[us-commits] [ehb54/ultrascan3] fb85cb: Added CFF Citation file

alexsav815 noreply at github.com
Thu Apr 3 09:39:47 MDT 2025


  Branch: refs/heads/alexey-dev-issue425
  Home:   https://github.com/ehb54/ultrascan3
  Commit: fb85cbc41bfb5e7519c6b2889d75248e9a9667cd
      https://github.com/ehb54/ultrascan3/commit/fb85cbc41bfb5e7519c6b2889d75248e9a9667cd
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2024-05-22 (Wed, 22 May 2024)

  Changed paths:
    A CITATION.cff

  Log Message:
  -----------
  Added CFF Citation file

Addresses ticket #82  https://github.com/ehb54/ultrascan-tickets/issues/82


  Commit: b4d84a57f6f7daf44419eeb5c5436c42a3ea1aad
      https://github.com/ehb54/ultrascan3/commit/b4d84a57f6f7daf44419eeb5c5436c42a3ea1aad
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-01-21 (Tue, 21 Jan 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP | 6. REPORTING -- bug fixed for processing individual C(s) ditributions for PCSA models...


  Commit: 339cdfb9969efcc849a4bad7b24a1a9d19f4deac
      https://github.com/ehb54/ultrascan3/commit/339cdfb9969efcc849a4bad7b24a1a9d19f4deac
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-01-22 (Wed, 22 Jan 2025)

  Changed paths:
    M gui/us_buffer_gui.cpp
    M gui/us_buffer_gui.h
    M gui/us_model_gui.cpp
    M gui/us_model_gui.h
    M gui/us_rotor_gui.cpp
    M gui/us_rotor_gui.h
    M gui/us_sim_params_gui.cpp
    M gui/us_sim_params_gui.h
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_astfem_sim/us_astfem_sim.h
    M programs/us_astfem_sim/us_clipdata.h

  Log Message:
  -----------
  Add CLI support and refactor US Astfem Sim module

Implemented comprehensive command-line interface (CLI) parsing to enable headless operation, including flags for model, buffer, simulation parameters, rotor, and output options. Refactored variable names, added initialization for key attributes, and made codebase improvements like replacing raw pointers and enhancing readability. Introduced optional GUI-less behavior for improved automation and streamlined workflow.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 4dfcb52b7d4544e654ab73f30cafde902136c303
      https://github.com/ehb54/ultrascan3/commit/4dfcb52b7d4544e654ab73f30cafde902136c303
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-01-22 (Wed, 22 Jan 2025)

  Changed paths:
    M programs/us_astfem_sim/us_astfem_sim.cpp

  Log Message:
  -----------
  Fix: us_astfem_sim producing wrong timestates

Corrected the formula for omega2t sum to use the average speed during acceleration instead of the final speed for each step. This fixes https://github.com/ehb54/ultrascan-tickets/issues/406

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 6fda53236b145fc4bb45c3d2131b23104c40d7f2
      https://github.com/ehb54/ultrascan3/commit/6fda53236b145fc4bb45c3d2131b23104c40d7f2
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-01-22 (Wed, 22 Jan 2025)

  Changed paths:
    M gui/us_rotor_gui.cpp

  Log Message:
  -----------
  Fix: remove debugging output

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 2b0c029fb49d64016b45c28bf892af49e47be5dc
      https://github.com/ehb54/ultrascan3/commit/2b0c029fb49d64016b45c28bf892af49e47be5dc
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-01-23 (Thu, 23 Jan 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: initialize new GUI


  Commit: 0adb41b3afedac5cf0dbc83f990bce306d3e6619
      https://github.com/ehb54/ultrascan3/commit/0adb41b3afedac5cf0dbc83f990bce306d3e6619
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-01-24 (Fri, 24 Jan 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: US_Grid_Preset completed


  Commit: 217edacf0513dacb7b6bd402106bcf486f788409
      https://github.com/ehb54/ultrascan3/commit/217edacf0513dacb7b6bd402106bcf486f788409
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-01-24 (Fri, 24 Jan 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: add slot the update the z_param. modify indentation in the header file.


  Commit: 306f48b6ec1533123518fd0a3a762357eed805eb
      https://github.com/ehb54/ultrascan3/commit/306f48b6ec1533123518fd0a3a762357eed805eb
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-01-27 (Mon, 27 Jan 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: prune old variables, start to initialize validating the parameters.


  Commit: a03b3f87db08330a6646d89cdc3457a469205417
      https://github.com/ehb54/ultrascan3/commit/a03b3f87db08330a6646d89cdc3457a469205417
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-01-27 (Mon, 27 Jan 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp

  Log Message:
  -----------
  us_grid_editor.cpp: update the lineedit validators


  Commit: ebd3ff2aaae8a0336c19561d5f3ab0a99eb64207
      https://github.com/ehb54/ultrascan3/commit/ebd3ff2aaae8a0336c19561d5f3ab0a99eb64207
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-01-27 (Mon, 27 Jan 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: add calculate_20w().


  Commit: bf724828309bb9e8560642e2f919f7ba117eaf33
      https://github.com/ehb54/ultrascan3/commit/bf724828309bb9e8560642e2f919f7ba117eaf33
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-01-28 (Tue, 28 Jan 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp

  Log Message:
  -----------
  us_grid_editor.cpp: add formula when  ATTR_V, ATTR_K, ATTR_W are fixed


  Commit: deb8ad96576d29e44f3d8223029f2cbaff256b05
      https://github.com/ehb54/ultrascan3/commit/deb8ad96576d29e44f3d8223029f2cbaff256b05
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-01-29 (Wed, 29 Jan 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp

  Log Message:
  -----------
  us_grid_editor.cpp: disable D and F both when one of them is selected


  Commit: 8b5f0b87f99e94e4d6e740984c9b0d1fa62f5ec1
      https://github.com/ehb54/ultrascan3/commit/8b5f0b87f99e94e4d6e740984c9b0d1fa62f5ec1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-01-29 (Wed, 29 Jan 2025)

  Changed paths:
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h

  Log Message:
  -----------
  GMP | R&D -- perform initial check for the Optima statuses of the runs in LIVE_UPDATE stage...


  Commit: 0687e220a9feafc0db050f12d0f5d3ee7c6c1b63
      https://github.com/ehb54/ultrascan3/commit/0687e220a9feafc0db050f12d0f5d3ee7c6c1b63
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-01-29 (Wed, 29 Jan 2025)

  Changed paths:
    M gui/us_select_item.cpp
    M gui/us_select_item.h
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h

  Log Message:
  -----------
  GMP | R&D -- refresh Optima statuses of the runs in LIVE_UPDATE stage while program is open...


  Commit: addb9f579e2dd5cbd72fbf1735c52d7c47a77c33
      https://github.com/ehb54/ultrascan3/commit/addb9f579e2dd5cbd72fbf1735c52d7c47a77c33
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-01-29 (Wed, 29 Jan 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: finished GridPoint class


  Commit: 10908f7cef0a5dce903452e0462c9e859e8264b3
      https://github.com/ehb54/ultrascan3/commit/10908f7cef0a5dce903452e0462c9e859e8264b3
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-01-30 (Thu, 30 Jan 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: replace the gridpoint struct with GridPoint class


  Commit: ab86005a3fbad734c6627523d6c4982aad10c79a
      https://github.com/ehb54/ultrascan3/commit/ab86005a3fbad734c6627523d6c4982aad10c79a
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-01-31 (Fri, 31 Jan 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: complete the basic conversions between parametera except for (ATTR_S, ATTR_K, ATTR_M) that needs pecial care to calculate the vbar.


  Commit: 1aa2265859f0e9848b2e6460c3fa02b7223f7ed8
      https://github.com/ehb54/ultrascan3/commit/1aa2265859f0e9848b2e6460c3fa02b7223f7ed8
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-01 (Sat, 01 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: initialize plotting the region set by the user


  Commit: e9ce1f869f3d70a58587bfb14a31992c66137ccf
      https://github.com/ehb54/ultrascan3/commit/e9ce1f869f3d70a58587bfb14a31992c66137ccf
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-01 (Sat, 01 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: completed temporary plot


  Commit: 2359f6db522c8bfaa72d1ea161f2bc10ad304426
      https://github.com/ehb54/ultrascan3/commit/2359f6db522c8bfaa72d1ea161f2bc10ad304426
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-01 (Sat, 01 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: refine the GridPoint class.


  Commit: dcbc391ea03885b7e1c6295686f9742a64580748
      https://github.com/ehb54/ultrascan3/commit/dcbc391ea03885b7e1c6295686f9742a64580748
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-03 (Mon, 03 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: major update


  Commit: 494dd27e584a7879afabf948a3329df8e6f83c3c
      https://github.com/ehb54/ultrascan3/commit/494dd27e584a7879afabf948a3329df8e6f83c3c
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-03 (Mon, 03 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: remove unused button. set the grid setPen width to zero


  Commit: d7542fb59a7c1adf0caab113cac758bd95b1faa0
      https://github.com/ehb54/ultrascan3/commit/d7542fb59a7c1adf0caab113cac758bd95b1faa0
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-03 (Mon, 03 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: fixed grid size and color


  Commit: 403e9efa108af451f8c7f99ca1020171439a201d
      https://github.com/ehb54/ultrascan3/commit/403e9efa108af451f8c7f99ca1020171439a201d
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-03 (Mon, 03 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: add final_grid_size, redefine final_grid_points, update overlap()


  Commit: d547e9f87efd7f0a1c02fe4a8bc9c807346de8ee
      https://github.com/ehb54/ultrascan3/commit/d547e9f87efd7f0a1c02fe4a8bc9c807346de8ee
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-03 (Mon, 03 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: add grid_info, clear_xyz, get_xyz


  Commit: 31a589b382a22dcf5420e21ff4f84c74ebc96403
      https://github.com/ehb54/ultrascan3/commit/31a589b382a22dcf5420e21ff4f84c74ebc96403
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-03 (Mon, 03 Feb 2025)

  Changed paths:
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_2dsa/us_analysis_control_2d.cpp
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_convert/us_convert_gui.h
    M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
    M programs/us_xpn_viewer/us_xpn_viewer_gui.h
    M utils/us_model.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/master' into grid_editor


  Commit: cf7e65afe0ca8c23cc34fe1bf86ca37a3c3fd889
      https://github.com/ehb54/ultrascan3/commit/cf7e65afe0ca8c23cc34fe1bf86ca37a3c3fd889
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-04 (Tue, 04 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp

  Log Message:
  -----------
  us_grid_editor: fix the issue with the plot returns to the default setting when make new grid is pressed


  Commit: 72a05eecd155a98e0a5a521b98cb02ce1de0e831
      https://github.com/ehb54/ultrascan3/commit/72a05eecd155a98e0a5a521b98cb02ce1de0e831
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-02-05 (Wed, 05 Feb 2025)

  Changed paths:
    M programs/us_astfem_sim/us_astfem_sim.cpp

  Log Message:
  -----------
  Fix: Revert initialization of meniscus_ar to prevent edge case

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: af5dc7bc3cdf41f685cdeffa60bf4d48688ca13f
      https://github.com/ehb54/ultrascan3/commit/af5dc7bc3cdf41f685cdeffa60bf4d48688ca13f
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-10 (Mon, 10 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: major upgrade to compute parameters


  Commit: 41958e217d3f642e47004b8a44be8245a0da4f69
      https://github.com/ehb54/ultrascan3/commit/41958e217d3f642e47004b8a44be8245a0da4f69
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-16 (Sun, 16 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: major update


  Commit: 26d938f89ff0738af49546366b21444657634356
      https://github.com/ehb54/ultrascan3/commit/26d938f89ff0738af49546366b21444657634356
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-16 (Sun, 16 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: finished delete and update functions


  Commit: edfc9fbc1e94a1bab3d9cb8e2551b9364058d234
      https://github.com/ehb54/ultrascan3/commit/edfc9fbc1e94a1bab3d9cb8e2551b9364058d234
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-16 (Sun, 16 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: add check buffer and related functions


  Commit: d06b8ebc3b6fc5c82f8277ef89e376927ab7c278
      https://github.com/ehb54/ultrascan3/commit/d06b8ebc3b6fc5c82f8277ef89e376927ab7c278
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-16 (Sun, 16 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: finished the function to save the model


  Commit: fd61a482fa590529cfa0df66e7deb4412ad9261a
      https://github.com/ehb54/ultrascan3/commit/fd61a482fa590529cfa0df66e7deb4412ad9261a
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-17 (Mon, 17 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: add a solve to the qube root of vbar when s,k,m are set. rearrange header files between cpp and h files.


  Commit: b93a956ed966321820cb5bdea0278be794229e64
      https://github.com/ehb54/ultrascan3/commit/b93a956ed966321820cb5bdea0278be794229e64
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-17 (Mon, 17 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: rename pb_validate to pb_add_update. calculate vbar from s,k,m. no garanty that mw remains constant


  Commit: 0b1610c071bb749307ef2f5f5f5aae99d318c328
      https://github.com/ehb54/ultrascan3/commit/0b1610c071bb749307ef2f5f5f5aae99d318c328
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-17 (Mon, 17 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: remove f from the preset widget


  Commit: 51084662ee5eb3e87a8b3f90243692d1af323505
      https://github.com/ehb54/ultrascan3/commit/51084662ee5eb3e87a8b3f90243692d1af323505
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-17 (Mon, 17 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: complete US_Grid_Preset


  Commit: a02c57751b6e430ee1fb7743d199e63023bff802
      https://github.com/ehb54/ultrascan3/commit/a02c57751b6e430ee1fb7743d199e63023bff802
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-17 (Mon, 17 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp

  Log Message:
  -----------
  us_grid_editor: removed every condition from calculate_20w() that ATTR_F is one of the preset parameters


  Commit: ec2c6938dfa28eb510bae58a224904e5b9b52713
      https://github.com/ehb54/ultrascan3/commit/ec2c6938dfa28eb510bae58a224904e5b9b52713
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-17 (Mon, 17 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: add all_from_sdv() to use US_Model to compute parameters based on the s, d, v


  Commit: d3adeaef8ad6362e83096b7bbfc08e826d10336d
      https://github.com/ehb54/ultrascan3/commit/d3adeaef8ad6362e83096b7bbfc08e826d10336d
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-17 (Mon, 17 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: fixed sorting. add row, col, id to every grid point. remove f from plot control


  Commit: 61e4b99c7e6be8a068db6a890e0d8c3bce9b7d78
      https://github.com/ehb54/ultrascan3/commit/61e4b99c7e6be8a068db6a890e0d8c3bce9b7d78
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-17 (Mon, 17 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp

  Log Message:
  -----------
  us_grid_editor: refine plot_points()


  Commit: d6ed94bb9e9d47eb067fb948a8990baf4889c23b
      https://github.com/ehb54/ultrascan3/commit/d6ed94bb9e9d47eb067fb948a8990baf4889c23b
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-17 (Mon, 17 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp

  Log Message:
  -----------
  us_grid_editor: activate plotting s over s* and D over D*


  Commit: c570632688385153eb3a929f8a77617b282cc713
      https://github.com/ehb54/ultrascan3/commit/c570632688385153eb3a929f8a77617b282cc713
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-17 (Mon, 17 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp

  Log Message:
  -----------
  us_grid_editor.cpp: refine messages


  Commit: 25efb6fb3b7f9e72a97ea17d1745a692822d381b
      https://github.com/ehb54/ultrascan3/commit/25efb6fb3b7f9e72a97ea17d1745a692822d381b
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-18 (Tue, 18 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: doc strings


  Commit: 45c86fd6e3f10dd7e741d6f2d42b8d0b98a055f1
      https://github.com/ehb54/ultrascan3/commit/45c86fd6e3f10dd7e741d6f2d42b8d0b98a055f1
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-19 (Wed, 19 Feb 2025)

  Changed paths:
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M utils/us_math2.h
    M utils/us_model.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/master' into grid_editor


  Commit: 8d058a5ea8849d9a5fd642fa6724ba7aa52add8c
      https://github.com/ehb54/ultrascan3/commit/8d058a5ea8849d9a5fd642fa6724ba7aa52add8c
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-20 (Thu, 20 Feb 2025)

  Changed paths:
    M gui/us_buffer_gui.cpp
    M gui/us_buffer_gui.h

  Log Message:
  -----------
  us_buffer_gui: signal-slot connection failed with signal valueChanged(double, double). Renamed it to a different name from valueChanged(US_Buffer)


  Commit: 2431aa38f21199e71afaf8c43245e6cc585e9df5
      https://github.com/ehb54/ultrascan3/commit/2431aa38f21199e71afaf8c43245e6cc585e9df5
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-20 (Thu, 20 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: add functions to load buffer from DB


  Commit: 6389170887f6efcd5c9a24c6fe8e30790787f4f2
      https://github.com/ehb54/ultrascan3/commit/6389170887f6efcd5c9a24c6fe8e30790787f4f2
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-02-20 (Thu, 20 Feb 2025)

  Changed paths:
    M programs/us_astfem_sim/us_astfem_sim.cpp

  Log Message:
  -----------
  Add CLI option to handle errors and bypass GUI if specified

Introduced a new command-line option, `errors-cl`, to redirect error messages to the console and prevent GUI initialization when errors occur. Enhanced error handling across various loading processes (model, buffer, simulation parameters, rotor, and save path) to respect this option and exit gracefully in headless mode. This update improves usability in non-GUI environments.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: ffd75b0e5ff1534c899959c9ad6d56d1d94e595f
      https://github.com/ehb54/ultrascan3/commit/ffd75b0e5ff1534c899959c9ad6d56d1d94e595f
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-02-20 (Thu, 20 Feb 2025)

  Changed paths:
    M programs/us_astfem_sim/us_astfem_sim.cpp

  Log Message:
  -----------
  Fix bracket errors

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: effe1589018581a6c261ddc0d52687f0df1f8960
      https://github.com/ehb54/ultrascan3/commit/effe1589018581a6c261ddc0d52687f0df1f8960
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-20 (Thu, 20 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp

  Log Message:
  -----------
  us_grid_editor: add load model push button


  Commit: b2d24ec526474fa78574683989ef3d9b86ca320c
      https://github.com/ehb54/ultrascan3/commit/b2d24ec526474fa78574683989ef3d9b86ca320c
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-21 (Fri, 21 Feb 2025)

  Changed paths:
    M utils/us_model.cpp
    M utils/us_model.h

  Log Message:
  -----------
  utils/us_model: added custom grid metadata. It is designed to be used in the grid_editor program


  Commit: 56a98b54ef6d03376f737ea0096d1b4c0473cc76
      https://github.com/ehb54/ultrascan3/commit/56a98b54ef6d03376f737ea0096d1b4c0473cc76
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-21 (Fri, 21 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: major update:  added model and buffer load function, rearrange layout


  Commit: dfc41297be5972db6a3f2345ab2bcb53e2b565c8
      https://github.com/ehb54/ultrascan3/commit/dfc41297be5972db6a3f2345ab2bcb53e2b565c8
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-24 (Mon, 24 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: add minimu s value checker


  Commit: 56813d212673a18485a6f1f83465adc1db4c5787
      https://github.com/ehb54/ultrascan3/commit/56813d212673a18485a6f1f83465adc1db4c5787
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-24 (Mon, 24 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: add lineedit to show the buffer density and viscodity at different temperature


  Commit: 42a14e5ad72a050ee773a50193ecd92654945ac3
      https://github.com/ehb54/ultrascan3/commit/42a14e5ad72a050ee773a50193ecd92654945ac3
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-02-25 (Tue, 25 Feb 2025)

  Changed paths:
    M gui/us_extinction_gui.cpp

  Log Message:
  -----------
  Updated the extinction column header to file name identifier


  Commit: 61a5d8d4b4d5f1b2b7f4947fc72e6d41699b8dcc
      https://github.com/ehb54/ultrascan3/commit/61a5d8d4b4d5f1b2b7f4947fc72e6d41699b8dcc
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-02-27 (Thu, 27 Feb 2025)

  Changed paths:
    R programs/us_mwl_db_query/us_mwl_db_query.pro
    R programs/us_mwl_db_query/us_mwl_pltctrl.cpp
    R programs/us_mwl_db_query/us_mwl_pltctrl.h
    R programs/us_mwl_db_query/us_mwl_run.cpp
    R programs/us_mwl_db_query/us_mwl_run.h
    R programs/us_mwl_db_query/us_mwlr_viewer.cpp
    R programs/us_mwl_db_query/us_mwlr_viewer.h

  Log Message:
  -----------
  Delete dublicated program to us_mwlr_viewer


  Commit: b8ab84e94c9fb4dacbbd47e22f6beb0a890061a3
      https://github.com/ehb54/ultrascan3/commit/b8ab84e94c9fb4dacbbd47e22f6beb0a890061a3
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-27 (Thu, 27 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp

  Log Message:
  -----------
  us_grid_editor: set QLocale::C in the double validator


  Commit: 4541b25517d15b1eb99058ee9828d9e5bd0910b2
      https://github.com/ehb54/ultrascan3/commit/4541b25517d15b1eb99058ee9828d9e5bd0910b2
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-27 (Thu, 27 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp

  Log Message:
  -----------
  us_grid_editor: improved the message after s, vbar validation failed


  Commit: 8eefe08e3ab0d924f516f2c0a69e358500d6b289
      https://github.com/ehb54/ultrascan3/commit/8eefe08e3ab0d924f516f2c0a69e358500d6b289
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-27 (Thu, 27 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp

  Log Message:
  -----------
  us_grid_editor.cpp: correct plot_tmp() and rm_tmp_items()


  Commit: 1ce20181461c6b648291bb7a48579631601567ae
      https://github.com/ehb54/ultrascan3/commit/1ce20181461c6b648291bb7a48579631601567ae
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-02-28 (Fri, 28 Feb 2025)

  Changed paths:
    M programs/us_config/us_database.cpp
    M programs/us_config/us_database.h

  Log Message:
  -----------
  Add paste button and cleanup strings to prevent errors from copy paste

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: edb299bc2f5d5150bdb1ea20d22c7ae5ab954d3c
      https://github.com/ehb54/ultrascan3/commit/edb299bc2f5d5150bdb1ea20d22c7ae5ab954d3c
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-02-28 (Fri, 28 Feb 2025)

  Changed paths:
    M programs/us_config/us_database.cpp
    M programs/us_config/us_database.h

  Log Message:
  -----------
  Code formating

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 3059db00d76bff6246cb16c7e1630722e23f23bd
      https://github.com/ehb54/ultrascan3/commit/3059db00d76bff6246cb16c7e1630722e23f23bd
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-02-28 (Fri, 28 Feb 2025)

  Changed paths:
    M programs/us_config/us_database.cpp

  Log Message:
  -----------
  Prevent passwords from being trimmed

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 9066b3579ddb35981ad457ed561f480920d3da7f
      https://github.com/ehb54/ultrascan3/commit/9066b3579ddb35981ad457ed561f480920d3da7f
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-28 (Fri, 28 Feb 2025)

  Changed paths:
    M programs/us_predict2/us_predict2.cpp

  Log Message:
  -----------
  us_predict2.cpp: buffer signal is corrected


  Commit: 96e09cb05bc8264f71793b1b9afbf39a4abc599a
      https://github.com/ehb54/ultrascan3/commit/96e09cb05bc8264f71793b1b9afbf39a4abc599a
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-02-28 (Fri, 28 Feb 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: Improved data input validation


  Commit: d11f2339e3fcbe95a88146cf2c9df9d67d180faa
      https://github.com/ehb54/ultrascan3/commit/d11f2339e3fcbe95a88146cf2c9df9d67d180faa
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-03-01 (Sat, 01 Mar 2025)

  Changed paths:
    M utils/us_model.cpp
    M utils/us_model.h

  Log Message:
  -----------
  us_model: adding xLogarithmic feature to the custom grid metadata


  Commit: e402da25d1d7ce993dc9fb7e4e33f8ef0350c59d
      https://github.com/ehb54/ultrascan3/commit/e402da25d1d7ce993dc9fb7e4e33f8ef0350c59d
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-03-02 (Sun, 02 Mar 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: adding X-Axis Logarithmic checkbox.


  Commit: 1ecf921adba79872817fbff51a859f17fd02a21d
      https://github.com/ehb54/ultrascan3/commit/1ecf921adba79872817fbff51a859f17fd02a21d
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-03-02 (Sun, 02 Mar 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: adding a slot when zVal changes. refine minmax double type checking. refine temp plot function


  Commit: fe7133e7390603ec698bb5c89c05bc3cc73ff9c3
      https://github.com/ehb54/ultrascan3/commit/fe7133e7390603ec698bb5c89c05bc3cc73ff9c3
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-03-02 (Sun, 02 Mar 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: adding x-axis logarithmic functions


  Commit: a9ae3505468328c3f517f65ca8a52910227f6cdf
      https://github.com/ehb54/ultrascan3/commit/a9ae3505468328c3f517f65ca8a52910227f6cdf
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-03-03 (Mon, 03 Mar 2025)

  Changed paths:
    R programs/us_esigner_gmp_aux/us_esigner_gmp.pro
    R programs/us_esigner_gmp_aux/us_esigner_gmp_main.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/master' into grid_editor


  Commit: 413c2d2de552a2acbdec6ed1ba3c1c35f7d17cc2
      https://github.com/ehb54/ultrascan3/commit/413c2d2de552a2acbdec6ed1ba3c1c35f7d17cc2
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-03-06 (Thu, 06 Mar 2025)

  Changed paths:
    M gui/us_extinction_gui.cpp

  Log Message:
  -----------
  Merge pull request #179 from ehb54/Issue422

Updated the extinction column header to file name identifier


  Commit: 46ef17ccb5d6b44cdf59a9e15c6078f46a842e34
      https://github.com/ehb54/ultrascan3/commit/46ef17ccb5d6b44cdf59a9e15c6078f46a842e34
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-03-06 (Thu, 06 Mar 2025)

  Changed paths:
    M gui/us_select_item.cpp
    M gui/us_select_item.h
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h

  Log Message:
  -----------
  Merge pull request #183 from ehb54/alexey-dev-issue414

Alexey dev issue414: Show actual instrument status uponn program launch, and also via 'Refresg Optima Status' button


  Commit: ccc9e240b6e49a3788cda94636f78934f3dcea8c
      https://github.com/ehb54/ultrascan3/commit/ccc9e240b6e49a3788cda94636f78934f3dcea8c
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-07 (Fri, 07 Mar 2025)

  Changed paths:
    M programs/us_astfem_sim/us_astfem_sim.cpp

  Log Message:
  -----------
  Initialize meniscus_ar properly

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 46b82dacad6053a4541af6ad2e5bff717ba6e1bc
      https://github.com/ehb54/ultrascan3/commit/46b82dacad6053a4541af6ad2e5bff717ba6e1bc
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-03-07 (Fri, 07 Mar 2025)

  Changed paths:
    R programs/us_mwl_db_query/us_mwl_db_query.pro
    R programs/us_mwl_db_query/us_mwl_pltctrl.cpp
    R programs/us_mwl_db_query/us_mwl_pltctrl.h
    R programs/us_mwl_db_query/us_mwl_run.cpp
    R programs/us_mwl_db_query/us_mwl_run.h
    R programs/us_mwl_db_query/us_mwlr_viewer.cpp
    R programs/us_mwl_db_query/us_mwlr_viewer.h

  Log Message:
  -----------
  Merge pull request #180 from ehb54/lukas/issue-295

Delete dublicated program to us_mwlr_viewer


  Commit: a525c729d9cd3be68cf04fd97f7bebfe2f5313ba
      https://github.com/ehb54/ultrascan3/commit/a525c729d9cd3be68cf04fd97f7bebfe2f5313ba
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-03-07 (Fri, 07 Mar 2025)

  Changed paths:
    M programs/us_config/us_database.cpp
    M programs/us_config/us_database.h

  Log Message:
  -----------
  Merge pull request #181 from ehb54/lukas/db-setup

Enhance database setup GUI


  Commit: 0a3bc328a4ac8c64d292ba083a475c665954e973
      https://github.com/ehb54/ultrascan3/commit/0a3bc328a4ac8c64d292ba083a475c665954e973
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-03-07 (Fri, 07 Mar 2025)

  Changed paths:
    M CITATION.cff

  Log Message:
  -----------
  Update CITATION.cff

Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>


  Commit: a6a1de535bbd14450482d3e5ef9c02f696ae215e
      https://github.com/ehb54/ultrascan3/commit/a6a1de535bbd14450482d3e5ef9c02f696ae215e
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-03-07 (Fri, 07 Mar 2025)

  Changed paths:
    M CITATION.cff

  Log Message:
  -----------
  Update CITATION.cff

Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>


  Commit: 118bd93bedd2e51a719f34206c99ec1e3b758df3
      https://github.com/ehb54/ultrascan3/commit/118bd93bedd2e51a719f34206c99ec1e3b758df3
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-03-07 (Fri, 07 Mar 2025)

  Changed paths:
    M CITATION.cff

  Log Message:
  -----------
  Update CITATION.cff

Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>


  Commit: c1e15b90768e3fa83b13afb5f50bfe5b9561259f
      https://github.com/ehb54/ultrascan3/commit/c1e15b90768e3fa83b13afb5f50bfe5b9561259f
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-03-07 (Fri, 07 Mar 2025)

  Changed paths:
    M CITATION.cff

  Log Message:
  -----------
  Update CITATION.cff

Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>


  Commit: 321e3f890bb7bd7dfb30f8e5b6b28e2f5e934acf
      https://github.com/ehb54/ultrascan3/commit/321e3f890bb7bd7dfb30f8e5b6b28e2f5e934acf
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-03-07 (Fri, 07 Mar 2025)

  Changed paths:
    M CITATION.cff

  Log Message:
  -----------
  Update CITATION.cff

Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>


  Commit: 1247ef6b862e5642ea1071bfe46137577c18529d
      https://github.com/ehb54/ultrascan3/commit/1247ef6b862e5642ea1071bfe46137577c18529d
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-07 (Fri, 07 Mar 2025)

  Changed paths:
    A CITATION.cff

  Log Message:
  -----------
  Merge pull request #108 from ehb54/demeler-patch-1

Added CFF Citation file


  Commit: 282e745bb8512227b52bd3dc78e33c5f6f33dc56
      https://github.com/ehb54/ultrascan3/commit/282e745bb8512227b52bd3dc78e33c5f6f33dc56
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-03-07 (Fri, 07 Mar 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp

  Log Message:
  -----------
  us_grid_editor: update label names


  Commit: 8f82899b4fe2afdd3340c760b4bcbdf5129955dc
      https://github.com/ehb54/ultrascan3/commit/8f82899b4fe2afdd3340c760b4bcbdf5129955dc
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-03-07 (Fri, 07 Mar 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp

  Log Message:
  -----------
  us_grid_editor: fixed the plotting issue if the fixed attribute


  Commit: fe14c2370186048875260e0d4a4656e250809049
      https://github.com/ehb54/ultrascan3/commit/fe14c2370186048875260e0d4a4656e250809049
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-03-10 (Mon, 10 Mar 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp

  Log Message:
  -----------
  us_grid_editor.cpp: update subgride symbol size


  Commit: c8744acce7c4f0a03639f3976447558bca6d4c9c
      https://github.com/ehb54/ultrascan3/commit/c8744acce7c4f0a03639f3976447558bca6d4c9c
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-03-10 (Mon, 10 Mar 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp

  Log Message:
  -----------
  us_grid_editor.cpp: fixed the issue with plotting z-parameter


  Commit: c215b19f2a00d6cd93720052c3724006a08b1aa8
      https://github.com/ehb54/ultrascan3/commit/c215b19f2a00d6cd93720052c3724006a08b1aa8
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-03-10 (Mon, 10 Mar 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp

  Log Message:
  -----------
  us_grid_editor.cpp: refined setup_grid()


  Commit: deb6367c964735ef6c82b1a7a4c9eaa2ca5cfd1f
      https://github.com/ehb54/ultrascan3/commit/deb6367c964735ef6c82b1a7a4c9eaa2ca5cfd1f
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-03-13 (Thu, 13 Mar 2025)

  Changed paths:
    A CITATION.cff
    M gui/us_extinction_gui.cpp
    M gui/us_select_item.cpp
    M gui/us_select_item.h
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_2dsa/us_analysis_control_2d.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_config/us_database.cpp
    M programs/us_config/us_database.h
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_convert/us_convert_gui.h
    R programs/us_esigner_gmp_aux/us_esigner_gmp.pro
    R programs/us_esigner_gmp_aux/us_esigner_gmp_main.cpp
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    R programs/us_mwl_db_query/us_mwl_db_query.pro
    R programs/us_mwl_db_query/us_mwl_pltctrl.cpp
    R programs/us_mwl_db_query/us_mwl_pltctrl.h
    R programs/us_mwl_db_query/us_mwl_run.cpp
    R programs/us_mwl_db_query/us_mwl_run.h
    R programs/us_mwl_db_query/us_mwlr_viewer.cpp
    R programs/us_mwl_db_query/us_mwlr_viewer.h
    M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
    M programs/us_xpn_viewer/us_xpn_viewer_gui.h
    M utils/us_math2.h
    M utils/us_model.cpp

  Log Message:
  -----------
  Merge pull request #186 from ehb54/master

merge master to alexey-dev-issue409


  Commit: 7e4e10bf62879c7d2b688d1a429aa4038ab5b77a
      https://github.com/ehb54/ultrascan3/commit/7e4e10bf62879c7d2b688d1a429aa4038ab5b77a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-13 (Thu, 13 Mar 2025)

  Changed paths:
    M programs/us_config/us_database.cpp

  Log Message:
  -----------
  remove std::as_const


  Commit: 3224a2513d8c881ee7fcc937819ec11e0bf80e5f
      https://github.com/ehb54/ultrascan3/commit/3224a2513d8c881ee7fcc937819ec11e0bf80e5f
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-03-13 (Thu, 13 Mar 2025)

  Changed paths:
    M programs/us_config/us_database.cpp

  Log Message:
  -----------
  Merge pull request #187 from ehb54/lukas/as_const

remove std::as_const


  Commit: f10f53437efb9c3fde45fae8c86bb073b2f97524
      https://github.com/ehb54/ultrascan3/commit/f10f53437efb9c3fde45fae8c86bb073b2f97524
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-13 (Thu, 13 Mar 2025)

  Changed paths:
    M programs/us_astfem_sim/us_astfem_sim.cpp

  Log Message:
  -----------
  Set simulation parameter flag in set_parameters()

Added the `simparams.sim` flag initialization to ensure proper simulation configuration. This change aligns with the expected setup behavior during parameter initialization.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: afca6e1f7bf135d11ee680e132078c76ebe5c262
      https://github.com/ehb54/ultrascan3/commit/afca6e1f7bf135d11ee680e132078c76ebe5c262
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-03-13 (Thu, 13 Mar 2025)

  Changed paths:
    M programs/us_config/us_database.cpp

  Log Message:
  -----------
  Merge pull request #188 from ehb54/master

recent std: problems


  Commit: a78a16abccfc8dab04340497917c4a3d8b3336a2
      https://github.com/ehb54/ultrascan3/commit/a78a16abccfc8dab04340497917c4a3d8b3336a2
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-13 (Thu, 13 Mar 2025)

  Changed paths:
    M programs/us_convert/us_convert.cpp

  Log Message:
  -----------
  Adjust acceleration correction calculations in us_convert.cpp

Updated the tfac multiplier to (3.0 / 2.0) and revised formulas for azwrate and w_offs to ensure more accurate handling of low acceleration scenarios. These changes align better with the intended mathematical model and improve calculation precision.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 612793407746781c19aa30c284bd884030f618d7
      https://github.com/ehb54/ultrascan3/commit/612793407746781c19aa30c284bd884030f618d7
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-13 (Thu, 13 Mar 2025)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Adjust acceleration factor calculation in ASTFEM math.

Updated the `tfac` factor from `4/3` to `3/2` to correct the acceleration time calculation. This aligns the code with the refined mathematical model and ensures more accurate computations of rotor dynamics.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: bc198e7562788b8197fc562cffdf32a0387054a3
      https://github.com/ehb54/ultrascan3/commit/bc198e7562788b8197fc562cffdf32a0387054a3
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-13 (Thu, 13 Mar 2025)

  Changed paths:
    M programs/us_astfem_sim/us_astfem_sim.cpp

  Log Message:
  -----------
  Add additional debug logs for simulation parameter tracking

Enhanced debug output by including more details about key variables such as `w2tinc`, `timeinc`, and `time1` during the parameter setup. These changes aim to facilitate debugging and provide clearer insights into simulation computations.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 86327c48f1ee7b33ec8bcc08944643bf9f235f37
      https://github.com/ehb54/ultrascan3/commit/86327c48f1ee7b33ec8bcc08944643bf9f235f37
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-03-16 (Sun, 16 Mar 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: change the sorting approach to generate subgrids. The new way is to sort all points by their x values, then sort them by their local row index inside the their partial grids. This way produces a better dirtributed subgrid points over partial grids.


  Commit: 629c78a2249e839ec693f5176e3ca70799433f18
      https://github.com/ehb54/ultrascan3/commit/629c78a2249e839ec693f5176e3ca70799433f18
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-03-16 (Sun, 16 Mar 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: rename the 'Default Plot' to the 'plot (y-axis) over (x-axis)'


  Commit: 1cacca27ce85d55b53c61a5089f8364cff737022
      https://github.com/ehb54/ultrascan3/commit/1cacca27ce85d55b53c61a5089f8364cff737022
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-03-16 (Sun, 16 Mar 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  added DbgLv function


  Commit: 5946d5a0f95bf68b1014b8269a019b1a65450ea5
      https://github.com/ehb54/ultrascan3/commit/5946d5a0f95bf68b1014b8269a019b1a65450ea5
  Author: reecemartin48 <135046110+reecemartin48 at users.noreply.github.com>
  Date:   2025-03-17 (Mon, 17 Mar 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  Merge pull request #184 from ehb54/alexey-dev-issue409

GMP | 6. REPORTING -- bug fixed for processing individual C(s) ditributions for PCSA cases


  Commit: 1203a9f845938da8b1dd4281e0dd072a1a37ad61
      https://github.com/ehb54/ultrascan3/commit/1203a9f845938da8b1dd4281e0dd072a1a37ad61
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-17 (Mon, 17 Mar 2025)

  Changed paths:
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_astfem_sim/us_astfem_sim.h

  Log Message:
  -----------
  Automatically save run.xml and edit.xml when saving simulation data

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 6cc9d10408d91922519bc36e4aa578d61facdf51
      https://github.com/ehb54/ultrascan3/commit/6cc9d10408d91922519bc36e4aa578d61facdf51
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-17 (Mon, 17 Mar 2025)

  Changed paths:
    M programs/us_convert/us_convert.cpp

  Log Message:
  -----------
  fix the w_offs calculation based on the new formular

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: d9da67e53742197104782eeca25be6de2e54449c
      https://github.com/ehb54/ultrascan3/commit/d9da67e53742197104782eeca25be6de2e54449c
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-17 (Mon, 17 Mar 2025)

  Changed paths:
    M programs/us_astfem_sim/us_astfem_sim.cpp

  Log Message:
  -----------
  Update omega2t calculation logic and fix type casting.

Revised the computation of `w2tsum` to improve accuracy during acceleration and constant-speed phases. Added a type cast to ensure `time_first` is stored as an integer. These changes enhance precision and prevent potential runtime issues.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: b6a6d1a88ca4a976b611cb81541ea788d2670d97
      https://github.com/ehb54/ultrascan3/commit/b6a6d1a88ca4a976b611cb81541ea788d2670d97
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-17 (Mon, 17 Mar 2025)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Use `qCeil` instead of `qRound` for calculating `t_acc`.

This change ensures more accurate calculation of `t_acc` by rounding up instead of rounding to the nearest value. Additionally, the `rate` is now explicitly set to the acceleration value for improved clarity and consistency.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: cc895612beb7bb224a4d8d1bc03c0d19e76bc213
      https://github.com/ehb54/ultrascan3/commit/cc895612beb7bb224a4d8d1bc03c0d19e76bc213
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-17 (Mon, 17 Mar 2025)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Lower debug log level in us_astfem_math.cpp

Changed DbgLv from 1 to 0 for multiple debug statements to reduce verbosity in logs. This adjustment ensures logs are less cluttered while maintaining relevant debug information at a lower level.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: ee16e82880df9cbae84340b5f9a9005e098cc6d3
      https://github.com/ehb54/ultrascan3/commit/ee16e82880df9cbae84340b5f9a9005e098cc6d3
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-03-18 (Tue, 18 Mar 2025)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h

  Log Message:
  -----------
  GMP-ABDE: 1. EXP.: 5.Solutions -- displaying solutions comments...


  Commit: 1e5517c3d4c26112d469437128daaacf24aad708
      https://github.com/ehb54/ultrascan3/commit/1e5517c3d4c26112d469437128daaacf24aad708
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-19 (Wed, 19 Mar 2025)

  Changed paths:
    M utils/us_simparms.cpp

  Log Message:
  -----------
      Ensure speed_step rollback in case of an incomplete sp_*.xml file

    Added logic to revert speed_step to its previous state if the simulation parameters are found to have empty speed steps. This guarantees consistency and prevents invalid simulation states during processing.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 05883c2e6030793142fc626a132d3b7390307787
      https://github.com/ehb54/ultrascan3/commit/05883c2e6030793142fc626a132d3b7390307787
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-19 (Wed, 19 Mar 2025)

  Changed paths:
    M test/utils/CMakeLists.txt
    A test/utils/test_us_simparams.cpp
    A test/utils/test_us_simparams.h
    M test/utils/test_us_utils_main.cpp

  Log Message:
  -----------
  Add unit tests for US_SimulationParameters functionality

This commit introduces comprehensive unit tests for the US_SimulationParameters class, covering various cases for XML parsing, file handling, and data validation. Tests ensure reliability in saving/loading simulation parameters and handling edge scenarios.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: feeac9e23878ebf748ddec14f1b59d9809fb8135
      https://github.com/ehb54/ultrascan3/commit/feeac9e23878ebf748ddec14f1b59d9809fb8135
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-19 (Wed, 19 Mar 2025)

  Changed paths:
    M test/utils/test_us_simparams.h

  Log Message:
  -----------
  Update include directive to correct header file name

Renamed the included file from "us_simparams.h" to "us_simparms.h" to fix a typo in the file name. This change ensures proper file referencing and resolves any potential compilation issues.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 9c0d51ceb1d8c0da9b557ab665b66be31e601d90
      https://github.com/ehb54/ultrascan3/commit/9c0d51ceb1d8c0da9b557ab665b66be31e601d90
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-19 (Wed, 19 Mar 2025)

  Changed paths:
    M utils/CMakeLists.txt

  Log Message:
  -----------
  Add us_simparms files to utils library in CMakeLists.txt

Included `us_simparms.cpp` and `us_simparms.h` in the utils library definition. This ensures these files are compiled and linked correctly as part of the utils library.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: dc37f6d9f6ead541356d5f5339df6ab132fce492
      https://github.com/ehb54/ultrascan3/commit/dc37f6d9f6ead541356d5f5339df6ab132fce492
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-19 (Wed, 19 Mar 2025)

  Changed paths:
    M test/utils/CMakeLists.txt

  Log Message:
  -----------
  Update Qt5 components in test utils CMakeLists.txt

Added Network and Sql components to the Qt5 find_package call. This ensures the necessary Qt5 modules are available for tests that depend on these additional components.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 809f74141edefadff8f75632172b781908c1efc0
      https://github.com/ehb54/ultrascan3/commit/809f74141edefadff8f75632172b781908c1efc0
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-19 (Wed, 19 Mar 2025)

  Changed paths:
    M utils/CMakeLists.txt

  Log Message:
  -----------
  Add MySQL include directories and link libraries to utils

This update integrates MySQL headers and libraries by including their paths in the CMake configuration. It ensures proper compilation and linkage for utils with MySQL dependencies.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 4e33a7c67fdb2939f309be162b4e8827c263e14f
      https://github.com/ehb54/ultrascan3/commit/4e33a7c67fdb2939f309be162b4e8827c263e14f
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-19 (Wed, 19 Mar 2025)

  Changed paths:
    M utils/CMakeLists.txt

  Log Message:
  -----------
      Remove redundant PUBLIC specifier from target_link_libraries

    The PUBLIC specifier was unnecessary and has been removed to simplify the code. This change has no functional impact but improves clarity and consistency in the CMake configuration.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 58b733d2ce1a18aee5d6f8e663179c5e10061d0c
      https://github.com/ehb54/ultrascan3/commit/58b733d2ce1a18aee5d6f8e663179c5e10061d0c
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-19 (Wed, 19 Mar 2025)

  Changed paths:
    M CMakeLists.txt
    M utils/CMakeLists.txt

  Log Message:
  -----------
  Remove MySQL dependencies and define NO_DB for builds

This commit eliminates hardcoded MySQL include directories and libraries from the utils module, simplifying the build process. Additionally, the NO_DB definition is added to indicate database-related functionalities are disabled. This paves the way for building projects without MySQL support.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 748cc00f2377140ce224a22a77beccdd19f548b9
      https://github.com/ehb54/ultrascan3/commit/748cc00f2377140ce224a22a77beccdd19f548b9
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-19 (Wed, 19 Mar 2025)

  Changed paths:
    M test/utils/test_us_simparams.cpp

  Log Message:
  -----------
  Fix namespace ambiguity for SpeedProfile in test file

Updated the `SpeedProfile` declaration to use the fully qualified `US_SimulationParameters::SpeedProfile` to resolve potential namespace ambiguity. This ensures clarity and correctness in the test code.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: d01b9c7d9856ebc0e4967b7bd2703f7ffbf968a8
      https://github.com/ehb54/ultrascan3/commit/d01b9c7d9856ebc0e4967b7bd2703f7ffbf968a8
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-19 (Wed, 19 Mar 2025)

  Changed paths:
    M utils/CMakeLists.txt

  Log Message:
  -----------
  Update utils library with additional source files and dependencies

Added numerous source and header files to the utils library and linked additional Qt modules (Sql, Network, Xml) and the archive library. Updated include directories to include `/usr/include` and `/usr/include/mysql`. These changes enhance the functionality and compatibility of the utils module.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 07798394ab1b8aa587ed9624fc1b1600a7d06664
      https://github.com/ehb54/ultrascan3/commit/07798394ab1b8aa587ed9624fc1b1600a7d06664
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-19 (Wed, 19 Mar 2025)

  Changed paths:
    M test/utils/test_us_simparams.cpp

  Log Message:
  -----------
  Refactor XML writing and fix test issues

Replaced manual XML string creation with `QXmlStreamWriter` for better readability and maintainability. Fixed typos and improved test assertions to address debug and edge-case issues. Adjusted `speed_step` handling to align with expected behavior in tests.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 0426ae346d05b4905a4e0c5239e779df5fbb3c39
      https://github.com/ehb54/ultrascan3/commit/0426ae346d05b4905a4e0c5239e779df5fbb3c39
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-19 (Wed, 19 Mar 2025)

  Changed paths:
    M test/utils/test_us_simparams.cpp

  Log Message:
  -----------
  Remove debug call from test_us_simparams.

The debug function call was unnecessary and has been removed to clean up the test code. This improves code clarity and reduces noise in the output during test execution.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: d3a9e0d4099f65b91ef36137e1c208eb428b91a2
      https://github.com/ehb54/ultrascan3/commit/d3a9e0d4099f65b91ef36137e1c208eb428b91a2
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-19 (Wed, 19 Mar 2025)

  Changed paths:
    M .github/workflows/codeql-analysis.yml

  Log Message:
  -----------
  Add libarchive-dev to CodeQL build dependencies

The addition of libarchive-dev ensures all necessary libraries are installed for builds during CodeQL analysis. This prevents potential build failures or missing dependencies.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: fd700352a45226b0da7a733e268a08635fc6070f
      https://github.com/ehb54/ultrascan3/commit/fd700352a45226b0da7a733e268a08635fc6070f
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-21 (Fri, 21 Mar 2025)

  Changed paths:
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_fematch/us_fematch.cpp
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  Allow less delay between acceleration end and first scan

The previous calculation relied on an overestimated acceleration rate in the speed step resulting in an offset of -3 for the scan timing based on experimental observations. The updated calculation for the timestate makes this correction obsolete. In order to keep not suddenly display errors for older data, the offset of +1 is applied due to making tf_aend a double instead of an integer avoiding potential rounding issues.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 71ae863185de5258ef5278c458039cd111bbeeb9
      https://github.com/ehb54/ultrascan3/commit/71ae863185de5258ef5278c458039cd111bbeeb9
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-21 (Fri, 21 Mar 2025)

  Changed paths:
    A doc/calc_timestate_documentation.pdf

  Log Message:
  -----------
  Add calc_timestate_documentation.pdf

Include documentation detailing the calculation of timestate functionality.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 3d26140d83e2dd3feb2ffd3c2c3ab97d002c0580
      https://github.com/ehb54/ultrascan3/commit/3d26140d83e2dd3feb2ffd3c2c3ab97d002c0580
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-21 (Fri, 21 Mar 2025)

  Changed paths:
    M programs/us_convert/us_convert.cpp

  Log Message:
  -----------
  Update time offset calculation comment with documentation reference

Added a reference to detailed documentation for the time and omega^2t offset calculation process. This improves code clarity and provides additional context for future developers.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 25a0b68c911eb5456f91e2e26160ca80a7dd1822
      https://github.com/ehb54/ultrascan3/commit/25a0b68c911eb5456f91e2e26160ca80a7dd1822
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-03-21 (Fri, 21 Mar 2025)

  Changed paths:
    A doc/calc_model_coefficient_documentation.pdf
    R utils/calc_coefficient_documentation.pdf
    M utils/us_model.cpp

  Log Message:
  -----------
  Update coefficient documentation reference and relocate file

Updated comments to reference the new path for the coefficient documentation file. Relocated the file from `utils` to the `doc` directory for better organization.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: a5b95158ed1ac65a8123e49d81501eafbcce37bf
      https://github.com/ehb54/ultrascan3/commit/a5b95158ed1ac65a8123e49d81501eafbcce37bf
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-03-21 (Fri, 21 Mar 2025)

  Changed paths:
    M .github/workflows/codeql-analysis.yml
    M CMakeLists.txt
    M test/utils/CMakeLists.txt
    A test/utils/test_us_simparams.cpp
    A test/utils/test_us_simparams.h
    M test/utils/test_us_utils_main.cpp
    M utils/CMakeLists.txt
    M utils/us_simparms.cpp

  Log Message:
  -----------
  Merge pull request #189 from ehb54/lukas/us_astfem_sim_empty_simparams

Prevent missing speed steps in simulation parameters file from crashing applications


  Commit: 1f81945e1f1214104abbb6b6f01441085ad6de3a
      https://github.com/ehb54/ultrascan3/commit/1f81945e1f1214104abbb6b6f01441085ad6de3a
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-03-21 (Fri, 21 Mar 2025)

  Changed paths:
    A doc/calc_model_coefficient_documentation.pdf
    A doc/calc_timestate_documentation.pdf
    M gui/us_buffer_gui.cpp
    M gui/us_buffer_gui.h
    M gui/us_model_gui.cpp
    M gui/us_model_gui.h
    M gui/us_rotor_gui.cpp
    M gui/us_rotor_gui.h
    M gui/us_sim_params_gui.cpp
    M gui/us_sim_params_gui.h
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_astfem_sim/us_astfem_sim.h
    M programs/us_astfem_sim/us_clipdata.h
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_convert/us_convert.cpp
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_fematch/us_fematch.cpp
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    R utils/calc_coefficient_documentation.pdf
    M utils/us_astfem_math.cpp
    M utils/us_model.cpp

  Log Message:
  -----------
  Merge pull request #175 from ehb54/lukas/us_astfem_sim_timestate

US Simulation Module Fix/Enhancement


  Commit: 56cf620d03f05f1182b86adb0c04052d85563eee
      https://github.com/ehb54/ultrascan3/commit/56cf620d03f05f1182b86adb0c04052d85563eee
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-03-27 (Thu, 27 Mar 2025)

  Changed paths:
    M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp

  Log Message:
  -----------
  GMP-Audit-trail: -- misspelling fixed ...


  Commit: d97cfb1f114e56cd09906421fd8f5fc6f3a2d3db
      https://github.com/ehb54/ultrascan3/commit/d97cfb1f114e56cd09906421fd8f5fc6f3a2d3db
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-03-27 (Thu, 27 Mar 2025)

  Changed paths:
    M programs/us_fematch/us_fematch.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP-Report & fematch: -- report: do not show dot/bar plots; us_fematch: do not display dot plots ...


  Commit: 6d39f57d5eec59b5646f60b6d1c4c97b139e4373
      https://github.com/ehb54/ultrascan3/commit/6d39f57d5eec59b5646f60b6d1c4c97b139e4373
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-03-27 (Thu, 27 Mar 2025)

  Changed paths:
    M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp

  Log Message:
  -----------
  Merge pull request #192 from ehb54/alexey-dev-issue444

GMP-Audit-trail: -- misspelling fixed 'Audir trail'...


  Commit: ae4ba13e505f34049dad4698cd8c3b2b30df0282
      https://github.com/ehb54/ultrascan3/commit/ae4ba13e505f34049dad4698cd8c3b2b30df0282
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-03-28 (Fri, 28 Mar 2025)

  Changed paths:
    M gui/us_buffer_gui.cpp
    M gui/us_buffer_gui.h
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h
    M programs/us_predict2/us_predict2.cpp
    M utils/us_model.cpp
    M utils/us_model.h

  Log Message:
  -----------
  Merge pull request #178 from samo38/grid_editor

Grid editor


  Commit: bb94f12668e9b771a610129c554281dabc4f93c6
      https://github.com/ehb54/ultrascan3/commit/bb94f12668e9b771a610129c554281dabc4f93c6
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-03-28 (Fri, 28 Mar 2025)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h

  Log Message:
  -----------
  Merge pull request #190 from ehb54/alexey-dev-issue426

GMP-ABDE: 1. EXP.: 5.Solutions -- displaying solutions comments...


  Commit: 538c4d8271a9ace7983fc72da38a1e5af89dfafa
      https://github.com/ehb54/ultrascan3/commit/538c4d8271a9ace7983fc72da38a1e5af89dfafa
  Author: Saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-03-31 (Mon, 31 Mar 2025)

  Changed paths:
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M programs/us_mpi_analysis/us_mpi_analysis.h

  Log Message:
  -----------
  us_mpi_analysis: add variance_mc_combined to calculate the variance of MC combined model


  Commit: c233d74dcd0744e41d861f7071eab64d08919d86
      https://github.com/ehb54/ultrascan3/commit/c233d74dcd0744e41d861f7071eab64d08919d86
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-03-31 (Mon, 31 Mar 2025)

  Changed paths:
    M programs/us_fematch/us_fematch.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  Merge pull request #193 from ehb54/alexey-dev-issue446

GMP-Report & fematch: -- report: do not show dot/bar plots; us_fematch: do not display dor plots


  Commit: 98f8be40832b0ce57fef6e32c2024f711e9259d6
      https://github.com/ehb54/ultrascan3/commit/98f8be40832b0ce57fef6e32c2024f711e9259d6
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-04-01 (Tue, 01 Apr 2025)

  Changed paths:
    M gui/us_buffer_gui.cpp
    M gui/us_buffer_gui.h
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h
    M programs/us_predict2/us_predict2.cpp

  Log Message:
  -----------
  I reverted the signal BufferDataChanged to what it was before i.e. valueChanged. So we have two signals with the same name valueChanged but one emits US_Buffer and the other emits two double values. We have to use SIGNAL and SLOT macros to handle the casting, otherwise you get errors at compilation step if you connect it through function reference.


  Commit: 32cabd46de2e426ca43a909949109b82e383358d
      https://github.com/ehb54/ultrascan3/commit/32cabd46de2e426ca43a909949109b82e383358d
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-04-01 (Tue, 01 Apr 2025)

  Changed paths:
    M gui/us_buffer_gui.cpp
    M gui/us_buffer_gui.h
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h
    M programs/us_predict2/us_predict2.cpp

  Log Message:
  -----------
  Merge pull request #196 from samo38/issue_447

Ticket 447: Master branch build failing


  Commit: 9b1f60a54ddb46ae3d84e0cb8585deee6ca24f58
      https://github.com/ehb54/ultrascan3/commit/9b1f60a54ddb46ae3d84e0cb8585deee6ca24f58
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-04-01 (Tue, 01 Apr 2025)

  Changed paths:
    M gui/us_buffer_gui.cpp
    M gui/us_buffer_gui.h
    M programs/us_fematch/us_fematch.cpp
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h
    M programs/us_predict2/us_predict2.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/master' into issue_mc_rmsd_391


  Commit: 7b5fb9bf1e8687feb4b07f69e652fef0f6c2f556
      https://github.com/ehb54/ultrascan3/commit/7b5fb9bf1e8687feb4b07f69e652fef0f6c2f556
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-04-01 (Tue, 01 Apr 2025)

  Changed paths:
    M utils/us_model.cpp

  Log Message:
  -----------
  us_model.cpp: report the table variance instead of the xml file variance if the model type is MC


  Commit: 393be4ba848a58c5ca53268b0598b22cecd1d8a6
      https://github.com/ehb54/ultrascan3/commit/393be4ba848a58c5ca53268b0598b22cecd1d8a6
  Author: samo38 <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-04-01 (Tue, 01 Apr 2025)

  Changed paths:
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M programs/us_mpi_analysis/us_mpi_analysis.h

  Log Message:
  -----------
  us_mpi_analysis: rename variance_mc_combined function to rmsd_combined_mc_models


  Commit: 6511a035825ebcbc6b1b31b85b20e8db10460a36
      https://github.com/ehb54/ultrascan3/commit/6511a035825ebcbc6b1b31b85b20e8db10460a36
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-04-02 (Wed, 02 Apr 2025)

  Changed paths:
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M programs/us_mpi_analysis/us_mpi_analysis.h
    M utils/us_model.cpp

  Log Message:
  -----------
  Merge pull request #197 from samo38/issue_mc_rmsd_391

ticket 391: us_fematch MC rmsd


  Commit: 16f83a88ccafb90a5ae28bdfbd2302738f592776
      https://github.com/ehb54/ultrascan3/commit/16f83a88ccafb90a5ae28bdfbd2302738f592776
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-04-03 (Thu, 03 Apr 2025)

  Changed paths:
    M .github/workflows/codeql-analysis.yml
    A CITATION.cff
    M CMakeLists.txt
    A doc/calc_model_coefficient_documentation.pdf
    A doc/calc_timestate_documentation.pdf
    M gui/us_buffer_gui.cpp
    M gui/us_buffer_gui.h
    M gui/us_extinction_gui.cpp
    M gui/us_model_gui.cpp
    M gui/us_model_gui.h
    M gui/us_rotor_gui.cpp
    M gui/us_rotor_gui.h
    M gui/us_select_item.cpp
    M gui/us_select_item.h
    M gui/us_sim_params_gui.cpp
    M gui/us_sim_params_gui.h
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_astfem_sim/us_astfem_sim.h
    M programs/us_astfem_sim/us_clipdata.h
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_config/us_database.cpp
    M programs/us_config/us_database.h
    M programs/us_convert/us_convert.cpp
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_fematch/us_fematch.cpp
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M programs/us_mpi_analysis/us_mpi_analysis.h
    R programs/us_mwl_db_query/us_mwl_db_query.pro
    R programs/us_mwl_db_query/us_mwl_pltctrl.cpp
    R programs/us_mwl_db_query/us_mwl_pltctrl.h
    R programs/us_mwl_db_query/us_mwl_run.cpp
    R programs/us_mwl_db_query/us_mwl_run.h
    R programs/us_mwl_db_query/us_mwlr_viewer.cpp
    R programs/us_mwl_db_query/us_mwlr_viewer.h
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M test/utils/CMakeLists.txt
    A test/utils/test_us_simparams.cpp
    A test/utils/test_us_simparams.h
    M test/utils/test_us_utils_main.cpp
    M utils/CMakeLists.txt
    R utils/calc_coefficient_documentation.pdf
    M utils/us_astfem_math.cpp
    M utils/us_model.cpp
    M utils/us_model.h
    M utils/us_simparms.cpp

  Log Message:
  -----------
  Merge pull request #199 from ehb54/master

Merge current master to alexey-dev-ussue425


Compare: https://github.com/ehb54/ultrascan3/compare/e85004ebe04c...16f83a88ccaf

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