[us-commits] [ehb54/ultrascan3] b91982: Prot_DEV -- dataDisk type of data to reuse in Prot...
ehb54
noreply at github.com
Mon Dec 1 14:39:08 MST 2025
Branch: refs/heads/ehb54-issue-634-a
Home: https://github.com/ehb54/ultrascan3
Commit: b91982360f02fc7d35efdbb917d2e08596c14560
https://github.com/ehb54/ultrascan3/commit/b91982360f02fc7d35efdbb917d2e08596c14560
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-03 (Mon, 03 Nov 2025)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
Log Message:
-----------
Prot_DEV -- dataDisk type of data to reuse in Prot Dev....
Commit: 04ac91d9174e6d65816307faf1663175f2de6e72
https://github.com/ehb54/ultrascan3/commit/04ac91d9174e6d65816307faf1663175f2de6e72
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-03 (Mon, 03 Nov 2025)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
[1]Prot_DEV -- dataDisk type of data to reuse in Prot Dev....
Commit: a107deb079b8089a73b101015763d8462f3aa43c
https://github.com/ehb54/ultrascan3/commit/a107deb079b8089a73b101015763d8462f3aa43c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-03 (Mon, 03 Nov 2025)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
[2]Prot_DEV -- dataDisk type of data to reuse in Prot Dev....
Commit: 77345534ee55741a3995fabe13f6faf8e1c5f881
https://github.com/ehb54/ultrascan3/commit/77345534ee55741a3995fabe13f6faf8e1c5f881
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-03 (Mon, 03 Nov 2025)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
Log Message:
-----------
[3]Prot_DEV -- dataDisk type of data to reuse in Prot Dev....
Commit: 7fc94237d997b68034bf17cbc314276cab5bc394
https://github.com/ehb54/ultrascan3/commit/7fc94237d997b68034bf17cbc314276cab5bc394
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-04 (Tue, 04 Nov 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_experiment/us_experiment.pro
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
[4]Prot_DEV -- Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: cff3d662e38213f7cc385ca99277c08dec6b43aa
https://github.com/ehb54/ultrascan3/commit/cff3d662e38213f7cc385ca99277c08dec6b43aa
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-04 (Tue, 04 Nov 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
Log Message:
-----------
[55]Prot_DEV -- Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: c280a617392dd55877185f3ece5a41202145aa63
https://github.com/ehb54/ultrascan3/commit/c280a617392dd55877185f3ece5a41202145aa63
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-04 (Tue, 04 Nov 2025)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
Log Message:
-----------
[6]Prot_DEV -- Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: 1e35e7a3947fa08e0fd5e651641d80217b2f5337
https://github.com/ehb54/ultrascan3/commit/1e35e7a3947fa08e0fd5e651641d80217b2f5337
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-04 (Tue, 04 Nov 2025)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
[7]Prot_DEV -- Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: 86e9df690a84fc07f0443a794532a3a16247575b
https://github.com/ehb54/ultrascan3/commit/86e9df690a84fc07f0443a794532a3a16247575b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-04 (Tue, 04 Nov 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[8]Prot_DEV -- Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: 47aced1a7b9dd464c9e3233c131bffd2e5a43590
https://github.com/ehb54/ultrascan3/commit/47aced1a7b9dd464c9e3233c131bffd2e5a43590
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-05 (Wed, 05 Nov 2025)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
[9]Prot_DEV -- Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: bf902b2991efbb3e2fc1009ef6800c635b5e7ea0
https://github.com/ehb54/ultrascan3/commit/bf902b2991efbb3e2fc1009ef6800c635b5e7ea0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-05 (Wed, 05 Nov 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
[10]Prot_DEV -- [run names for sunsequent PDs] Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: d24d57352af04940c3cf6e6d3c87044a795c1f32
https://github.com/ehb54/ultrascan3/commit/d24d57352af04940c3cf6e6d3c87044a795c1f32
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-05 (Wed, 05 Nov 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
[10a]Prot_DEV -- [run names for sunsequent PDs] Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: 21d57858d1f94bc1c02fbb7004faa197e3e44d77
https://github.com/ehb54/ultrascan3/commit/21d57858d1f94bc1c02fbb7004faa197e3e44d77
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-05 (Wed, 05 Nov 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
[11a]Prot_DEV -- [run names for sunsequent PDs] Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: 1b35ec93929d2ec945666589dfacd9390605a4c1
https://github.com/ehb54/ultrascan3/commit/1b35ec93929d2ec945666589dfacd9390605a4c1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-05 (Wed, 05 Nov 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
Log Message:
-----------
[12a]Prot_DEV -- [run names for sunsequent PDs] Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: 07982e368feea4dc848c21cf3ef6300332da9eb9
https://github.com/ehb54/ultrascan3/commit/07982e368feea4dc848c21cf3ef6300332da9eb9
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-05 (Wed, 05 Nov 2025)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
[13a]Prot_DEV -- [run names for sunsequent PDs] Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: c8df9d077992267f115dc3a8c6d6c57928fcb568
https://github.com/ehb54/ultrascan3/commit/c8df9d077992267f115dc3a8c6d6c57928fcb568
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-06 (Thu, 06 Nov 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
Log Message:
-----------
[15a]Prot_DEV -- [run names for sunsequent PDs] Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: c1590729931d88a83cc57cdd346ccb2ee12835b4
https://github.com/ehb54/ultrascan3/commit/c1590729931d88a83cc57cdd346ccb2ee12835b4
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-06 (Thu, 06 Nov 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[16a]Prot_DEV -- [run names for sunsequent PDs] Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: 7684ca675c735b07511e83617000346fe1a4731c
https://github.com/ehb54/ultrascan3/commit/7684ca675c735b07511e83617000346fe1a4731c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-08 (Sat, 08 Nov 2025)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
[17a]Prot_DEV -- [run names for sunsequent PDs] Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: 33dfedcbd83e81f3116f6e0051eb43b762a00ce1
https://github.com/ehb54/ultrascan3/commit/33dfedcbd83e81f3116f6e0051eb43b762a00ce1
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-14 (Fri, 14 Nov 2025)
Changed paths:
M gui/us_plot.cpp
M gui/us_plot.h
Log Message:
-----------
Refactor `US_Plot` and related classes for modern C++ standards and improved maintainability
Replaced raw pointers with `nullptr`, leveraged modern Qt signal-slot syntax, and tightened const correctness throughout. Removed legacy Qt version checks and redundant logic for clean and readable code.
Commit: ef64cab1de21434fe0f5d43a73d8f500c37bbfed
https://github.com/ehb54/ultrascan3/commit/ef64cab1de21434fe0f5d43a73d8f500c37bbfed
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-14 (Fri, 14 Nov 2025)
Changed paths:
M gui/us_plot.cpp
Log Message:
-----------
Fix incorrect variable usage and remove redundant `const` specifiers in `US_Plot`
Corrected variable mismatch in `connect` call for canvas color updates. Replaced redundant `const QDir` declarations with `QDir` to align with proper usage. Initialized `selSymbol` with `QwtSymbol::NoSymbol` to prevent uninitialized access.
Commit: aa4ace94a7d0acc500543323e466222bb30c02c7
https://github.com/ehb54/ultrascan3/commit/aa4ace94a7d0acc500543323e466222bb30c02c7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-14 (Fri, 14 Nov 2025)
Changed paths:
M gui/us_plot.cpp
M gui/us_plot.h
Log Message:
-----------
Merge pull request #310 from ehb54/lukas/us_plot_config
Fix us_plot config causing Curves to get symboles
Commit: 4db2218d24fbf448f58e228e33c6634b2ddbe429
https://github.com/ehb54/ultrascan3/commit/4db2218d24fbf448f58e228e33c6634b2ddbe429
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-11-16 (Sun, 16 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
A admin/codeql/docker/local.pri.gui-qt6
Log Message:
-----------
issue 649, testing codeql qt6 build
Commit: 7efd56b0064621de09905cb9d76a56f0a1c83b77
https://github.com/ehb54/ultrascan3/commit/7efd56b0064621de09905cb9d76a56f0a1c83b77
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-11-16 (Sun, 16 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
issue 649, testing codeql qt6 build
Commit: 0b5dfd84a4ed2f5328e79bef342f3fec70845310
https://github.com/ehb54/ultrascan3/commit/0b5dfd84a4ed2f5328e79bef342f3fec70845310
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-11-16 (Sun, 16 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
codeql workflow remove commented section
Commit: 522a7b53313a7a9d4d13450bbaa79b482379ab0a
https://github.com/ehb54/ultrascan3/commit/522a7b53313a7a9d4d13450bbaa79b482379ab0a
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-11-16 (Sun, 16 Nov 2025)
Changed paths:
M admin/codeql/docker/local.pri.gui-qt6
Log Message:
-----------
Remove openglwidgets from QT configuration
Commit: 5e08ea6d12eced7c9aafcaeb63be2b6fc7fd227e
https://github.com/ehb54/ultrascan3/commit/5e08ea6d12eced7c9aafcaeb63be2b6fc7fd227e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-16 (Sun, 16 Nov 2025)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M utils/us_run_protocol.h
Log Message:
-----------
GMP [dataDisk]: 1. EXP. -- init. steps for dealing with arbitrary selection of channels in uploaded data...
Commit: 637512db487f7224a48db9fddadac0121cd0ec6e
https://github.com/ehb54/ultrascan3/commit/637512db487f7224a48db9fddadac0121cd0ec6e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-17 (Mon, 17 Nov 2025)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
Log Message:
-----------
GMP [dataDisk]: 1. EXP. -- [MODS to generated prtotocol check before submission] init. steps for dealing with arbitrary selection of channels in uploaded data...
Commit: 31bffce6f2258893d277cf9e2ab6b5a2290acd70
https://github.com/ehb54/ultrascan3/commit/31bffce6f2258893d277cf9e2ab6b5a2290acd70
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-17 (Mon, 17 Nov 2025)
Changed paths:
M .github/workflows/unit-tests.yml
Log Message:
-----------
Update unit-tests.yml to include additional paths
Commit: 17ce4b6fb272848fdced6c862bae217de71652d8
https://github.com/ehb54/ultrascan3/commit/17ce4b6fb272848fdced6c862bae217de71652d8
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-11-18 (Tue, 18 Nov 2025)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M utils/us_run_protocol.h
Log Message:
-----------
Merge pull request #316 from ehb54/alexey-dev-issue650
Alexey dev issue650: dataDisk submission with arbitrary selection of channels
Commit: b0f38f43b87f21495a47b399bf731e3b11812b15
https://github.com/ehb54/ultrascan3/commit/b0f38f43b87f21495a47b399bf731e3b11812b15
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-18 (Tue, 18 Nov 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP : 6.REPORTER -- ranges for CG-models...
Commit: 6c646f633296c0b2cdf20178c282494f364c1846
https://github.com/ehb54/ultrascan3/commit/6c646f633296c0b2cdf20178c282494f364c1846
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-18 (Tue, 18 Nov 2025)
Changed paths:
M .gitignore
A .gitmodules
M CMakeLists.txt
A CMakePresets.json
A admin/cmake/GenerateVersion.cmake
A admin/cmake/Us3QrcCheck.cmake
A admin/cmake/Us3Resources.cmake
A admin/cmake/UsDefinesParser.cmake
A admin/cmake/platform-config.cmake
A admin/cmake/triplets/x64-osx-dynamic.cmake
R admin/cmake/us_version.h.in
M admin/test/docker/Dockerfile
M alpha/us.cpp
A buildsys/vcpkg/overlay-ports/qwt/portfile.cmake
A buildsys/vcpkg/overlay-ports/qwt/vcpkg.json
A buildsys/vcpkg/overlay-ports/qwtplot3d/portfile.cmake
A buildsys/vcpkg/overlay-ports/qwtplot3d/qwtplot3d-config.cmake.in
A buildsys/vcpkg/overlay-ports/qwtplot3d/vcpkg.json
A doc/manual/CMakeLists.txt
M gui/CMakeLists.txt
M gui/libus_gui.pro
M gui/us_analysis_base2.cpp
M gui/us_analyte_gui.cpp
M gui/us_buffer_gui.cpp
M gui/us_combined_plots_parms_gui.cpp
M gui/us_edit_spectrum.cpp
M gui/us_extinctfitter_gui.cpp
M gui/us_extinction_gui.cpp
M gui/us_gui_settings.cpp
M gui/us_gui_settings.h
M gui/us_gui_util.cpp
R gui/us_mac_utils.c
R gui/us_mac_utils.h
M gui/us_new_spectrum.cpp
M gui/us_plot.cpp
M gui/us_plot.h
M gui/us_plot3d.cpp
M gui/us_report_general_gui.cpp
M gui/us_report_gui.cpp
M gui/us_run_details2.cpp
M gui/us_sassoc.cpp
M gui/us_scan_excl_gui.cpp
M gui/us_sim_params_gui.cpp
M gui/us_solution_gui.cpp
M gui/us_spectrodata.cpp
M gui/us_spectrodata.h
M gui/us_tmst_plot.cpp
M gui/us_widgets.cpp
M gui/us_widgets_dialog.cpp
R gui/us_win_utils.c
R gui/us_win_utils.h
R gui/us_window_message.cpp
R gui/us_window_message.h
R gui/us_x11_utils.c
R gui/us_x11_utils.h
M programs/CMakeLists.txt
A programs/us/CMakeLists.txt
M programs/us/revision.sh
M programs/us/us.cpp
M programs/us/us.pro
M programs/us/us_win_data.cpp
A programs/us/us_win_data.h
A programs/us_2dplot/CMakeLists.txt
M programs/us_2dplot/us_2dplot.cpp
M programs/us_2dplot/us_2dplot.h
A programs/us_2dsa/CMakeLists.txt
M programs/us_2dsa/us_2dsa.cpp
M programs/us_2dsa/us_analysis_control_2d.cpp
M programs/us_2dsa/us_resplot_2d.cpp
M programs/us_2dsa/us_show_norm.cpp
A programs/us_abde/CMakeLists.txt
M programs/us_abde/us_norm_profile.cpp
A programs/us_analysis_profile/CMakeLists.txt
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_anapro_utils.cpp
A programs/us_analyte/CMakeLists.txt
A programs/us_assign_reviewers_gmp/CMakeLists.txt
A programs/us_astfem_sim/CMakeLists.txt
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_astfem_sim/us_clipdata.h
A programs/us_audit_trail_gmp/CMakeLists.txt
M programs/us_autoflow_analysis/CMakeLists.txt
A programs/us_buffer/CMakeLists.txt
A programs/us_buoyancy/CMakeLists.txt
M programs/us_buoyancy/us_buoyancy.cpp
A programs/us_colorgradient/CMakeLists.txt
M programs/us_com_project/CMakeLists.txt
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project_academic/CMakeLists.txt
A programs/us_combine_models/CMakeLists.txt
A programs/us_config/CMakeLists.txt
M programs/us_config/us_color.cpp
A programs/us_convert/CMakeLists.txt
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_intensity.cpp
A programs/us_dcdt/CMakeLists.txt
M programs/us_dcdt/us_dcdt.cpp
A programs/us_ddist_combine/CMakeLists.txt
M programs/us_ddist_combine/us_ddist_combine.cpp
A programs/us_density_match/CMakeLists.txt
A programs/us_dmga_init/CMakeLists.txt
A programs/us_edit/CMakeLists.txt
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit_scan.cpp
M programs/us_edit/us_ri_noise.cpp
A programs/us_equiltime/CMakeLists.txt
M programs/us_equiltime/us_equiltime.cpp
A programs/us_esigner_gmp/CMakeLists.txt
M programs/us_experiment/CMakeLists.txt
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_experiment/us_proto_ranges.cpp
A programs/us_export_legacy/CMakeLists.txt
M programs/us_export_legacy/us_export.cpp
A programs/us_extinction/CMakeLists.txt
A programs/us_fds_filemanager/CMakeLists.txt
M programs/us_fds_filemanager/us_fds_filemanager.cpp
M programs/us_fematch/CMakeLists.txt
M programs/us_fematch/us_adv_dmgamc.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_fematch/us_resplot_fem.cpp
M programs/us_fit_meniscus/CMakeLists.txt
M programs/us_fit_meniscus/us_fit_meniscus.cpp
A programs/us_ga_init/CMakeLists.txt
M programs/us_ga_init/us_ga_init.cpp
A programs/us_globalequil/CMakeLists.txt
M programs/us_globalequil/us_eqfit_control.cpp
M programs/us_globalequil/us_eqhistogram.cpp
M programs/us_globalequil/us_globalequil.cpp
A programs/us_grid_editor/CMakeLists.txt
A programs/us_helpdaemon/CMakeLists.txt
A programs/us_integral/CMakeLists.txt
A programs/us_investigator/CMakeLists.txt
A programs/us_legacy_converter/CMakeLists.txt
A programs/us_license/CMakeLists.txt
A programs/us_manage_data/CMakeLists.txt
A programs/us_model_gui/CMakeLists.txt
A programs/us_modelmetrics/CMakeLists.txt
M programs/us_modelmetrics/us_modelmetrics.cpp
A programs/us_mpi_analysis/CMakeLists.txt
M programs/us_mwl_species_fit/CMakeLists.txt
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
A programs/us_mwl_species_sim/CMakeLists.txt
M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
A programs/us_mwl_spectra/CMakeLists.txt
M programs/us_mwl_spectra/us_mwl_spectra.cpp
A programs/us_mwlr_viewer/CMakeLists.txt
M programs/us_mwlr_viewer/us_mwlr_viewer.cpp
A programs/us_pcsa/CMakeLists.txt
M programs/us_pcsa/us_mlplot.cpp
M programs/us_pcsa/us_pcsa.cpp
M programs/us_pcsa/us_resplot_pc.cpp
M programs/us_pcsa/us_rpscan.cpp
A programs/us_predict1/CMakeLists.txt
A programs/us_predict2/CMakeLists.txt
A programs/us_project/CMakeLists.txt
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
A programs/us_pseudo3d_combine/CMakeLists.txt
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
A programs/us_pseudo_absorbance/CMakeLists.txt
M programs/us_query_rmsd/CMakeLists.txt
A programs/us_ramp/CMakeLists.txt
M programs/us_ramp/us_intensity_ra.cpp
M programs/us_ramp/us_ramp_gui.cpp
R programs/us_rasmol_control/us_rasmol_control.cpp
R programs/us_rasmol_control/us_rasmol_control.h
R programs/us_rasmol_control/us_rasmol_control.pro
A programs/us_reassign_reviewers_gmp/CMakeLists.txt
A programs/us_reporter/CMakeLists.txt
M programs/us_reporter_gmp/CMakeLists.txt
M programs/us_reporter_gmp/us_reporter_gmp.cpp
A programs/us_rotor/CMakeLists.txt
A programs/us_rotor_calibration/CMakeLists.txt
M programs/us_rotor_calibration/us_rotor_calibration.cpp
A programs/us_sassoc/CMakeLists.txt
A programs/us_second_moment/CMakeLists.txt
M programs/us_second_moment/us_second_moment.cpp
A programs/us_solution/CMakeLists.txt
A programs/us_spectrum/CMakeLists.txt
M programs/us_spectrum/us_spectrum.cpp
A programs/us_tmst_viewer/CMakeLists.txt
A programs/us_vhw_combine/CMakeLists.txt
M programs/us_vhw_combine/us_vhw_combine.cpp
A programs/us_vhw_enhanced/CMakeLists.txt
M programs/us_vhw_enhanced/us_distrib_plot.cpp
M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
A programs/us_xpn_viewer/CMakeLists.txt
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M qwtplot3d/CMakeLists.txt
M qwtplot3d/include/qwt3d_openglhelper.h
A scripts/build.sh
M test-docker.sh
M test/CMakeLists.txt
M test/utils/CMakeLists.txt
M test/utils/test_us_ana_profile.cpp
M utils/CMakeLists.txt
M utils/us_defines.h
M utils/us_run_protocol.h
A vcpkg
A vcpkg-configuration.json
A vcpkg.json
Log Message:
-----------
Merge branch 'main' into alexey-dev-issue608
Commit: 0ebfc3ee220014a56edc62db5dfdb61cdf14cc37
https://github.com/ehb54/ultrascan3/commit/0ebfc3ee220014a56edc62db5dfdb61cdf14cc37
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-18 (Tue, 18 Nov 2025)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP-PROT.DEV -- extend the case of re-processing dataDisk runs for arbitrary channels chases...
Commit: b08b1c4672f375b1df4d08eb2e61fd656c9d406d
https://github.com/ehb54/ultrascan3/commit/b08b1c4672f375b1df4d08eb2e61fd656c9d406d
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-11-18 (Tue, 18 Nov 2025)
Changed paths:
A .github/workflows/.yamllint.yml
M .github/workflows/codeql-analysis.yml
A .github/workflows/doc-build.yml
M admin/codeql/docker/local.pri.gui
R admin/codeql/docker/local.pri.gui-qt6
M admin/codeql/docker/local.pri.mpi
M admin/codeql/docker/local.pri.somo
Log Message:
-----------
codeql updates to main branch
Commit: 71e029d4b0191c6f9e49f61052bb4994b733a90e
https://github.com/ehb54/ultrascan3/commit/71e029d4b0191c6f9e49f61052bb4994b733a90e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-18 (Tue, 18 Nov 2025)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
Log Message:
-----------
[1]GMP-PROT.DEV -- extend the case of re-processing dataDisk runs for arbitrary channels chases...
Commit: f49d8cf364400df6d8104e5fd915d79df22d8638
https://github.com/ehb54/ultrascan3/commit/f49d8cf364400df6d8104e5fd915d79df22d8638
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-18 (Tue, 18 Nov 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[2]GMP-PROT.DEV -- extend the case of re-processing dataDisk runs for arbitrary channels chases...
Commit: 8f6a939aba51bb5c70c66d760e2242304e659c0f
https://github.com/ehb54/ultrascan3/commit/8f6a939aba51bb5c70c66d760e2242304e659c0f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-18 (Tue, 18 Nov 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[3]GMP-PROT.DEV -- extend the case of re-processing dataDisk runs for arbitrary channels chases...
Commit: 0cd1156f3fead2acf306d704cca3686a6a2ec32f
https://github.com/ehb54/ultrascan3/commit/0cd1156f3fead2acf306d704cca3686a6a2ec32f
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-11-18 (Tue, 18 Nov 2025)
Changed paths:
A .github/workflows/.yamllint.yml
M .github/workflows/codeql-analysis.yml
A .github/workflows/doc-build.yml
M admin/codeql/docker/local.pri.gui
M admin/codeql/docker/local.pri.mpi
M admin/codeql/docker/local.pri.somo
Log Message:
-----------
Merge pull request #313 from ehb54/ehb54-issue-649
issue 649, testing codeql qt6 build
Commit: 5400614d6c78af525f22b1f858362a99edc462a1
https://github.com/ehb54/ultrascan3/commit/5400614d6c78af525f22b1f858362a99edc462a1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-18 (Tue, 18 Nov 2025)
Changed paths:
A .github/workflows/.yamllint.yml
M .github/workflows/codeql-analysis.yml
A .github/workflows/doc-build.yml
M admin/codeql/docker/local.pri.gui
M admin/codeql/docker/local.pri.mpi
M admin/codeql/docker/local.pri.somo
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M utils/us_run_protocol.h
Log Message:
-----------
Merge pull request #319 from ehb54/main
add main stuff to alexey-dev-issue651
Commit: d40493020d965b05f43ed5c8a2eb1daaf5166a48
https://github.com/ehb54/ultrascan3/commit/d40493020d965b05f43ed5c8a2eb1daaf5166a48
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_ddist_combine.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP 6. REPORT -- for runs based on Custom-Grid model, use correct ranges for ind. and combined distributions...
Commit: 8f345295dc5803000521a47ad53aa246df51eff7
https://github.com/ehb54/ultrascan3/commit/8f345295dc5803000521a47ad53aa246df51eff7
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
A .github/workflows/.yamllint.yml
M .github/workflows/codeql-analysis.yml
A .github/workflows/doc-build.yml
M admin/codeql/docker/local.pri.gui
M admin/codeql/docker/local.pri.mpi
M admin/codeql/docker/local.pri.somo
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M utils/us_run_protocol.h
Log Message:
-----------
Merge pull request #320 from ehb54/main
update to main
Commit: 129b8d9184d5cab1189cca7b84574bf7e97dca76
https://github.com/ehb54/ultrascan3/commit/129b8d9184d5cab1189cca7b84574bf7e97dca76
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Refactor CodeQL workflow for improved caching and builds
Commit: 793e12c735495da5c5b6deed3355e2428e6c2a16
https://github.com/ehb54/ultrascan3/commit/793e12c735495da5c5b6deed3355e2428e6c2a16
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Simplify build step in CodeQL analysis workflow
Removed ccache setup and git configuration from the build step.
Commit: 0f76a4bf8a6ae54cd386ba2a645b0994b3b8b8b5
https://github.com/ehb54/ultrascan3/commit/0f76a4bf8a6ae54cd386ba2a645b0994b3b8b8b5
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Refactor CodeQL analysis workflow
Refactor CodeQL analysis workflow to improve target calculation and build steps.
Commit: 6c80777b7287a29fe978526475e6f099ca3ef827
https://github.com/ehb54/ultrascan3/commit/6c80777b7287a29fe978526475e6f099ca3ef827
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Refactor CodeQL workflow to simplify caching and builds
Removed caching steps for ccache, utils, qwtplot3d, and gui. Added build steps for utils, qwtplot3d, and gui using qmake.
Commit: 27c760f8c268e77d5038469cfd40243fb274f2d1
https://github.com/ehb54/ultrascan3/commit/27c760f8c268e77d5038469cfd40243fb274f2d1
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M .github/workflows/unit-tests.yml
Log Message:
-----------
Update unit-tests.yml to remove path filters for push
Removed specific path filters for push events in unit-tests workflow.
Commit: 2465409a96b820d237f9bf0c3b09b12f859060d7
https://github.com/ehb54/ultrascan3/commit/2465409a96b820d237f9bf0c3b09b12f859060d7
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
Update static analysis workflow trigger paths
Removed specific path triggers for push events in static analysis workflow.
Commit: c1ac9c0b43cdde1480834d2fb742344b9649144f
https://github.com/ehb54/ultrascan3/commit/c1ac9c0b43cdde1480834d2fb742344b9649144f
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
R .github/workflows/.yamllint.yml
A admin/linting/cmake/.cmake-format.yaml
A admin/linting/cmake/README.md
A admin/linting/yaml/.yamllint.yml
Log Message:
-----------
Document CMake formatter
Commit: 391ac4d011a289eafa902e9d56eb4382491f0b66
https://github.com/ehb54/ultrascan3/commit/391ac4d011a289eafa902e9d56eb4382491f0b66
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
M .github/workflows/static-analysis.yml
Log Message:
-----------
Updating nproc
Commit: ea7559d6bcd810ed7a176871e33f0d36b49152e2
https://github.com/ehb54/ultrascan3/commit/ea7559d6bcd810ed7a176871e33f0d36b49152e2
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
M .github/workflows/unit-tests.yml
M admin/linting/cmake/.cmake-format.yaml
M admin/linting/cmake/README.md
Log Message:
-----------
Fix minor comments
Commit: 6e94734ca883da80e058cf4e51dee4474e9863e5
https://github.com/ehb54/ultrascan3/commit/6e94734ca883da80e058cf4e51dee4474e9863e5
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_edit/us_edit.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment.pro
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
Merge pull request #305 from ehb54/alexey-dev-issue608
Alexey dev issue608: Prot. Dev. for DataDisk data types
Commit: 5ff2d239588616635adbdfaf775949a91f5d7565
https://github.com/ehb54/ultrascan3/commit/5ff2d239588616635adbdfaf775949a91f5d7565
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M .github/workflows/doc-build.yml
M .github/workflows/static-analysis.yml
M .github/workflows/unit-tests.yml
Log Message:
-----------
Update checkout action version
Commit: 321b58c1347db9be2b3ef6cbb24e94e5e4119dfa
https://github.com/ehb54/ultrascan3/commit/321b58c1347db9be2b3ef6cbb24e94e5e4119dfa
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M .github/workflows/doc-build.yml
Log Message:
-----------
fix branches
Commit: aad9ec569ffb658a9035b4b0f5c75d8fc050fa1b
https://github.com/ehb54/ultrascan3/commit/aad9ec569ffb658a9035b4b0f5c75d8fc050fa1b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[also aspect ratio of the plots]GMP 6. REPORT -- for runs based on Custom-Grid model, use correct ranges for ind. and combined distributions...
Commit: 5c92b751327dc3f2908415ade46f68cc6ae21f7f
https://github.com/ehb54/ultrascan3/commit/5c92b751327dc3f2908415ade46f68cc6ae21f7f
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-20 (Thu, 20 Nov 2025)
Changed paths:
M gui/libus_gui.pro
A gui/us_convert_gui.cpp
A gui/us_convert_gui.h
A gui/us_experiment_gui.cpp
A gui/us_experiment_gui.h
A gui/us_get_run.cpp
A gui/us_get_run.h
A gui/us_intensity.cpp
A gui/us_intensity.h
A gui/us_select_triples.cpp
A gui/us_select_triples.h
A gui/us_selectbox.cpp
A gui/us_selectbox.h
M programs/us_autoflow_analysis/CMakeLists.txt
M programs/us_autoflow_analysis/us_autoflow_analysis.h
M programs/us_autoflow_analysis/us_autoflow_analysis.pro
M programs/us_com_project/CMakeLists.txt
M programs/us_com_project/us_com_project.pro
M programs/us_com_project/us_com_project_gui.h
M programs/us_com_project_academic/CMakeLists.txt
M programs/us_com_project_academic/us_com_project_academic.pro
M programs/us_convert/CMakeLists.txt
R programs/us_convert/us_convert.cpp
R programs/us_convert/us_convert.h
M programs/us_convert/us_convert.pro
R programs/us_convert/us_convert_gui.cpp
R programs/us_convert/us_convert_gui.h
R programs/us_convert/us_convertio.cpp
R programs/us_convert/us_convertio.h
R programs/us_convert/us_experiment.cpp
R programs/us_convert/us_experiment.h
R programs/us_convert/us_experiment_gui.cpp
R programs/us_convert/us_experiment_gui.h
R programs/us_convert/us_get_run.cpp
R programs/us_convert/us_get_run.h
R programs/us_convert/us_intensity.cpp
R programs/us_convert/us_intensity.h
R programs/us_convert/us_select_triples.cpp
R programs/us_convert/us_select_triples.h
R programs/us_convert/us_selectbox.cpp
R programs/us_convert/us_selectbox.h
M programs/us_experiment/CMakeLists.txt
M programs/us_experiment/us_experiment.pro
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_fematch/CMakeLists.txt
M programs/us_fematch/us_fematch.pro
M programs/us_legacy_converter/CMakeLists.txt
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
M programs/us_legacy_converter/us_legacy_converter.pro
M programs/us_protocol_dev/CMakeLists.txt
M programs/us_protocol_dev/us_protocol_dev.pro
M programs/us_protocol_dev/us_protocol_dev_gui.h
M programs/us_query_rmsd/CMakeLists.txt
M programs/us_query_rmsd/us_query_rmsd.pro
M programs/us_reporter_gmp/CMakeLists.txt
M programs/us_reporter_gmp/us_reporter_gmp.pro
M programs/us_xpn_viewer/us_xpn_viewer.pro
M utils/CMakeLists.txt
M utils/libus_utils.pro
A utils/us_convert.cpp
A utils/us_convert.h
A utils/us_convertio.cpp
A utils/us_convertio.h
A utils/us_experiment.cpp
A utils/us_experiment.h
Log Message:
-----------
Move general code used by multiple programs to libraries. Update CMakeLists.txt and *.pro files accordingly
Commit: 22b358bc7c50111c979137831392022b5920ece3
https://github.com/ehb54/ultrascan3/commit/22b358bc7c50111c979137831392022b5920ece3
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-20 (Thu, 20 Nov 2025)
Changed paths:
M test-docker.sh
Log Message:
-----------
- Add `US3_BUILD_PROGRAMS` flag to disable program builds in docker tests
- Redirect build output to `tee build.log` for better log visibility
- Ensure consistent newline at end of script
Commit: eed16179a8828fcdad33d10893011f872744078a
https://github.com/ehb54/ultrascan3/commit/eed16179a8828fcdad33d10893011f872744078a
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-20 (Thu, 20 Nov 2025)
Changed paths:
M CMakeLists.txt
M programs/us_fit_meniscus/CMakeLists.txt
M utils/CMakeLists.txt
Log Message:
-----------
- Fix variable mismatches in `BUILD_TESTING` conditions across CMakeLists.
- Disable `US3_BUILD_PROGRAMS` in `TEST` profile to align with expected behavior.
- Update logging for `BUILD_TESTING` status in CMake output.
- Remove redundant `US3_BUILD_TESTS` conditions for cleaner logic.
Commit: 342c572ec5c13739d56e6a45922eeddd2168d777
https://github.com/ehb54/ultrascan3/commit/342c572ec5c13739d56e6a45922eeddd2168d777
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-20 (Thu, 20 Nov 2025)
Changed paths:
M gui/us_convert_gui.cpp
M programs/us_legacy_converter/us_legacy_converter.cpp
M test-docker.sh
Log Message:
-----------
Fix typos
Commit: 8ec56186a4b601669d87ed939d3ac1f4e7057561
https://github.com/ehb54/ultrascan3/commit/8ec56186a4b601669d87ed939d3ac1f4e7057561
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-20 (Thu, 20 Nov 2025)
Changed paths:
M utils/us_convert.cpp
M utils/us_convert.h
Log Message:
-----------
- Apply `const QString&` to parameters in `readLegacyData` for efficiency
- Remove unused `mixed_type` variable and redundant assignment of `runType`
- Clean up debug statements for clearer logging
Commit: 5cf42202af6d7f5544a2cf1111d44f5f1a232777
https://github.com/ehb54/ultrascan3/commit/5cf42202af6d7f5544a2cf1111d44f5f1a232777
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-20 (Thu, 20 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Refactor CodeQL analysis workflow conditions
Removed specific file paths from pull request triggers and updated conditions for CodeQL analysis steps.
Commit: 3f486acaa2a2e5b708f257acf949e90d1b042bbc
https://github.com/ehb54/ultrascan3/commit/3f486acaa2a2e5b708f257acf949e90d1b042bbc
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-20 (Thu, 20 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Rename analysis job for GUI programs
Commit: a81ad04f934cbf1c4a0983859a74441fa4aaae0e
https://github.com/ehb54/ultrascan3/commit/a81ad04f934cbf1c4a0983859a74441fa4aaae0e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-20 (Thu, 20 Nov 2025)
Changed paths:
M gui/us_combined_plots_parms_gui.cpp
M programs/us_ddist_combine/us_ddist_combine.cpp
Log Message:
-----------
[remove x_min/max from global settings]GMP 6. REPORT -- for runs based on Custom-Grid model, use correct ranges for ind. and combined distributions...
Commit: 1e81209448574c4a6b3bf57955a2aed48a70cca2
https://github.com/ehb54/ultrascan3/commit/1e81209448574c4a6b3bf57955a2aed48a70cca2
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-11-20 (Thu, 20 Nov 2025)
Changed paths:
M CMakeLists.txt
M gui/libus_gui.pro
A gui/us_convert_gui.cpp
A gui/us_convert_gui.h
A gui/us_experiment_gui.cpp
A gui/us_experiment_gui.h
A gui/us_get_run.cpp
A gui/us_get_run.h
A gui/us_intensity.cpp
A gui/us_intensity.h
A gui/us_select_triples.cpp
A gui/us_select_triples.h
A gui/us_selectbox.cpp
A gui/us_selectbox.h
M programs/us_autoflow_analysis/CMakeLists.txt
M programs/us_autoflow_analysis/us_autoflow_analysis.h
M programs/us_autoflow_analysis/us_autoflow_analysis.pro
M programs/us_com_project/CMakeLists.txt
M programs/us_com_project/us_com_project.pro
M programs/us_com_project/us_com_project_gui.h
M programs/us_com_project_academic/CMakeLists.txt
M programs/us_com_project_academic/us_com_project_academic.pro
M programs/us_convert/CMakeLists.txt
R programs/us_convert/us_convert.cpp
R programs/us_convert/us_convert.h
M programs/us_convert/us_convert.pro
R programs/us_convert/us_convert_gui.cpp
R programs/us_convert/us_convert_gui.h
R programs/us_convert/us_convertio.cpp
R programs/us_convert/us_convertio.h
R programs/us_convert/us_experiment.cpp
R programs/us_convert/us_experiment.h
R programs/us_convert/us_experiment_gui.cpp
R programs/us_convert/us_experiment_gui.h
R programs/us_convert/us_get_run.cpp
R programs/us_convert/us_get_run.h
R programs/us_convert/us_intensity.cpp
R programs/us_convert/us_intensity.h
R programs/us_convert/us_select_triples.cpp
R programs/us_convert/us_select_triples.h
R programs/us_convert/us_selectbox.cpp
R programs/us_convert/us_selectbox.h
M programs/us_experiment/CMakeLists.txt
M programs/us_experiment/us_experiment.pro
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_fematch/CMakeLists.txt
M programs/us_fematch/us_fematch.pro
M programs/us_fit_meniscus/CMakeLists.txt
M programs/us_legacy_converter/CMakeLists.txt
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
M programs/us_legacy_converter/us_legacy_converter.pro
M programs/us_protocol_dev/CMakeLists.txt
M programs/us_protocol_dev/us_protocol_dev.pro
M programs/us_protocol_dev/us_protocol_dev_gui.h
M programs/us_query_rmsd/CMakeLists.txt
M programs/us_query_rmsd/us_query_rmsd.pro
M programs/us_reporter_gmp/CMakeLists.txt
M programs/us_reporter_gmp/us_reporter_gmp.pro
M programs/us_xpn_viewer/us_xpn_viewer.pro
M test-docker.sh
M utils/CMakeLists.txt
M utils/libus_utils.pro
A utils/us_convert.cpp
A utils/us_convert.h
A utils/us_convertio.cpp
A utils/us_convertio.h
A utils/us_experiment.cpp
A utils/us_experiment.h
Log Message:
-----------
Merge pull request #323 from ehb54/lukas/cmake-fixes
Fix failing Unittests and cmake build
Commit: 9317a33dcf14a74c7ca9e145158c539dc3c10be3
https://github.com/ehb54/ultrascan3/commit/9317a33dcf14a74c7ca9e145158c539dc3c10be3
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-20 (Thu, 20 Nov 2025)
Changed paths:
M CMakeLists.txt
M gui/libus_gui.pro
A gui/us_convert_gui.cpp
A gui/us_convert_gui.h
A gui/us_experiment_gui.cpp
A gui/us_experiment_gui.h
A gui/us_get_run.cpp
A gui/us_get_run.h
A gui/us_intensity.cpp
A gui/us_intensity.h
A gui/us_select_triples.cpp
A gui/us_select_triples.h
A gui/us_selectbox.cpp
A gui/us_selectbox.h
M programs/us_autoflow_analysis/CMakeLists.txt
M programs/us_autoflow_analysis/us_autoflow_analysis.h
M programs/us_autoflow_analysis/us_autoflow_analysis.pro
M programs/us_com_project/CMakeLists.txt
M programs/us_com_project/us_com_project.pro
M programs/us_com_project/us_com_project_gui.h
M programs/us_com_project_academic/CMakeLists.txt
M programs/us_com_project_academic/us_com_project_academic.pro
M programs/us_convert/CMakeLists.txt
R programs/us_convert/us_convert.cpp
R programs/us_convert/us_convert.h
M programs/us_convert/us_convert.pro
R programs/us_convert/us_convert_gui.cpp
R programs/us_convert/us_convert_gui.h
R programs/us_convert/us_convertio.cpp
R programs/us_convert/us_convertio.h
R programs/us_convert/us_experiment.cpp
R programs/us_convert/us_experiment.h
R programs/us_convert/us_experiment_gui.cpp
R programs/us_convert/us_experiment_gui.h
R programs/us_convert/us_get_run.cpp
R programs/us_convert/us_get_run.h
R programs/us_convert/us_intensity.cpp
R programs/us_convert/us_intensity.h
R programs/us_convert/us_select_triples.cpp
R programs/us_convert/us_select_triples.h
R programs/us_convert/us_selectbox.cpp
R programs/us_convert/us_selectbox.h
M programs/us_edit/us_edit.cpp
M programs/us_experiment/CMakeLists.txt
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment.pro
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_fematch/CMakeLists.txt
M programs/us_fematch/us_fematch.pro
M programs/us_fit_meniscus/CMakeLists.txt
M programs/us_legacy_converter/CMakeLists.txt
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
M programs/us_legacy_converter/us_legacy_converter.pro
M programs/us_protocol_dev/CMakeLists.txt
M programs/us_protocol_dev/us_protocol_dev.pro
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
M programs/us_query_rmsd/CMakeLists.txt
M programs/us_query_rmsd/us_query_rmsd.pro
M programs/us_reporter_gmp/CMakeLists.txt
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.pro
M programs/us_xpn_viewer/us_xpn_viewer.pro
M test-docker.sh
M utils/CMakeLists.txt
M utils/libus_utils.pro
A utils/us_convert.cpp
A utils/us_convert.h
A utils/us_convertio.cpp
A utils/us_convertio.h
A utils/us_experiment.cpp
A utils/us_experiment.h
Log Message:
-----------
Merge pull request #325 from ehb54/main
Include main into alexey-dev-issue651
Commit: 02ab6c663335530dbf4295161c2f68c1043b3874
https://github.com/ehb54/ultrascan3/commit/02ab6c663335530dbf4295161c2f68c1043b3874
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M CMakeLists.txt
M gui/libus_gui.pro
A gui/us_convert_gui.cpp
A gui/us_convert_gui.h
A gui/us_experiment_gui.cpp
A gui/us_experiment_gui.h
A gui/us_get_run.cpp
A gui/us_get_run.h
A gui/us_intensity.cpp
A gui/us_intensity.h
A gui/us_select_triples.cpp
A gui/us_select_triples.h
A gui/us_selectbox.cpp
A gui/us_selectbox.h
M programs/us_autoflow_analysis/CMakeLists.txt
M programs/us_autoflow_analysis/us_autoflow_analysis.h
M programs/us_autoflow_analysis/us_autoflow_analysis.pro
M programs/us_com_project/CMakeLists.txt
M programs/us_com_project/us_com_project.pro
M programs/us_com_project/us_com_project_gui.h
M programs/us_com_project_academic/CMakeLists.txt
M programs/us_com_project_academic/us_com_project_academic.pro
M programs/us_convert/CMakeLists.txt
R programs/us_convert/us_convert.cpp
R programs/us_convert/us_convert.h
M programs/us_convert/us_convert.pro
R programs/us_convert/us_convert_gui.cpp
R programs/us_convert/us_convert_gui.h
R programs/us_convert/us_convertio.cpp
R programs/us_convert/us_convertio.h
R programs/us_convert/us_experiment.cpp
R programs/us_convert/us_experiment.h
R programs/us_convert/us_experiment_gui.cpp
R programs/us_convert/us_experiment_gui.h
R programs/us_convert/us_get_run.cpp
R programs/us_convert/us_get_run.h
R programs/us_convert/us_intensity.cpp
R programs/us_convert/us_intensity.h
R programs/us_convert/us_select_triples.cpp
R programs/us_convert/us_select_triples.h
R programs/us_convert/us_selectbox.cpp
R programs/us_convert/us_selectbox.h
M programs/us_edit/us_edit.cpp
M programs/us_experiment/CMakeLists.txt
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment.pro
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_fematch/CMakeLists.txt
M programs/us_fematch/us_fematch.pro
M programs/us_fit_meniscus/CMakeLists.txt
M programs/us_legacy_converter/CMakeLists.txt
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
M programs/us_legacy_converter/us_legacy_converter.pro
M programs/us_protocol_dev/CMakeLists.txt
M programs/us_protocol_dev/us_protocol_dev.pro
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
M programs/us_query_rmsd/CMakeLists.txt
M programs/us_query_rmsd/us_query_rmsd.pro
M programs/us_reporter_gmp/CMakeLists.txt
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.pro
M programs/us_xpn_viewer/us_xpn_viewer.pro
M test-docker.sh
M utils/CMakeLists.txt
M utils/libus_utils.pro
A utils/us_convert.cpp
A utils/us_convert.h
A utils/us_convertio.cpp
A utils/us_convertio.h
A utils/us_experiment.cpp
A utils/us_experiment.h
Log Message:
-----------
Merge branch 'main' into lukas/gh_actions
Commit: 013afa9051723a54ff17a3431895f0e6aa65eebc
https://github.com/ehb54/ultrascan3/commit/013afa9051723a54ff17a3431895f0e6aa65eebc
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
M .github/workflows/doc-build.yml
M .github/workflows/static-analysis.yml
Log Message:
-----------
Refactor GitHub Actions workflows to enhance modularity and efficiency
- Introduce `changed-files` job to conditionally trigger workflows based on file changes.
- Add status-checking jobs for Documentation, CodeQL analysis, and Static Analysis builds.
- Improve concurrency management and file fetch depth.
- Optimize CI Docker containers and cleanup processes.
- Streamline conditional checks and matrix configurations.
Commit: 2574c202cf8e3a25d12efaf4dd85cbfcf4cce419
https://github.com/ehb54/ultrascan3/commit/2574c202cf8e3a25d12efaf4dd85cbfcf4cce419
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
A .github/workflows/unit-tests-v2.yml
Log Message:
-----------
Add `unit-tests-v2.yml` GitHub Actions workflow
- Introduce a new workflow for unit testing with support for configurable test filters and debug mode.
- Add a `changed-files` job to detect relevant file modifications and conditionally trigger tests.
- Implement improved concurrency management and result-checking mechanisms.
- Streamline test setup, build process, and log management for enhanced clarity and efficiency.
- Enable artifact uploads for detailed test results and logs.
Commit: e2a9b2acaeeeac868cf1d55f459225e683e37d11
https://github.com/ehb54/ultrascan3/commit/e2a9b2acaeeeac868cf1d55f459225e683e37d11
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M .github/workflows/static-analysis.yml
M .github/workflows/unit-tests-v2.yml
Log Message:
-----------
Normalize glob patterns in GitHub Actions workflows
Commit: 037064b1d8968578fcb9a42ba07e275c96b38a8c
https://github.com/ehb54/ultrascan3/commit/037064b1d8968578fcb9a42ba07e275c96b38a8c
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M .github/workflows/unit-tests-v2.yml
Log Message:
-----------
Fix incorrect `CMAKE_MODULE_PATH` to use absolute path in `unit-tests-v2.yml` workflow
Commit: 4c0538dff646603c4258628a076f9807a29af7c3
https://github.com/ehb54/ultrascan3/commit/4c0538dff646603c4258628a076f9807a29af7c3
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M .github/workflows/unit-tests.yml
Log Message:
-----------
Enhance `unit-tests.yml` workflow with dynamic file change detection and improved concurrency management
- Add `changed-files` job to detect relevant modifications and conditionally trigger unit tests.
- Introduce concurrency control to prevent duplicate runs.
- Expand artifacts to include additional logs for better debugging.
- Add status-checking job to validate unit testing outcomes.
- Refactor workflow for clarity and streamlined test execution.
Commit: 12e9e1fd701da2b201e7d47b3cb642812813e4e7
https://github.com/ehb54/ultrascan3/commit/12e9e1fd701da2b201e7d47b3cb642812813e4e7
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
Enhance `static-analysis.yml` workflow with CPP file-specific change detection
- Add outputs and environment variables to track `.cpp` and `.h` file changes.
- Update `changed-files` step to simplify logic and rely on filtered outputs.
- Streamline file detection for first commits and pull requests.
Commit: e94063c15730a822262820f18c468a429ac4c374
https://github.com/ehb54/ultrascan3/commit/e94063c15730a822262820f18c468a429ac4c374
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M .github/workflows/unit-tests.yml
Log Message:
-----------
Normalize glob pattern syntax in `unit-tests.yml` workflow
Commit: 158b855316998f18924177b91ad5cb81e696ad53
https://github.com/ehb54/ultrascan3/commit/158b855316998f18924177b91ad5cb81e696ad53
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
Update static-analysis workflow to use latest `us3comp` container image
Commit: e90b563926591d47a67070f0413d64f995ed47a0
https://github.com/ehb54/ultrascan3/commit/e90b563926591d47a67070f0413d64f995ed47a0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
Log Message:
-----------
GMP 6. REPORT -- [single-point data] add debug stats...
Commit: fe4173f931d8dff6fa90b5ac68584d7288da6e44
https://github.com/ehb54/ultrascan3/commit/fe4173f931d8dff6fa90b5ac68584d7288da6e44
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
Log Message:
-----------
[1]GMP 6. REPORT -- [single-point data] add debug stats...
Commit: dc717ab5d9685a48525ee315d3f4bffe9dec806e
https://github.com/ehb54/ultrascan3/commit/dc717ab5d9685a48525ee315d3f4bffe9dec806e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
Log Message:
-----------
[2]GMP 6. REPORT -- [single-point data] add debug stats...
Commit: f27c85345e2838e5372ad69873016bc574f4b005
https://github.com/ehb54/ultrascan3/commit/f27c85345e2838e5372ad69873016bc574f4b005
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
Log Message:
-----------
[3]GMP 6. REPORT -- [single-point data] add debug stats...
Commit: 48cb1fa84db559ebdc58a2b9c4b7e7c00ff9cb5b
https://github.com/ehb54/ultrascan3/commit/48cb1fa84db559ebdc58a2b9c4b7e7c00ff9cb5b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
Log Message:
-----------
[4]GMP 6. REPORT -- [single-point data] add debug stats...
Commit: 74a2a0309cbf2e06fe514e02ea2cc40874cf4f25
https://github.com/ehb54/ultrascan3/commit/74a2a0309cbf2e06fe514e02ea2cc40874cf4f25
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
Log Message:
-----------
PROT_DEV: run_selector -- order in reverse chronological order...
Commit: 350edcd3194656d020a571d45cbe1dd872d041e2
https://github.com/ehb54/ultrascan3/commit/350edcd3194656d020a571d45cbe1dd872d041e2
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M gui/us_combined_plots_parms_gui.cpp
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_ddist_combine.h
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
Merge pull request #322 from ehb54/alexey-dev-issue651
Alexey dev issue651: Ind. & Combined Plots in GMP Rpeorts: CG-model-based runs (ranges), Plot Aspect Ratios, "Combined Plots" section title
Commit: 05f602b3975c9e9cfbbeb21813b637046978d65a
https://github.com/ehb54/ultrascan3/commit/05f602b3975c9e9cfbbeb21813b637046978d65a
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP 6. REPORT -- generate correct build number in the header...
Commit: e1ce700f61527eedba262f237e41dbcc16de6de7
https://github.com/ehb54/ultrascan3/commit/e1ce700f61527eedba262f237e41dbcc16de6de7
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-22 (Sat, 22 Nov 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
Update file patterns for static analysis
Commit: aebbdda924bca0630a6b1b50f5110f340c8804aa
https://github.com/ehb54/ultrascan3/commit/aebbdda924bca0630a6b1b50f5110f340c8804aa
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-22 (Sat, 22 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Update CodeQL workflow to ignore specific files
Ignore changes in us_mpi_analysis directory during file checks and update build commands.
Commit: a4a655d619279b7bb59e01ee82fce46e875eebca
https://github.com/ehb54/ultrascan3/commit/a4a655d619279b7bb59e01ee82fce46e875eebca
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-22 (Sat, 22 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Exclude us_mpi_analysis from CodeQL analysis gui
Commit: 14ba4d63b16861ed659ae0c204b0ee3f54589432
https://github.com/ehb54/ultrascan3/commit/14ba4d63b16861ed659ae0c204b0ee3f54589432
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-22 (Sat, 22 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Fix syntax for exclusion in CodeQL workflow
Commit: 770769aa570aae22f64b5b817de2320ab1b070e3
https://github.com/ehb54/ultrascan3/commit/770769aa570aae22f64b5b817de2320ab1b070e3
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-11-22 (Sat, 22 Nov 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
Merge pull request #326 from ehb54/alexey-dev-issue631
GMP 6. REPORT -- generate correct build number in the header...
Commit: 3f56d29bde0ad6a71c607a8bcfb56bc7caca4961
https://github.com/ehb54/ultrascan3/commit/3f56d29bde0ad6a71c607a8bcfb56bc7caca4961
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-11-24 (Mon, 24 Nov 2025)
Changed paths:
M gui/us_combined_plots_parms_gui.cpp
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_ddist_combine.h
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
Merge branch 'main' into lukas/gh_actions
Commit: c088a80976663c552cffec04fcb0cfe084922560
https://github.com/ehb54/ultrascan3/commit/c088a80976663c552cffec04fcb0cfe084922560
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-11-24 (Mon, 24 Nov 2025)
Changed paths:
R .github/workflows/.yamllint.yml
M .github/workflows/codeql-analysis.yml
M .github/workflows/doc-build.yml
M .github/workflows/static-analysis.yml
A .github/workflows/unit-tests-v2.yml
M .github/workflows/unit-tests.yml
A admin/linting/cmake/.cmake-format.yaml
A admin/linting/cmake/README.md
A admin/linting/yaml/.yamllint.yml
Log Message:
-----------
Merge pull request #321 from ehb54/lukas/gh_actions
Lukas/gh actions
Commit: 70cf969d22c8ecb1892bcb7a3301d101bca7aa55
https://github.com/ehb54/ultrascan3/commit/70cf969d22c8ecb1892bcb7a3301d101bca7aa55
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-24 (Mon, 24 Nov 2025)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
Log Message:
-----------
GMP 5. ANALYSIS -- added more processEvens() for progressDialogs in (1) FITMEN_AUTO stage, and (2) View Overlay while simulating data -- may have caused stoppage in updating main GUI after completion of these stages...
Commit: 815465ed2b2679fbcf4cda7c076dda6fdc89f322
https://github.com/ehb54/ultrascan3/commit/815465ed2b2679fbcf4cda7c076dda6fdc89f322
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-11-24 (Mon, 24 Nov 2025)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
Log Message:
-----------
Merge pull request #327 from ehb54/alexey-dev-issue657
GMP 5. ANALYSIS -- added more processEvens() for progressDialogs in FITME_AUTO & View Overlay
Commit: a0665e28e96ec99c45bc50f07334caa76158c973
https://github.com/ehb54/ultrascan3/commit/a0665e28e96ec99c45bc50f07334caa76158c973
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-12-01 (Mon, 01 Dec 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
A .github/workflows/doc-build.yml
M .github/workflows/static-analysis.yml
A .github/workflows/unit-tests-v2.yml
M .github/workflows/unit-tests.yml
M CMakeLists.txt
M admin/codeql/docker/local.pri.gui
M admin/codeql/docker/local.pri.mpi
M admin/codeql/docker/local.pri.somo
A admin/linting/cmake/.cmake-format.yaml
A admin/linting/cmake/README.md
A admin/linting/yaml/.yamllint.yml
M gui/libus_gui.pro
M gui/us_combined_plots_parms_gui.cpp
A gui/us_convert_gui.cpp
A gui/us_convert_gui.h
A gui/us_experiment_gui.cpp
A gui/us_experiment_gui.h
A gui/us_get_run.cpp
A gui/us_get_run.h
A gui/us_intensity.cpp
A gui/us_intensity.h
M gui/us_plot.cpp
M gui/us_plot.h
A gui/us_select_triples.cpp
A gui/us_select_triples.h
A gui/us_selectbox.cpp
A gui/us_selectbox.h
M programs/us_autoflow_analysis/CMakeLists.txt
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.h
M programs/us_autoflow_analysis/us_autoflow_analysis.pro
M programs/us_com_project/CMakeLists.txt
M programs/us_com_project/us_com_project.pro
M programs/us_com_project/us_com_project_gui.h
M programs/us_com_project_academic/CMakeLists.txt
M programs/us_com_project_academic/us_com_project_academic.pro
M programs/us_convert/CMakeLists.txt
R programs/us_convert/us_convert.cpp
R programs/us_convert/us_convert.h
M programs/us_convert/us_convert.pro
R programs/us_convert/us_convert_gui.cpp
R programs/us_convert/us_convert_gui.h
R programs/us_convert/us_convertio.cpp
R programs/us_convert/us_convertio.h
R programs/us_convert/us_experiment.cpp
R programs/us_convert/us_experiment.h
R programs/us_convert/us_experiment_gui.cpp
R programs/us_convert/us_experiment_gui.h
R programs/us_convert/us_get_run.cpp
R programs/us_convert/us_get_run.h
R programs/us_convert/us_intensity.cpp
R programs/us_convert/us_intensity.h
R programs/us_convert/us_select_triples.cpp
R programs/us_convert/us_select_triples.h
R programs/us_convert/us_selectbox.cpp
R programs/us_convert/us_selectbox.h
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_ddist_combine.h
M programs/us_edit/us_edit.cpp
M programs/us_experiment/CMakeLists.txt
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment.pro
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_fematch/CMakeLists.txt
M programs/us_fematch/us_fematch.pro
M programs/us_fit_meniscus/CMakeLists.txt
M programs/us_legacy_converter/CMakeLists.txt
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
M programs/us_legacy_converter/us_legacy_converter.pro
M programs/us_protocol_dev/CMakeLists.txt
M programs/us_protocol_dev/us_protocol_dev.pro
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
M programs/us_query_rmsd/CMakeLists.txt
M programs/us_query_rmsd/us_query_rmsd.pro
M programs/us_reporter_gmp/CMakeLists.txt
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_reporter_gmp/us_reporter_gmp.pro
M programs/us_xpn_viewer/us_xpn_viewer.pro
M test-docker.sh
M utils/CMakeLists.txt
M utils/libus_utils.pro
A utils/us_convert.cpp
A utils/us_convert.h
A utils/us_convertio.cpp
A utils/us_convertio.h
A utils/us_experiment.cpp
A utils/us_experiment.h
M utils/us_run_protocol.h
Log Message:
-----------
Merge branch 'main' into ehb54-issue-634-a
Compare: https://github.com/ehb54/ultrascan3/compare/572ca3dc893c...a0665e28e96e
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