[us-commits] [ehb54/ultrascan3] 8f70eb: fix to correctly record buffer \"manual\" setting
Borries Demeler
noreply at github.com
Thu May 9 13:23:09 MDT 2024
Branch: refs/heads/demeler-dev
Home: https://github.com/ehb54/ultrascan3
Commit: 8f70eb51348199bb17ab5f302d541240356e18b8
https://github.com/ehb54/ultrascan3/commit/8f70eb51348199bb17ab5f302d541240356e18b8
Author: gegorbet <gegorbet at gmail.com>
Date: 2023-05-11 (Thu, 11 May 2023)
Changed paths:
M gui/us_buffer_gui.cpp
Log Message:
-----------
fix to correctly record buffer \"manual\" setting
Commit: eea2553d52529bab11a774a8db626b21266d1ede
https://github.com/ehb54/ultrascan3/commit/eea2553d52529bab11a774a8db626b21266d1ede
Author: gegorbet <gegorbet at gmail.com>
Date: 2023-05-11 (Thu, 11 May 2023)
Changed paths:
Log Message:
-----------
Merge branch 'master' of github.com:ehb54/ultrascan3
Commit: 44cbf4c7872f2014d8014ece5a829c44d2b8b4f8
https://github.com/ehb54/ultrascan3/commit/44cbf4c7872f2014d8014ece5a829c44d2b8b4f8
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-13 (Sat, 13 May 2023)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
GMP | 2. LIVE_UPD. | 4. EDIT -- add user comments for events: (1) SKIP stage at live_update; (2) manual editing of meniscus at Edit; && add to DB...
Commit: 3aec4c88f753ec1b68a76d36cb39733f9622f515
https://github.com/ehb54/ultrascan3/commit/3aec4c88f753ec1b68a76d36cb39733f9622f515
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-13 (Sat, 13 May 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | 5. REPORT -- slight mods to the User Input:ANALSYS section representation in GMP report ...
Commit: 7d2d2065f4706b5d6cc4ad90c68bdc7fafef1c1d
https://github.com/ehb54/ultrascan3/commit/7d2d2065f4706b5d6cc4ad90c68bdc7fafef1c1d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-14 (Sun, 14 May 2023)
Changed paths:
M programs/us_com_project/us_com_project.pro
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_com_project_academic/us_com_project_academic.pro
A programs/us_esigner_gmp/us_esigner_gmp.cpp
A programs/us_esigner_gmp/us_esigner_gmp.h
A programs/us_esigner_gmp/us_esigner_gmp.pro
A programs/us_esigner_gmp/us_esigner_gmp_main.cpp
Log Message:
-----------
GMP | e-Signatures & E-Sign stand-alone -- basis for e-Signature stage in GMP based on stand-alone eSignGMP program...
Commit: e1a2a2aba20c4860989aa1a322321d2ace2e57ea
https://github.com/ehb54/ultrascan3/commit/e1a2a2aba20c4860989aa1a322321d2ace2e57ea
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-16 (Tue, 16 May 2023)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
Log Message:
-----------
GMP | Run Manager -- for the runs reaching the new e-Signature stage, display them only to reviwers/operator set elsewhere...
Commit: 40985aad1174f87c4db25399655e87de99afb012
https://github.com/ehb54/ultrascan3/commit/40985aad1174f87c4db25399655e87de99afb012
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-16 (Tue, 16 May 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
M programs/us_experiment/us_experiment.pro
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_protocol_dev/us_protocol_dev.pro
M programs/us_protocol_dev/us_protocol_dev_gui.h
Log Message:
-----------
GMP | 1. EXP. | eSigner -- further dev. for eSigning...
Commit: 008566e174f0f90b9702cc91d55760ce2cd51cc1
https://github.com/ehb54/ultrascan3/commit/008566e174f0f90b9702cc91d55760ce2cd51cc1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-16 (Tue, 16 May 2023)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP | 1. EXP. | eSigner -- disable (for now) setting reviwers at the end of 1. EXP...
Commit: bed758da12d318a5514b0e89a8b5d20c1d51cdea
https://github.com/ehb54/ultrascan3/commit/bed758da12d318a5514b0e89a8b5d20c1d51cdea
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-17 (Wed, 17 May 2023)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
Log Message:
-----------
GMP | Manage Run -- some changes to structuring oper./reviewers; development of the gui for eSigner program...
Commit: 2f137ace56eefcb5c8b3641c742de21f4eb8bdfc
https://github.com/ehb54/ultrascan3/commit/2f137ace56eefcb5c8b3641c742de21f4eb8bdfc
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-17 (Wed, 17 May 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
Log Message:
-----------
GMP Report e-Signer -- basic layouts for different admin & e-signers operations...
Commit: 059ee43c3880055d35ff1c5206764fb35405b093
https://github.com/ehb54/ultrascan3/commit/059ee43c3880055d35ff1c5206764fb35405b093
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-18 (Thu, 18 May 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
Log Message:
-----------
GMP Report e-Signer -- further dev....
Commit: dc6f80eeff3d356273ac4481f7c483b7b874f706
https://github.com/ehb54/ultrascan3/commit/dc6f80eeff3d356273ac4481f7c483b7b874f706
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-18 (Thu, 18 May 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
Log Message:
-----------
GMP Report e-Signer -- further dev [1]....ush
Commit: d0ebef50fbea1f9d2b8737cd9d9a0c9d9bf202f5
https://github.com/ehb54/ultrascan3/commit/d0ebef50fbea1f9d2b8737cd9d9a0c9d9bf202f5
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-19 (Fri, 19 May 2023)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
M programs/us_esigner_gmp/us_esigner_gmp.pro
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP Report e-Signer -- further development & integration into GMP framework....
Commit: 14f42b7174cb7ab1fb1aae3d1028b87809d84755
https://github.com/ehb54/ultrascan3/commit/14f42b7174cb7ab1fb1aae3d1028b87809d84755
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-21 (Sun, 21 May 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
Log Message:
-----------
GMP Report e-Signer -- further development & integration into GMP framework [1]....
Commit: a779bfda868295dde2b79ba966637bd7ad323b73
https://github.com/ehb54/ultrascan3/commit/a779bfda868295dde2b79ba966637bd7ad323b73
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-21 (Sun, 21 May 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP -- in-line notes on further dev...
Commit: 084f35d4bc1a72862d790b438febe101fb042ba0
https://github.com/ehb54/ultrascan3/commit/084f35d4bc1a72862d790b438febe101fb042ba0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-23 (Tue, 23 May 2023)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
Log Message:
-----------
GMP | 4. Edit: Manual channel edit -- when atomated meniscus position determonation fails, user clicks 'Edit Selected Cahnnel Manually'; this internal GUI is modified to only deal manually with the passed data for selected channel int he main GUI; i case of MWL, only (single) representative triple is treated && when changes accepted they are propagated to the rest of triples in the channel; Saving of all edited profiles occurs only in the main GUI of 4. EDIT...
Commit: ca09d3069b6228e42cf57259b8799d705e2ae368
https://github.com/ehb54/ultrascan3/commit/ca09d3069b6228e42cf57259b8799d705e2ae368
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-23 (Tue, 23 May 2023)
Changed paths:
M programs/us_convert/us_get_run.cpp
M programs/us_convert/us_get_run.h
Log Message:
-----------
US_Convert -- at the run data deletion, check if it's part of the GMP framework...
Commit: c888250ebd38bf8b54d320a2a8b58b0683710b6a
https://github.com/ehb54/ultrascan3/commit/c888250ebd38bf8b54d320a2a8b58b0683710b6a
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-23 (Tue, 23 May 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
Log Message:
-----------
GMP Report e-Signer -- further development & integration into GMP framework: assigning oper(s) aand reviwer(s) from globally set reviewers & machine operators for uploaded GMP run; tested stored procs for the first time e-Signature record creation....
Commit: fbe92060ff75e9d8c0e6395909586b9b32a4e7ca
https://github.com/ehb54/ultrascan3/commit/fbe92060ff75e9d8c0e6395909586b9b32a4e7ca
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-24 (Wed, 24 May 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
Log Message:
-----------
GMP Report e-Signer -- further development & integration into GMP framework: when eSigning record exists for GMP run, admin can update operator(s) and/or reviewer(s) lists, and the log event is appended to generalized log json....
Commit: 0d2cfe75fb6de89081f8dcbb56a4cf66fb026c41
https://github.com/ehb54/ultrascan3/commit/0d2cfe75fb6de89081f8dcbb56a4cf66fb026c41
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-24 (Wed, 24 May 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
Log Message:
-----------
[small bug fix for ] GMP Report e-Signer -- further development & integration into GMP framework: when eSigning record exists for GMP run, admin can update operator(s) and/or reviewer(s) lists, and the log event is appended to generalized log json....
Commit: 7974cb47a940cc9392d80fdb51309e02ea1da71f
https://github.com/ehb54/ultrascan3/commit/7974cb47a940cc9392d80fdb51309e02ea1da71f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-30 (Tue, 30 May 2023)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP | R&D -- proposed fix for ticket #178; needs testing (as per #178)....
Commit: f37cceb173d78ca9c6c384428e3a918d8565a4b5
https://github.com/ehb54/ultrascan3/commit/f37cceb173d78ca9c6c384428e3a918d8565a4b5
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-30 (Tue, 30 May 2023)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | eSigner -- further development of e-Signature stage; in-line notes on how to conclude 6. REPORT stage; ...
Commit: e9f5c977f01365fa1ecf784cccd488a27852908b
https://github.com/ehb54/ultrascan3/commit/e9f5c977f01365fa1ecf784cccd488a27852908b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-30 (Tue, 30 May 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
Log Message:
-----------
GMP | eSigner -- few bugs fixed; test case created for loading GMP reports with assigned operator(s) && reviewer(s)...
Commit: afdefb7759ab1410a26f11574edc15312fe865f9
https://github.com/ehb54/ultrascan3/commit/afdefb7759ab1410a26f11574edc15312fe865f9
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-31 (Wed, 31 May 2023)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
Log Message:
-----------
GMP | eSigner -- implemented && use test cases to try asynchronous GMP report e-signing; push/append json as reviewer or reviewers add signatures; so far in Db...
Commit: 571bcf10e7e018c9726a3d94cc696ba4d383ef48
https://github.com/ehb54/ultrascan3/commit/571bcf10e7e018c9726a3d94cc696ba4d383ef48
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-31 (Wed, 31 May 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | eSigner -- [for -- ] implemented && use test cases to try asynchronous GMP report e-signing; push/append json as reviewer or reviewers add signatures; [Now writes .PDF of a page containing e-Signatures in the same dir of the downloaded .tar of the GMP Report; there are options of when/how to append to original GMP report, OR do we need to do this at all - we can keep eSignatures .PDF in a separate & existing table dedicated to e-signing dynamics]...
Commit: e818763c9c5230d9b93e2a4420d0d4d2da4715d7
https://github.com/ehb54/ultrascan3/commit/e818763c9c5230d9b93e2a4420d0d4d2da4715d7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-06-01 (Thu, 01 Jun 2023)
Changed paths:
M gui/us_analyte_gui.cpp
M gui/us_buffer_gui.cpp
M gui/us_solution_gui.cpp
Log Message:
-----------
[Buffer, Analytes, Solutions -- ] preclude changing names in any existing records...
Commit: ab8ac97ec39131c6b9ffa225d9cadad7e3005202
https://github.com/ehb54/ultrascan3/commit/ab8ac97ec39131c6b9ffa225d9cadad7e3005202
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-06-01 (Thu, 01 Jun 2023)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP | 1. EXP:2.Lab/Rotor -- hide operator settings in us_experiment as operator(s) are now set up in the eSigner together with reviewer(s)...
Commit: 982611577aa3eb9554630d9566c1eee946bb6043
https://github.com/ehb54/ultrascan3/commit/982611577aa3eb9554630d9566c1eee946bb6043
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-06-02 (Fri, 02 Jun 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
Log Message:
-----------
GMP | eSigner -- lot's of updates: (1) check eSigning sttaus upon GMP report upload; if partially esigned, or completed, upload .PDF page with e-Signatures from DB for review, together with primary report; (2) eSign && update .PDF with e-Signatures && and upload back to Db; automatically track changed global status of eSigning; (3) lock e-Signing to one operator/reviewer at a time; for now, it's asynchronous signing, but can be ordered of needed;...
Commit: 29a76dde1ab33ad833b621ec41a76aa0c07e013f
https://github.com/ehb54/ultrascan3/commit/29a76dde1ab33ad833b621ec41a76aa0c07e013f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-06-09 (Fri, 09 Jun 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
Log Message:
-----------
US_eSigner -- filter investigators by UL: only UL=>2 can become global reviewers...
Commit: c34432f5a49690cbf818b210c6c814026b2f9f2d
https://github.com/ehb54/ultrascan3/commit/c34432f5a49690cbf818b210c6c814026b2f9f2d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-06-27 (Tue, 27 Jun 2023)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M utils/us_run_protocol.h
Log Message:
-----------
GMP | 1. EXP -- integrated settings for assigned operator(s) && reviewer(s) into 2. Lab/Rotor; part of the protocol's internals but NOT the protocol written to DB; accessible upon GMP run submission & creation eSigs DB record; ONLY for GMP-UltraScan, not R&D...
Commit: c16a72161aff6833cba9dba891bef8ba7adc2a2d
https://github.com/ehb54/ultrascan3/commit/c16a72161aff6833cba9dba891bef8ba7adc2a2d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-06-27 (Tue, 27 Jun 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP | 1. EXP -- create autoflowGMPRecordEsign record at the time of submitting GMP run in 1. EXP (new record scenario from us_esigner)...
Commit: 1c23b6a4df7f25e022b5c89e06fa34bc1398895b
https://github.com/ehb54/ultrascan3/commit/1c23b6a4df7f25e022b5c89e06fa34bc1398895b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-06-28 (Wed, 28 Jun 2023)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP | 1. EXP -- bug fixed: if protocol already saved, do not attempt to re-save, proceed with submission; check if operators & reviewers set upon submission, preclude to submit if not...
Commit: 4b2a0b055f383c5d15d170794739af312382f542
https://github.com/ehb54/ultrascan3/commit/4b2a0b055f383c5d15d170794739af312382f542
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-06-28 (Wed, 28 Jun 2023)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP | 1. EXP -- [small bug fixed for -- ] bug fixed: if protocol already saved, do not attempt to re-save, proceed with submission; check if operators & reviewers set upon submission, preclude to submit if not...
Commit: e090f929758dbd44ba86f0629e2e0a8caec215e4
https://github.com/ehb54/ultrascan3/commit/e090f929758dbd44ba86f0629e2e0a8caec215e4
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-06-28 (Wed, 28 Jun 2023)
Changed paths:
M gui/us_passwd.cpp
M gui/us_passwd.h
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP | 1. EXP -- generalized form asking for comment & master password; can be used anywhere in the framework whenever user interactions must be audited & password required; currently used at the time of GMP run submission; needs testing...
Commit: d230b9b954d6f0af750557fc15362133f93b163c
https://github.com/ehb54/ultrascan3/commit/d230b9b954d6f0af750557fc15362133f93b163c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-06-29 (Thu, 29 Jun 2023)
Changed paths:
M gui/us_passwd.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP | 1. EXP -- [small bug fixed for -- ] generalized form asking for comment & master password; can be used anywhere in the framework whenever user interactions must be audited & password required; currently used at the time of GMP run submission; needs testing...
Commit: 7da63bbba22ec949f62885df0db238de38f2187f
https://github.com/ehb54/ultrascan3/commit/7da63bbba22ec949f62885df0db238de38f2187f
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-06-29 (Thu, 29 Jun 2023)
Changed paths:
M README.md
Log Message:
-----------
Update README.md
Commit: 9b24884c0413b751ce8b334119ad3339ac1e34ec
https://github.com/ehb54/ultrascan3/commit/9b24884c0413b751ce8b334119ad3339ac1e34ec
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-07-03 (Mon, 03 Jul 2023)
Changed paths:
M programs/us_pseudo_absorbance/us_add_refScan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.h
Log Message:
-----------
add methods to compute the absorbance profile by blanking the sample with buffer channel
Commit: a1d3197aeb4634991adf89fc47cd48a473e25a2b
https://github.com/ehb54/ultrascan3/commit/a1d3197aeb4634991adf89fc47cd48a473e25a2b
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-07-04 (Tue, 04 Jul 2023)
Changed paths:
M programs/us_pseudo_absorbance/us_add_refScan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.h
Log Message:
-----------
Merge pull request #70 from samo38/master
add methods to compute the absorbance profile by blanking the sample with buffer channel
Commit: 8bd714f7a34b460eeaafa498d8ea84fd9d61644c
https://github.com/ehb54/ultrascan3/commit/8bd714f7a34b460eeaafa498d8ea84fd9d61644c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-07-04 (Tue, 04 Jul 2023)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP | 1. EXP -- proper logic for distinguishing between R&D and GMP while requiring reviwers prior to submission...
Commit: e48f4816a25b14a21742ee43fb70a428bab1c250
https://github.com/ehb54/ultrascan3/commit/e48f4816a25b14a21742ee43fb70a428bab1c250
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-07-05 (Wed, 05 Jul 2023)
Changed paths:
M gui/us_passwd.cpp
Log Message:
-----------
GMP | 1. EXP -- display password field in the submitter's form hidden...
Commit: e36ee892b6bd567cc967eec0a72d22a3c0c00d8f
https://github.com/ehb54/ultrascan3/commit/e36ee892b6bd567cc967eec0a72d22a3c0c00d8f
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-07-10 (Mon, 10 Jul 2023)
Changed paths:
M us_somo/develop/src/us_hydrodyn_save.cpp
Log Message:
-----------
Update us_hydrodyn_save.cpp
Spelling fix. https://github.com/ehb54/ultrascan-tickets/issues/188
Commit: 16d90afd440036193a8295707a0f110dbf3a2a97
https://github.com/ehb54/ultrascan3/commit/16d90afd440036193a8295707a0f110dbf3a2a97
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-07-24 (Mon, 24 Jul 2023)
Changed paths:
M gui/us_passwd.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP | 1. EXP -- keep track on who created GMP run by clicking 'Submit' in 1. EXP. stage...
Commit: 72d66ea16439c8d7de04d134819b6c784fe50860
https://github.com/ehb54/ultrascan3/commit/72d66ea16439c8d7de04d134819b6c784fe50860
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-07-24 (Mon, 24 Jul 2023)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP | 1. EXP -- started to work on modified GUI for e-Signs autoflow stage; show current state of e-sign per reviwer basis...
Commit: 7e552222da8541c8711234cbf7289927c680c5c1
https://github.com/ehb54/ultrascan3/commit/7e552222da8541c8711234cbf7289927c680c5c1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-07-25 (Tue, 25 Jul 2023)
Changed paths:
M gui/us_report_gui.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
Log Message:
-----------
GMP | e-Signatures -- main functionalities of the alternate us_signatures constructor for use in the autoflow framework completed...
Commit: 3e98132e70bf31d6714e924edf0ca924a4534aec
https://github.com/ehb54/ultrascan3/commit/3e98132e70bf31d6714e924edf0ca924a4534aec
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-07-26 (Wed, 26 Jul 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
Log Message:
-----------
GMP | e-Signatures -- easier GUI generation for [in order] operator(s), reviwers, approver(s) in a new e-Sigs constructor...
Commit: 6288fe510588ec32a065bc789916f52819c73f27
https://github.com/ehb54/ultrascan3/commit/6288fe510588ec32a065bc789916f52819c73f27
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-07-26 (Wed, 26 Jul 2023)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP | e-Signatures -- Switch from 6. REPORT to e-Signatures stage | re-attachment directly form GMP Run Manager; needs testing; some logic questions/losse ends remain - TO DISCUSS...
Commit: 6dbc67d3fba6ef9d0fd13919b03ca62de5e522d1
https://github.com/ehb54/ultrascan3/commit/6dbc67d3fba6ef9d0fd13919b03ca62de5e522d1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-07-26 (Wed, 26 Jul 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
Log Message:
-----------
GMP | eSigns -- forgot to remove test case hard coded in the alternate us_esigs constr. for autolfow framework...
Commit: 773b6ec12990b09b1c0ab0ab514071a8d148dea7
https://github.com/ehb54/ultrascan3/commit/773b6ec12990b09b1c0ab0ab514071a8d148dea7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-07-26 (Wed, 26 Jul 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
Log Message:
-----------
GMP | test commit from diff. machine
Commit: badb287acdf0b68d6ebb0a383c37e7d04d0d2462
https://github.com/ehb54/ultrascan3/commit/badb287acdf0b68d6ebb0a383c37e7d04d0d2462
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-07-27 (Thu, 27 Jul 2023)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M utils/us_run_protocol.h
Log Message:
-----------
GMP | 1. EXP. | eSigns -- update for autolfow framework && standalone eSigner for inclusion of 'Approver' type into the consideration...
Commit: 625e437d48aa1a119fb335d06207d9bd4e61502e
https://github.com/ehb54/ultrascan3/commit/625e437d48aa1a119fb335d06207d9bd4e61502e
Author: ehb54 <brookes at uthscsa.edu>
Date: 2023-07-30 (Sun, 30 Jul 2023)
Changed paths:
M us_somo/develop/include/us_hydrodyn_addresidue.h
M us_somo/develop/src/us_hydrodyn_addresidue.cpp
M us_somo/etc/somo.atom.new
M us_somo/etc/somo.hybrid.new
M us_somo/etc/somo.residue.new
Log Message:
-----------
updated somo.residue; updates to residue editor
Commit: f39acb67b0e54feb01031bdb55536e899f98ed05
https://github.com/ehb54/ultrascan3/commit/f39acb67b0e54feb01031bdb55536e899f98ed05
Author: ehb54 <brookes at uthscsa.edu>
Date: 2023-07-30 (Sun, 30 Jul 2023)
Changed paths:
M us_somo/develop/src/us_hydrodyn_load.cpp
Log Message:
-----------
src/us_hydrodyn_load.cpp - drop & warn on empty PDB MODEL section
Commit: cd7efc7854dfa9452c28b50f1007a31a5587b6ce
https://github.com/ehb54/ultrascan3/commit/cd7efc7854dfa9452c28b50f1007a31a5587b6ce
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-07-30 (Sun, 30 Jul 2023)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP | 1. EXP. | eSigns -- some bugs fixed for the first time GMP run record written...
Commit: 8a250037c8ddcf1c7d4659dc4496d2faca331d6d
https://github.com/ehb54/ultrascan3/commit/8a250037c8ddcf1c7d4659dc4496d2faca331d6d
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-07-30 (Sun, 30 Jul 2023)
Changed paths:
M us_somo/develop/include/us_hydrodyn_addresidue.h
M us_somo/develop/src/us_hydrodyn_addresidue.cpp
M us_somo/develop/src/us_hydrodyn_load.cpp
M us_somo/etc/somo.atom.new
M us_somo/etc/somo.hybrid.new
M us_somo/etc/somo.residue.new
Log Message:
-----------
Merge pull request #71 from ehb54/somo_fixes_20230730
updated somo.residue; updates to residue editor
Commit: 70abe44bd4c346a26af313ece24620b0d8927bd0
https://github.com/ehb54/ultrascan3/commit/70abe44bd4c346a26af313ece24620b0d8927bd0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-07-31 (Mon, 31 Jul 2023)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
M programs/us_esigner_gmp/us_esigner_gmp_main.cpp
A programs/us_esigner_gmp_aux/us_esigner_gmp.pro
A programs/us_esigner_gmp_aux/us_esigner_gmp_main.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | eSigns -- desicion made on e-Signing process would be decoupled from autoflow framework, for ease of controlling GMP runs with assigned reviwers vs. logged in users; old (aux.) features retained in a new separate program 'us_esigner_aux'; remove eSignature tab from us_Comproject...
Commit: db0fab2232a622c7e5e23104c0e9a4812d95b397
https://github.com/ehb54/ultrascan3/commit/db0fab2232a622c7e5e23104c0e9a4812d95b397
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-07-31 (Mon, 31 Jul 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
Log Message:
-----------
GMP | eSigns -- enforce ordered e-signing, as defined in to_sign json key...
Commit: 39107dc9f302400aa1e462189f01f45e40d9037d
https://github.com/ehb54/ultrascan3/commit/39107dc9f302400aa1e462189f01f45e40d9037d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-08-01 (Tue, 01 Aug 2023)
Changed paths:
M gui/us_passwd.cpp
M gui/us_passwd.h
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP | eSigns -- slight GUI changes; enforce for checking master passw. & comment prior to e-Signing...
Commit: 729a447245734bb0bb05a4d857920db8504c5ca0
https://github.com/ehb54/ultrascan3/commit/729a447245734bb0bb05a4d857920db8504c5ca0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-08-01 (Tue, 01 Aug 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP | REPORT -- new way of generating .PDF for GMP report ('painting') to enable custom page pagination: footers to be passed by e-Signers...
Commit: 99b55bc56fde90edeb6bcc575deb1613e42839b0
https://github.com/ehb54/ultrascan3/commit/99b55bc56fde90edeb6bcc575deb1613e42839b0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-08-02 (Wed, 02 Aug 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | REPORT -- page pagination: fixed issue with scaling images (according to painter/printer settings); more control on footer - appearence will depend on the number of reviewers...
Commit: 8dc70cc9340e2295696e0839c8d753aae47ef231
https://github.com/ehb54/ultrascan3/commit/8dc70cc9340e2295696e0839c8d753aae47ef231
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-08-02 (Wed, 02 Aug 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | REPORT && eSign -- finally came up with a solution for appending e-Sigs from different reviewers into the GMP footer on each page && re-uploading of updated GMP Report into DB without lengthy re-processing ...
Commit: 38d660bbad7833a6204e4e6170e9871242d77648
https://github.com/ehb54/ultrascan3/commit/38d660bbad7833a6204e4e6170e9871242d77648
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-08-04 (Fri, 04 Aug 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | REPORT && eSign -- testing, many bugs fixed ...
Commit: afc802a6da8beb76eb514a0ae262368bbff76948
https://github.com/ehb54/ultrascan3/commit/afc802a6da8beb76eb514a0ae262368bbff76948
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-08-07 (Mon, 07 Aug 2023)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP | 1.EXP -- bug fixed...
Commit: ba6c33cdc1cb17dfd26d44fdb8bc1e36b7fc0b27
https://github.com/ehb54/ultrascan3/commit/ba6c33cdc1cb17dfd26d44fdb8bc1e36b7fc0b27
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-08-08 (Tue, 08 Aug 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
Log Message:
-----------
GMP | eSign -- move eSign record to history when signed completely...
Commit: 38dbb3df0ca6652c2048ff1fbd7c8df9b47df2bc
https://github.com/ehb54/ultrascan3/commit/38dbb3df0ca6652c2048ff1fbd7c8df9b47df2bc
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-08-08 (Tue, 08 Aug 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
Log Message:
-----------
GMP | eSign -- properly merge & print .PDFs for primary GMP Report && eSigs page; the latter is updated every time eSignature added, together with the header on each page of the combined PDF...
Commit: 05685dfeb80cc60cfb367e4c54a895e826a068c4
https://github.com/ehb54/ultrascan3/commit/05685dfeb80cc60cfb367e4c54a895e826a068c4
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-08-10 (Thu, 10 Aug 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M utils/us_run_protocol.h
Log Message:
-----------
GMP | 1. EXP. | eSign -- add SME person(s) into the framework for e-Signing...
Commit: 551728061ee9819b910c3ed797c2fa50a4dc5ece
https://github.com/ehb54/ultrascan3/commit/551728061ee9819b910c3ed797c2fa50a4dc5ece
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-08-10 (Thu, 10 Aug 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
Log Message:
-----------
GMP | eSign -- portrait orientation...
Commit: b5e367d7cc07bffa57a30166ce176855ec64d2a0
https://github.com/ehb54/ultrascan3/commit/b5e367d7cc07bffa57a30166ce176855ec64d2a0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-08-12 (Sat, 12 Aug 2023)
Changed paths:
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
GMP | 2. LIVE_UPDATE -- enforce entering master passw. & comment when stopping machine | skipping stage ...
Commit: 5f83df4c9e00a8d71855495169b2f08a5e4a17dc
https://github.com/ehb54/ultrascan3/commit/5f83df4c9e00a8d71855495169b2f08a5e4a17dc
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-08-12 (Sat, 12 Aug 2023)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
Log Message:
-----------
GMP | 3. IMPORT -- enforce entering master passw. & comment when saving data to LIMS; re-arranged checks on if data for certain optics was saved, or if program proceeded to the next stage; needs testing ...
Commit: 4ed8dcdd373ad3e66e51119e5cc1bec8b61c44a5
https://github.com/ehb54/ultrascan3/commit/4ed8dcdd373ad3e66e51119e5cc1bec8b61c44a5
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-08-12 (Sat, 12 Aug 2023)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
GMP | 3. IMPORT -- [added comment on SAVING to User Interaction section] enforce entering master passw. & comment when saving data to LIMS; re-arranged checks on if data for certain optics was saved, or if program proceeded to the next stage; needs testing ...
Commit: 5f30a194cec051d3f9db4d02bd4c0cee07bcdd6b
https://github.com/ehb54/ultrascan3/commit/5f30a194cec051d3f9db4d02bd4c0cee07bcdd6b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-08-15 (Tue, 15 Aug 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
Log Message:
-----------
Test commit from new machine
Commit: d51d7baaa2d11574414335e8fe875cdb6ad33f71
https://github.com/ehb54/ultrascan3/commit/d51d7baaa2d11574414335e8fe875cdb6ad33f71
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-08-16 (Wed, 16 Aug 2023)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
Log Message:
-----------
GMP: 3. IMPORT | 4. EDIT -- enforce submitter form when saving edit profiles; some bugs fixed for the same in 3. IMPORT...
Commit: 06560e58600c29a07704d15e8705806abc98f8f3
https://github.com/ehb54/ultrascan3/commit/06560e58600c29a07704d15e8705806abc98f8f3
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-08-17 (Thu, 17 Aug 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
Log Message:
-----------
GMP: e-Sign -- a bug fixed related to incorrect order of printing eSigs in the footers of the GMP report...
Commit: 1cb63b3c4bdf1721b3c46798259f32b34d0fe8e8
https://github.com/ehb54/ultrascan3/commit/1cb63b3c4bdf1721b3c46798259f32b34d0fe8e8
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-08-17 (Thu, 17 Aug 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP: e-Sign -- test...
Commit: 9868d5d127f6094b7523a51228dc3bc52f3bc9c0
https://github.com/ehb54/ultrascan3/commit/9868d5d127f6094b7523a51228dc3bc52f3bc9c0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-08-17 (Thu, 17 Aug 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP: e-Sign -- test 2...
Commit: e101a130516e4699ed85e699721b192c3ebbf1d7
https://github.com/ehb54/ultrascan3/commit/e101a130516e4699ed85e699721b192c3ebbf1d7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-08-17 (Thu, 17 Aug 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP: REPORT | e-Sign -- scale down footer's font based on painter's size to accomodate up to 4-5 lines for different reviewers...
Commit: 9b130669d8754bc7ea759bcb092a067b913d5eb5
https://github.com/ehb54/ultrascan3/commit/9b130669d8754bc7ea759bcb092a067b913d5eb5
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-08-18 (Fri, 18 Aug 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
Log Message:
-----------
GMP: e-Sign -- bug fixed...
Commit: 1f54e50034d3a491f8bc5cf7ec7cbc5d6f6facbb
https://github.com/ehb54/ultrascan3/commit/1f54e50034d3a491f8bc5cf7ec7cbc5d6f6facbb
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-08-25 (Fri, 25 Aug 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP: 6. REPORT | Custom REPORT -- Operator is now (correclty) read from GMP Esign record and displayed in the GMP Report; also shown are reviewer(s) & approver(s); semicolon separated if more than one... Also, default footer is indicative of wether it's a custom Report, or Report generated within autolfow framework..
Commit: 5c1748f60bf3c3be139b535ea8c3157c3fe0e4d5
https://github.com/ehb54/ultrascan3/commit/5c1748f60bf3c3be139b535ea8c3157c3fe0e4d5
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-08-26 (Sat, 26 Aug 2023)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
Log Message:
-----------
GMP: 1. EXP -- possible fix for emrty SME in setting exp..
Commit: 7dd866630b72277a9265531643065b4192e07f5a
https://github.com/ehb54/ultrascan3/commit/7dd866630b72277a9265531643065b4192e07f5a
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-08-27 (Sun, 27 Aug 2023)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
5. ANALYSIS -- yet another attemot to address race conditions caused by FAILED status of one of the sub-stages; very close to earlier addressed similar issue...
Commit: 7dc0f0ef40b0ebf5383cf9cfdf24a925d72f0adf
https://github.com/ehb54/ultrascan3/commit/7dc0f0ef40b0ebf5383cf9cfdf24a925d72f0adf
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-09-01 (Fri, 01 Sep 2023)
Changed paths:
M gui/us_plot.cpp
M gui/us_plot.h
Log Message:
-----------
add method to autoscale the right axis when to zoom in to the plot
Commit: 24156d73acbde4468b9ce2677865f2285831ed7b
https://github.com/ehb54/ultrascan3/commit/24156d73acbde4468b9ce2677865f2285831ed7b
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-09-01 (Fri, 01 Sep 2023)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
Log Message:
-----------
correct scaling the y axis
Commit: bb944661818850983bbec0933e5bd2fa232612b5
https://github.com/ehb54/ultrascan3/commit/bb944661818850983bbec0933e5bd2fa232612b5
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-09-02 (Sat, 02 Sep 2023)
Changed paths:
M gui/us_plot.cpp
M gui/us_plot.h
M programs/us_abde/us_norm_profile.cpp
Log Message:
-----------
Merge pull request #73 from samo38/master
autoscale the right axis when you zoom in
Commit: bbf05b338bb911297482c7f6d8e61689fed90c12
https://github.com/ehb54/ultrascan3/commit/bbf05b338bb911297482c7f6d8e61689fed90c12
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-09-05 (Tue, 05 Sep 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
comments enforced during data saving (IMPORT | EDIT), to the 'User Intaractions' section of the report; minor change on appearence of the cancelled jobs (if any)...
Commit: ac66d33e1a258c5667d1a9e4a9259e4bdb2cf44b
https://github.com/ehb54/ultrascan3/commit/ac66d33e1a258c5667d1a9e4a9259e4bdb2cf44b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-09-06 (Wed, 06 Sep 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP | 6. REPORTING -- add to User Interactions also information on GMP run initiation (who, when, comment) ...
Commit: 7b8c6efb5c9bba9ffc99b3b5149f6da1d4c79247
https://github.com/ehb54/ultrascan3/commit/7b8c6efb5c9bba9ffc99b3b5149f6da1d4c79247
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-09-09 (Sat, 09 Sep 2023)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
GMP | 4. EDIT -- hard-coded value of 5.87 for the beginnig of the meniscus position search...
Commit: d3351ae4a698aac118740c9ec2457e72ba7976dc
https://github.com/ehb54/ultrascan3/commit/d3351ae4a698aac118740c9ec2457e72ba7976dc
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-09-11 (Mon, 11 Sep 2023)
Changed paths:
M programs/us/us.cpp
M programs/us/us_win_data.cpp
Log Message:
-----------
Add GMP menu
Commit: ff7a96f37f82e831a22dabd4472464b4a71815bf
https://github.com/ehb54/ultrascan3/commit/ff7a96f37f82e831a22dabd4472464b4a71815bf
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-09-11 (Mon, 11 Sep 2023)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: 64ea77d02d2d09957f2a667fe3ec59ca033f1870
https://github.com/ehb54/ultrascan3/commit/64ea77d02d2d09957f2a667fe3ec59ca033f1870
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-09-12 (Tue, 12 Sep 2023)
Changed paths:
M programs/us/us.cpp
M programs/us/us_win_data.cpp
Log Message:
-----------
Merge pull request #74 from samo38/master
GMP menu
Commit: 3f8606534968fcd845dd6973e41b66eca26a9f01
https://github.com/ehb54/ultrascan3/commit/3f8606534968fcd845dd6973e41b66eca26a9f01
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-09-13 (Wed, 13 Sep 2023)
Changed paths:
A programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
A programs/us_audit_trail_gmp/us_audit_trail_gmp.h
A programs/us_audit_trail_gmp/us_audit_trail_gmp.pro
A programs/us_audit_trail_gmp/us_audit_trail_gmp_main.cpp
Log Message:
-----------
GMP | Audit Trail program -- first version for demo...
Commit: 8a3bd75d4ee9e3c28b7a37446f44bfd9cf777899
https://github.com/ehb54/ultrascan3/commit/8a3bd75d4ee9e3c28b7a37446f44bfd9cf777899
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-09-13 (Wed, 13 Sep 2023)
Changed paths:
M programs/us/us_win_data.cpp
Log Message:
-----------
US GMP entry | Audit Trail program -- added program for Audit Trail Entry in the main menu...
Commit: 91480e7867b446d280c473302cde2c37999712d1
https://github.com/ehb54/ultrascan3/commit/91480e7867b446d280c473302cde2c37999712d1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-09-14 (Thu, 14 Sep 2023)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.h
Log Message:
-----------
GMP | Audit Trail program | 3. IMPORT -- GUI for User interactions at 3. Lims IMPORT stage; per optic sys. type; items: {Who, When, Comment, if [triple|channel] dropped}, comment for dropped triples...
Commit: db995941d118ed73de99049144621ec4a4e5cafa
https://github.com/ehb54/ultrascan3/commit/db995941d118ed73de99049144621ec4a4e5cafa
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-09-15 (Fri, 15 Sep 2023)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
Log Message:
-----------
GMP | Audit Trail program | 2. LIVE_UPDATE, 4. EDIT -- GUI for User interactions...
Commit: f03d5bd2beb1933f336872ffed9f2e409355efc8
https://github.com/ehb54/ultrascan3/commit/f03d5bd2beb1933f336872ffed9f2e409355efc8
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-09-15 (Fri, 15 Sep 2023)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.h
Log Message:
-----------
GMP | Audit Trail program | 5. ANALYSIS -- GUI for User interactions; if meniscus pos. determined manually, per triple basis; if job(s) have been cancelled, provide informaiton: when, by whom, reason, triple...
Commit: ddbafa1e27e003de3dd10b11173360ceae9d1330
https://github.com/ehb54/ultrascan3/commit/ddbafa1e27e003de3dd10b11173360ceae9d1330
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-09-16 (Sat, 16 Sep 2023)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
Log Message:
-----------
GMP | Audit Trail program -- GUI improvements: better placing in groupboxes, no 'cut' fields (esp. comments), no empty fields (in case no DB entry, or legacy data)...
Commit: efcba61792873dd0428007292743f4fdde4f1fcb
https://github.com/ehb54/ultrascan3/commit/efcba61792873dd0428007292743f4fdde4f1fcb
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-09-20 (Wed, 20 Sep 2023)
Changed paths:
M programs/us/us.cpp
M programs/us/us_win_data.cpp
Log Message:
-----------
US | GMP Menu -- moved GMP Reporter and Viewer to GMP menu...
Commit: 55b1f7bd49efc0869d085328457f0dc1b73aa047
https://github.com/ehb54/ultrascan3/commit/55b1f7bd49efc0869d085328457f0dc1b73aa047
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-09-20 (Wed, 20 Sep 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP Reporter -- items sorted by UTC date in both (1) load GMP Run, and (2) load GMP Report form DB...
Commit: b3103ad04d486b8158ec9bb61204d3530f1b6fa9
https://github.com/ehb54/ultrascan3/commit/b3103ad04d486b8158ec9bb61204d3530f1b6fa9
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-09-21 (Thu, 21 Sep 2023)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP, R&D | 1. EXP -- do not trigger informational dialog every time focus is lost from the protocol name field (e.g. either to copy protocol name, or change the protocol name, or anything esle ); does not seem to be needed; a requirement of changing the name if protocol modified is still enforced at the end; tested; also, small fix for the timedate stamp appearence for the newly saved protocol in the protocol list...
Commit: e0ecef3138d387dc7054f02649698dcf0cfdee54
https://github.com/ehb54/ultrascan3/commit/e0ecef3138d387dc7054f02649698dcf0cfdee54
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-09-21 (Thu, 21 Sep 2023)
Changed paths:
A programs/us_assign_reviewers_gmp/us_assign_reviewers_gmp.pro
A programs/us_assign_reviewers_gmp/us_assign_reviewers_gmp_main.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
Log Message:
-----------
GMP: new stand-alone program to assign/edit global lists of reviewers & approvers out of all investigators...
Commit: e96c2475359c553d0b5c3f04a2580eec605752d1
https://github.com/ehb54/ultrascan3/commit/e96c2475359c553d0b5c3f04a2580eec605752d1
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-09-23 (Sat, 23 Sep 2023)
Changed paths:
M programs/us_convert/us_experiment.h
Log Message:
-----------
add new continer to take reference raidial point intensity for all triples, all scans
Commit: 8a66f16619a9c2be2da52ecb46bdaae01a995a33
https://github.com/ehb54/ultrascan3/commit/8a66f16619a9c2be2da52ecb46bdaae01a995a33
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-09-24 (Sun, 24 Sep 2023)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
Log Message:
-----------
GMP: audit_trail -- a bug fixed related to showing and enabling to upload all audit trail records, incl. from history...
Commit: 6385563c4d3d2c03c23483f06c97fcecef3b97a4
https://github.com/ehb54/ultrascan3/commit/6385563c4d3d2c03c23483f06c97fcecef3b97a4
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-09-24 (Sun, 24 Sep 2023)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
Log Message:
-----------
GMP: audit_trail, e-Signer -- also, sort records in the intial dialog by UTC date of creation, like in GMP Report...
Commit: c1ee12e80046184e023933c9a3d7a9bb0e440c9b
https://github.com/ehb54/ultrascan3/commit/c1ee12e80046184e023933c9a3d7a9bb0e440c9b
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-09-24 (Sun, 24 Sep 2023)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
Log Message:
-----------
calculate pseudo-absorbance triple by triple, add method to plot the last scan of the first lambda of each channel for better selecting the reference profile
Commit: 115a0cf80346aa9ae4151e32d8b4a717f9398fb7
https://github.com/ehb54/ultrascan3/commit/115a0cf80346aa9ae4151e32d8b4a717f9398fb7
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-09-24 (Sun, 24 Sep 2023)
Changed paths:
M programs/us/us.cpp
M programs/us/us_win_data.cpp
A programs/us_assign_reviewers_gmp/us_assign_reviewers_gmp.pro
A programs/us_assign_reviewers_gmp/us_assign_reviewers_gmp_main.cpp
A programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
A programs/us_audit_trail_gmp/us_audit_trail_gmp.h
A programs/us_audit_trail_gmp/us_audit_trail_gmp.pro
A programs/us_audit_trail_gmp/us_audit_trail_gmp_main.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: e076e437622cdd75a309bd379248ea55ca8ef7d2
https://github.com/ehb54/ultrascan3/commit/e076e437622cdd75a309bd379248ea55ca8ef7d2
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-09-25 (Mon, 25 Sep 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
Log Message:
-----------
GMP: audit_trail, e-Signer -- stricter control on mutual exclusivness of gmp reviewer vs. approver roles...
Commit: 926dbf55c908f346af5e7ef7280215a4e09ca141
https://github.com/ehb54/ultrascan3/commit/926dbf55c908f346af5e7ef7280215a4e09ca141
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-09-25 (Mon, 25 Sep 2023)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
Log Message:
-----------
GMP: audit_trail -- when no remote operations (STOP, SKIP stage), provide explicit message in the audit trail...
Commit: 0239da0cf3407efd6167e03c5bdac37b5e8086b6
https://github.com/ehb54/ultrascan3/commit/0239da0cf3407efd6167e03c5bdac37b5e8086b6
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-09-25 (Mon, 25 Sep 2023)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_convert/us_experiment.h
Log Message:
-----------
Merge pull request #75 from samo38/master
New intensity to absorbance procedure in us_convert
Commit: 39845160bbe25ad88cb5f38f68feb5687a868436
https://github.com/ehb54/ultrascan3/commit/39845160bbe25ad88cb5f38f68feb5687a868436
Author: gegorbet <gegorbet at gmail.com>
Date: 2023-09-27 (Wed, 27 Sep 2023)
Changed paths:
M README.md
M gui/us_analyte_gui.cpp
M gui/us_buffer_gui.cpp
M gui/us_extinction_gui.cpp
M gui/us_new_spectrum.cpp
M gui/us_new_spectrum.h
M gui/us_passwd.cpp
M gui/us_passwd.h
M gui/us_plot.cpp
M gui/us_plot.h
M gui/us_report_gui.cpp
M gui/us_solution_gui.cpp
M programs/us/us.cpp
M programs/us/us_win_data.cpp
M programs/us_abde/us_norm_profile.cpp
A programs/us_assign_reviewers_gmp/us_assign_reviewers_gmp.pro
A programs/us_assign_reviewers_gmp/us_assign_reviewers_gmp_main.cpp
A programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
A programs/us_audit_trail_gmp/us_audit_trail_gmp.h
A programs/us_audit_trail_gmp/us_audit_trail_gmp.pro
A programs/us_audit_trail_gmp/us_audit_trail_gmp_main.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.h
M programs/us_com_project/us_com_project.pro
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_com_project_academic/us_com_project_academic.pro
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_convert/us_experiment.h
M programs/us_convert/us_get_run.cpp
M programs/us_convert/us_get_run.h
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
A programs/us_esigner_gmp/us_esigner_gmp.cpp
A programs/us_esigner_gmp/us_esigner_gmp.h
A programs/us_esigner_gmp/us_esigner_gmp.pro
A programs/us_esigner_gmp/us_esigner_gmp_main.cpp
A programs/us_esigner_gmp_aux/us_esigner_gmp.pro
A programs/us_esigner_gmp_aux/us_esigner_gmp_main.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment.pro
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_protocol_dev/us_protocol_dev.pro
M programs/us_protocol_dev/us_protocol_dev_gui.h
M programs/us_pseudo_absorbance/us_add_refScan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.h
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_query_rmsd/us_query_rmsd.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M us_somo/develop/include/us_hydrodyn_addresidue.h
M us_somo/develop/src/us_hydrodyn_addresidue.cpp
M us_somo/develop/src/us_hydrodyn_load.cpp
M us_somo/develop/src/us_hydrodyn_save.cpp
M us_somo/etc/somo.atom.new
M us_somo/etc/somo.hybrid.new
M us_somo/etc/somo.residue.new
M utils/us_run_protocol.h
Log Message:
-----------
Merge branch 'master' of github.com:ehb54/ultrascan3
Commit: fb60aee5470e1bd286ee0926155c361608ddfbb2
https://github.com/ehb54/ultrascan3/commit/fb60aee5470e1bd286ee0926155c361608ddfbb2
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-09-30 (Sat, 30 Sep 2023)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
Log Message:
-----------
GMP | 3. IMPORT -- incorporated ref. scans determination for MWL treatment; remapped RIProfile on the wavelength-to-av.intensity basis (too much info for the GMP report when on per-scan basis); vertical line displayed first time as a best guess for air region (5.87cm); tested for the current 'eGFP-DNA-MW-AUG2223-run1961' MWL data, but further DA/GMP tests are needed for combined optics systems to assure RI type is still procesesed correctly...
Commit: 2da80429a12042738ecde7c16ebfd797eaa3f761
https://github.com/ehb54/ultrascan3/commit/2da80429a12042738ecde7c16ebfd797eaa3f761
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-10-06 (Fri, 06 Oct 2023)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
Log Message:
-----------
first check which wavelength does not exist in the selected channel by user, then prepare list of reference triples for calculating the I_0 and pseudo-absorbance
Commit: 2f17cafefdb658a4b6987fed9c3a1584620ada6c
https://github.com/ehb54/ultrascan3/commit/2f17cafefdb658a4b6987fed9c3a1584620ada6c
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-10-07 (Sat, 07 Oct 2023)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
Log Message:
-----------
Merge pull request #77 from samo38/master
us_convert pseudo-absorbance correction
Commit: d4aa956c40258b661f8603805501a2b6f8f4fb02
https://github.com/ehb54/ultrascan3/commit/d4aa956c40258b661f8603805501a2b6f8f4fb02
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-10-06 (Fri, 06 Oct 2023)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
Log Message:
-----------
GMP | 3. IMPORT -- reverted to the old way of dealing with ref. scan automatiacally, also old way of reporting intensities in GMP report; removed version number in the main us_comproject program...
Commit: a45c76d994cb35c78546967120c43528521c384e
https://github.com/ehb54/ultrascan3/commit/a45c76d994cb35c78546967120c43528521c384e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-10-06 (Fri, 06 Oct 2023)
Changed paths:
Log Message:
-----------
Merge branch 'master' of github.com:ehb54/ultrascan3
Commit: 162f5eb1b06647a85613567f3451637465202f7e
https://github.com/ehb54/ultrascan3/commit/162f5eb1b06647a85613567f3451637465202f7e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-10-14 (Sat, 14 Oct 2023)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
GMP | 4. EDIT -- bug fixed...
Commit: 30f5b5a3487cf89def84aa04ed940cc82fd56240
https://github.com/ehb54/ultrascan3/commit/30f5b5a3487cf89def84aa04ed940cc82fd56240
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-10-14 (Sat, 14 Oct 2023)
Changed paths:
Log Message:
-----------
Merge branch 'master' of github.com:ehb54/ultrascan3
Commit: 32182197640f288c55cbe497c86e76f0c56f4feb
https://github.com/ehb54/ultrascan3/commit/32182197640f288c55cbe497c86e76f0c56f4feb
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-10-16 (Mon, 16 Oct 2023)
Changed paths:
M gui/us_tmst_plot.cpp
M gui/us_tmst_plot.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | 6. REPORTING -- shows Temp. plot in Run Details and temperature std-dev....
Commit: ff5e33df1c5991fabec4bfac1a7004d5b631ac81
https://github.com/ehb54/ultrascan3/commit/ff5e33df1c5991fabec4bfac1a7004d5b631ac81
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-10-16 (Mon, 16 Oct 2023)
Changed paths:
Log Message:
-----------
Merge branch 'master' of github.com:ehb54/ultrascan3
Commit: 7b8fcb2f4f4907d99f484d3fddeb8d36c143da32
https://github.com/ehb54/ultrascan3/commit/7b8fcb2f4f4907d99f484d3fddeb8d36c143da32
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-10-16 (Mon, 16 Oct 2023)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
R&D| 3. IMPORT -- do not request explanation for triples dropped...
Commit: c78838720bbb028d2990e05de246ef7baa926fee
https://github.com/ehb54/ultrascan3/commit/c78838720bbb028d2990e05de246ef7baa926fee
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-10-16 (Mon, 16 Oct 2023)
Changed paths:
Log Message:
-----------
Merge branch 'master' of github.com:ehb54/ultrascan3
Commit: b9ec4932dc5b54cf73593bdb7fe8f6e8f7364069
https://github.com/ehb54/ultrascan3/commit/b9ec4932dc5b54cf73593bdb7fe8f6e8f7364069
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-10-17 (Tue, 17 Oct 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | 6. REPORT | US_reporter_gmp -- add US verison/revision to the header of the report...
Commit: 00a6dfd93eb2ba58e5a9985cd62322238a943fff
https://github.com/ehb54/ultrascan3/commit/00a6dfd93eb2ba58e5a9985cd62322238a943fff
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-10-17 (Tue, 17 Oct 2023)
Changed paths:
Log Message:
-----------
Merge branch 'master' of github.com:ehb54/ultrascan3
Commit: d478bc1f1d20be4e8d6895f63d58aee2a459f780
https://github.com/ehb54/ultrascan3/commit/d478bc1f1d20be4e8d6895f63d58aee2a459f780
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-10-18 (Wed, 18 Oct 2023)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
Log Message:
-----------
GMP | US_Protocol_Dev.-- sort run lists by UCT datetime; shwo only gmp runs in prot. dev. program...
Commit: b6528661b9c17da7094e60f574e6d8592b1ac5e6
https://github.com/ehb54/ultrascan3/commit/b6528661b9c17da7094e60f574e6d8592b1ac5e6
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-10-19 (Thu, 19 Oct 2023)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
Log Message:
-----------
US Assigner GMP Revs/Appr.-- bugs fixed...
Commit: 52e702d4681d0455dc9e35595bfd80c41ec48142
https://github.com/ehb54/ultrascan3/commit/52e702d4681d0455dc9e35595bfd80c41ec48142
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-10-20 (Fri, 20 Oct 2023)
Changed paths:
M gui/us_select_item.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
US_Protocol Dev. -- first version for incoprorating reviewing & e-Sigs business into Protocol development progrma; currently being tested on one of the cpmpleted GMP runs...
Commit: db4382e10884a58ce155fd5ece482952fdfe7fb2
https://github.com/ehb54/ultrascan3/commit/db4382e10884a58ce155fd5ece482952fdfe7fb2
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-10-20 (Fri, 20 Oct 2023)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP | 1. EXP. | 6. REPORT -- upon rin submission, leave eSighJson empty; upon report generation, compose 'to_sign:[]' portion out of assigned operators, revs, & appr && update e-sign record to trigger e-mail sending...
Commit: aa5a23bf9b078ec94227410d4f4fb61c1dc4a712
https://github.com/ehb54/ultrascan3/commit/aa5a23bf9b078ec94227410d4f4fb61c1dc4a712
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-10-20 (Fri, 20 Oct 2023)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_edit/us_edit.cpp
Log Message:
-----------
GMP | 4. EDIT | 5. ANALYSIS -- some debug stats...
Commit: 81960c47c8203f0cbb422ebd686a12ccb2036bfc
https://github.com/ehb54/ultrascan3/commit/81960c47c8203f0cbb422ebd686a12ccb2036bfc
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-10-21 (Sat, 21 Oct 2023)
Changed paths:
M gui/us_select_item.cpp
Log Message:
-----------
GMP | R&D -- When marking non-GMP run as failed, omit dialog asking for reason & stage; however, record with the reason 'non-GMP' is still created (required by framework)...
Commit: 24c842aa08f5df4c3e8326ec9bf2bbda8693b5aa
https://github.com/ehb54/ultrascan3/commit/24c842aa08f5df4c3e8326ec9bf2bbda8693b5aa
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-10-23 (Mon, 23 Oct 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
Update us_reporter_gmp.cpp
Commit: 5f7639fb6e52fc0b6b553183229a7ca66f69338e
https://github.com/ehb54/ultrascan3/commit/5f7639fb6e52fc0b6b553183229a7ca66f69338e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-10-23 (Mon, 23 Oct 2023)
Changed paths:
M programs/us_config/us_newxpnhost_db.cpp
M programs/us_config/us_xpnhost.cpp
M programs/us_config/us_xpnhost_db.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
US -- addressed ticket #222...
Commit: 7347f84e33922a03ec2076b810328f84abc59965
https://github.com/ehb54/ultrascan3/commit/7347f84e33922a03ec2076b810328f84abc59965
Author: ehb54 <brookes at uthscsa.edu>
Date: 2023-10-23 (Mon, 23 Oct 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
us_reporter_gmp.cpp #include mode for CodeQL
Commit: b1150304f841f4bb2a5d6b7a41d9837d22694b49
https://github.com/ehb54/ultrascan3/commit/b1150304f841f4bb2a5d6b7a41d9837d22694b49
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-10-23 (Mon, 23 Oct 2023)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Update codeql-analysis.yml
Commit: faf05615035b9d785a26b08e530620003eed2327
https://github.com/ehb54/ultrascan3/commit/faf05615035b9d785a26b08e530620003eed2327
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-10-23 (Mon, 23 Oct 2023)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Update codeql-analysis.yml
Commit: 9f05a51a14460d35f98a6f6e186203e46d336c19
https://github.com/ehb54/ultrascan3/commit/9f05a51a14460d35f98a6f6e186203e46d336c19
Author: ehb54 <brookes at uthscsa.edu>
Date: 2023-10-24 (Tue, 24 Oct 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
us_reporter_gmp.cpp : reverted to master copy
Commit: 92e13d777a5c186516f200d27ae5eb050c76498a
https://github.com/ehb54/ultrascan3/commit/92e13d777a5c186516f200d27ae5eb050c76498a
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-10-24 (Tue, 24 Oct 2023)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Merge pull request #78 from ehb54/ehb54-patch-1
Update codeql-analysis.yml to fix issue with missing us/us_revision.h
Commit: 8bbe2d125e7ed6d68d082df089481aacd0cf5eed
https://github.com/ehb54/ultrascan3/commit/8bbe2d125e7ed6d68d082df089481aacd0cf5eed
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-10-24 (Tue, 24 Oct 2023)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_fematch/us_fematch.cpp
Log Message:
-----------
GMP | R&D -- added debug stats...
Commit: 201b356c844c1436f252d819b7862b02a64cfd3b
https://github.com/ehb54/ultrascan3/commit/201b356c844c1436f252d819b7862b02a64cfd3b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-10-24 (Tue, 24 Oct 2023)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
GMP | US_ProtDEV | 4. EDIT -- possible bug fix...
Commit: c20b4f414040b15f3bcaa1b08337c05e2c171b71
https://github.com/ehb54/ultrascan3/commit/c20b4f414040b15f3bcaa1b08337c05e2c171b71
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-10-24 (Tue, 24 Oct 2023)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
Log Message:
-----------
GMP | US_ProtDEV | 4. EDIT -- possible bug fix [2]: when some triples dropped withing MWL channel...
Commit: a642b06a55520dc0640af5563fcbf9d91fb83c49
https://github.com/ehb54/ultrascan3/commit/a642b06a55520dc0640af5563fcbf9d91fb83c49
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-10-24 (Tue, 24 Oct 2023)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
GMP | US_ProtDEV | 4. EDIT -- possible bug fix [3]: when some triples dropped withing MWL channel...
Commit: 676e0c882ce1cecc61d142a6409718efbdfebc4c
https://github.com/ehb54/ultrascan3/commit/676e0c882ce1cecc61d142a6409718efbdfebc4c
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-11-01 (Wed, 01 Nov 2023)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
Log Message:
-----------
Add runId info line edit, add methods to handle both retrieving data from the DB and reading from the local disk
Commit: 9752503376e110a17284424c8eb9aac214a463bc
https://github.com/ehb54/ultrascan3/commit/9752503376e110a17284424c8eb9aac214a463bc
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-11-02 (Thu, 02 Nov 2023)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
Log Message:
-----------
set color of the picker Vline and the tracker
Commit: e8a0bbf92fc1e6a850d7f31ef41027471b08ab07
https://github.com/ehb54/ultrascan3/commit/e8a0bbf92fc1e6a850d7f31ef41027471b08ab07
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-11-02 (Thu, 02 Nov 2023)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
Log Message:
-----------
fixed the issue with maximizing the 3D RMSD plot window
Commit: 8a9c3a5114bb6590071f7d51813a0ce1fc3ff195
https://github.com/ehb54/ultrascan3/commit/8a9c3a5114bb6590071f7d51813a0ce1fc3ff195
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-11-09 (Thu, 09 Nov 2023)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
US_ProtDEV | 1. Exp. | 9. Submit -- pass runName && label directly from completed GMP run && make them read-only...
Commit: 1e02de4d3e0e1af51da79679e1fab820857c26db
https://github.com/ehb54/ultrascan3/commit/1e02de4d3e0e1af51da79679e1fab820857c26db
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-11-09 (Thu, 09 Nov 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | US_ProtDEV | 6. REPORT -- .pdf filename should be based on unique protoocl name rather than run name (esp. for protocol dev. when run name is enforced to be the same to the original one)...
Commit: a86d2520c2673314f57670ffe15678a1e86d0c23
https://github.com/ehb54/ultrascan3/commit/a86d2520c2673314f57670ffe15678a1e86d0c23
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-11-10 (Fri, 10 Nov 2023)
Changed paths:
M gui/us_report_gui.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M utils/us_report_gmp.cpp
M utils/us_report_gmp.h
Log Message:
-----------
GMP | US_ProtDEV | 1.EXP. && 6. REPORT -- headway on setting && inclusion of the individual combined distributions into GMP report; ...
Commit: e561fdc1f8b2c20c003a9bbe7b61bc8f1a2cd852
https://github.com/ehb54/ultrascan3/commit/e561fdc1f8b2c20c003a9bbe7b61bc8f1a2cd852
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-11-11 (Sat, 11 Nov 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP | US_ProtDEV | 1.EXP. && 6. REPORT -- headway on setting && inclusion of the individual combined distributions into GMP report; (2) pass related parms: DB-Internals-tree && back (edited)...
Commit: d5ee3ed7788dd3b300f707f88bc2a7b78a4f042b
https://github.com/ehb54/ultrascan3/commit/d5ee3ed7788dd3b300f707f88bc2a7b78a4f042b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-11-13 (Mon, 13 Nov 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP | US_ProtDEV | 1.EXP. && 6. REPORT -- progress on inclusion of individual combo distribuntions (per type-method per triple) in GMP report; for stand-alone Reporter, the option appears in per-channel tree parameters, can be selected/unselected...
Commit: a28afd03e555b282fd3e499149e6167ace12f950
https://github.com/ehb54/ultrascan3/commit/a28afd03e555b282fd3e499149e6167ace12f950
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-11-14 (Tue, 14 Nov 2023)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | US_ProtDEV | 1.EXP. && 6. REPORT -- bug fixed for [plotting individual combo distributions] && prep steps for passing integration limits to plots from ReportItems...
Commit: ab7165fbe6e4b118509da5aecf9c43c325dbec51
https://github.com/ehb54/ultrascan3/commit/ab7165fbe6e4b118509da5aecf9c43c325dbec51
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-11-14 (Tue, 14 Nov 2023)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | US_ProtDEV | 1.EXP. && 6. REPORT -- passing integration limits to individual combo plots from ReportItems/updated tree in a stand-alone GMP Reporter && plot ranges; each pair value( range) with different color...
Commit: ac4ff833142476217b9f969a77a0ccc00b550c16
https://github.com/ehb54/ultrascan3/commit/ac4ff833142476217b9f969a77a0ccc00b550c16
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-11-14 (Tue, 14 Nov 2023)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | US_ProtDEV | 1.EXP. && 6. REPORT -- [bug fixed for -- ] passing integration limits to individual combo plots from ReportItems/updated tree in a stand-alone GMP Reporter && plot ranges; each pair value( range) with different color...
Commit: bbcd1f1ba8922ba302052b8d36ba6f195ef3908e
https://github.com/ehb54/ultrascan3/commit/bbcd1f1ba8922ba302052b8d36ba6f195ef3908e
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-11-17 (Fri, 17 Nov 2023)
Changed paths:
M gui/us_report_gui.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M utils/us_report_gmp.cpp
M utils/us_report_gmp.h
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: 76931932fe4cf64f09ce8d0d6444306f297e9607
https://github.com/ehb54/ultrascan3/commit/76931932fe4cf64f09ce8d0d6444306f297e9607
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-11-18 (Sat, 18 Nov 2023)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
Log Message:
-----------
Merge pull request #79 from samo38/master
ticket numbers: 202, 193
Commit: 83db31d553a11c86ddbe43e9129e1333c1bad5c0
https://github.com/ehb54/ultrascan3/commit/83db31d553a11c86ddbe43e9129e1333c1bad5c0
Author: gegorbet <gegorbet at gmail.com>
Date: 2023-11-20 (Mon, 20 Nov 2023)
Changed paths:
M .github/workflows/codeql-analysis.yml
M gui/us_report_gui.cpp
M gui/us_select_item.cpp
M gui/us_tmst_plot.cpp
M gui/us_tmst_plot.h
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_config/us_newxpnhost_db.cpp
M programs/us_config/us_xpnhost.cpp
M programs/us_config/us_xpnhost_db.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M utils/us_report_gmp.cpp
M utils/us_report_gmp.h
Log Message:
-----------
Merge branch 'master' of github.com:ehb54/ultrascan3
Commit: ebd69fe45c659582fe97d320c27ecf97003c0eff
https://github.com/ehb54/ultrascan3/commit/ebd69fe45c659582fe97d320c27ecf97003c0eff
Author: gegorbet <gegorbet at gmail.com>
Date: 2023-11-20 (Mon, 20 Nov 2023)
Changed paths:
M doc/manual/footer.us3
Log Message:
-----------
docmanual footer mods to change all pages
Commit: 04264333156a75a453491d8db25a40ed006e37e9
https://github.com/ehb54/ultrascan3/commit/04264333156a75a453491d8db25a40ed006e37e9
Author: gegorbet <gegorbet at gmail.com>
Date: 2023-11-20 (Mon, 20 Nov 2023)
Changed paths:
M doc/manual/images/us_edit.png
M doc/manual/images/us_edit_mwl.png
Log Message:
-----------
update us_edit,us_edit_mwl screenshots for initial manual pages in line with latest software
Commit: 5196f483495bcb98e68db7f0b739f24cd151560c
https://github.com/ehb54/ultrascan3/commit/5196f483495bcb98e68db7f0b739f24cd151560c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-11-29 (Wed, 29 Nov 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | 6. REPORT -- small bug fixed for run's detail temperature plot...
Commit: 0121636ecfb2f2251cc24213eeaa634a7ad97a16
https://github.com/ehb54/ultrascan3/commit/0121636ecfb2f2251cc24213eeaa634a7ad97a16
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-12-01 (Fri, 01 Dec 2023)
Changed paths:
M utils/us_constants.h
Log Message:
-----------
viscosity and density of water at 20C is updated
Commit: b4458e163c1c9581fb71c4b570ea7b3174b8d921
https://github.com/ehb54/ultrascan3/commit/b4458e163c1c9581fb71c4b570ea7b3174b8d921
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-12-01 (Fri, 01 Dec 2023)
Changed paths:
M utils/us_math2.cpp
Log Message:
-----------
A new approach to calculate the density and viscosity of water over temperature based on SEDNTERP paper publish in 2023 is applied
Commit: 18ab1112393d2d9e23e93dd6ad46b19ad82f03dd
https://github.com/ehb54/ultrascan3/commit/18ab1112393d2d9e23e93dd6ad46b19ad82f03dd
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-12-01 (Fri, 01 Dec 2023)
Changed paths:
M gui/us_buffer_gui.cpp
Log Message:
-----------
viscosity increament of buffers corrected
Commit: 30b8e8688cae33abbf60b4b2861671b38667b4fb
https://github.com/ehb54/ultrascan3/commit/30b8e8688cae33abbf60b4b2861671b38667b4fb
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-12-07 (Thu, 07 Dec 2023)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
Log Message:
-----------
GMP | 5. ANALYSIS -- rename 'Delete' to 'Cancel' for each active stage, not to confuse user about deletion of raw data...
Commit: 3676874e66e435cb699bb893feb30ea439580bee
https://github.com/ehb54/ultrascan3/commit/3676874e66e435cb699bb893feb30ea439580bee
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-12-08 (Fri, 08 Dec 2023)
Changed paths:
M utils/us_math2.cpp
Log Message:
-----------
add debug lines
Commit: 8fc8df980f02e775420241636d2eb8b86f9cd00a
https://github.com/ehb54/ultrascan3/commit/8fc8df980f02e775420241636d2eb8b86f9cd00a
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-12-08 (Fri, 08 Dec 2023)
Changed paths:
M etc/bufferComponents.xml
Log Message:
-----------
update buffer components
Commit: 2f9fc641e6af532aa953933c9b6e470344551ff6
https://github.com/ehb54/ultrascan3/commit/2f9fc641e6af532aa953933c9b6e470344551ff6
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-12-08 (Fri, 08 Dec 2023)
Changed paths:
M gui/us_buffer_gui.cpp
M gui/us_buffer_gui.h
Log Message:
-----------
add water to the list of buffer components, add a method to handle the water as buffer
Commit: d0e370ce7b2be1dd4010408155e699ed9cc51da1
https://github.com/ehb54/ultrascan3/commit/d0e370ce7b2be1dd4010408155e699ed9cc51da1
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-12-09 (Sat, 09 Dec 2023)
Changed paths:
M gui/us_buffer_gui.cpp
M gui/us_buffer_gui.h
Log Message:
-----------
fixed the issues with deleting and editing selected buffers
Commit: 9b62679f57eff06512e37abe09b6644355eac3a0
https://github.com/ehb54/ultrascan3/commit/9b62679f57eff06512e37abe09b6644355eac3a0
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-12-09 (Sat, 09 Dec 2023)
Changed paths:
M gui/us_buffer_gui.cpp
M gui/us_buffer_gui.h
Log Message:
-----------
listing the buffer components from DB and the localdisk fixed
Commit: 999da56a0969106427d79dddf43fddc7799dbb78
https://github.com/ehb54/ultrascan3/commit/999da56a0969106427d79dddf43fddc7799dbb78
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-12-09 (Sat, 09 Dec 2023)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
Log Message:
-----------
put the average value of all components' vbars instead of 0.72 for vbar20. The average vbar then gets adjusted to the simulation temperature.
Commit: a5f17091b3d8945234bf5aba9c56559ab34feee1
https://github.com/ehb54/ultrascan3/commit/a5f17091b3d8945234bf5aba9c56559ab34feee1
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-12-10 (Sun, 10 Dec 2023)
Changed paths:
M etc/bufferComponents.xml
M gui/us_buffer_gui.cpp
M gui/us_buffer_gui.h
M programs/us_astfem_sim/us_astfem_sim.cpp
M utils/us_constants.h
M utils/us_math2.cpp
Log Message:
-----------
Merge pull request #80 from samo38/master
fixed the temperature and buffer adjustment
Commit: 763ce6a9ece1597798510df1b241f309d3437c09
https://github.com/ehb54/ultrascan3/commit/763ce6a9ece1597798510df1b241f309d3437c09
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-12-11 (Mon, 11 Dec 2023)
Changed paths:
M utils/us_math2.cpp
M utils/us_math2.h
Log Message:
-----------
add DbgLv to US_Math2
Commit: ad4fd7630bff9b5e974ece649c054d2532562f3a
https://github.com/ehb54/ultrascan3/commit/ad4fd7630bff9b5e974ece649c054d2532562f3a
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-12-11 (Mon, 11 Dec 2023)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
Log Message:
-----------
replaced the plain averaging the vbar20 out of all components to weight averaging
Commit: 52851aefc5369fb947f4595070d523e2b2cc0058
https://github.com/ehb54/ultrascan3/commit/52851aefc5369fb947f4595070d523e2b2cc0058
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-12-12 (Tue, 12 Dec 2023)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
fixed issue with editing runID when a user deletes all characters
Commit: c007c58d8269230a666171bcc2f1154d36e9ec4a
https://github.com/ehb54/ultrascan3/commit/c007c58d8269230a666171bcc2f1154d36e9ec4a
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-12-12 (Tue, 12 Dec 2023)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: a1e5d81c1b61d9d818963073d3d5d38bbded68b3
https://github.com/ehb54/ultrascan3/commit/a1e5d81c1b61d9d818963073d3d5d38bbded68b3
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-12-12 (Tue, 12 Dec 2023)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
us_convert: fixed the issue of getting the error that current runID exists in the database when you reset the GUI after adding an experiment
Commit: 6c45f2356871ad831f810dd14ae43356fa615505
https://github.com/ehb54/ultrascan3/commit/6c45f2356871ad831f810dd14ae43356fa615505
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-12-12 (Tue, 12 Dec 2023)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_convert/us_convert_gui.cpp
M utils/us_math2.cpp
M utils/us_math2.h
Log Message:
-----------
Merge pull request #81 from samo38/master
new pull request
Commit: ae9708cc9cd091ad1046691ee7779ec31d48a467
https://github.com/ehb54/ultrascan3/commit/ae9708cc9cd091ad1046691ee7779ec31d48a467
Author: Administrator <usadmin at demeler1.uleth.ca>
Date: 2023-12-17 (Sun, 17 Dec 2023)
Changed paths:
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
Log Message:
-----------
us_pseudo3d_combine.cpp : extended plot min/max range per BD
Commit: aeed75322266712371e78d5ba7ae94bd50e548f0
https://github.com/ehb54/ultrascan3/commit/aeed75322266712371e78d5ba7ae94bd50e548f0
Author: ehb54 <brookes at uthscsa.edu>
Date: 2024-01-11 (Thu, 11 Jan 2024)
Changed paths:
M programs/us/us.cpp
Log Message:
-----------
us.cpp: do not display notice message if empty content
Commit: 750cc539a099775c3f1889ed3bec9f1abc6b493a
https://github.com/ehb54/ultrascan3/commit/750cc539a099775c3f1889ed3bec9f1abc6b493a
Author: ehb54 <brookes at uthscsa.edu>
Date: 2024-01-11 (Thu, 11 Jan 2024)
Changed paths:
M programs/us/us.cpp
Log Message:
-----------
us.cpp: skip notices with version.revision less than our running version
Commit: 245d1359484b62371d9a5986d4ad788fa092ab0b
https://github.com/ehb54/ultrascan3/commit/245d1359484b62371d9a5986d4ad788fa092ab0b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-01-14 (Sun, 14 Jan 2024)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP | 1. EXP. -- bug fixed for proper storing of solution comments internally and in the DB; proper read/write...
Commit: 5446ad8e2ced6acd2175bfd24d2ba3d6ffb28586
https://github.com/ehb54/ultrascan3/commit/5446ad8e2ced6acd2175bfd24d2ba3d6ffb28586
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-01-16 (Tue, 16 Jan 2024)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_experiment/us_experiment_gui_optima.cpp
M utils/us_xpn_data.cpp
Log Message:
-----------
GMP | 1. EXP., us_convert -- corrected format for channels' descriptions passed from ./makeall.sh -j10 EXP-to-XPN_viewer-to-us_convet: 'solname, comment'...
Commit: 64b6dacb3a096c82321be891c2a416bf23876996
https://github.com/ehb54/ultrascan3/commit/64b6dacb3a096c82321be891c2a416bf23876996
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-01-16 (Tue, 16 Jan 2024)
Changed paths:
M programs/us_convert/us_convert.cpp
Log Message:
-----------
used public method of QDir to make the absolute file path
Commit: 293cbdad757e4afc2db76d5641155eb580ff2829
https://github.com/ehb54/ultrascan3/commit/293cbdad757e4afc2db76d5641155eb580ff2829
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-01-16 (Tue, 16 Jan 2024)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M utils/us_xpn_data.cpp
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: 52d26a8cd3e83c4b2aa7204cc58046305f24d158
https://github.com/ehb54/ultrascan3/commit/52d26a8cd3e83c4b2aa7204cc58046305f24d158
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-01-17 (Wed, 17 Jan 2024)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
us_convert -- small bug fixed...
Commit: 8253b4de4c4a5323c11a83f5b4a76232c58ac264
https://github.com/ehb54/ultrascan3/commit/8253b4de4c4a5323c11a83f5b4a76232c58ac264
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-01-20 (Sat, 20 Jan 2024)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP 6. REPORT, us_reporter_gmp -- some dbg stats...
Commit: 7c71661a97ea80ecf45ed481bec29a129e3e9017
https://github.com/ehb54/ultrascan3/commit/7c71661a97ea80ecf45ed481bec29a129e3e9017
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-01-20 (Sat, 20 Jan 2024)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP 6. REPORT, us_reporter_gmp -- some dbg stats (1)...
Commit: bfbc1d93fe052160b7292e7daeea19b06342bd09
https://github.com/ehb54/ultrascan3/commit/bfbc1d93fe052160b7292e7daeea19b06342bd09
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-01-21 (Sun, 21 Jan 2024)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP 6. REPORT, us_reporter_gmp -- some dbg stats (2)...
Commit: 0f52d5b8164dbbd8041d12bf87adc85981471b03
https://github.com/ehb54/ultrascan3/commit/0f52d5b8164dbbd8041d12bf87adc85981471b03
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-01-21 (Sun, 21 Jan 2024)
Changed paths:
M gui/us_extinction_gui.cpp
Log Message:
-----------
changed list widget item text to headers found in csv file, each header is separated by TAB, add the index addressing to the position of data in the v_wavelength vector to each of the list widget item
Commit: 8e0efe0d333e365e72ecf45c3d1921a82235c4ed
https://github.com/ehb54/ultrascan3/commit/8e0efe0d333e365e72ecf45c3d1921a82235c4ed
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-01-21 (Sun, 21 Jan 2024)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_reporter_gmp/us_reporter_gmp_main.cpp
M utils/us_db2.cpp
Log Message:
-----------
GMP 6. REPORT, us_reporter_gmp -- test case, temporary, will be reverted...
Commit: 34024de95e36b7ffabf11a453b8f9c8eb053f1c5
https://github.com/ehb54/ultrascan3/commit/34024de95e36b7ffabf11a453b8f9c8eb053f1c5
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-01-21 (Sun, 21 Jan 2024)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP 6. REPORT, us_reporter_gmp -- test case, temporary, will be reverted (2)...
Commit: d6285665a4edf35ff559447597bf9a088e0346d4
https://github.com/ehb54/ultrascan3/commit/d6285665a4edf35ff559447597bf9a088e0346d4
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-01-22 (Mon, 22 Jan 2024)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_reporter_gmp/us_reporter_gmp_main.cpp
Log Message:
-----------
GMP 6. REPORT, us_reporter_gmp -- revert for test cases...
Commit: aadd3f1f910edd237bc1c55688937f3126b3a909
https://github.com/ehb54/ultrascan3/commit/aadd3f1f910edd237bc1c55688937f3126b3a909
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-01-22 (Mon, 22 Jan 2024)
Changed paths:
M gui/us_extinction_gui.cpp
M gui/us_extinction_gui.h
Log Message:
-----------
Add CustomListWidgetItem in order to sort the list by column number
Commit: 7b16735044e17f536a9626261982f14ead55be79
https://github.com/ehb54/ultrascan3/commit/7b16735044e17f536a9626261982f14ead55be79
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-01-22 (Mon, 22 Jan 2024)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_reporter_gmp/us_reporter_gmp_main.cpp
M utils/us_db2.cpp
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: 2f5e9bfe5e661b37bd296df58afa77c2ed5db120
https://github.com/ehb54/ultrascan3/commit/2f5e9bfe5e661b37bd296df58afa77c2ed5db120
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-01-23 (Tue, 23 Jan 2024)
Changed paths:
M gui/us_extinction_gui.cpp
M gui/us_extinction_gui.h
M programs/us_convert/us_convert.cpp
Log Message:
-----------
Merge pull request #83 from samo38/master
fixed column naming in us_extinction program
Commit: 3fd49f8ca7c522913fc4587a45acd98aed99478a
https://github.com/ehb54/ultrascan3/commit/3fd49f8ca7c522913fc4587a45acd98aed99478a
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-01-23 (Tue, 23 Jan 2024)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.h
M programs/us_audit_trail_gmp/us_audit_trail_gmp.pro
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP Audit Trail -- started to add .PDF print/view in addition to gui...
Commit: 176d3ae750c9f99c56879ba95f812b6b2aaf4656
https://github.com/ehb54/ultrascan3/commit/176d3ae750c9f99c56879ba95f812b6b2aaf4656
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-01-24 (Wed, 24 Jan 2024)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.h
Log Message:
-----------
GMP Audit Trail -- GMP init. && LIVE_UPT. operations into separate consize audit trail .pdf...
Commit: c319b082bb9551f4b6fcaa61e0528055197ef12c
https://github.com/ehb54/ultrascan3/commit/c319b082bb9551f4b6fcaa61e0528055197ef12c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-01-24 (Wed, 24 Jan 2024)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.h
Log Message:
-----------
GMP Audit Trail -- info on all stages added...
Commit: 85ed37683d2deba506a3bac5a0460fb97fe6b795
https://github.com/ehb54/ultrascan3/commit/85ed37683d2deba506a3bac5a0460fb97fe6b795
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-01-24 (Wed, 24 Jan 2024)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.h
Log Message:
-----------
GMP Audit Trail -- bug fixed, title added...
Commit: 8d142caf99829f3ac653e3a7c0fb26a779cfe6aa
https://github.com/ehb54/ultrascan3/commit/8d142caf99829f3ac653e3a7c0fb26a779cfe6aa
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-01-24 (Wed, 24 Jan 2024)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.h
Log Message:
-----------
GMP Audit Trail -- current state of eSigs added as separate page...
Commit: 002acc384db86597c0621a7df603d15c463177bf
https://github.com/ehb54/ultrascan3/commit/002acc384db86597c0621a7df603d15c463177bf
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-01-24 (Wed, 24 Jan 2024)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP paginated printing -- seems to fixed a serious bug for paginated painting of GP reports which previously resulted in quite large .PDF sizes; needs extensive testing...
Commit: 376816116db537722483c60496f8999da9611c8a
https://github.com/ehb54/ultrascan3/commit/376816116db537722483c60496f8999da9611c8a
Author: ehb54 <brookes at uthscsa.edu>
Date: 2024-01-25 (Thu, 25 Jan 2024)
Changed paths:
M us_somo/develop/src/us_hydrodyn_asab1.cpp
M us_somo/develop/src/us_hydrodyn_supc.cpp
M us_somo/develop/src/us_saxs_util_asab1.cpp
M us_somo/develop/src/us_saxs_util_hydro_supc_hydro.cpp
Log Message:
-----------
codeql scanf fixes
Commit: 0a76b78a495a176fae27d8fa5eb9defa78b61eba
https://github.com/ehb54/ultrascan3/commit/0a76b78a495a176fae27d8fa5eb9defa78b61eba
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-01-25 (Thu, 25 Jan 2024)
Changed paths:
M us_somo/develop/src/us_hydrodyn_asab1.cpp
M us_somo/develop/src/us_hydrodyn_supc.cpp
M us_somo/develop/src/us_saxs_util_asab1.cpp
M us_somo/develop/src/us_saxs_util_hydro_supc_hydro.cpp
Log Message:
-----------
Merge pull request #84 from ehb54/codeqlscanfix
codeql scanf fixes
Commit: 6f41d43dd307e9e72aed6974d3a81feac4ab7590
https://github.com/ehb54/ultrascan3/commit/6f41d43dd307e9e72aed6974d3a81feac4ab7590
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-01-25 (Thu, 25 Jan 2024)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
6. Report | GMP Reporter -- added progress dialog for printing large reports...
Commit: e5c05e04ca8fc84365455ba639e24b4286bc78c0
https://github.com/ehb54/ultrascan3/commit/e5c05e04ca8fc84365455ba639e24b4286bc78c0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-01-26 (Fri, 26 Jan 2024)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
6. Report | GMP Reporter, eSign -- minor fixes...
Commit: 3ce1bfdac976ecf483a39c01adecffe92e835363
https://github.com/ehb54/ultrascan3/commit/3ce1bfdac976ecf483a39c01adecffe92e835363
Author: ehb54 <brookes at uthscsa.edu>
Date: 2024-01-30 (Tue, 30 Jan 2024)
Changed paths:
M utils/libus_utils.pro
A utils/us_geturl.cpp
A utils/us_geturl.h
Log Message:
-----------
us_geturl.h - class to get contents of network accessible url
Commit: 3b866d19ce60de39cbe64f72f472e91af861601e
https://github.com/ehb54/ultrascan3/commit/3b866d19ce60de39cbe64f72f472e91af861601e
Author: ehb54 <brookes at uthscsa.edu>
Date: 2024-01-30 (Tue, 30 Jan 2024)
Changed paths:
M programs/us/us.cpp
M programs/us/us.h
M utils/us_geturl.cpp
Log Message:
-----------
notice updates - no db, use url
Commit: 571bba01072d0403d4e4128a78bb0b599791197a
https://github.com/ehb54/ultrascan3/commit/571bba01072d0403d4e4128a78bb0b599791197a
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-01-30 (Tue, 30 Jan 2024)
Changed paths:
M programs/us/us.cpp
M programs/us/us.h
M utils/libus_utils.pro
A utils/us_geturl.cpp
A utils/us_geturl.h
Log Message:
-----------
Merge pull request #85 from ehb54/usnoticeurl
Replace notices database with url
Commit: a84fd515e31ee345f0022106f8edd7426bbd0a2a
https://github.com/ehb54/ultrascan3/commit/a84fd515e31ee345f0022106f8edd7426bbd0a2a
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-02-01 (Thu, 01 Feb 2024)
Changed paths:
M programs/us_query_rmsd/us_query_rmsd.pro
Log Message:
-----------
add us_fematch to the pro file
Commit: 8f200d4b629db86c0abd54ca555cb40d38ac061c
https://github.com/ehb54/ultrascan3/commit/8f200d4b629db86c0abd54ca555cb40d38ac061c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-02-01 (Thu, 01 Feb 2024)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
A programs/us_reassign_reviewers_gmp/us_reassign_reviewers_gmp.pro
A programs/us_reassign_reviewers_gmp/us_reassign_reviewers_gmp_main.cpp
Log Message:
-----------
Progress on a new stand-alone program for reassigning some or all reviewers; not meant to be in the menu, will be used by admin when needed...
Commit: 30d4b2ec5964f27d745da06e1b7264b4a1e55988
https://github.com/ehb54/ultrascan3/commit/30d4b2ec5964f27d745da06e1b7264b4a1e55988
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-02-02 (Fri, 02 Feb 2024)
Changed paths:
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_query_rmsd/us_query_rmsd.h
M programs/us_query_rmsd/us_query_rmsd.pro
A programs/us_query_rmsd/us_query_rmsd_sim.cpp
A programs/us_query_rmsd/us_query_rmsd_sim.h
Log Message:
-----------
create the simulation widget
Commit: 840f105d5b77781ad389de354aa028ad841f0bfa
https://github.com/ehb54/ultrascan3/commit/840f105d5b77781ad389de354aa028ad841f0bfa
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-02-02 (Fri, 02 Feb 2024)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
Log Message:
-----------
Reassigning some or all reviewers -- udpate; all completed GMP runs filtered for partial esigning; status for each reviewer captured at reading...
Commit: 8f609aec08219e98a6f7e39b25e6d4eb7880b239
https://github.com/ehb54/ultrascan3/commit/8f609aec08219e98a6f7e39b25e6d4eb7880b239
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-02-02 (Fri, 02 Feb 2024)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
Log Message:
-----------
Reassigning some or all reviewers -- udpate; determine per rev. section (opers, revs, apprs) - if all from given section completed eSigning; is yes, preclude replacement...
Commit: ea77f034e3ddd9221c8d9c36758d61436b0687f5
https://github.com/ehb54/ultrascan3/commit/ea77f034e3ddd9221c8d9c36758d61436b0687f5
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-02-02 (Fri, 02 Feb 2024)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
Log Message:
-----------
Reassigning some or all reviewers -- udpate; dealing with groups {oper,rev,appr}: treat various scenarios - all in group esigned, partially esigned, none esigend wihtin a role; update lists accordingly...
Commit: 40fe702facacb78d516cb2614aeff40b62826edd
https://github.com/ehb54/ultrascan3/commit/40fe702facacb78d516cb2614aeff40b62826edd
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-02-03 (Sat, 03 Feb 2024)
Changed paths:
M programs/us_fematch/us_fematch.cpp
M programs/us_fematch/us_fematch.h
Log Message:
-----------
add auto loading and ploting method
Commit: 431e1846f4e9d91f7089cda2bf4a5138d9e397ad
https://github.com/ehb54/ultrascan3/commit/431e1846f4e9d91f7089cda2bf4a5138d9e397ad
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-02-03 (Sat, 03 Feb 2024)
Changed paths:
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_query_rmsd/us_query_rmsd.h
M programs/us_query_rmsd/us_query_rmsd_sim.cpp
M programs/us_query_rmsd/us_query_rmsd_sim.h
Log Message:
-----------
using us_fematch directly in the query rmsd code
Commit: 2c72eb9ff2a88d60ae576984f4d2bf7fc14bce3a
https://github.com/ehb54/ultrascan3/commit/2c72eb9ff2a88d60ae576984f4d2bf7fc14bce3a
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-02-03 (Sat, 03 Feb 2024)
Changed paths:
M programs/us_query_rmsd/us_query_rmsd.pro
R programs/us_query_rmsd/us_query_rmsd_sim.cpp
R programs/us_query_rmsd/us_query_rmsd_sim.h
Log Message:
-----------
delete the us_query_rmsd_sim widget
Commit: f83e83fd1112ec762d2ce418d40f5a2a04182d92
https://github.com/ehb54/ultrascan3/commit/f83e83fd1112ec762d2ce418d40f5a2a04182d92
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-02-03 (Sat, 03 Feb 2024)
Changed paths:
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_query_rmsd/us_query_rmsd.h
Log Message:
-----------
replace us_query_rmsd_sim with us_fematch
Commit: 9ce54c1010b9484d635b9163cf877b4349159643
https://github.com/ehb54/ultrascan3/commit/9ce54c1010b9484d635b9163cf877b4349159643
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-02-03 (Sat, 03 Feb 2024)
Changed paths:
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_query_rmsd/us_query_rmsd.h
Log Message:
-----------
fixed indentation
Commit: 14c893caa3dde9d130c558ef4d0bac39472cee2c
https://github.com/ehb54/ultrascan3/commit/14c893caa3dde9d130c558ef4d0bac39472cee2c
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-02-03 (Sat, 03 Feb 2024)
Changed paths:
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_query_rmsd/us_query_rmsd.h
Log Message:
-----------
remove noise processing
Commit: be632140482e96ed48b5d17fc69b9dd4cf2df298
https://github.com/ehb54/ultrascan3/commit/be632140482e96ed48b5d17fc69b9dd4cf2df298
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-02-04 (Sun, 04 Feb 2024)
Changed paths:
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_query_rmsd/us_query_rmsd.h
Log Message:
-----------
encapsulate all necessary data into a structure
Commit: 6fa6756f711df1511b0f9ea0738274678aedf8c7
https://github.com/ehb54/ultrascan3/commit/6fa6756f711df1511b0f9ea0738274678aedf8c7
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-02-04 (Sun, 04 Feb 2024)
Changed paths:
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_query_rmsd/us_query_rmsd.h
Log Message:
-----------
prepared init data to load simulation widget from us_fematch
Commit: 5b0a621c9a4c005629d44a30557e67922a3f7ede
https://github.com/ehb54/ultrascan3/commit/5b0a621c9a4c005629d44a30557e67922a3f7ede
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-02-05 (Mon, 05 Feb 2024)
Changed paths:
M programs/us_fematch/us_fematch.cpp
M programs/us_fematch/us_fematch.h
Log Message:
-----------
finished auto_load_simulate
Commit: 7f035a026738a79440563993d17938a8693444c7
https://github.com/ehb54/ultrascan3/commit/7f035a026738a79440563993d17938a8693444c7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-02-05 (Mon, 05 Feb 2024)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
Log Message:
-----------
Reassigning some or all reviewers -- udpate; based on updated {o|r|a} group(s), create updated eSignStatusJson; retain 'signed', updated 'to_sign'; also update {o|r|a} roles arrays...
Commit: 1b94fea179ac6c51395bdce2638ffb78eeb7f7ad
https://github.com/ehb54/ultrascan3/commit/1b94fea179ac6c51395bdce2638ffb78eeb7f7ad
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-02-05 (Mon, 05 Feb 2024)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
Log Message:
-----------
[Bug fix for] Reassigning some or all reviewers -- udpate; based on updated {o|r|a} group(s), create updated eSignStatusJson; retain 'signed', updated 'to_sign'; also update {o|r|a} roles arrays...
Commit: a0fa382e470302f0c93d7ca94273059b2955a0d9
https://github.com/ehb54/ultrascan3/commit/a0fa382e470302f0c93d7ca94273059b2955a0d9
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-02-05 (Mon, 05 Feb 2024)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
Log Message:
-----------
Reassigning some or all reviewers -- after reassingnig, update gui with new o|r|a after successful db query; do not otherwise...
Commit: 9bbccaa43ffa27fa09f522c43763ec1580b30ca9
https://github.com/ehb54/ultrascan3/commit/9bbccaa43ffa27fa09f522c43763ec1580b30ca9
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-02-05 (Mon, 05 Feb 2024)
Changed paths:
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_query_rmsd/us_query_rmsd.h
Log Message:
-----------
delete commented lines, pass DataBundle to get_metadata
Commit: d8d5b3a532c439f42e1e5f682eba6c96677cbb0b
https://github.com/ehb54/ultrascan3/commit/d8d5b3a532c439f42e1e5f682eba6c96677cbb0b
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-02-05 (Mon, 05 Feb 2024)
Changed paths:
M programs/us_fematch/us_fematch.cpp
M programs/us_fematch/us_fematch.h
Log Message:
-----------
add close event to close cild widgets
Commit: 9a17affc639ab697b514983f66bdf09e38fbfd10
https://github.com/ehb54/ultrascan3/commit/9a17affc639ab697b514983f66bdf09e38fbfd10
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-02-05 (Mon, 05 Feb 2024)
Changed paths:
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_query_rmsd/us_query_rmsd.h
Log Message:
-----------
add close event to close cild widgets in us_query_rmsd
Commit: b1ddfd4cf1163a8b9172b83372a5656a71a32b53
https://github.com/ehb54/ultrascan3/commit/b1ddfd4cf1163a8b9172b83372a5656a71a32b53
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-02-06 (Tue, 06 Feb 2024)
Changed paths:
M programs/us/us.cpp
M programs/us/us.h
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.h
M programs/us_audit_trail_gmp/us_audit_trail_gmp.pro
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
A programs/us_reassign_reviewers_gmp/us_reassign_reviewers_gmp.pro
A programs/us_reassign_reviewers_gmp/us_reassign_reviewers_gmp_main.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M us_somo/develop/src/us_hydrodyn_asab1.cpp
M us_somo/develop/src/us_hydrodyn_supc.cpp
M us_somo/develop/src/us_saxs_util_asab1.cpp
M us_somo/develop/src/us_saxs_util_hydro_supc_hydro.cpp
M utils/libus_utils.pro
A utils/us_geturl.cpp
A utils/us_geturl.h
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: 8075a167e92930043984732b3810d5456afb4453
https://github.com/ehb54/ultrascan3/commit/8075a167e92930043984732b3810d5456afb4453
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-02-07 (Wed, 07 Feb 2024)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
Log Message:
-----------
Reassigning some or all reviewers -- bug fixed as to enabling/disabling reassigning roles per esign status after upploading new report...
Commit: 77e8ee7dc59abba95bf78896b69d198521c577ae
https://github.com/ehb54/ultrascan3/commit/77e8ee7dc59abba95bf78896b69d198521c577ae
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-02-07 (Wed, 07 Feb 2024)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
Log Message:
-----------
Reassigning some or all reviewers -- before making changes: check if all roles' lists are the same (stop if yes); otherwise list changes and ask to confirm...
Commit: a636c19acccbf75be85d77eca92340f3b6a04d0a
https://github.com/ehb54/ultrascan3/commit/a636c19acccbf75be85d77eca92340f3b6a04d0a
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-02-08 (Thu, 08 Feb 2024)
Changed paths:
M programs/us_fematch/us_fematch.cpp
M programs/us_fematch/us_fematch.h
Log Message:
-----------
added a signal to the astfem_rsa simulation to track the progress to show in the query rmsd program.
Commit: 6c8a5139dd403c5358f1f18694305c57c8d59d16
https://github.com/ehb54/ultrascan3/commit/6c8a5139dd403c5358f1f18694305c57c8d59d16
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-02-08 (Thu, 08 Feb 2024)
Changed paths:
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_query_rmsd/us_query_rmsd.h
Log Message:
-----------
added the progress bar
Commit: 0a268cd505c915e8bcdf5f85fb5066fdc5dba17a
https://github.com/ehb54/ultrascan3/commit/0a268cd505c915e8bcdf5f85fb5066fdc5dba17a
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-02-08 (Thu, 08 Feb 2024)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: e31b54110d6397f7d25227f0ffb944e17397da63
https://github.com/ehb54/ultrascan3/commit/e31b54110d6397f7d25227f0ffb944e17397da63
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-02-08 (Thu, 08 Feb 2024)
Changed paths:
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M utils/us_link_ssl.cpp
Log Message:
-----------
GMP | 2. LIVE_UPDATE -- if network connection to Optima dropped, stop all updates, inform user & return to Optima run Manager...
Commit: 4f95a2f21e0d4e21560000361481aca8df250ca9
https://github.com/ehb54/ultrascan3/commit/4f95a2f21e0d4e21560000361481aca8df250ca9
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-02-08 (Thu, 08 Feb 2024)
Changed paths:
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
GMP | 2. LIVE_UPDATE -- [forgot to do the connectivity check also if trying to re-attach] if network connection to Optima dropped, stop all updates, inform user & return to Optima run Manager...
Commit: c4dfe152b85be000d80c933d49cefb599f7b3c98
https://github.com/ehb54/ultrascan3/commit/c4dfe152b85be000d80c933d49cefb599f7b3c98
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-02-08 (Thu, 08 Feb 2024)
Changed paths:
M programs/us_fematch/us_fematch.cpp
M programs/us_fematch/us_fematch.h
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_query_rmsd/us_query_rmsd.h
M programs/us_query_rmsd/us_query_rmsd.pro
Log Message:
-----------
Merge pull request #86 from samo38/master
simulation button in the query rmsd program
Commit: 2bf38e2b99a26183cbdeea17a74c743867a6f70f
https://github.com/ehb54/ultrascan3/commit/2bf38e2b99a26183cbdeea17a74c743867a6f70f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-02-08 (Thu, 08 Feb 2024)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
Reassigning some or all reviewers -- keep track on all replacements per groups made by admin(s) at different times for the same GMP report; since some reviewers can be replaced, also keep track on original values created in 1. EXP; this will be used in audit trail...
Commit: a02b0ec3c8e82287cedee0c74e5df70528815b0a
https://github.com/ehb54/ultrascan3/commit/a02b0ec3c8e82287cedee0c74e5df70528815b0a
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-02-12 (Mon, 12 Feb 2024)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | 6. REPORT -- make all links (to models) in the GMP report read-only...
Commit: 9709ef71415ae505e4a977067337bb47f0712861
https://github.com/ehb54/ultrascan3/commit/9709ef71415ae505e4a977067337bb47f0712861
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-02-12 (Mon, 12 Feb 2024)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.h
Log Message:
-----------
GMP | Audit Trail -- information on (multiple) reassignings of reviewers by admin captured & presented in GUI & .pdf of the audit trail: who, when, old-new names per role groups ...
Commit: 1a846647784efd08ada959e0035112a9e2a65318
https://github.com/ehb54/ultrascan3/commit/1a846647784efd08ada959e0035112a9e2a65318
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-02-14 (Wed, 14 Feb 2024)
Changed paths:
M programs/us_convert/us_get_run.cpp
Log Message:
-----------
US_convert -- before deletion, check if data are required by GMP (or R&D) framework; R&D will be removed when we decide on exact condition(s) on GMP disqualification...
Commit: 741064ddcdda19cc64fa9a69842bc68df503375c
https://github.com/ehb54/ultrascan3/commit/741064ddcdda19cc64fa9a69842bc68df503375c
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-02-19 (Mon, 19 Feb 2024)
Changed paths:
M admin/release/ubuntu/Dockerfile
Log Message:
-----------
Update Dockerfile
qt to 5.15.12
Commit: 4c019176ee61f40eaed886f0bc140a28a80a21b2
https://github.com/ehb54/ultrascan3/commit/4c019176ee61f40eaed886f0bc140a28a80a21b2
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-02-19 (Mon, 19 Feb 2024)
Changed paths:
M gui/libus_gui.pro
A gui/us_csv_loader.cpp
A gui/us_csv_loader.h
Log Message:
-----------
introduce us_csv_loader class to parse csv files
Commit: f2edd634360c37826f11060de77f8b781fda030a
https://github.com/ehb54/ultrascan3/commit/f2edd634360c37826f11060de77f8b781fda030a
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-02-19 (Mon, 19 Feb 2024)
Changed paths:
M gui/us_extinction_gui.cpp
Log Message:
-----------
use us_csv_loader to load csv files
Commit: f3c0633d759792927067f299fae7e1b77933b41d
https://github.com/ehb54/ultrascan3/commit/f3c0633d759792927067f299fae7e1b77933b41d
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-02-20 (Tue, 20 Feb 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
initialized the us_csv_loader widget
Commit: 48d6af66a857d85553c04c8c0b19980fe9572527
https://github.com/ehb54/ultrascan3/commit/48d6af66a857d85553c04c8c0b19980fe9572527
Author: ehb54 <brookes at uthscsa.edu>
Date: 2024-02-21 (Wed, 21 Feb 2024)
Changed paths:
A admin/release/ubuntu_qt6/Dockerfile
Log Message:
-----------
initial dockerfile for qt6 source compile
Commit: dbb9f8733215caa92c84d11c9f686a757de98846
https://github.com/ehb54/ultrascan3/commit/dbb9f8733215caa92c84d11c9f686a757de98846
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-02-28 (Wed, 28 Feb 2024)
Changed paths:
M gui/us_buffer_gui.cpp
Log Message:
-----------
clean data after add or cancel the new buffer
Commit: 915b8b27abbcfdc3c006c70c1da359b323553458
https://github.com/ehb54/ultrascan3/commit/915b8b27abbcfdc3c006c70c1da359b323553458
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-02-28 (Wed, 28 Feb 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
add menu bar on right clicking on each cell of the table widget
Commit: f3d4d4959fe955c5b2a70d567d4289de917e01a9
https://github.com/ehb54/ultrascan3/commit/f3d4d4959fe955c5b2a70d567d4289de917e01a9
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-02-28 (Wed, 28 Feb 2024)
Changed paths:
M admin/release/ubuntu/Dockerfile
A admin/release/ubuntu_qt6/Dockerfile
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: af6888ed18fb08ef5c65607d981e70017298a958
https://github.com/ehb54/ultrascan3/commit/af6888ed18fb08ef5c65607d981e70017298a958
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-03-01 (Fri, 01 Mar 2024)
Changed paths:
M README.md
Log Message:
-----------
Update README.md
Commit: f1bbd3d6b2d64a9cedcf0b588cdbc5d7225ec422
https://github.com/ehb54/ultrascan3/commit/f1bbd3d6b2d64a9cedcf0b588cdbc5d7225ec422
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-04 (Mon, 04 Mar 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
add delete action to customtablewidget, add header handling and highlighting functions
Commit: 8e2a598a7a44036eb91c279bc009b6b29f12495e
https://github.com/ehb54/ultrascan3/commit/8e2a598a7a44036eb91c279bc009b6b29f12495e
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-04 (Mon, 04 Mar 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
add checking table in terms of size and data type, correct the connect definitions
Commit: 9b4c39301145f0c04d469bc6fcc9dd0d1ece0f29
https://github.com/ehb54/ultrascan3/commit/9b4c39301145f0c04d469bc6fcc9dd0d1ece0f29
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-04 (Mon, 04 Mar 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
add get_data, handle accept and reject functions
Commit: ebdb3c29308562f5b8f6703e9853be40f9d66aa4
https://github.com/ehb54/ultrascan3/commit/ebdb3c29308562f5b8f6703e9853be40f9d66aa4
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-04 (Mon, 04 Mar 2024)
Changed paths:
M gui/us_csv_loader.cpp
Log Message:
-----------
check if the file contains ASCII ASCII text characters.
Commit: 1c82cf3a4365a59bf55e92f05d56d8b9d334b546
https://github.com/ehb54/ultrascan3/commit/1c82cf3a4365a59bf55e92f05d56d8b9d334b546
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-05 (Tue, 05 Mar 2024)
Changed paths:
M gui/us_buffer_gui.cpp
Log Message:
-----------
remove buffer components from selected buffer list after checking on the Manual
Commit: e71250cfd7d44c42755dd908edf6405bcfb5a094
https://github.com/ehb54/ultrascan3/commit/e71250cfd7d44c42755dd908edf6405bcfb5a094
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-05 (Tue, 05 Mar 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
refine setting message to the csv_loader widget
Commit: 6d90000444206607d7dc443dfec4bc11be63356e
https://github.com/ehb54/ultrascan3/commit/6d90000444206607d7dc443dfec4bc11be63356e
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-05 (Tue, 05 Mar 2024)
Changed paths:
M gui/us_extinction_gui.cpp
Log Message:
-----------
initial using csv_loader to parse data
Commit: 3f05a3a6e1ca4e1fd37a7e3852076f5695bfe6ff
https://github.com/ehb54/ultrascan3/commit/3f05a3a6e1ca4e1fd37a7e3852076f5695bfe6ff
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-05 (Tue, 05 Mar 2024)
Changed paths:
M gui/us_csv_loader.cpp
Log Message:
-----------
there was a change in signals of QButtonGroup after QT_VERSION 5.15 that is fixed
Commit: 71b38f988ca8df2072b71adc86660f686fee522f
https://github.com/ehb54/ultrascan3/commit/71b38f988ca8df2072b71adc86660f686fee522f
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-05 (Tue, 05 Mar 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
separate the CustomTableWidget coding into .cpp and .h files
Commit: 39ea4e24b7e30cf1d9cf3d6515e9e9aab380964f
https://github.com/ehb54/ultrascan3/commit/39ea4e24b7e30cf1d9cf3d6515e9e9aab380964f
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-05 (Tue, 05 Mar 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
get file information from the public method get_file_info, fixed issued with when number of column differs in each row after splitting, add gen_alpha_list method to generate headers based on iterattive alphabets
Commit: 2f472d4ec4d0e346d6a38fcc23a27daab28f8d32
https://github.com/ehb54/ultrascan3/commit/2f472d4ec4d0e346d6a38fcc23a27daab28f8d32
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-05 (Tue, 05 Mar 2024)
Changed paths:
M gui/us_extinction_gui.cpp
M gui/us_extinction_gui.h
Log Message:
-----------
comment out the reading function, no need for it; changed the add_wavelength and loadScan function to parse data through US_CSV_Loader widget
Commit: b8a94ae1046c486b90c96fc34220f4b22a3a7796
https://github.com/ehb54/ultrascan3/commit/b8a94ae1046c486b90c96fc34220f4b22a3a7796
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-05 (Tue, 05 Mar 2024)
Changed paths:
M README.md
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: 06e25c065c77a1e2e8cdd4af490bbcbdeb4341fc
https://github.com/ehb54/ultrascan3/commit/06e25c065c77a1e2e8cdd4af490bbcbdeb4341fc
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-06 (Wed, 06 Mar 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
add NONE type to the delimiter types to better handle splitting lines, handle new delimiter char input by user
Commit: 948a0a475b43dad209f5d543db9887f3be1903a9
https://github.com/ehb54/ultrascan3/commit/948a0a475b43dad209f5d543db9887f3be1903a9
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-06 (Wed, 06 Mar 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
add csv file save function to US_CSV_Loader
Commit: 37b98a981cdd277ba976bc02f3264f929b5b80b5
https://github.com/ehb54/ultrascan3/commit/37b98a981cdd277ba976bc02f3264f929b5b80b5
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-06 (Wed, 06 Mar 2024)
Changed paths:
M gui/us_extinction_gui.cpp
Log Message:
-----------
updated the message text to CSV_Loader widget
Commit: 740c1840d6b325a51fea22ddb3154ce663abf036
https://github.com/ehb54/ultrascan3/commit/740c1840d6b325a51fea22ddb3154ce663abf036
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-06 (Wed, 06 Mar 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
separate opening the file and parsing it; add set_filepath function that make you set the filepath out of open push button
Commit: 90834b0919d938c40a84fdd4180add05f65dc1e7
https://github.com/ehb54/ultrascan3/commit/90834b0919d938c40a84fdd4180add05f65dc1e7
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-06 (Wed, 06 Mar 2024)
Changed paths:
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
Log Message:
-----------
used US_CSV_Loader to parse file in the us_spectrum program
Commit: f5b431e68a5bb1af73ef1b1f61827eddb9d1bfd2
https://github.com/ehb54/ultrascan3/commit/f5b431e68a5bb1af73ef1b1f61827eddb9d1bfd2
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-06 (Wed, 06 Mar 2024)
Changed paths:
M programs/us_spectrum/us_spectrum.h
Log Message:
-----------
fixed indentation
Commit: aa1c70771fefc27fbea5a7f0597db0d85c27eb80
https://github.com/ehb54/ultrascan3/commit/aa1c70771fefc27fbea5a7f0597db0d85c27eb80
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-03-07 (Thu, 07 Mar 2024)
Changed paths:
M gui/libus_gui.pro
M gui/us_buffer_gui.cpp
A gui/us_csv_loader.cpp
A gui/us_csv_loader.h
M gui/us_extinction_gui.cpp
M gui/us_extinction_gui.h
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
Log Message:
-----------
Merge pull request #87 from samo38/master
Created new widget to parse text files
Commit: f75cb324a247852de6b086677cd0c22524f3b2b8
https://github.com/ehb54/ultrascan3/commit/f75cb324a247852de6b086677cd0c22524f3b2b8
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-06 (Wed, 06 Mar 2024)
Changed paths:
M gui/us_csv_loader.cpp
Log Message:
-----------
fixed the issue with process crash when nothing loaded and OK button pressed in the CSV_Loader
Commit: bdf65e0c1ad7ce493568d1177f5bd799ca8175e1
https://github.com/ehb54/ultrascan3/commit/bdf65e0c1ad7ce493568d1177f5bd799ca8175e1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-03-06 (Wed, 06 Mar 2024)
Changed paths:
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
GMP | 2. LIVE_UPDATE -- [correction to prior commit for]: if network connection to Optima dropped, stop all updates, inform user & return to Optima run Manager...
Commit: 775e65e72f47cbdb41ab18d3753b891c7f193718
https://github.com/ehb54/ultrascan3/commit/775e65e72f47cbdb41ab18d3753b891c7f193718
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-07 (Thu, 07 Mar 2024)
Changed paths:
M gui/us_csv_loader.cpp
Log Message:
-----------
fill the default table with empty items as opening the widget
Commit: 99400479c4f61fe197a92d121593faf8f2646a6c
https://github.com/ehb54/ultrascan3/commit/99400479c4f61fe197a92d121593faf8f2646a6c
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-07 (Thu, 07 Mar 2024)
Changed paths:
M programs/us_pseudo_absorbance/us_pabs_common.cpp
M programs/us_pseudo_absorbance/us_pabs_common.h
Log Message:
-----------
remove excess data stored in the CCW_ITEM class
Commit: 811db7bed1010d7765adb0c3642efa74eba2f7aa
https://github.com/ehb54/ultrascan3/commit/811db7bed1010d7765adb0c3642efa74eba2f7aa
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-08 (Fri, 08 Mar 2024)
Changed paths:
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.h
M programs/us_pseudo_absorbance/us_pseudo_absorbance.pro
M programs/us_pseudo_absorbance/us_remove_ri.cpp
Log Message:
-----------
removed ccw deleting widgets, get us_remove_ri and us_convert_sca code compatible with new CCW_item class, add a new functionality to load multiple runID
Commit: b792b23455814195d760961e690a666a5e955561
https://github.com/ehb54/ultrascan3/commit/b792b23455814195d760961e690a666a5e955561
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-08 (Fri, 08 Mar 2024)
Changed paths:
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.h
Log Message:
-----------
handle mismatching number of scans by truncating the last overlap portion
Commit: 1c9ed668b8611fb2db7f417964ab19f573b7186e
https://github.com/ehb54/ultrascan3/commit/1c9ed668b8611fb2db7f417964ab19f573b7186e
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-08 (Fri, 08 Mar 2024)
Changed paths:
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.h
Log Message:
-----------
add ccw selection to the saving procedure, fixed the issue when the buffer and data radial points don't match
Commit: 5c70eae2b5089fe59f61e5e4fe46e6a3e8cf5cd3
https://github.com/ehb54/ultrascan3/commit/5c70eae2b5089fe59f61e5e4fe46e6a3e8cf5cd3
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-03-08 (Fri, 08 Mar 2024)
Changed paths:
M doc/manual/footer.us3
M doc/manual/images/us_edit.png
M doc/manual/images/us_edit_mwl.png
Log Message:
-----------
Merge pull request #89 from ehb54/garys-work
Garys work
Commit: 79ae488fa1dd90bfe20e60682599a4dd85653af7
https://github.com/ehb54/ultrascan3/commit/79ae488fa1dd90bfe20e60682599a4dd85653af7
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-03-08 (Fri, 08 Mar 2024)
Changed paths:
M gui/us_csv_loader.cpp
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.h
M programs/us_pseudo_absorbance/us_pabs_common.cpp
M programs/us_pseudo_absorbance/us_pabs_common.h
M programs/us_pseudo_absorbance/us_pseudo_absorbance.pro
M programs/us_pseudo_absorbance/us_remove_ri.cpp
Log Message:
-----------
Merge pull request #88 from samo38/master
add multiple run id handling with us_pseudo_absorbance program
Commit: dfd927a07cc40b82f848134f463e5b5833bcd5dc
https://github.com/ehb54/ultrascan3/commit/dfd927a07cc40b82f848134f463e5b5833bcd5dc
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-08 (Fri, 08 Mar 2024)
Changed paths:
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_pabs_common.cpp
Log Message:
-----------
rundId didn't get cleared as CCW class cleared. fixed!
Commit: 3a8f1910f488b24eb3ce491e832449625eea4687
https://github.com/ehb54/ultrascan3/commit/3a8f1910f488b24eb3ce491e832449625eea4687
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-08 (Fri, 08 Mar 2024)
Changed paths:
M doc/manual/footer.us3
M doc/manual/images/us_edit.png
M doc/manual/images/us_edit_mwl.png
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: 41a13e0c5d454f29b4e87f4754c97ef5fba2ffbc
https://github.com/ehb54/ultrascan3/commit/41a13e0c5d454f29b4e87f4754c97ef5fba2ffbc
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-08 (Fri, 08 Mar 2024)
Changed paths:
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_pabs_common.cpp
M programs/us_pseudo_absorbance/us_pabs_common.h
Log Message:
-----------
typo correction with CCW class
Commit: f41616547b3c2d06cb6f647462e47f9c4d12a4b2
https://github.com/ehb54/ultrascan3/commit/f41616547b3c2d06cb6f647462e47f9c4d12a4b2
Author: ehb54 <brookes at uthscsa.edu>
Date: 2024-03-13 (Wed, 13 Mar 2024)
Changed paths:
M utils/us_geturl.h
Log Message:
-----------
us_geturl.h : fix headers for linux compile
Commit: e16245c1081ead25bbefddaebddb9936eb89360a
https://github.com/ehb54/ultrascan3/commit/e16245c1081ead25bbefddaebddb9936eb89360a
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-13 (Wed, 13 Mar 2024)
Changed paths:
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.h
Log Message:
-----------
Add the last_scan counter; got a few adjustments to the GUI
Commit: 617e1d504e1b6e45fdefa9d7de60e619948ed1ca
https://github.com/ehb54/ultrascan3/commit/617e1d504e1b6e45fdefa9d7de60e619948ed1ca
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-13 (Wed, 13 Mar 2024)
Changed paths:
M utils/us_geturl.h
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: 2388d1422573f79fc588d23f8d9b5791416ef747
https://github.com/ehb54/ultrascan3/commit/2388d1422573f79fc588d23f8d9b5791416ef747
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-03-13 (Wed, 13 Mar 2024)
Changed paths:
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.h
M programs/us_pseudo_absorbance/us_pabs_common.cpp
M programs/us_pseudo_absorbance/us_pabs_common.h
Log Message:
-----------
Merge pull request #93 from samo38/master
pseudo-absorbance program
Commit: 80432f3c8d8dc50a12c750e0e82932ea08f4c641
https://github.com/ehb54/ultrascan3/commit/80432f3c8d8dc50a12c750e0e82932ea08f4c641
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-03-22 (Fri, 22 Mar 2024)
Changed paths:
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
GMP | 2. LIVE_UPDATE -- MORE DEBUG stats [correction to prior commit for]: if network connection to Optima dropped, stop all updates, inform user & return to Optima run Manager...
Commit: 2d94aa0a5d93a3786a98aad59e7dbf5962e4c9ff
https://github.com/ehb54/ultrascan3/commit/2d94aa0a5d93a3786a98aad59e7dbf5962e4c9ff
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-03-25 (Mon, 25 Mar 2024)
Changed paths:
M gui/us_buffer_gui.cpp
M gui/us_buffer_gui.h
Log Message:
-----------
add a slider to check how viscosity and density change over temperature
Commit: 5fb32031227b6c6bc9c2b969d258b5ba8eae320a
https://github.com/ehb54/ultrascan3/commit/5fb32031227b6c6bc9c2b969d258b5ba8eae320a
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-03-26 (Tue, 26 Mar 2024)
Changed paths:
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M utils/us_link_ssl.cpp
Log Message:
-----------
GMP | 2. LIVE_UPDATE -- MORE DEBUG stats 1 [correction to prior commit for]: if network connection to Optima dropped, stop all updates, inform user & return to Optima run Manager...
Commit: d8484447d93185427954c122226120938afdb311
https://github.com/ehb54/ultrascan3/commit/d8484447d93185427954c122226120938afdb311
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-03-27 (Wed, 27 Mar 2024)
Changed paths:
M gui/us_model_gui.cpp
M gui/us_model_gui.h
Log Message:
-----------
Models' managerment -- check if model to be deleted was generated within autolfow framework...
Commit: c442b2549ff7698c069783b121945c57b14cfff6
https://github.com/ehb54/ultrascan3/commit/c442b2549ff7698c069783b121945c57b14cfff6
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-03-27 (Wed, 27 Mar 2024)
Changed paths:
M gui/us_model_gui.cpp
Log Message:
-----------
Models' managerment -- also do not allow to save/update model if GMP-generated...
Commit: f1aa1e64eb70d4b7efc57f491e7ccf028aba073f
https://github.com/ehb54/ultrascan3/commit/f1aa1e64eb70d4b7efc57f491e7ccf028aba073f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-03-27 (Wed, 27 Mar 2024)
Changed paths:
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
GMP | 2. LIVE_UPDATE -- MORE DEBUG stats 2 [correction to prior commit for]: if network connection to Optima dropped, stop all updates, inform user & return to Optima run Manager...
Commit: 8d07df262365802d19ebda64161303e6d05e9dd5
https://github.com/ehb54/ultrascan3/commit/8d07df262365802d19ebda64161303e6d05e9dd5
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-03-28 (Thu, 28 Mar 2024)
Changed paths:
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
GMP | 2. LIVE_UPDATE -- MORE DEBUG stats 3 [correction to prior commit for]: if network connection to Optima dropped, stop all updates, inform user & return to Optima run Manager...
Commit: 5f580dec570690125486c7764c42137951bdc59e
https://github.com/ehb54/ultrascan3/commit/5f580dec570690125486c7764c42137951bdc59e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-03-29 (Fri, 29 Mar 2024)
Changed paths:
M gui/us_associations_gui.cpp
M gui/us_associations_gui.h
M gui/us_model_gui.cpp
M gui/us_model_gui.h
M gui/us_properties.cpp
M gui/us_properties.h
Log Message:
-----------
Models' management -- if the model is required by GMP framework (autoflow-produced 2DSA-IT, -MC, PCSA), preclude deletion or altering; user still can look at component and associations (if any), but will not be able to save them if modified...
Commit: 1409a4d2937109463667bd27c76536e87a3a0667
https://github.com/ehb54/ultrascan3/commit/1409a4d2937109463667bd27c76536e87a3a0667
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-04-02 (Tue, 02 Apr 2024)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
Initial preps for GUI changes in AProfile when expType is 'ABDE'...
Commit: 821c7710ccdddf86fe250b23041ec9760a05fec1
https://github.com/ehb54/ultrascan3/commit/821c7710ccdddf86fe250b23041ec9760a05fec1
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-03 (Wed, 03 Apr 2024)
Changed paths:
M gui/us_associations_gui.cpp
M gui/us_associations_gui.h
M gui/us_model_gui.cpp
M gui/us_model_gui.h
M gui/us_properties.cpp
M gui/us_properties.h
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M utils/us_link_ssl.cpp
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: b873b40dfdc9eda40cd8e81999b43dabab54addb
https://github.com/ehb54/ultrascan3/commit/b873b40dfdc9eda40cd8e81999b43dabab54addb
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-04-03 (Wed, 03 Apr 2024)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
M programs/us_analysis_profile/us_anapro_utils.cpp
M utils/us_ana_profile.cpp
M utils/us_ana_profile.h
Log Message:
-----------
GMP: 1.EXP - working on switch btw SV & ABDE expTypes...
Commit: 020b7bb43188cb3d3ab5497fbceae149eae2ef77
https://github.com/ehb54/ultrascan3/commit/020b7bb43188cb3d3ab5497fbceae149eae2ef77
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-03 (Wed, 03 Apr 2024)
Changed paths:
M programs/us/us.cpp
M programs/us/us_win_data.cpp
Log Message:
-----------
rearranged 'velocity' and 'utilities' menu layout
Commit: fc840046fc43905a365aef737721f232275dce3b
https://github.com/ehb54/ultrascan3/commit/fc840046fc43905a365aef737721f232275dce3b
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-03 (Wed, 03 Apr 2024)
Changed paths:
M programs/us/us_win_data.cpp
A programs/us_legacy_converter/us_legacy_converter.cpp
A programs/us_legacy_converter/us_legacy_converter.h
A programs/us_legacy_converter/us_legacy_converter.pro
Log Message:
-----------
initialized optima file converter
Commit: abcb091535dc6629f74845c10891633c9b3d34fa
https://github.com/ehb54/ultrascan3/commit/abcb091535dc6629f74845c10891633c9b3d34fa
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-05 (Fri, 05 Apr 2024)
Changed paths:
M programs/us/us.cpp
Log Message:
-----------
renew the shortcut keywords in the untilities menu
Commit: 88c3975611e047c59323965bb229cb3a7eba6c5d
https://github.com/ehb54/ultrascan3/commit/88c3975611e047c59323965bb229cb3a7eba6c5d
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-05 (Fri, 05 Apr 2024)
Changed paths:
M utils/us_gzip.cpp
Log Message:
-----------
fixed the issue with making output filenames in the us_gzip.cpp
Commit: d4dd0288b9c2600fcfe03fac7ed9265c38b97e92
https://github.com/ehb54/ultrascan3/commit/d4dd0288b9c2600fcfe03fac7ed9265c38b97e92
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-05 (Fri, 05 Apr 2024)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
Log Message:
-----------
start using us_tar and us_gzip
Commit: a953675999fb8654bd061155535fc0dc7320033a
https://github.com/ehb54/ultrascan3/commit/a953675999fb8654bd061155535fc0dc7320033a
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-05 (Fri, 05 Apr 2024)
Changed paths:
M utils/us_tar.cpp
Log Message:
-----------
save extracted files in the same directory as the archive is in
Commit: a544b9518918a5a366982b598c44570627774959
https://github.com/ehb54/ultrascan3/commit/a544b9518918a5a366982b598c44570627774959
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-05 (Fri, 05 Apr 2024)
Changed paths:
M utils/us_tar.cpp
M utils/us_tar.h
Log Message:
-----------
us_tar: add the output path to the extract method, first check if the tar file has a directory to make it, then start to save the file
Commit: d432f3870ba3af3a639176ffbacf35502766c61e
https://github.com/ehb54/ultrascan3/commit/d432f3870ba3af3a639176ffbacf35502766c61e
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-05 (Fri, 05 Apr 2024)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
Log Message:
-----------
us_legacy_converter: debug the way of using the us_tar
Commit: ae6946a1847f68ab72aa75b4f6c576303e80970c
https://github.com/ehb54/ultrascan3/commit/ae6946a1847f68ab72aa75b4f6c576303e80970c
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-05 (Fri, 05 Apr 2024)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
Log Message:
-----------
us_legacy_converter.cpp: used an iterator to find run types
Commit: 585f734638762929e1ef4dd53a5e8dee18995c19
https://github.com/ehb54/ultrascan3/commit/585f734638762929e1ef4dd53a5e8dee18995c19
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-05 (Fri, 05 Apr 2024)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
Log Message:
-----------
us_legacy_converter.cpp: display the current status of parsing data in the main text widget
Commit: b9726b5fd1d7d75e9e057fd617b783ead571c41c
https://github.com/ehb54/ultrascan3/commit/b9726b5fd1d7d75e9e057fd617b783ead571c41c
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-05 (Fri, 05 Apr 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us csv_loader: add functions to delete multiple rows and columns
Commit: 66907ca4559eb20c3abe4b8c7514cc2159770660
https://github.com/ehb54/ultrascan3/commit/66907ca4559eb20c3abe4b8c7514cc2159770660
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-05 (Fri, 05 Apr 2024)
Changed paths:
M gui/us_csv_loader.cpp
Log Message:
-----------
us_csv_loader: check if all rows of the last column are empty then drop it
Commit: d03af008e14071d78c4e7b21168bb416e3f684fa
https://github.com/ehb54/ultrascan3/commit/d03af008e14071d78c4e7b21168bb416e3f684fa
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-05 (Fri, 05 Apr 2024)
Changed paths:
M programs/us_spectrum/us_spectrum.cpp
Log Message:
-----------
us_spectru: sort data by wavelenghts ascending
Commit: 581a3f40fd6c791d44d3f94918d99c2b736e7466
https://github.com/ehb54/ultrascan3/commit/581a3f40fd6c791d44d3f94918d99c2b736e7466
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-05 (Fri, 05 Apr 2024)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
M programs/us_analysis_profile/us_anapro_utils.cpp
M utils/us_ana_profile.cpp
M utils/us_ana_profile.h
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: 5fb143453b4007e029b763f93e0a692e11ee5ffd
https://github.com/ehb54/ultrascan3/commit/5fb143453b4007e029b763f93e0a692e11ee5ffd
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-05 (Fri, 05 Apr 2024)
Changed paths:
M programs/us/us.cpp
M programs/us/us_win_data.cpp
Log Message:
-----------
us: renamed the Optima data converter under the utilities
Commit: 7dcd59cdcc2f014d9c9d80b9fdecdd36a2f865d3
https://github.com/ehb54/ultrascan3/commit/7dcd59cdcc2f014d9c9d80b9fdecdd36a2f865d3
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-05 (Fri, 05 Apr 2024)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
Log Message:
-----------
us_legacy_converter: rename the window title and the load pushbutton
Commit: a4f0682fae0a22b50e94f2cc76048d3b5ade33fc
https://github.com/ehb54/ultrascan3/commit/a4f0682fae0a22b50e94f2cc76048d3b5ade33fc
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-05 (Fri, 05 Apr 2024)
Changed paths:
R programs/us_cfa_viewer/us_cfa_run.cpp
R programs/us_cfa_viewer/us_cfa_run.h
R programs/us_cfa_viewer/us_cfa_viewer.cpp
R programs/us_cfa_viewer/us_cfa_viewer.h
R programs/us_cfa_viewer/us_cfa_viewer.pro
Log Message:
-----------
removed us_cfa_viewer source code from the program directory. It's removed from the menu bar in a couple of commits ago.
Commit: d66b671d3b87020605ff1b4ec6c6083e91306801
https://github.com/ehb54/ultrascan3/commit/d66b671d3b87020605ff1b4ec6c6083e91306801
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-06 (Sat, 06 Apr 2024)
Changed paths:
M utils/us_tar.cpp
M utils/us_tar.h
Log Message:
-----------
us_tar: replace position of file list with output path so that it is compatible with us_mpi_analysis.cpp
Commit: b31373ecd0473abd00c1454532c63a4d56c2853f
https://github.com/ehb54/ultrascan3/commit/b31373ecd0473abd00c1454532c63a4d56c2853f
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-06 (Sat, 06 Apr 2024)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
Log Message:
-----------
debug us_legacy_converter using US_Tar
Commit: cbf7d75f95f805107411fecfadf131033fc11ff0
https://github.com/ehb54/ultrascan3/commit/cbf7d75f95f805107411fecfadf131033fc11ff0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-04-07 (Sun, 07 Apr 2024)
Changed paths:
M gui/us_report_gui.cpp
M gui/us_report_gui.h
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M utils/us_report_gmp.cpp
M utils/us_report_gmp.h
Log Message:
-----------
GMP: 1.EXP - [progress on] working on switch btw SV & ABDE expTypes...
Commit: f996b4298b9f9f16c735a3a95eeb4870886142a7
https://github.com/ehb54/ultrascan3/commit/f996b4298b9f9f16c735a3a95eeb4870886142a7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-04-07 (Sun, 07 Apr 2024)
Changed paths:
M gui/us_report_gui.cpp
M gui/us_report_gui.h
Log Message:
-----------
GMP: 1.EXP - [progress on] working on switch btw SV & ABDE expTypes: different dynamic initializations of gui/internalts for Report|ReportItems, proper saving in memory for duration of certain type of exptype...
Commit: e36c8eb1a48fca4c0d5069f624317fc5708363e9
https://github.com/ehb54/ultrascan3/commit/e36c8eb1a48fca4c0d5069f624317fc5708363e9
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-04-08 (Mon, 08 Apr 2024)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_experiment/us_proto_ranges.cpp
M utils/us_run_protocol.cpp
M utils/us_run_protocol.h
Log Message:
-----------
GMP: 1.EXP - [progress on] consider option of requiring buffer spectrum for MWL channels in ABDE experiments; dynamic switch btw SV-ABDE exps...
Commit: 0c8e967537b288377b0e0d75e1dbfa19ba30110d
https://github.com/ehb54/ultrascan3/commit/0c8e967537b288377b0e0d75e1dbfa19ba30110d
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-09 (Tue, 09 Apr 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us_csv_loader: renamed CustomTableWidget to CSVTableWidget; introduced CSVTableWidgetItem to sort by numeric and string priorities
Commit: 4c6a2498597e614e326335637da384374ec37de9
https://github.com/ehb54/ultrascan3/commit/4c6a2498597e614e326335637da384374ec37de9
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-09 (Tue, 09 Apr 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us_csv_loader: sort CSVTableWidgetItem only by numeric comparison; added CSVSortFilterProxyModel
Commit: 5024b1d5821f4d8f7bf07d2593ed0ae5f18ed0e6
https://github.com/ehb54/ultrascan3/commit/5024b1d5821f4d8f7bf07d2593ed0ae5f18ed0e6
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-04-09 (Tue, 09 Apr 2024)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_proto_ranges.cpp
Log Message:
-----------
GMP: 1.EXP - [progress on] consider option of requiring buffer spectrum for MWL channels in ABDE experiments; dynamic switch btw SV-ABDE exps...
Commit: 15bf7f5eeb00266c04ea4228cd7faa99fef0b694
https://github.com/ehb54/ultrascan3/commit/15bf7f5eeb00266c04ea4228cd7faa99fef0b694
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-10 (Wed, 10 Apr 2024)
Changed paths:
M programs/us_spectrum/us_spectrum.cpp
Log Message:
-----------
us_spectrum: changed the warning message of the CSV widget
Commit: ec2df4532c52655b94ff69f39a8f5d85c497946c
https://github.com/ehb54/ultrascan3/commit/ec2df4532c52655b94ff69f39a8f5d85c497946c
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-10 (Wed, 10 Apr 2024)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
Log Message:
-----------
us_mwl_species_fit: stated using the US_CSV_Loader
Commit: cc2a7788e991b29cb11d1789e9bbe42ccb5d1e04
https://github.com/ehb54/ultrascan3/commit/cc2a7788e991b29cb11d1789e9bbe42ccb5d1e04
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-10 (Wed, 10 Apr 2024)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
Log Message:
-----------
us_mwl_species_fit: comment out the loadSpecs temporarily
Commit: ec439727abd8504ed0fb9265d0d88749d89b3968
https://github.com/ehb54/ultrascan3/commit/ec439727abd8504ed0fb9265d0d88749d89b3968
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-10 (Wed, 10 Apr 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us_csv_loader: removed options to parse both string and numeric data. All data must be numeric except for the header.
Commit: 49fa634713894db8dac87e449270b2f04efa8d4f
https://github.com/ehb54/ultrascan3/commit/49fa634713894db8dac87e449270b2f04efa8d4f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-04-10 (Wed, 10 Apr 2024)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP: 1.EXP - sanity check for existence of valid extinction profiles for MWL-channels in ABDE experiments: all analytes, all buffers (optionally)...
Commit: 0caa231c1a97ad1476fb304b5fce103b18364d09
https://github.com/ehb54/ultrascan3/commit/0caa231c1a97ad1476fb304b5fce103b18364d09
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-10 (Wed, 10 Apr 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us_csv_loader: replace QTableWidget with QTableView, used SortFilterProxyModel to exclude the first from sorting and sorting with priority of numbers
Commit: f821c7c247a198e282ec4dc3f98cd9d2b4becb59
https://github.com/ehb54/ultrascan3/commit/f821c7c247a198e282ec4dc3f98cd9d2b4becb59
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-11 (Thu, 11 Apr 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
gui/us_csv_loader: added boolian data to item as UserRole. removed check_table_size(), check_table_data() and highlight_header() and combine them into check_table()
Commit: 308d918c039f661feb87f35e9716c29375bf6789
https://github.com/ehb54/ultrascan3/commit/308d918c039f661feb87f35e9716c29375bf6789
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-11 (Thu, 11 Apr 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
gui/us_csv_loader: replace set_msg with setMessage, get_data() and get_header() with data(), get_file_info() with dataFileInfo(); deleted data, header, and hlabel vectors
Commit: e6d8ce1bd9b91578c48894c6c6d8a03d7e2f614b
https://github.com/ehb54/ultrascan3/commit/e6d8ce1bd9b91578c48894c6c6d8a03d7e2f614b
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-11 (Thu, 11 Apr 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us_csv_loader: added get_sorted() to get sorted the table by column and write_csv() to write the table into a csv file
Commit: 6ccc4c64a07deab290737e1f4a8817830ad122be
https://github.com/ehb54/ultrascan3/commit/6ccc4c64a07deab290737e1f4a8817830ad122be
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-11 (Thu, 11 Apr 2024)
Changed paths:
M gui/us_csv_loader.cpp
Log Message:
-----------
gui/us_csv_loader.cpp: edit delete_rows and delete_columns functions campatible with QTableView
Commit: a0093064741ac632dcebf59cae4bf0e11876d431
https://github.com/ehb54/ultrascan3/commit/a0093064741ac632dcebf59cae4bf0e11876d431
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-11 (Thu, 11 Apr 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us_csv_loader: change the CSVTableView signal to row_column_deleted; add setEditable(bool), reset(), item_changed(QStandardItem *), relabel(), and row_column_deleted()
Commit: 233c69857b23b2958f5144aca77ecfbcbf813d04
https://github.com/ehb54/ultrascan3/commit/233c69857b23b2958f5144aca77ecfbcbf813d04
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-04-11 (Thu, 11 Apr 2024)
Changed paths:
M gui/us_report_gui.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_experiment/us_exp_utils.cpp
Log Message:
-----------
GMP: 1.EXP - all-wvls-check in extinciton profiles is added to sanity check form MWL-ABDE; a bug fixed when initiating ABDE-type experiment from scratch...
Commit: 758c8ed7f8b3f5a6ea880ab0143a7f626080185f
https://github.com/ehb54/ultrascan3/commit/758c8ed7f8b3f5a6ea880ab0143a7f626080185f
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-12 (Fri, 12 Apr 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us_csv_loader: add a pushbutton to show bad data flagged by red background
Commit: ebd0016216a66e10ff9ff49f06196b12f400108f
https://github.com/ehb54/ultrascan3/commit/ebd0016216a66e10ff9ff49f06196b12f400108f
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-12 (Fri, 12 Apr 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us_csv_loader: introduced CSV_Data class to handle the output data
Commit: e9f5e3397e93d669ad6f11ba3f083f27472d07ff
https://github.com/ehb54/ultrascan3/commit/e9f5e3397e93d669ad6f11ba3f083f27472d07ff
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-12 (Fri, 12 Apr 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us_csv_loader: remove US_CSV_Loader::dataFileInfo and moved the csv filepath to US_CSV_Loader::CSV_Data; add filePath() and clear() data to CSV_Data; debug US_CSV_Loader:CSV_Data:setData; debug US_CSV_Loader::data()
Commit: c98698cac31dd1ebf90f1e8915914ec842bf260b
https://github.com/ehb54/ultrascan3/commit/c98698cac31dd1ebf90f1e8915914ec842bf260b
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-12 (Fri, 12 Apr 2024)
Changed paths:
M gui/us_extinction_gui.cpp
M gui/us_extinction_gui.h
Log Message:
-----------
gui/us_extinction_gui: update loadScan() to use the US_CSV_Loader::CSV_Data
Commit: 6776a7f809f0c9e64a62a4e7a6bb5544b8d8ccb0
https://github.com/ehb54/ultrascan3/commit/6776a7f809f0c9e64a62a4e7a6bb5544b8d8ccb0
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-12 (Fri, 12 Apr 2024)
Changed paths:
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
Log Message:
-----------
s_spectrum/us_spectrum: update it to use the US_CSV_Loader::CSV_Data
Commit: db8c2f78299101d6bae3b7924f9277f10a495cb1
https://github.com/ehb54/ultrascan3/commit/db8c2f78299101d6bae3b7924f9277f10a495cb1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-04-12 (Fri, 12 Apr 2024)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
Log Message:
-----------
GMP: 1.EXP::5.Solutions - a bug causing crash fixed regarding changing #channels with solutions after initail initialization ...
Commit: 983999c090c884bfc887a336df13d0620815d5d0
https://github.com/ehb54/ultrascan3/commit/983999c090c884bfc887a336df13d0620815d5d0
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-12 (Fri, 12 Apr 2024)
Changed paths:
M gui/us_extinction_gui.cpp
Log Message:
-----------
us_extinction_gui.cpp: edit the message set in US_CSV_Loader; removed redundant QFileInfo variable
Commit: feb54319f710311b9796615932846dfd9de71b21
https://github.com/ehb54/ultrascan3/commit/feb54319f710311b9796615932846dfd9de71b21
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-12 (Fri, 12 Apr 2024)
Changed paths:
M gui/us_csv_loader.cpp
Log Message:
-----------
us_csv_loader.cpp: change the layout, debug the crash dump of the program when the reset button is pressed while no data imported yet, set the header resizing mode to ResizeToContents
Commit: 3f7b25b7e7110292b412d2770756f2c12734b2ec
https://github.com/ehb54/ultrascan3/commit/3f7b25b7e7110292b412d2770756f2c12734b2ec
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-12 (Fri, 12 Apr 2024)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
Log Message:
-----------
us_mwl_species_fit.cpp: used US_CSV_Loader in the loadSpecs() function to import the species profiles
Commit: b81740f02e0bd51ced1ecd7fd417141d78e53019
https://github.com/ehb54/ultrascan3/commit/b81740f02e0bd51ced1ecd7fd417141d78e53019
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-04-15 (Mon, 15 Apr 2024)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M utils/us_ana_profile.cpp
M utils/us_run_protocol.cpp
Log Message:
-----------
GMP: 1.EXP-> SV vs. ABDE: top-level params in prot/aprofile's XML...
Commit: 0b94782db4808d23d7902f2f39deea0bab0765fa
https://github.com/ehb54/ultrascan3/commit/0b94782db4808d23d7902f2f39deea0bab0765fa
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-04-16 (Tue, 16 Apr 2024)
Changed paths:
M gui/us_report_gui.cpp
M gui/us_report_gui.h
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP: 1.EXP-> SV vs. ABDE: fixed introduced bug for conventional SV experiments.; testing wtite/read to/from DB for ABDE types...
Commit: 7d8206adb48de7d8569896493e2fbf9ebbc10d84
https://github.com/ehb54/ultrascan3/commit/7d8206adb48de7d8569896493e2fbf9ebbc10d84
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-04-16 (Tue, 16 Apr 2024)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
Log Message:
-----------
GMP: 1.EXP-> SV vs. ABDE: TEST...
Commit: 3687a37a4aee2d5b2353b1cfd4fde4c9292d874f
https://github.com/ehb54/ultrascan3/commit/3687a37a4aee2d5b2353b1cfd4fde4c9292d874f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-04-16 (Tue, 16 Apr 2024)
Changed paths:
M programs/us_analysis_profile/us_anapro_utils.cpp
Log Message:
-----------
GMP: 1.EXP-> SV vs. ABDE: bug fixed as to creation ABDE exp. from scratch; ...
Commit: 5e058d6041c7ef0e257c071c5b82034f11d06d5a
https://github.com/ehb54/ultrascan3/commit/5e058d6041c7ef0e257c071c5b82034f11d06d5a
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-04-16 (Tue, 16 Apr 2024)
Changed paths:
M gui/us_buffer_gui.cpp
M gui/us_buffer_gui.h
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
M gui/us_extinction_gui.cpp
M gui/us_extinction_gui.h
M programs/us/us.cpp
M programs/us/us_win_data.cpp
R programs/us_cfa_viewer/us_cfa_run.cpp
R programs/us_cfa_viewer/us_cfa_run.h
R programs/us_cfa_viewer/us_cfa_viewer.cpp
R programs/us_cfa_viewer/us_cfa_viewer.h
R programs/us_cfa_viewer/us_cfa_viewer.pro
A programs/us_legacy_converter/us_legacy_converter.cpp
A programs/us_legacy_converter/us_legacy_converter.h
A programs/us_legacy_converter/us_legacy_converter.pro
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
M utils/us_gzip.cpp
M utils/us_tar.cpp
M utils/us_tar.h
Log Message:
-----------
Merge pull request #95 from samo38/master
rearrange US menus; add optima data converter; delete us_cfa_viewer
Commit: 6c6d0a083078b02e8d0d873484a245dd361a398b
https://github.com/ehb54/ultrascan3/commit/6c6d0a083078b02e8d0d873484a245dd361a398b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-04-17 (Wed, 17 Apr 2024)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP: 1.EXP: MWL-ABDE: bug fixed ; ...
Commit: 586da1469ac12094bb50d9f3ecedd24dbf4d97ce
https://github.com/ehb54/ultrascan3/commit/586da1469ac12094bb50d9f3ecedd24dbf4d97ce
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-04-17 (Wed, 17 Apr 2024)
Changed paths:
M utils/us_xpn_data.cpp
Log Message:
-----------
GMP: 2. LIVE_UPDATE=> dropped/lost Connection to Optima: more debug stats added for tests ...
Commit: 582a1e07c97b2444167143fadfe8ea6598dd5e38
https://github.com/ehb54/ultrascan3/commit/582a1e07c97b2444167143fadfe8ea6598dd5e38
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-04-17 (Wed, 17 Apr 2024)
Changed paths:
M utils/us_xpn_data.cpp
Log Message:
-----------
GMP: 2. LIVE_UPDATE [2] => dropped/lost Connection to Optima: more debug stats added for tests ...
Commit: ed0c941398baae5674c1a4a0895f89519965b9b9
https://github.com/ehb54/ultrascan3/commit/ed0c941398baae5674c1a4a0895f89519965b9b9
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-04-18 (Thu, 18 Apr 2024)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
M utils/us_run_protocol.cpp
Log Message:
-----------
GMP: 1.EXP: MWL-ABDE: a minor bug fixed as to initiating correct state of 'buffer spectra required' when read from DB (prev. saved) for MWL-ABDE exp. ...
Commit: 18342c056398fab4318c0167cc452db12e0600b1
https://github.com/ehb54/ultrascan3/commit/18342c056398fab4318c0167cc452db12e0600b1
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-19 (Fri, 19 Apr 2024)
Changed paths:
M gui/us_csv_loader.cpp
Log Message:
-----------
us_csv_loader: let the widget maximize
Commit: c2aaa716bae0c58d819c896e3f792d8c18be680c
https://github.com/ehb54/ultrascan3/commit/c2aaa716bae0c58d819c896e3f792d8c18be680c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-04-19 (Fri, 19 Apr 2024)
Changed paths:
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_experiment/us_exp_utils.cpp
Log Message:
-----------
GMP: 1.EXP: ABDE: another bug fixed to enable the following situation: based on existing ABDE setup (either uploaded from DB or created from scratch manually), user can go back and change: (1) #channels; and/or (2) #wavelength for each channel; and/or (3) substitute existing wvls.. This will result in the correct re-initialization of the report|reportItem of the AProfile for [single | MWL] ABDE rotocol...
Commit: ef5ac5d194a9ac04596b656bf9cd42c8a10fc980
https://github.com/ehb54/ultrascan3/commit/ef5ac5d194a9ac04596b656bf9cd42c8a10fc980
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-04-19 (Fri, 19 Apr 2024)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
Log Message:
-----------
GMP: 1.EXP: AProfile: display 'Excluded Scans' settigns for SV-type and hide for ABDE ...
Commit: 8591a5036f65d062ee870d8df866b51037935715
https://github.com/ehb54/ultrascan3/commit/8591a5036f65d062ee870d8df866b51037935715
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-04-19 (Fri, 19 Apr 2024)
Changed paths:
M gui/us_report_general_gui.cpp
M gui/us_report_general_gui.h
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP: 1.EXP: AProfile: General Report Sttings -- hide 2DSA & PCSA protocol settings for ABDE type experiment, not disrupting overall Aprofile structure...
Commit: 17bbe4384e0627f28f2e209f191be4125f094de4
https://github.com/ehb54/ultrascan3/commit/17bbe4384e0627f28f2e209f191be4125f094de4
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-22 (Mon, 22 Apr 2024)
Changed paths:
M gui/us_csv_loader.cpp
Log Message:
-----------
us_csv_loader: new layout
Commit: 6247acd5e7124c4c9821421291b57e8f601e8797
https://github.com/ehb54/ultrascan3/commit/6247acd5e7124c4c9821421291b57e8f601e8797
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-04-24 (Wed, 24 Apr 2024)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
M programs/us_analysis_profile/us_anapro_utils.cpp
M utils/us_ana_profile.cpp
M utils/us_ana_profile.h
Log Message:
-----------
GMP: 1.EXP: AProfile: General => settings for ref channels|use ref channels -- dynamic GUI set for those, incl. read/write to/from DB....
Commit: 0a60a5348b8a75b1e1dd014466d20b3e6a5b4568
https://github.com/ehb54/ultrascan3/commit/0a60a5348b8a75b1e1dd014466d20b3e6a5b4568
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-04-25 (Thu, 25 Apr 2024)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
Log Message:
-----------
[bug fixed for -- ] GMP: 1.EXP: AProfile: General => settings for ref channels|use ref channels -- dynamic GUI set for those, incl. read/write to/from DB....
Commit: f1f237f0f5bff3221468c278694e0e1d13246abf
https://github.com/ehb54/ultrascan3/commit/f1f237f0f5bff3221468c278694e0e1d13246abf
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-04-25 (Thu, 25 Apr 2024)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
Log Message:
-----------
[bug #2 fixed for -- ] GMP: 1.EXP: AProfile: General => settings for ref channels|use ref channels -- dynamic GUI set for those, incl. read/write to/from DB....
Commit: 2351dacbaa64259d740a099ab5d194660b4efc7e
https://github.com/ehb54/ultrascan3/commit/2351dacbaa64259d740a099ab5d194660b4efc7e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-04-25 (Thu, 25 Apr 2024)
Changed paths:
M gui/us_select_item.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_edit/us_edit.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | R&D: add marker for experiemnt type {'Velocity','ABDE'} for proper stage re-attachemnet ....
Commit: 6683c2fdd9ce2ed95db33f7c2f74149bf9a9b3bf
https://github.com/ehb54/ultrascan3/commit/6683c2fdd9ce2ed95db33f7c2f74149bf9a9b3bf
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-04-25 (Thu, 25 Apr 2024)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP | R&D #1: add marker for experiemnt type {'Velocity','ABDE'} for proper stage re-attachemnet ....
Commit: 76aea5edb69541ae92e54d1b647264fd2756a77f
https://github.com/ehb54/ultrascan3/commit/76aea5edb69541ae92e54d1b647264fd2756a77f
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-04-25 (Thu, 25 Apr 2024)
Changed paths:
M gui/us_csv_loader.h
Log Message:
-----------
Update us_csv_loader.h
Add US_GUI_EXTERN for windows build
Commit: d96b46a6cfab38043d2a51d8980073fa4c2f6f56
https://github.com/ehb54/ultrascan3/commit/d96b46a6cfab38043d2a51d8980073fa4c2f6f56
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-04-26 (Fri, 26 Apr 2024)
Changed paths:
M gui/us_csv_loader.h
Log Message:
-----------
Merge pull request #96 from ehb54/ehb54-patch-2
Update us_csv_loader.h
Commit: 042784744546733eca065832afc8bfe20bc4a2a0
https://github.com/ehb54/ultrascan3/commit/042784744546733eca065832afc8bfe20bc4a2a0
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-27 (Sat, 27 Apr 2024)
Changed paths:
M gui/us_csv_loader.h
M gui/us_report_general_gui.cpp
M gui/us_report_general_gui.h
M gui/us_report_gui.cpp
M gui/us_report_gui.h
M gui/us_select_item.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_edit/us_edit.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_experiment/us_proto_ranges.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M utils/us_ana_profile.cpp
M utils/us_ana_profile.h
M utils/us_report_gmp.cpp
M utils/us_report_gmp.h
M utils/us_run_protocol.cpp
M utils/us_run_protocol.h
M utils/us_xpn_data.cpp
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: c17fa94b105eeceb6e0c97c48779c6a195ccf45d
https://github.com/ehb54/ultrascan3/commit/c17fa94b105eeceb6e0c97c48779c6a195ccf45d
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-29 (Mon, 29 Apr 2024)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
Log Message:
-----------
us_legacy_converter: add extract_files to handle the file extraction. The priority is to use the tar system program. In case of not finding it, the code is startig to use US_Gzip and US_Tar programs.
Commit: 6dd3a7bfa882a925e1be0a98fe5d232099a145ba
https://github.com/ehb54/ultrascan3/commit/6dd3a7bfa882a925e1be0a98fe5d232099a145ba
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-29 (Mon, 29 Apr 2024)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
Log Message:
-----------
us_legacy_converter: fixed the issue of not setting the run id after it read the tar.gz correctly.
Commit: ca885a9e2cd314d8ebd0b5bbbfe613c0029f50d1
https://github.com/ehb54/ultrascan3/commit/ca885a9e2cd314d8ebd0b5bbbfe613c0029f50d1
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-29 (Mon, 29 Apr 2024)
Changed paths:
M programs/us/us.cpp
Log Message:
-----------
us.cpp: move the Query Model RMSDs program under the velocity menu
Commit: a07f53e13c639ba34b6213509048c6eb425b85fd
https://github.com/ehb54/ultrascan3/commit/a07f53e13c639ba34b6213509048c6eb425b85fd
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-30 (Tue, 30 Apr 2024)
Changed paths:
M gui/us_csv_loader.cpp
Log Message:
-----------
us_csv_loader.cpp: add a stylesheet to the table scrollbar
Commit: 7c89c2069535a50813c8e0b0725617e93fe0a9b3
https://github.com/ehb54/ultrascan3/commit/7c89c2069535a50813c8e0b0725617e93fe0a9b3
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-30 (Tue, 30 Apr 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
gui/us_csv_loader: removed the open push button, renew the layout
Commit: c357ac51eee3301ea41991790fd67abac282d2e8
https://github.com/ehb54/ultrascan3/commit/c357ac51eee3301ea41991790fd67abac282d2e8
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-30 (Tue, 30 Apr 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
gui/us_csv_loader: deleted set_filepath, setMessage, setEditable methods from public class. added the file path, note text, editing status to the costructor. added error_message method to the public class to see any error of file processing. added set_UI to call when the constructor finds that the input file is in text fromat. If not it closes with the code return -2
Commit: 2158cea187953ef03cf021cac55c1ea3398d9738
https://github.com/ehb54/ultrascan3/commit/2158cea187953ef03cf021cac55c1ea3398d9738
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-30 (Tue, 30 Apr 2024)
Changed paths:
M gui/us_csv_loader.cpp
Log Message:
-----------
gui/us_csv_loader: set the file info in the constructor
Commit: f6142c9b76309d4c528e16944faff5568e8548d5
https://github.com/ehb54/ultrascan3/commit/f6142c9b76309d4c528e16944faff5568e8548d5
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-30 (Tue, 30 Apr 2024)
Changed paths:
M gui/us_extinction_gui.cpp
M programs/us_spectrum/us_spectrum.cpp
Log Message:
-----------
edit the gui/us_extinction_gui.cpp and us_spectrum/us_spectrum.cpp programs in order to use the newer version of the us_csv_loader
Commit: 6ef739129ac10a0c68386e872986eb76d35d15a0
https://github.com/ehb54/ultrascan3/commit/6ef739129ac10a0c68386e872986eb76d35d15a0
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-04-30 (Tue, 30 Apr 2024)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
Log Message:
-----------
us_mwl_species_fit.cpp: fixed it to used the new version of the csv loader widget
Commit: 6f79a7dc5694207f9207fee28273138345560628
https://github.com/ehb54/ultrascan3/commit/6f79a7dc5694207f9207fee28273138345560628
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-05-01 (Wed, 01 May 2024)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
M programs/us_analysis_profile/us_anapro_utils.cpp
Log Message:
-----------
GMP :1.EXP-> ABDE: progress on a more automated & dynamic GUI to define ref. buffers / use ref. buffers in the AProfile....
Commit: a749471870fe10cc3cfecb4133c37ec050f3bee9
https://github.com/ehb54/ultrascan3/commit/a749471870fe10cc3cfecb4133c37ec050f3bee9
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-05-01 (Wed, 01 May 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
M gui/us_extinction_gui.cpp
M programs/us/us.cpp
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_spectrum/us_spectrum.cpp
Log Message:
-----------
Merge pull request #97 from samo38/master
address the issue with using the US_Tar in MS Windows. Used tar.exe instead
Commit: 6e2bde27dc051bfbd048614a5a5359e802052ea6
https://github.com/ehb54/ultrascan3/commit/6e2bde27dc051bfbd048614a5a5359e802052ea6
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-05-01 (Wed, 01 May 2024)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
Log Message:
-----------
us_legacy_converter: add a new method to handle the output directory. Users can select any folder. It is compatible with the MS windows too.
Commit: a1a4a88c4f84b62b3a98f577559af116e9c3b4b0
https://github.com/ehb54/ultrascan3/commit/a1a4a88c4f84b62b3a98f577559af116e9c3b4b0
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-05-01 (Wed, 01 May 2024)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
M programs/us_analysis_profile/us_anapro_utils.cpp
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: 1ecbc6d78dac23fede8ea3eb8e781b6f897ba2d2
https://github.com/ehb54/ultrascan3/commit/1ecbc6d78dac23fede8ea3eb8e781b6f897ba2d2
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-05-01 (Wed, 01 May 2024)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
Log Message:
-----------
us_legacy_converter: removed the functions that make users able to choose the output directory. The imports directory is used and if for any reason it doesn't exist, a warning message pops up.
Commit: 848b3b6602d8cb7e89edeee428061485174632f9
https://github.com/ehb54/ultrascan3/commit/848b3b6602d8cb7e89edeee428061485174632f9
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-05-01 (Wed, 01 May 2024)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP :1.EXP-> ABDE: [implementaion complete for ] a more automated & dynamic GUI to define ref. buffers / use ref. buffers in the AProfile; sanity check for refs/use refs setup at the time of submission....
Commit: 568e1ae29235ce12ddcfb5a425be45f406b8242e
https://github.com/ehb54/ultrascan3/commit/568e1ae29235ce12ddcfb5a425be45f406b8242e
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-05-02 (Thu, 02 May 2024)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
Log Message:
-----------
Merge pull request #98 from samo38/master
beckman converter program
Commit: 55d980c0a1560d0c0684353853af2a95840abec3
https://github.com/ehb54/ultrascan3/commit/55d980c0a1560d0c0684353853af2a95840abec3
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-05-02 (Thu, 02 May 2024)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
Log Message:
-----------
us_legacy_converter: make the imports path in case that it isn't found
Commit: 9e63aa3e7e600e6b61d41a0db87a6f7701d9c5fb
https://github.com/ehb54/ultrascan3/commit/9e63aa3e7e600e6b61d41a0db87a6f7701d9c5fb
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-05-02 (Thu, 02 May 2024)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
Log Message:
-----------
Merge pull request #99 from samo38/master
us_legacy_converter: make the imports path in case that it isn't found
Commit: bd06c9bb017ed03793b4f3466ca63036c71155cf
https://github.com/ehb54/ultrascan3/commit/bd06c9bb017ed03793b4f3466ca63036c71155cf
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-05-03 (Fri, 03 May 2024)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
Log Message:
-----------
GMP : 3. IMPORT-> ABDE: test case added, plus capture info on reference channs/use ref. channs from AProfile for ABDE data...
Commit: 4ea8497bb727d67b75735807288ee68e8168d3ef
https://github.com/ehb54/ultrascan3/commit/4ea8497bb727d67b75735807288ee68e8168d3ef
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2024-05-09 (Thu, 09 May 2024)
Changed paths:
M .github/workflows/codeql-analysis.yml
M README.md
M admin/release/ubuntu/Dockerfile
A admin/release/ubuntu_qt6/Dockerfile
M doc/manual/footer.us3
M doc/manual/images/us_edit.png
M doc/manual/images/us_edit_mwl.png
M etc/bufferComponents.xml
M gui/libus_gui.pro
M gui/us_analyte_gui.cpp
M gui/us_associations_gui.cpp
M gui/us_associations_gui.h
M gui/us_buffer_gui.cpp
M gui/us_buffer_gui.h
A gui/us_csv_loader.cpp
A gui/us_csv_loader.h
M gui/us_extinction_gui.cpp
M gui/us_extinction_gui.h
M gui/us_model_gui.cpp
M gui/us_model_gui.h
M gui/us_passwd.cpp
M gui/us_passwd.h
M gui/us_plot.cpp
M gui/us_plot.h
M gui/us_properties.cpp
M gui/us_properties.h
M gui/us_report_general_gui.cpp
M gui/us_report_general_gui.h
M gui/us_report_gui.cpp
M gui/us_report_gui.h
M gui/us_select_item.cpp
M gui/us_solution_gui.cpp
M gui/us_tmst_plot.cpp
M gui/us_tmst_plot.h
M programs/us/us.cpp
M programs/us/us.h
M programs/us/us_win_data.cpp
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
M programs/us_analysis_profile/us_anapro_utils.cpp
A programs/us_assign_reviewers_gmp/us_assign_reviewers_gmp.pro
A programs/us_assign_reviewers_gmp/us_assign_reviewers_gmp_main.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
A programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
A programs/us_audit_trail_gmp/us_audit_trail_gmp.h
A programs/us_audit_trail_gmp/us_audit_trail_gmp.pro
A programs/us_audit_trail_gmp/us_audit_trail_gmp_main.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
R programs/us_cfa_viewer/us_cfa_run.cpp
R programs/us_cfa_viewer/us_cfa_run.h
R programs/us_cfa_viewer/us_cfa_viewer.cpp
R programs/us_cfa_viewer/us_cfa_viewer.h
R programs/us_cfa_viewer/us_cfa_viewer.pro
M programs/us_com_project/us_com_project.pro
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_com_project_academic/us_com_project_academic.pro
M programs/us_config/us_newxpnhost_db.cpp
M programs/us_config/us_xpnhost.cpp
M programs/us_config/us_xpnhost_db.cpp
M programs/us_convert/us_convert.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_convert/us_experiment.h
M programs/us_convert/us_get_run.cpp
M programs/us_convert/us_get_run.h
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
A programs/us_esigner_gmp/us_esigner_gmp.cpp
A programs/us_esigner_gmp/us_esigner_gmp.h
A programs/us_esigner_gmp/us_esigner_gmp.pro
A programs/us_esigner_gmp/us_esigner_gmp_main.cpp
A programs/us_esigner_gmp_aux/us_esigner_gmp.pro
A programs/us_esigner_gmp_aux/us_esigner_gmp_main.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment.pro
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_experiment/us_proto_ranges.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_fematch/us_fematch.h
A programs/us_legacy_converter/us_legacy_converter.cpp
A programs/us_legacy_converter/us_legacy_converter.h
A programs/us_legacy_converter/us_legacy_converter.pro
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_protocol_dev/us_protocol_dev.pro
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
M programs/us_pseudo_absorbance/us_add_refScan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.h
M programs/us_pseudo_absorbance/us_pabs_common.cpp
M programs/us_pseudo_absorbance/us_pabs_common.h
M programs/us_pseudo_absorbance/us_pseudo_absorbance.pro
M programs/us_pseudo_absorbance/us_remove_ri.cpp
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_query_rmsd/us_query_rmsd.h
M programs/us_query_rmsd/us_query_rmsd.pro
A programs/us_reassign_reviewers_gmp/us_reassign_reviewers_gmp.pro
A programs/us_reassign_reviewers_gmp/us_reassign_reviewers_gmp_main.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_reporter_gmp/us_reporter_gmp_main.cpp
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M us_somo/develop/include/us_hydrodyn_addresidue.h
M us_somo/develop/src/us_hydrodyn_addresidue.cpp
M us_somo/develop/src/us_hydrodyn_asab1.cpp
M us_somo/develop/src/us_hydrodyn_load.cpp
M us_somo/develop/src/us_hydrodyn_save.cpp
M us_somo/develop/src/us_hydrodyn_supc.cpp
M us_somo/develop/src/us_saxs_util_asab1.cpp
M us_somo/develop/src/us_saxs_util_hydro_supc_hydro.cpp
M us_somo/etc/somo.atom.new
M us_somo/etc/somo.hybrid.new
M us_somo/etc/somo.residue.new
M utils/libus_utils.pro
M utils/us_ana_profile.cpp
M utils/us_ana_profile.h
M utils/us_constants.h
M utils/us_db2.cpp
A utils/us_geturl.cpp
A utils/us_geturl.h
M utils/us_gzip.cpp
M utils/us_link_ssl.cpp
M utils/us_math2.cpp
M utils/us_math2.h
M utils/us_report_gmp.cpp
M utils/us_report_gmp.h
M utils/us_run_protocol.cpp
M utils/us_run_protocol.h
M utils/us_tar.cpp
M utils/us_tar.h
M utils/us_xpn_data.cpp
Log Message:
-----------
Merge pull request #100 from ehb54/master
Merge master to demeler-dev
Compare: https://github.com/ehb54/ultrascan3/compare/96a347e95c94...4ea8497bb727
To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications
More information about the us-commits
mailing list