[us-commits] [ehb54/ultrascan3] ab214d: Fix: Calculate correct offset for omega2t if adjus...

[Lukas Dobler]

  Branch: refs/heads/master
  Home:   https://github.com/ehb54/ultrascan3
  Commit: ab214dd8d0450512ee7b023f6d0658ea7c3568cc
      https://github.com/ehb54/ultrascan3/commit/ab214dd8d0450512ee7b023f6d0658ea7c3568cc
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2024-10-04 (Fri, 04 Oct 2024)

  Changed paths:
    M programs/us_convert/us_convert.cpp

  Log Message:
  -----------
  Fix: Calculate correct offset for omega2t if adjusting acceleration rate


  Commit: f08190c87108b43ff808cb692561c005f2106615
      https://github.com/ehb54/ultrascan3/commit/f08190c87108b43ff808cb692561c005f2106615
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2024-10-04 (Fri, 04 Oct 2024)

  Changed paths:
    M utils/us_simparms.cpp

  Log Message:
  -----------
  Fix: Calculate proper SimulationSpeedProfile for one timestep acceleration phases


  Commit: 4906d21165b0ae14f6c4028282f0edbb06dd07a9
      https://github.com/ehb54/ultrascan3/commit/4906d21165b0ae14f6c4028282f0edbb06dd07a9
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2024-10-17 (Thu, 17 Oct 2024)

  Changed paths:
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_fematch/us_fematch.cpp
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M utils/us_simparms.cpp

  Log Message:
  -----------
  Prevent corrupted speed steps causing division by zero crash

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: a7ff71ce24dcd590778b2675c593cdefd4a6ae1b
      https://github.com/ehb54/ultrascan3/commit/a7ff71ce24dcd590778b2675c593cdefd4a6ae1b
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2024-10-17 (Thu, 17 Oct 2024)

  Changed paths:
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_fematch/us_fematch.cpp
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  Formatting

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 37a62fa88fbda5ae7bd77f4d701a05f1df1dc9e9
      https://github.com/ehb54/ultrascan3/commit/37a62fa88fbda5ae7bd77f4d701a05f1df1dc9e9
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2024-10-17 (Thu, 17 Oct 2024)

  Changed paths:
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  Remove fix because unsure if needed, added compiler warning for someone to check

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: ebc3daaf9a59720faa1cf03861562a18feecd64b
      https://github.com/ehb54/ultrascan3/commit/ebc3daaf9a59720faa1cf03861562a18feecd64b
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2024-10-21 (Mon, 21 Oct 2024)

  Changed paths:
    M programs/us_mpi_analysis/us_mpi_analysis.cpp

  Log Message:
  -----------
  Add low_acceleration check output to us_mpi_analysis for consistency

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: ac611e47ae70fdd3471d67dae5d4e1b7d82263c3
      https://github.com/ehb54/ultrascan3/commit/ac611e47ae70fdd3471d67dae5d4e1b7d82263c3
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2024-10-21 (Mon, 21 Oct 2024)

  Changed paths:
    M programs/us_mpi_analysis/us_mpi_analysis.cpp

  Log Message:
  -----------
  Fix accessing simparams for dset

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 014528cf370e7904c6ae1ce11e555aebf393357a
      https://github.com/ehb54/ultrascan3/commit/014528cf370e7904c6ae1ce11e555aebf393357a
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2024-10-21 (Mon, 21 Oct 2024)

  Changed paths:
    M .github/workflows/codeql-analysis.yml

  Log Message:
  -----------
  Add safe directory command to analyze-mpi action workflow

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: b0cf8f1efbd20ca56fe6981d6cd49855ace930f5
      https://github.com/ehb54/ultrascan3/commit/b0cf8f1efbd20ca56fe6981d6cd49855ace930f5
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2024-11-11 (Mon, 11 Nov 2024)

  Changed paths:
    M .github/workflows/codeql-analysis.yml
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_convert/us_convert.cpp
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_fematch/us_fematch.cpp
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M utils/us_simparms.cpp

  Log Message:
  -----------
  Merge pull request #138 from ehb54/Lukas-low-speed-convert

low acceleration rate conversion


Compare: https://github.com/ehb54/ultrascan3/compare/2aff6a0cd8dc...b0cf8f1efbd2

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