsort with std:sort function, sprintf with tr function, correct std::minmax_element , fill cb_angle_one list correctly.
Commit: 4b07882dc2a7ecb8b270d1eec242292aadaa46c3
https://github.com/ehb54/ultrascan3/commit/4b07882dc2a7ecb8b270d1eec242292aadaa46c3
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP : Data from local Disk [.auc] -- major fixes in 6. REPORTIN for correct processing of the 'S' data ...
Commit: 86d8de6fa7de2c45aa2b37641398029f374bfb60
https://github.com/ehb54/ultrascan3/commit/86d8de6fa7de2c45aa2b37641398029f374bfb60
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-10 (Tue, 10 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
Log Message:
-----------
us_csv_loade: trim every line then add to the list of lines if it is not empty.
Commit: 5f0bd18cae904153b9377cfcb040f233989d8422
https://github.com/ehb54/ultrascan3/commit/5f0bd18cae904153b9377cfcb040f233989d8422
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-10 (Tue, 10 Dec 2024)
Changed paths:
M utils/us_csv_data.cpp
Log Message:
-----------
us_csv_data: trim lines before parsing. make a header for files that doesn't have one.
Commit: 868c8e1c19c4e1703f0d9b78145617d3771f2b37
https://github.com/ehb54/ultrascan3/commit/868c8e1c19c4e1703f0d9b78145617d3771f2b37
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-10 (Tue, 10 Dec 2024)
Changed paths:
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
Log Message:
-----------
us_spectrum: rename wp.filenameBasis to header in the WavelengthProfile class. Complete writing the csv and dat files
Commit: 8e335b5a7d5e80d7a2f0172d7fa96b43ccca72ed
https://github.com/ehb54/ultrascan3/commit/8e335b5a7d5e80d7a2f0172d7fa96b43ccca72ed
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-10 (Tue, 10 Dec 2024)
Changed paths:
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
Log Message:
-----------
us_spectrum: add the residual data to the csv file
Commit: 961f0fcb99bb8327b1948c1469808898e05d398c
https://github.com/ehb54/ultrascan3/commit/961f0fcb99bb8327b1948c1469808898e05d398c
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-10 (Tue, 10 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
M gui/us_extinction_gui.cpp
M gui/us_extinction_gui.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_spectrum/us_spectrum.cpp
Log Message:
-----------
remove the CSV_Data class from the CSV_Loader and replace with US_CSV_Data from utils and correct everywhere that has used it including: us_extinction, us_mwl_species_fit, us_pseudo_absorbance, and us_spectrum
Commit: fb38e256fbe1cff7ad3e5533524333f47d82febe
https://github.com/ehb54/ultrascan3/commit/fb38e256fbe1cff7ad3e5533524333f47d82febe
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-10 (Tue, 10 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
M utils/us_csv_data.cpp
M utils/us_csv_data.h
Log Message:
-----------
us_csv_loader: replace the csv_write function with the built-in function of the US_CSV_Data class.
Commit: c9998c0d1e56e6ee742c9deb067c85c132b5ec9c
https://github.com/ehb54/ultrascan3/commit/c9998c0d1e56e6ee742c9deb067c85c132b5ec9c
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-11 (Wed, 11 Dec 2024)
Changed paths:
M programs/us_spectrum/us_spectrum.cpp
Log Message:
-----------
us_spectrum: correst filters of the file dialogs
Commit: 42911e1b0d3272e8e6a42bb2d1a68e309c3617d4
https://github.com/ehb54/ultrascan3/commit/42911e1b0d3272e8e6a42bb2d1a68e309c3617d4
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-11 (Wed, 11 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us_csv_loader: replaced the variable reference with pointer in the make_csv_data function. removed variable names in the header file
Commit: 7403f5fc7fb5f0c9577df25a794c11b632fd0030
https://github.com/ehb54/ultrascan3/commit/7403f5fc7fb5f0c9577df25a794c11b632fd0030
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2024-12-11 (Wed, 11 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
M gui/us_extinction_gui.cpp
M gui/us_extinction_gui.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
M utils/libus_utils.pro
A utils/us_csv_data.cpp
A utils/us_csv_data.h
Log Message:
-----------
Merge pull request #162 from samo38/ticket_us_csv_data
US_CSV_Data
Commit: e957ea29cd19afe6163821a9c5c2646ef0771345
https://github.com/ehb54/ultrascan3/commit/e957ea29cd19afe6163821a9c5c2646ef0771345
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-12-12 (Thu, 12 Dec 2024)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- fixes for: (1) when S-data generated with encoded '0' wavelength - abort upload & processing, inform user; (2) possible fix for failing auto-meniscus determination at 4. EDIT for S-data by shifting meniscus search to lower (than ususal Optima-generated data) radial positions; tested on some uploade S-data ...
Commit: 7b8ba3f8020f639727b4c94294cb423e7d7cde70
https://github.com/ehb54/ultrascan3/commit/7b8ba3f8020f639727b4c94294cb423e7d7cde70
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2024-12-12 (Thu, 12 Dec 2024)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
Document change
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 644ed2f79e40cb4037b5bac99a8d386348d2eef9
https://github.com/ehb54/ultrascan3/commit/644ed2f79e40cb4037b5bac99a8d386348d2eef9
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-12-12 (Thu, 12 Dec 2024)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP : 6. REPORTING -- do not show Intansity comparison for models from RA|S|IP data. ...
Commit: 976658353dd3f57a4572ae16704405543c2d0875
https://github.com/ehb54/ultrascan3/commit/976658353dd3f57a4572ae16704405543c2d0875
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-12-13 (Fri, 13 Dec 2024)
Changed paths:
M programs/us_edit/us_edit.cpp
M utils/us_simparms.cpp
Log Message:
-----------
Merge pull request #163 from doluk/speedstep-timestate
Bug fixes/Enhancement us_edit/speedsteps
Commit: 9c767ad3cb32bb06ec7154c9dc229537d218618c
https://github.com/ehb54/ultrascan3/commit/9c767ad3cb32bb06ec7154c9dc229537d218618c
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-12-13 (Fri, 13 Dec 2024)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
Merge pull request #164 from ehb54/alexey-dev-issue367
Alexey dev issue367: Latest changes for Data-upload-from-disk
Commit: 10a73973765ae74c7591bf2886ee8556467db057
https://github.com/ehb54/ultrascan3/commit/10a73973765ae74c7591bf2886ee8556467db057
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-12-13 (Fri, 13 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
M gui/us_extinction_gui.cpp
M gui/us_extinction_gui.h
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
M utils/libus_utils.pro
A utils/us_csv_data.cpp
A utils/us_csv_data.h
M utils/us_simparms.cpp
Log Message:
-----------
Merge pull request #165 from ehb54/master
merge master into release-2024-Q4
Compare: https://github.com/ehb54/ultrascan3/compare/c3be3cd237b3...10a73973765a
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