[us-commits] [ehb54/ultrascan3] 139586: Clang-Format-Demonstration
Lukas Dobler
noreply at github.com
Thu Aug 7 10:27:59 MDT 2025
Branch: refs/heads/lukas/clang-format-example-google
Home: https://github.com/ehb54/ultrascan3
Commit: 1395869797bc76c0393419b9c91fc15b3523c462
https://github.com/ehb54/ultrascan3/commit/1395869797bc76c0393419b9c91fc15b3523c462
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-08-07 (Thu, 07 Aug 2025)
Changed paths:
M admin/release/ubuntu/mathops.h
M admin/shm_ipc/main.cpp
M admin/shm_open/main.cpp
M admin/shmutil/main.cpp
M alpha/us.cpp
M gui/us_abstractrotor_gui.cpp
M gui/us_abstractrotor_gui.h
M gui/us_analysis_base2.cpp
M gui/us_analysis_base2.h
M gui/us_analyte_gui.cpp
M gui/us_analyte_gui.h
M gui/us_associations_gui.cpp
M gui/us_associations_gui.h
M gui/us_buffer_gui.cpp
M gui/us_buffer_gui.h
M gui/us_choice.cpp
M gui/us_choice.h
M gui/us_colorgradIO.cpp
M gui/us_colorgradIO.h
M gui/us_combined_plots_parms_gui.cpp
M gui/us_combined_plots_parms_gui.h
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
M gui/us_data_loader.cpp
M gui/us_data_loader.h
M gui/us_edit_spectrum.cpp
M gui/us_edit_spectrum.h
M gui/us_editor.cpp
M gui/us_editor.h
M gui/us_editor_gui.cpp
M gui/us_editor_gui.h
M gui/us_extinctfitter_gui.cpp
M gui/us_extinctfitter_gui.h
M gui/us_extinction_gui.cpp
M gui/us_extinction_gui.h
M gui/us_failed_gmp_run_gui.cpp
M gui/us_failed_gmp_run_gui.h
M gui/us_gui_settings.cpp
M gui/us_gui_settings.h
M gui/us_gui_util.cpp
M gui/us_gui_util.h
M gui/us_help.cpp
M gui/us_help.h
M gui/us_images.cpp
M gui/us_images.h
M gui/us_investigator.cpp
M gui/us_investigator.h
M gui/us_license.cpp
M gui/us_license.h
M gui/us_load_auc.cpp
M gui/us_load_auc.h
M gui/us_loadable_noise.cpp
M gui/us_loadable_noise.h
M gui/us_mac_utils.c
M gui/us_mac_utils.h
M gui/us_minimize.cpp
M gui/us_minimize.h
M gui/us_model_editor.cpp
M gui/us_model_editor.h
M gui/us_model_gui.cpp
M gui/us_model_gui.h
M gui/us_model_loader.cpp
M gui/us_model_loader.h
M gui/us_mwl_data.cpp
M gui/us_mwl_data.h
M gui/us_new_spectrum.cpp
M gui/us_new_spectrum.h
M gui/us_noise_loader.cpp
M gui/us_noise_loader.h
M gui/us_passwd.cpp
M gui/us_passwd.h
M gui/us_pixmaps.h
M gui/us_plot.cpp
M gui/us_plot.h
M gui/us_plot3d.cpp
M gui/us_plot3d.h
M gui/us_predict1.cpp
M gui/us_predict1.h
M gui/us_project_gui.cpp
M gui/us_project_gui.h
M gui/us_properties.cpp
M gui/us_properties.h
M gui/us_report_general_gui.cpp
M gui/us_report_general_gui.h
M gui/us_report_gui.cpp
M gui/us_report_gui.h
M gui/us_resids_bitmap.cpp
M gui/us_resids_bitmap.h
M gui/us_rotor_gui.cpp
M gui/us_rotor_gui.h
M gui/us_run_details2.cpp
M gui/us_run_details2.h
M gui/us_sassoc.cpp
M gui/us_sassoc.h
M gui/us_scan_excl_gui.cpp
M gui/us_scan_excl_gui.h
M gui/us_select_edits.cpp
M gui/us_select_edits.h
M gui/us_select_item.cpp
M gui/us_select_item.h
M gui/us_select_runs.cpp
M gui/us_select_runs.h
M gui/us_sim_params_gui.cpp
M gui/us_sim_params_gui.h
M gui/us_solution_gui.cpp
M gui/us_solution_gui.h
M gui/us_spectrodata.cpp
M gui/us_spectrodata.h
M gui/us_table.cpp
M gui/us_table.h
M gui/us_tmst_plot.cpp
M gui/us_tmst_plot.h
M gui/us_widgets.cpp
M gui/us_widgets.h
M gui/us_widgets_dialog.cpp
M gui/us_widgets_dialog.h
M gui/us_win_utils.c
M gui/us_win_utils.h
M gui/us_window_message.cpp
M gui/us_window_message.h
M gui/us_x11_utils.c
M gui/us_x11_utils.h
M programs/us/us.cpp
M programs/us/us.h
M programs/us/us_win_data.cpp
M programs/us_2dplot/us_2dplot.cpp
M programs/us_2dplot/us_2dplot.h
M programs/us_2dsa/us_2dsa.cpp
M programs/us_2dsa/us_2dsa.h
M programs/us_2dsa/us_2dsa_process.cpp
M programs/us_2dsa/us_2dsa_process.h
M programs/us_2dsa/us_adv_analysis_2d.cpp
M programs/us_2dsa/us_adv_analysis_2d.h
M programs/us_2dsa/us_analysis_control_2d.cpp
M programs/us_2dsa/us_analysis_control_2d.h
M programs/us_2dsa/us_plot_control_2d.cpp
M programs/us_2dsa/us_plot_control_2d.h
M programs/us_2dsa/us_resplot_2d.cpp
M programs/us_2dsa/us_resplot_2d.h
M programs/us_2dsa/us_show_norm.cpp
M programs/us_2dsa/us_show_norm.h
M programs/us_2dsa/us_worker_2d.cpp
M programs/us_2dsa/us_worker_2d.h
M programs/us_2dsa/us_worker_calcnorm.cpp
M programs/us_2dsa/us_worker_calcnorm.h
M programs/us_abde/us_abde_main.cpp
M programs/us_abde/us_abde_main.h
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
M programs/us_analysis_profile/us_anapro_main.cpp
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_analyte/us_analyte_main.cpp
M programs/us_assign_reviewers_gmp/us_assign_reviewers_gmp_main.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_astfem_sim/us_astfem_sim.h
M programs/us_astfem_sim/us_clipdata.cpp
M programs/us_astfem_sim/us_clipdata.h
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.h
M programs/us_audit_trail_gmp/us_audit_trail_gmp_main.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.h
M programs/us_autoflow_analysis/us_autoflow_analysis_main.cpp
M programs/us_buffer/us_buffer_main.cpp
M programs/us_buoyancy/us_buoyancy.cpp
M programs/us_buoyancy/us_buoyancy.h
M programs/us_buoyancy/us_buoyancy_main.cpp
M programs/us_colorgradient/us_colorgradient.cpp
M programs/us_colorgradient/us_colorgradient.h
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_com_project/us_com_project_main.cpp
M programs/us_com_project_academic/us_com_project_academic_main.cpp
M programs/us_combine_models/us_combine_models.cpp
M programs/us_combine_models/us_combine_models.h
M programs/us_config/us_admin.cpp
M programs/us_config/us_admin.h
M programs/us_config/us_advanced.cpp
M programs/us_config/us_advanced.h
M programs/us_config/us_color.cpp
M programs/us_config/us_color.h
M programs/us_config/us_config.cpp
M programs/us_config/us_config.h
M programs/us_config/us_database.cpp
M programs/us_config/us_database.h
M programs/us_config/us_font.cpp
M programs/us_config/us_font.h
M programs/us_config/us_newxpnhost_db.cpp
M programs/us_config/us_newxpnhost_db.h
M programs/us_config/us_xpnhost.cpp
M programs/us_config/us_xpnhost.h
M programs/us_config/us_xpnhost_db.cpp
M programs/us_config/us_xpnhost_db.h
M programs/us_convert/us_convert.cpp
M programs/us_convert/us_convert.h
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_convert/us_convert_main.cpp
M programs/us_convert/us_convertio.cpp
M programs/us_convert/us_convertio.h
M programs/us_convert/us_experiment.cpp
M programs/us_convert/us_experiment.h
M programs/us_convert/us_experiment_gui.cpp
M programs/us_convert/us_experiment_gui.h
M programs/us_convert/us_get_run.cpp
M programs/us_convert/us_get_run.h
M programs/us_convert/us_intensity.cpp
M programs/us_convert/us_intensity.h
M programs/us_convert/us_select_triples.cpp
M programs/us_convert/us_select_triples.h
M programs/us_convert/us_selectbox.cpp
M programs/us_convert/us_selectbox.h
M programs/us_dcdt/us_dcdt.cpp
M programs/us_dcdt/us_dcdt.h
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_ddist_combine.h
M programs/us_ddist_combine/us_ddist_combine_main.cpp
M programs/us_ddist_combine/us_select_rundd.cpp
M programs/us_ddist_combine/us_select_rundd.h
M programs/us_density_match/us_density_match.cpp
M programs/us_density_match/us_density_match.h
M programs/us_density_match/us_model_params.cpp
M programs/us_density_match/us_model_params.h
M programs/us_density_match/us_remove_models.cpp
M programs/us_density_match/us_remove_models.h
M programs/us_dmga_init/us_constraints_edit.cpp
M programs/us_dmga_init/us_constraints_edit.h
M programs/us_dmga_init/us_dmga_init.cpp
M programs/us_dmga_init/us_dmga_init.h
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
M programs/us_edit/us_edit_main.cpp
M programs/us_edit/us_edit_scan.cpp
M programs/us_edit/us_edit_scan.h
M programs/us_edit/us_exclude_profile.cpp
M programs/us_edit/us_exclude_profile.h
M programs/us_edit/us_get_edit.cpp
M programs/us_edit/us_get_edit.h
M programs/us_edit/us_ri_noise.cpp
M programs/us_edit/us_ri_noise.h
M programs/us_edit/us_select_lambdas.cpp
M programs/us_edit/us_select_lambdas.h
M programs/us_equiltime/us_equiltime.cpp
M programs/us_equiltime/us_equiltime.h
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
M programs/us_esigner_gmp/us_esigner_gmp_main.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_experiment/us_experiment_main.cpp
M programs/us_experiment/us_proto_ranges.cpp
M programs/us_export_legacy/us_export.cpp
M programs/us_export_legacy/us_export.h
M programs/us_extinction/us_extinction_main.cpp
M programs/us_fds_filemanager/us_fds_filemanager.cpp
M programs/us_fds_filemanager/us_fds_filemanager.h
M programs/us_fematch/us_adv_dmgamc.cpp
M programs/us_fematch/us_adv_dmgamc.h
M programs/us_fematch/us_advanced_fem.cpp
M programs/us_fematch/us_advanced_fem.h
M programs/us_fematch/us_dmga_mc_stats.cpp
M programs/us_fematch/us_dmga_mc_stats.h
M programs/us_fematch/us_fematch.cpp
M programs/us_fematch/us_fematch.h
M programs/us_fematch/us_fematch_main.cpp
M programs/us_fematch/us_plot_control_fem.cpp
M programs/us_fematch/us_plot_control_fem.h
M programs/us_fematch/us_resplot_fem.cpp
M programs/us_fematch/us_resplot_fem.h
M programs/us_fematch/us_thread_worker.cpp
M programs/us_fematch/us_thread_worker.h
M programs/us_fit_meniscus/us_fit_meniscus.cpp
M programs/us_fit_meniscus/us_fit_meniscus.h
M programs/us_fit_meniscus/us_fit_meniscus_main.cpp
M programs/us_ga_init/us_ga_init.cpp
M programs/us_ga_init/us_ga_init.h
M programs/us_ga_init/us_solutedata.cpp
M programs/us_ga_init/us_solutedata.h
M programs/us_globalequil/us_eqfit_control.cpp
M programs/us_globalequil/us_eqfit_control.h
M programs/us_globalequil/us_eqhistogram.cpp
M programs/us_globalequil/us_eqhistogram.h
M programs/us_globalequil/us_eqmath.cpp
M programs/us_globalequil/us_eqmath.h
M programs/us_globalequil/us_eqmodel_control.cpp
M programs/us_globalequil/us_eqmodel_control.h
M programs/us_globalequil/us_eqreporter.cpp
M programs/us_globalequil/us_eqreporter.h
M programs/us_globalequil/us_fit_worker.cpp
M programs/us_globalequil/us_fit_worker.h
M programs/us_globalequil/us_globalequil.cpp
M programs/us_globalequil/us_globalequil.h
M programs/us_globalequil/us_globeq_data.h
M programs/us_globalequil/us_long_messagebox.cpp
M programs/us_globalequil/us_long_messagebox.h
M programs/us_globalequil/us_model_adpars.cpp
M programs/us_globalequil/us_model_adpars.h
M programs/us_globalequil/us_model_select.cpp
M programs/us_globalequil/us_model_select.h
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M programs/us_helpdaemon/us_helpdaemon.cpp
M programs/us_helpdaemon/us_helpdaemon.h
M programs/us_integral/us_delete_models.cpp
M programs/us_integral/us_delete_models.h
M programs/us_integral/us_integral.cpp
M programs/us_integral/us_integral.h
M programs/us_investigator/us_investigator_main.cpp
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
M programs/us_license/us_license.cpp
M programs/us_manage_data/us_data_model.cpp
M programs/us_manage_data/us_data_model.h
M programs/us_manage_data/us_data_process.cpp
M programs/us_manage_data/us_data_process.h
M programs/us_manage_data/us_data_tree.cpp
M programs/us_manage_data/us_data_tree.h
M programs/us_manage_data/us_manage_data.cpp
M programs/us_manage_data/us_manage_data.h
M programs/us_manage_data/us_sync_exper.cpp
M programs/us_manage_data/us_sync_exper.h
M programs/us_model_gui/main.cpp
M programs/us_modelmetrics/us_modelmetrics.cpp
M programs/us_modelmetrics/us_modelmetrics.h
M programs/us_mpi_analysis/2dsa_master.cpp
M programs/us_mpi_analysis/2dsa_worker.cpp
M programs/us_mpi_analysis/dmga_master.cpp
M programs/us_mpi_analysis/dmga_worker.cpp
M programs/us_mpi_analysis/ga_master.cpp
M programs/us_mpi_analysis/ga_worker.cpp
M programs/us_mpi_analysis/parallel_masters.cpp
M programs/us_mpi_analysis/pcsa_master.cpp
M programs/us_mpi_analysis/pcsa_worker.cpp
M programs/us_mpi_analysis/pmasters_compjob.cpp
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_mpi_analysis/us_mpi_analysis.h
M programs/us_mpi_analysis/us_mpi_parse.cpp
M programs/us_mwl_species_fit/us_load_run_noise.cpp
M programs/us_mwl_species_fit/us_load_run_noise.h
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.h
M programs/us_mwl_species_fit/us_mwl_species_fit_main.cpp
M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
M programs/us_mwl_species_sim/us_mwl_species_sim.h
M programs/us_mwl_spectra/us_mwl_spectra.cpp
M programs/us_mwl_spectra/us_mwl_spectra.h
M programs/us_mwl_spectra/us_mwls_pltctl.cpp
M programs/us_mwl_spectra/us_mwls_pltctl.h
M programs/us_mwlr_viewer/us_mwl_pltctrl.cpp
M programs/us_mwlr_viewer/us_mwl_pltctrl.h
M programs/us_mwlr_viewer/us_mwl_run.cpp
M programs/us_mwlr_viewer/us_mwl_run.h
M programs/us_mwlr_viewer/us_mwlr_viewer.cpp
M programs/us_mwlr_viewer/us_mwlr_viewer.h
M programs/us_pcsa/us_adv_analysis_pc.cpp
M programs/us_pcsa/us_adv_analysis_pc.h
M programs/us_pcsa/us_analysis_control_pc.cpp
M programs/us_pcsa/us_analysis_control_pc.h
M programs/us_pcsa/us_mlplot.cpp
M programs/us_pcsa/us_mlplot.h
M programs/us_pcsa/us_mrecs_loader.cpp
M programs/us_pcsa/us_mrecs_loader.h
M programs/us_pcsa/us_pcsa.cpp
M programs/us_pcsa/us_pcsa.h
M programs/us_pcsa/us_pcsa_process.cpp
M programs/us_pcsa/us_pcsa_process.h
M programs/us_pcsa/us_plot_control_pc.cpp
M programs/us_pcsa/us_plot_control_pc.h
M programs/us_pcsa/us_resplot_pc.cpp
M programs/us_pcsa/us_resplot_pc.h
M programs/us_pcsa/us_rpscan.cpp
M programs/us_pcsa/us_rpscan.h
M programs/us_pcsa/us_worker_pc.cpp
M programs/us_pcsa/us_worker_pc.h
M programs/us_predict1/us_predict1_main.cpp
M programs/us_predict2/us_predict2.cpp
M programs/us_predict2/us_predict2.h
M programs/us_predict2/us_predict2_main.cpp
M programs/us_project/us_project_main.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
M programs/us_protocol_dev/us_protocol_dev_main.cpp
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
M programs/us_pseudo3d_combine/us_pseudo3d_combine_main.cpp
M programs/us_pseudo3d_combine/us_remove_distros.cpp
M programs/us_pseudo3d_combine/us_remove_distros.h
M programs/us_pseudo_absorbance/us_add_refScan.cpp
M programs/us_pseudo_absorbance/us_add_refScan.h
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.h
M programs/us_pseudo_absorbance/us_pabs_common.cpp
M programs/us_pseudo_absorbance/us_pabs_common.h
M programs/us_pseudo_absorbance/us_pseudo_absorbance.cpp
M programs/us_pseudo_absorbance/us_pseudo_absorbance.h
M programs/us_pseudo_absorbance/us_refScan_dataIO.cpp
M programs/us_pseudo_absorbance/us_refScan_dataIO.h
M programs/us_pseudo_absorbance/us_remove_ri.cpp
M programs/us_pseudo_absorbance/us_remove_ri.h
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_query_rmsd/us_query_rmsd.h
M programs/us_ramp/us_experiment_gui_ra.cpp
M programs/us_ramp/us_experiment_gui_ra.h
M programs/us_ramp/us_experiment_ra.cpp
M programs/us_ramp/us_experiment_ra.h
M programs/us_ramp/us_get_dbrun_ra.cpp
M programs/us_ramp/us_get_dbrun_ra.h
M programs/us_ramp/us_intensity_ra.cpp
M programs/us_ramp/us_intensity_ra.h
M programs/us_ramp/us_mwlramp.cpp
M programs/us_ramp/us_mwlramp.h
M programs/us_ramp/us_ramp.cpp
M programs/us_ramp/us_ramp.h
M programs/us_ramp/us_ramp_gui.cpp
M programs/us_ramp/us_ramp_gui.h
M programs/us_ramp/us_select_triples_ra.cpp
M programs/us_ramp/us_select_triples_ra.h
M programs/us_ramp/us_selectbox_ra.cpp
M programs/us_ramp/us_selectbox_ra.h
M programs/us_rasmol_control/us_rasmol_control.cpp
M programs/us_rasmol_control/us_rasmol_control.h
M programs/us_reassign_reviewers_gmp/us_reassign_reviewers_gmp_main.cpp
M programs/us_reporter/us_reporter.cpp
M programs/us_reporter/us_reporter.h
M programs/us_reporter/us_sync_db.cpp
M programs/us_reporter/us_sync_db.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_reporter_gmp/us_reporter_gmp_main.cpp
M programs/us_rotor/us_rotor_main.cpp
M programs/us_rotor_calibration/us_get_dbexp.cpp
M programs/us_rotor_calibration/us_get_dbexp.h
M programs/us_rotor_calibration/us_rotor_calibration.cpp
M programs/us_rotor_calibration/us_rotor_calibration.h
M programs/us_sassoc/us_sassoc_main.cpp
M programs/us_second_moment/us_second_moment.cpp
M programs/us_second_moment/us_second_moment.h
M programs/us_solution/us_solution_main.cpp
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
M programs/us_tmst_viewer/us_tmst_viewer.cpp
M programs/us_tmst_viewer/us_tmst_viewer.h
M programs/us_vhw_combine/us_select_runid.cpp
M programs/us_vhw_combine/us_select_runid.h
M programs/us_vhw_combine/us_vhw_combine.cpp
M programs/us_vhw_combine/us_vhw_combine.h
M programs/us_vhw_combine/us_vhwc_pltctl.cpp
M programs/us_vhw_combine/us_vhwc_pltctl.h
M programs/us_vhw_enhanced/us_distrib_plot.cpp
M programs/us_vhw_enhanced/us_distrib_plot.h
M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
M programs/us_vhw_enhanced/us_vhw_enhanced.h
M programs/us_xpn_viewer/us_xpn_run_auc.cpp
M programs/us_xpn_viewer/us_xpn_run_auc.h
M programs/us_xpn_viewer/us_xpn_run_raw.cpp
M programs/us_xpn_viewer/us_xpn_run_raw.h
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.h
M programs/us_xpn_viewer/us_xpn_viewer_main.cpp
M qwtplot3d/3rdparty/gl2ps/gl2ps.c
M qwtplot3d/3rdparty/gl2ps/gl2ps.h
M qwtplot3d/examples/autoswitch/autoswitch.cpp
M qwtplot3d/examples/autoswitch/autoswitch.h
M qwtplot3d/examples/axes/src/axes.h
M qwtplot3d/examples/axes/src/axesmainwindow.cpp
M qwtplot3d/examples/axes/src/axesmainwindow.h
M qwtplot3d/examples/axes/src/main.cpp
M qwtplot3d/examples/enrichments/src/enrichmentmainwindow.cpp
M qwtplot3d/examples/enrichments/src/enrichmentmainwindow.h
M qwtplot3d/examples/enrichments/src/enrichments.cpp
M qwtplot3d/examples/enrichments/src/enrichments.h
M qwtplot3d/examples/enrichments/src/main.cpp
M qwtplot3d/examples/mesh2/src/colormapreader.cpp
M qwtplot3d/examples/mesh2/src/colormapreader.h
M qwtplot3d/examples/mesh2/src/designerworkaround.cpp
M qwtplot3d/examples/mesh2/src/designerworkaround.h
M qwtplot3d/examples/mesh2/src/femreader.h
M qwtplot3d/examples/mesh2/src/functions.h
M qwtplot3d/examples/mesh2/src/lightingdlg.cpp
M qwtplot3d/examples/mesh2/src/lightingdlg.h
M qwtplot3d/examples/mesh2/src/lightingdlgbaseimpl.cpp
M qwtplot3d/examples/mesh2/src/lightingdlgbaseimpl.h
M qwtplot3d/examples/mesh2/src/main.cpp
M qwtplot3d/examples/mesh2/src/mesh.cpp
M qwtplot3d/examples/mesh2/src/mesh2mainwindow.cpp
M qwtplot3d/examples/mesh2/src/mesh2mainwindow.h
M qwtplot3d/examples/simpleplot/simpleplot.cpp
M qwtplot3d/include/qwt3d_autoptr.h
M qwtplot3d/include/qwt3d_autoscaler.h
M qwtplot3d/include/qwt3d_axis.h
M qwtplot3d/include/qwt3d_color.h
M qwtplot3d/include/qwt3d_colorlegend.h
M qwtplot3d/include/qwt3d_coordsys.h
M qwtplot3d/include/qwt3d_drawable.h
M qwtplot3d/include/qwt3d_enrichment.h
M qwtplot3d/include/qwt3d_enrichment_std.h
M qwtplot3d/include/qwt3d_function.h
M qwtplot3d/include/qwt3d_global.h
M qwtplot3d/include/qwt3d_graphplot.h
M qwtplot3d/include/qwt3d_gridmapping.h
M qwtplot3d/include/qwt3d_helper.h
M qwtplot3d/include/qwt3d_io.h
M qwtplot3d/include/qwt3d_io_gl2ps.h
M qwtplot3d/include/qwt3d_io_reader.h
M qwtplot3d/include/qwt3d_label.h
M qwtplot3d/include/qwt3d_mapping.h
M qwtplot3d/include/qwt3d_multiplot.h
M qwtplot3d/include/qwt3d_openglhelper.h
M qwtplot3d/include/qwt3d_parametricsurface.h
M qwtplot3d/include/qwt3d_plot.h
M qwtplot3d/include/qwt3d_portability.h
M qwtplot3d/include/qwt3d_scale.h
M qwtplot3d/include/qwt3d_surfaceplot.h
M qwtplot3d/include/qwt3d_types.h
M qwtplot3d/include/qwt3d_volumeplot.h
M qwtplot3d/src/qwt3d_autoscaler.cpp
M qwtplot3d/src/qwt3d_axis.cpp
M qwtplot3d/src/qwt3d_color.cpp
M qwtplot3d/src/qwt3d_colorlegend.cpp
M qwtplot3d/src/qwt3d_coordsys.cpp
M qwtplot3d/src/qwt3d_dataviews.cpp
M qwtplot3d/src/qwt3d_drawable.cpp
M qwtplot3d/src/qwt3d_enrichment_std.cpp
M qwtplot3d/src/qwt3d_function.cpp
M qwtplot3d/src/qwt3d_gridmapping.cpp
M qwtplot3d/src/qwt3d_gridplot.cpp
M qwtplot3d/src/qwt3d_io.cpp
M qwtplot3d/src/qwt3d_io_gl2ps.cpp
M qwtplot3d/src/qwt3d_io_reader.cpp
M qwtplot3d/src/qwt3d_label.cpp
M qwtplot3d/src/qwt3d_lighting.cpp
M qwtplot3d/src/qwt3d_meshplot.cpp
M qwtplot3d/src/qwt3d_mousekeyboard.cpp
M qwtplot3d/src/qwt3d_movements.cpp
M qwtplot3d/src/qwt3d_parametricsurface.cpp
M qwtplot3d/src/qwt3d_plot.cpp
M qwtplot3d/src/qwt3d_scale.cpp
M qwtplot3d/src/qwt3d_surfaceplot.cpp
M qwtplot3d/src/qwt3d_types.cpp
M test/modelbuilder/us_modelbuilder.cpp
M test/modelbuilder/us_modelbuilder.h
M test/utils/test_us_datafiles.cpp
M test/utils/test_us_datafiles.h
M test/utils/test_us_simparams.cpp
M test/utils/test_us_simparams.h
M test/utils/test_us_util.cpp
M test/utils/test_us_util.h
M test/utils/test_us_utils_main.cpp
M us_somo/attic/docs/calc.c
M us_somo/develop/3dplot/D_calc.cpp
M us_somo/develop/3dplot/colormapreader.cpp
M us_somo/develop/3dplot/colormapreader.h
M us_somo/develop/3dplot/femreader.h
M us_somo/develop/3dplot/functions.h
M us_somo/develop/3dplot/lightingdlg.cpp
M us_somo/develop/3dplot/lightingdlg.h
M us_somo/develop/3dplot/lightingdlgbase.cpp
M us_somo/develop/3dplot/lightingdlgbase.h
M us_somo/develop/3dplot/mesh.cpp
M us_somo/develop/3dplot/mesh2mainwindow.cpp
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M us_somo/develop/3dplot/mesh2mainwindowbase.cpp
M us_somo/develop/3dplot/mesh2mainwindowbase.h
M us_somo/develop/include/Eigen/src/Cholesky/LDLT.h
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M us_somo/develop/include/Eigen/src/CholmodSupport/CholmodSupport.h
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M us_somo/develop/include/Eigen/src/Core/Assign.h
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M us_somo/develop/include/Eigen/src/Core/Assign_MKL.h
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M us_somo/develop/include/Eigen/src/Core/Block.h
M us_somo/develop/include/Eigen/src/Core/BooleanRedux.h
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M us_somo/develop/include/Eigen/src/Core/CwiseTernaryOp.h
M us_somo/develop/include/Eigen/src/Core/CwiseUnaryOp.h
M us_somo/develop/include/Eigen/src/Core/CwiseUnaryView.h
M us_somo/develop/include/Eigen/src/Core/DenseBase.h
M us_somo/develop/include/Eigen/src/Core/DenseCoeffsBase.h
M us_somo/develop/include/Eigen/src/Core/DenseStorage.h
M us_somo/develop/include/Eigen/src/Core/Diagonal.h
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M us_somo/develop/include/Eigen/src/Core/DiagonalProduct.h
M us_somo/develop/include/Eigen/src/Core/Dot.h
M us_somo/develop/include/Eigen/src/Core/EigenBase.h
M us_somo/develop/include/Eigen/src/Core/ForceAlignedAccess.h
M us_somo/develop/include/Eigen/src/Core/Fuzzy.h
M us_somo/develop/include/Eigen/src/Core/GeneralProduct.h
M us_somo/develop/include/Eigen/src/Core/GenericPacketMath.h
M us_somo/develop/include/Eigen/src/Core/GlobalFunctions.h
M us_somo/develop/include/Eigen/src/Core/IO.h
M us_somo/develop/include/Eigen/src/Core/IndexedView.h
M us_somo/develop/include/Eigen/src/Core/Inverse.h
M us_somo/develop/include/Eigen/src/Core/Map.h
M us_somo/develop/include/Eigen/src/Core/MapBase.h
M us_somo/develop/include/Eigen/src/Core/MathFunctions.h
M us_somo/develop/include/Eigen/src/Core/MathFunctionsImpl.h
M us_somo/develop/include/Eigen/src/Core/Matrix.h
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M us_somo/develop/include/Eigen/src/Core/NestByValue.h
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M us_somo/develop/include/Eigen/src/Core/NumTraits.h
M us_somo/develop/include/Eigen/src/Core/PartialReduxEvaluator.h
M us_somo/develop/include/Eigen/src/Core/PermutationMatrix.h
M us_somo/develop/include/Eigen/src/Core/PlainObjectBase.h
M us_somo/develop/include/Eigen/src/Core/Product.h
M us_somo/develop/include/Eigen/src/Core/ProductEvaluators.h
M us_somo/develop/include/Eigen/src/Core/Random.h
M us_somo/develop/include/Eigen/src/Core/Redux.h
M us_somo/develop/include/Eigen/src/Core/Ref.h
M us_somo/develop/include/Eigen/src/Core/Replicate.h
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M us_somo/develop/include/Eigen/src/Core/ReturnByValue.h
M us_somo/develop/include/Eigen/src/Core/Reverse.h
M us_somo/develop/include/Eigen/src/Core/Select.h
M us_somo/develop/include/Eigen/src/Core/SelfAdjointView.h
M us_somo/develop/include/Eigen/src/Core/SelfCwiseBinaryOp.h
M us_somo/develop/include/Eigen/src/Core/Solve.h
M us_somo/develop/include/Eigen/src/Core/SolveTriangular.h
M us_somo/develop/include/Eigen/src/Core/SolverBase.h
M us_somo/develop/include/Eigen/src/Core/StableNorm.h
M us_somo/develop/include/Eigen/src/Core/StlIterators.h
M us_somo/develop/include/Eigen/src/Core/Stride.h
M us_somo/develop/include/Eigen/src/Core/Swap.h
M us_somo/develop/include/Eigen/src/Core/Transpose.h
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M us_somo/develop/include/Eigen/src/Core/TriangularMatrix.h
M us_somo/develop/include/Eigen/src/Core/VectorBlock.h
M us_somo/develop/include/Eigen/src/Core/VectorwiseOp.h
M us_somo/develop/include/Eigen/src/Core/Visitor.h
M us_somo/develop/include/Eigen/src/Core/arch/AVX/Complex.h
M us_somo/develop/include/Eigen/src/Core/arch/AVX/MathFunctions.h
M us_somo/develop/include/Eigen/src/Core/arch/AVX/PacketMath.h
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M us_somo/develop/include/Eigen/src/Core/arch/AVX512/Complex.h
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M us_somo/develop/include/Eigen/src/Core/arch/Default/BFloat16.h
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M us_somo/develop/include/Eigen/src/Core/util/IntegralConstant.h
M us_somo/develop/include/Eigen/src/Core/util/MKL_support.h
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M us_somo/develop/include/Eigen/src/Core/util/SymbolicIndex.h
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M us_somo/develop/shd_mpi/shs.cpp
M us_somo/develop/shd_mpi/shs.h
M us_somo/develop/shd_mpi/shs_data.h
M us_somo/develop/shd_mpi/shs_main.cpp
M us_somo/develop/shd_mpi/shs_use.cpp
M us_somo/develop/shd_mpi/shs_use.h
M us_somo/develop/shd_mpi/test/mpitest.c
M us_somo/develop/shd_mpi/test/mpitest2.c
M us_somo/develop/src/qwt/scrollbar.cpp
M us_somo/develop/src/qwt/scrollbar.h
M us_somo/develop/src/qwt/scrollzoomer.cpp
M us_somo/develop/src/qwt/scrollzoomer.h
M us_somo/develop/src/us3i_color.cpp
M us_somo/develop/src/us3i_editor.cpp
M us_somo/develop/src/us3i_editor_gui.cpp
M us_somo/develop/src/us3i_global.cpp
M us_somo/develop/src/us3i_gui_settings.cpp
M us_somo/develop/src/us3i_gui_util.cpp
M us_somo/develop/src/us3i_gzip.cpp
M us_somo/develop/src/us3i_images.cpp
M us_somo/develop/src/us3i_plot.cpp
M us_somo/develop/src/us3i_settings.cpp
M us_somo/develop/src/us3i_util.cpp
M us_somo/develop/src/us3i_widgets.cpp
M us_somo/develop/src/us3i_widgets_dialog.cpp
M us_somo/develop/src/us_admin.cpp
M us_somo/develop/src/us_arch.cpp
M us_somo/develop/src/us_average.cpp
M us_somo/develop/src/us_cmdline_app.cpp
M us_somo/develop/src/us_color.cpp
M us_somo/develop/src/us_config.cpp
M us_somo/develop/src/us_config_gui.cpp
M us_somo/develop/src/us_container.cpp
M us_somo/develop/src/us_container_grpy.cpp
M us_somo/develop/src/us_csv.cpp
M us_somo/develop/src/us_dirhist.cpp
M us_somo/develop/src/us_editor.cpp
M us_somo/develop/src/us_efa.cpp
M us_somo/develop/src/us_eigen.cpp
M us_somo/develop/src/us_encryption.cpp
M us_somo/develop/src/us_ffd.cpp
M us_somo/develop/src/us_file_util.cpp
M us_somo/develop/src/us_font.cpp
M us_somo/develop/src/us_fractal_dimension.cpp
M us_somo/develop/src/us_global.cpp
M us_somo/develop/src/us_gui_settings.cpp
M us_somo/develop/src/us_gzip.cpp
M us_somo/develop/src/us_help.cpp
M us_somo/develop/src/us_hydrodyn.cpp
M us_somo/develop/src/us_hydrodyn_addatom.cpp
M us_somo/develop/src/us_hydrodyn_addhybrid.cpp
M us_somo/develop/src/us_hydrodyn_addresidue.cpp
M us_somo/develop/src/us_hydrodyn_addsaxs.cpp
M us_somo/develop/src/us_hydrodyn_advanced_config.cpp
M us_somo/develop/src/us_hydrodyn_anaflex_core.cpp
M us_somo/develop/src/us_hydrodyn_anaflex_options.cpp
M us_somo/develop/src/us_hydrodyn_asa.cpp
M us_somo/develop/src/us_hydrodyn_asab1.cpp
M us_somo/develop/src/us_hydrodyn_batch.cpp
M us_somo/develop/src/us_hydrodyn_batch_movie_opts.cpp
M us_somo/develop/src/us_hydrodyn_bd.cpp
M us_somo/develop/src/us_hydrodyn_bd_core.cpp
M us_somo/develop/src/us_hydrodyn_bd_load_results_opts.cpp
M us_somo/develop/src/us_hydrodyn_bd_options.cpp
M us_somo/develop/src/us_hydrodyn_bead_output.cpp
M us_somo/develop/src/us_hydrodyn_beads.cpp
M us_somo/develop/src/us_hydrodyn_beads_load.cpp
M us_somo/develop/src/us_hydrodyn_best.cpp
M us_somo/develop/src/us_hydrodyn_cluster.cpp
M us_somo/develop/src/us_hydrodyn_cluster_additional.cpp
M us_somo/develop/src/us_hydrodyn_cluster_advanced.cpp
M us_somo/develop/src/us_hydrodyn_cluster_best.cpp
M us_somo/develop/src/us_hydrodyn_cluster_bfnb.cpp
M us_somo/develop/src/us_hydrodyn_cluster_bfnb_nsa.cpp
M us_somo/develop/src/us_hydrodyn_cluster_config.cpp
M us_somo/develop/src/us_hydrodyn_cluster_config_server.cpp
M us_somo/develop/src/us_hydrodyn_cluster_dammin.cpp
M us_somo/develop/src/us_hydrodyn_cluster_dmd.cpp
M us_somo/develop/src/us_hydrodyn_cluster_oned.cpp
M us_somo/develop/src/us_hydrodyn_cluster_results.cpp
M us_somo/develop/src/us_hydrodyn_cluster_status.cpp
M us_somo/develop/src/us_hydrodyn_cluster_submit.cpp
M us_somo/develop/src/us_hydrodyn_comparative.cpp
M us_somo/develop/src/us_hydrodyn_core.cpp
M us_somo/develop/src/us_hydrodyn_csv_viewer.cpp
M us_somo/develop/src/us_hydrodyn_dad.cpp
M us_somo/develop/src/us_hydrodyn_dad_baseline_best.cpp
M us_somo/develop/src/us_hydrodyn_dad_ciq.cpp
M us_somo/develop/src/us_hydrodyn_dad_cistarq.cpp
M us_somo/develop/src/us_hydrodyn_dad_conc.cpp
M us_somo/develop/src/us_hydrodyn_dad_conc_csv_frames.cpp
M us_somo/develop/src/us_hydrodyn_dad_conc_load.cpp
M us_somo/develop/src/us_hydrodyn_dad_dctr.cpp
M us_somo/develop/src/us_hydrodyn_dad_fit.cpp
M us_somo/develop/src/us_hydrodyn_dad_fit_ga.cpp
M us_somo/develop/src/us_hydrodyn_dad_fit_global.cpp
M us_somo/develop/src/us_hydrodyn_dad_fit_gsm.cpp
M us_somo/develop/src/us_hydrodyn_dad_gauss_mode.cpp
M us_somo/develop/src/us_hydrodyn_dad_gg.cpp
M us_somo/develop/src/us_hydrodyn_dad_gui.cpp
M us_somo/develop/src/us_hydrodyn_dad_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_baseline2.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_bb.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_guinier.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_powerfit.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_wheel.cpp
M us_somo/develop/src/us_hydrodyn_dad_movie.cpp
M us_somo/develop/src/us_hydrodyn_dad_nth.cpp
M us_somo/develop/src/us_hydrodyn_dad_options.cpp
M us_somo/develop/src/us_hydrodyn_dad_p3d.cpp
M us_somo/develop/src/us_hydrodyn_dad_parameters.cpp
M us_somo/develop/src/us_hydrodyn_dad_plots.cpp
M us_somo/develop/src/us_hydrodyn_dad_scale_trend.cpp
M us_somo/develop/src/us_hydrodyn_dad_simulate.cpp
M us_somo/develop/src/us_hydrodyn_dad_stack.cpp
M us_somo/develop/src/us_hydrodyn_dad_svd.cpp
M us_somo/develop/src/us_hydrodyn_dad_util.cpp
M us_somo/develop/src/us_hydrodyn_dammin_opts.cpp
M us_somo/develop/src/us_hydrodyn_dmd_core.cpp
M us_somo/develop/src/us_hydrodyn_dmd_options.cpp
M us_somo/develop/src/us_hydrodyn_file.cpp
M us_somo/develop/src/us_hydrodyn_file2.cpp
M us_somo/develop/src/us_hydrodyn_fractal_dimension.cpp
M us_somo/develop/src/us_hydrodyn_fractal_dimension_options.cpp
M us_somo/develop/src/us_hydrodyn_grid.cpp
M us_somo/develop/src/us_hydrodyn_grid_atob.cpp
M us_somo/develop/src/us_hydrodyn_grpy.cpp
M us_somo/develop/src/us_hydrodyn_hydrate.cpp
M us_somo/develop/src/us_hydrodyn_hydrate_align.cpp
M us_somo/develop/src/us_hydrodyn_hydro.cpp
M us_somo/develop/src/us_hydrodyn_hydro_zeno.cpp
M us_somo/develop/src/us_hydrodyn_info.cpp
M us_somo/develop/src/us_hydrodyn_load.cpp
M us_somo/develop/src/us_hydrodyn_mals.cpp
M us_somo/develop/src/us_hydrodyn_mals_baseline_best.cpp
M us_somo/develop/src/us_hydrodyn_mals_ciq.cpp
M us_somo/develop/src/us_hydrodyn_mals_cistarq.cpp
M us_somo/develop/src/us_hydrodyn_mals_conc.cpp
M us_somo/develop/src/us_hydrodyn_mals_conc_csv_frames.cpp
M us_somo/develop/src/us_hydrodyn_mals_conc_load.cpp
M us_somo/develop/src/us_hydrodyn_mals_dctr.cpp
M us_somo/develop/src/us_hydrodyn_mals_fit.cpp
M us_somo/develop/src/us_hydrodyn_mals_fit_ga.cpp
M us_somo/develop/src/us_hydrodyn_mals_fit_global.cpp
M us_somo/develop/src/us_hydrodyn_mals_fit_gsm.cpp
M us_somo/develop/src/us_hydrodyn_mals_gauss_mode.cpp
M us_somo/develop/src/us_hydrodyn_mals_gg.cpp
M us_somo/develop/src/us_hydrodyn_mals_gui.cpp
M us_somo/develop/src/us_hydrodyn_mals_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_mals_modes.cpp
M us_somo/develop/src/us_hydrodyn_mals_modes_bb.cpp
M us_somo/develop/src/us_hydrodyn_mals_modes_guinier.cpp
M us_somo/develop/src/us_hydrodyn_mals_modes_wheel.cpp
M us_somo/develop/src/us_hydrodyn_mals_movie.cpp
M us_somo/develop/src/us_hydrodyn_mals_nth.cpp
M us_somo/develop/src/us_hydrodyn_mals_options.cpp
M us_somo/develop/src/us_hydrodyn_mals_p3d.cpp
M us_somo/develop/src/us_hydrodyn_mals_parameters.cpp
M us_somo/develop/src/us_hydrodyn_mals_plots.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_baseline_best.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_ciq.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_cistarq.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_conc.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_conc_csv_frames.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_conc_load.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_dctr.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_fit.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_fit_ga.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_fit_global.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_fit_gsm.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_gauss_mode.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_gg.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_gui.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_bb.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_guinier.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_scale.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_scroll.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_wheel.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_movie.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_nth.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_options.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_p3d.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_parameters.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_plots.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_scale_trend.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_simulate.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_stack.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_svd.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_util.cpp
M us_somo/develop/src/us_hydrodyn_mals_scale_trend.cpp
M us_somo/develop/src/us_hydrodyn_mals_simulate.cpp
M us_somo/develop/src/us_hydrodyn_mals_stack.cpp
M us_somo/develop/src/us_hydrodyn_mals_svd.cpp
M us_somo/develop/src/us_hydrodyn_mals_util.cpp
M us_somo/develop/src/us_hydrodyn_misc.cpp
M us_somo/develop/src/us_hydrodyn_other.cpp
M us_somo/develop/src/us_hydrodyn_overlap.cpp
M us_somo/develop/src/us_hydrodyn_overlap_reduction.cpp
M us_somo/develop/src/us_hydrodyn_pat.cpp
M us_somo/develop/src/us_hydrodyn_pdb_parsing.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool_merge.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool_renum.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool_selres.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool_sort.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool_util.cpp
M us_somo/develop/src/us_hydrodyn_pdb_visualization.cpp
M us_somo/develop/src/us_hydrodyn_results.cpp
M us_somo/develop/src/us_hydrodyn_sas_options_bead_model.cpp
M us_somo/develop/src/us_hydrodyn_sas_options_curve.cpp
M us_somo/develop/src/us_hydrodyn_sas_options_experimental.cpp
M us_somo/develop/src/us_hydrodyn_sas_options_guinier.cpp
M us_somo/develop/src/us_hydrodyn_sas_options_hydration.cpp
M us_somo/develop/src/us_hydrodyn_sas_options_misc.cpp
M us_somo/develop/src/us_hydrodyn_sas_options_sans.cpp
M us_somo/develop/src/us_hydrodyn_sas_options_saxs.cpp
M us_somo/develop/src/us_hydrodyn_sas_options_xsr.cpp
M us_somo/develop/src/us_hydrodyn_save.cpp
M us_somo/develop/src/us_hydrodyn_saxs.cpp
M us_somo/develop/src/us_hydrodyn_saxs_1d.cpp
M us_somo/develop/src/us_hydrodyn_saxs_2d.cpp
M us_somo/develop/src/us_hydrodyn_saxs_buffer.cpp
M us_somo/develop/src/us_hydrodyn_saxs_buffer_conc.cpp
M us_somo/develop/src/us_hydrodyn_saxs_buffer_conc_load.cpp
M us_somo/develop/src/us_hydrodyn_saxs_buffer_nth.cpp
M us_somo/develop/src/us_hydrodyn_saxs_conc.cpp
M us_somo/develop/src/us_hydrodyn_saxs_cormap.cpp
M us_somo/develop/src/us_hydrodyn_saxs_external.cpp
M us_somo/develop/src/us_hydrodyn_saxs_fits.cpp
M us_somo/develop/src/us_hydrodyn_saxs_guinier.cpp
M us_somo/develop/src/us_hydrodyn_saxs_guinier_frames.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_baseline_best.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_bl.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_ciq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_conc.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_conc_csv_frames.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_conc_load.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_dctr.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_fit.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_fit_ga.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_fit_global.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_fit_gsm.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_gauss_mode.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_gg.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_gui.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_bb.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_wheel.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_movie.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_nth.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_options.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_p3d.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_parameters.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_plots.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_scale_trend.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_simulate.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_stack.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_svd.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_util.cpp
M us_somo/develop/src/us_hydrodyn_saxs_ift.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_bead_model.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_load_csv.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_residuals.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_sh.cpp
M us_somo/develop/src/us_hydrodyn_saxs_legend.cpp
M us_somo/develop/src/us_hydrodyn_saxs_load_csv.cpp
M us_somo/develop/src/us_hydrodyn_saxs_loads.cpp
M us_somo/develop/src/us_hydrodyn_saxs_mw.cpp
M us_somo/develop/src/us_hydrodyn_saxs_options.cpp
M us_somo/develop/src/us_hydrodyn_saxs_plots.cpp
M us_somo/develop/src/us_hydrodyn_saxs_pr.cpp
M us_somo/develop/src/us_hydrodyn_saxs_residuals.cpp
M us_somo/develop/src/us_hydrodyn_saxs_screen.cpp
M us_somo/develop/src/us_hydrodyn_saxs_search.cpp
M us_somo/develop/src/us_hydrodyn_script.cpp
M us_somo/develop/src/us_hydrodyn_settings.cpp
M us_somo/develop/src/us_hydrodyn_supc.cpp
M us_somo/develop/src/us_hydrodyn_util.cpp
M us_somo/develop/src/us_hydrodyn_vdw_overlap.cpp
M us_somo/develop/src/us_hydrodyn_write.cpp
M us_somo/develop/src/us_hydrodyn_xsr.cpp
M us_somo/develop/src/us_hydrodyn_zeno.cpp
M us_somo/develop/src/us_imgviewer.cpp
M us_somo/develop/src/us_json.cpp
M us_somo/develop/src/us_license.cpp
M us_somo/develop/src/us_lm.cpp
M us_somo/develop/src/us_lud.cpp
M us_somo/develop/src/us_math.cpp
M us_somo/develop/src/us_matrix.cpp
M us_somo/develop/src/us_mqt.cpp
M us_somo/develop/src/us_pdb_util.cpp
M us_somo/develop/src/us_plot_util.cpp
M us_somo/develop/src/us_plot_zoom.cpp
M us_somo/develop/src/us_pm.cpp
M us_somo/develop/src/us_pm_best.cpp
M us_somo/develop/src/us_pm_best_cylinder.cpp
M us_somo/develop/src/us_pm_best_ellipsoid.cpp
M us_somo/develop/src/us_pm_best_sphere.cpp
M us_somo/develop/src/us_pm_best_spheroid.cpp
M us_somo/develop/src/us_pm_best_torus.cpp
M us_somo/develop/src/us_pm_best_torus_segment.cpp
M us_somo/develop/src/us_pm_fitness.cpp
M us_somo/develop/src/us_pm_ga.cpp
M us_somo/develop/src/us_pm_objects.cpp
M us_somo/develop/src/us_pm_test.cpp
M us_somo/develop/src/us_register.cpp
M us_somo/develop/src/us_saxs_gp.cpp
M us_somo/develop/src/us_saxs_util.cpp
M us_somo/develop/src/us_saxs_util_a2sb.cpp
M us_somo/develop/src/us_saxs_util_asab1.cpp
M us_somo/develop/src/us_saxs_util_best.cpp
M us_somo/develop/src/us_saxs_util_c2check.cpp
M us_somo/develop/src/us_saxs_util_crysol.cpp
M us_somo/develop/src/us_saxs_util_cuda.cpp
M us_somo/develop/src/us_saxs_util_dammin.cpp
M us_somo/develop/src/us_saxs_util_dmd.cpp
M us_somo/develop/src/us_saxs_util_extern.cpp
M us_somo/develop/src/us_saxs_util_gui_only.cpp
M us_somo/develop/src/us_saxs_util_guinier.cpp
M us_somo/develop/src/us_saxs_util_hydrate.cpp
M us_somo/develop/src/us_saxs_util_hydrate_align.cpp
M us_somo/develop/src/us_saxs_util_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_asab1_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_grid_atob_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_pat_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_supc_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_zeno_hydro.cpp
M us_somo/develop/src/us_saxs_util_ift.cpp
M us_somo/develop/src/us_saxs_util_iqq.cpp
M us_somo/develop/src/us_saxs_util_iqq_1d.cpp
M us_somo/develop/src/us_saxs_util_iqq_1d_mpi.cpp
M us_somo/develop/src/us_saxs_util_iqq_bead_model.cpp
M us_somo/develop/src/us_saxs_util_iqq_pdb.cpp
M us_somo/develop/src/us_saxs_util_loads.cpp
M us_somo/develop/src/us_saxs_util_mpi.cpp
M us_somo/develop/src/us_saxs_util_nsa.cpp
M us_somo/develop/src/us_saxs_util_nsa_ga.cpp
M us_somo/develop/src/us_saxs_util_nsa_ga_mpi.cpp
M us_somo/develop/src/us_saxs_util_nsa_gsm.cpp
M us_somo/develop/src/us_saxs_util_nsa_sga.cpp
M us_somo/develop/src/us_saxs_util_pat.cpp
M us_somo/develop/src/us_saxs_util_pm.cpp
M us_somo/develop/src/us_saxs_util_pm_mpi.cpp
M us_somo/develop/src/us_saxs_util_sgp.cpp
M us_somo/develop/src/us_saxs_util_sgp_phys.cpp
M us_somo/develop/src/us_saxs_util_ssbond.cpp
M us_somo/develop/src/us_saxs_util_static.cpp
M us_somo/develop/src/us_sh.cpp
M us_somo/develop/src/us_surfracer.cpp
M us_somo/develop/src/us_svd.cpp
M us_somo/develop/src/us_tar.cpp
M us_somo/develop/src/us_thread.cpp
M us_somo/develop/src/us_timer.cpp
M us_somo/develop/src/us_util.cpp
M us_somo/develop/src/us_vector.cpp
M us_somo/develop/src/us_vvv.cpp
M us_somo/develop/src/us_write_config.cpp
M us_somo/develop/src/us_zeno_cxx.cpp
M us_somo/develop/src/us_zeno_cxx_nf.cpp
M us_somo/develop/us3_config/main.cpp
M us_somo/develop/us3_hydrodyn/main.cpp
M us_somo/develop/us_admin/main.cpp
M us_somo/develop/us_cluster_server_t/main.cpp
M us_somo/develop/us_cluster_server_t/us_cluster_server_config.h
M us_somo/develop/us_cluster_server_t/us_cluster_server_global.h
M us_somo/develop/us_cluster_server_t/us_cluster_server_sockets.h
M us_somo/develop/us_saxs_cmds_mpi/main.cpp
M us_somo/develop/us_saxs_cmds_mpi_cuda/main.cpp
M us_somo/develop/us_saxs_cmds_mpi_cuda/us_cuda.h
M us_somo/develop/us_saxs_cmds_mpi_cuda/us_semaphore.cpp
M us_somo/develop/us_saxs_cmds_mpi_cuda/us_semaphore.h
M us_somo/develop/us_saxs_cmds_t/main.cpp
M us_somo/develop/us_saxs_cmds_t/us_cuda.h
M us_somo/extra/genapp/templates/cluster.cpp
M us_somo/extra/genapp/templates/cluster.h
M us_somo/extra/genapp/templates/dialog.cpp
M us_somo/extra/genapp/templates/dialog.h
M us_somo/extra/genapp/templates/frame.cpp
M us_somo/extra/genapp/templates/frame.h
M us_somo/extra/genapp/templates/saxs_util.cpp
M us_somo/extra/genapp/templates/standard.cpp
M us_somo/extra/genapp/templates/standard.h
M utils/us_ana_profile.cpp
M utils/us_ana_profile.h
M utils/us_analyte.cpp
M utils/us_analyte.h
M utils/us_archive.cpp
M utils/us_archive.h
M utils/us_astfem_math.cpp
M utils/us_astfem_math.h
M utils/us_astfem_rsa.cpp
M utils/us_astfem_rsa.h
M utils/us_buffer.cpp
M utils/us_buffer.h
M utils/us_cfa_data.cpp
M utils/us_cfa_data.h
M utils/us_constants.cpp
M utils/us_constants.h
M utils/us_constraints.h
M utils/us_crc.cpp
M utils/us_crc.h
M utils/us_crypto.cpp
M utils/us_crypto.h
M utils/us_csv_data.cpp
M utils/us_csv_data.h
M utils/us_dataIO.cpp
M utils/us_dataIO.h
M utils/us_datafiles.cpp
M utils/us_datafiles.h
M utils/us_db2.cpp
M utils/us_db2.h
M utils/us_defines.h
M utils/us_dmga_constr.cpp
M utils/us_dmga_constr.h
M utils/us_eprofile.cpp
M utils/us_eprofile.h
M utils/us_extern.h
M utils/us_extinctutils.h
M utils/us_geturl.cpp
M utils/us_geturl.h
M utils/us_global.cpp
M utils/us_global.h
M utils/us_gzip.cpp
M utils/us_gzip.h
M utils/us_hardware.cpp
M utils/us_hardware.h
M utils/us_http_post.cpp
M utils/us_http_post.h
M utils/us_hydrosim.cpp
M utils/us_hydrosim.h
M utils/us_lamm_astfvm.cpp
M utils/us_lamm_astfvm.h
M utils/us_license_t.cpp
M utils/us_license_t.h
M utils/us_link_ssl.cpp
M utils/us_link_ssl.h
M utils/us_lm.cpp
M utils/us_lm.h
M utils/us_local_server.cpp
M utils/us_local_server.h
M utils/us_math2.cpp
M utils/us_math2.h
M utils/us_matrix.cpp
M utils/us_matrix.h
M utils/us_memory.cpp
M utils/us_memory.h
M utils/us_model.cpp
M utils/us_model.h
M utils/us_noise.cpp
M utils/us_noise.h
M utils/us_pcsa_modelrec.cpp
M utils/us_pcsa_modelrec.h
M utils/us_project.cpp
M utils/us_project.h
M utils/us_protocol_util.cpp
M utils/us_protocol_util.h
M utils/us_report.cpp
M utils/us_report.h
M utils/us_report_gmp.cpp
M utils/us_report_gmp.h
M utils/us_rotor.cpp
M utils/us_rotor.h
M utils/us_run_protocol.cpp
M utils/us_run_protocol.h
M utils/us_settings.cpp
M utils/us_settings.h
M utils/us_simparms.cpp
M utils/us_simparms.h
M utils/us_sleep.h
M utils/us_solute.cpp
M utils/us_solute.h
M utils/us_solution.cpp
M utils/us_solution.h
M utils/us_solution_vals.cpp
M utils/us_solution_vals.h
M utils/us_solve_sim.cpp
M utils/us_solve_sim.h
M utils/us_stiffbase.cpp
M utils/us_stiffbase.h
M utils/us_tar.cpp
M utils/us_tar.h
M utils/us_time_state.cpp
M utils/us_time_state.h
M utils/us_timer.cpp
M utils/us_timer.h
M utils/us_util.cpp
M utils/us_util.h
M utils/us_vector.cpp
M utils/us_vector.h
M utils/us_xpn_data.cpp
M utils/us_xpn_data.h
M utils/us_zsolute.cpp
M utils/us_zsolute.h
Log Message:
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