[us-commits] [ehb54/ultrascan3] ea0b94: 8. AProfile: Report -- a sublte bug fixed for corr...
Lukas Dobler
noreply at github.com
Thu Dec 11 09:20:51 MST 2025
Branch: refs/heads/lukas/us_xpn_viewer_timestate
Home: https://github.com/ehb54/ultrascan3
Commit: ea0b94a1f952fafffb14e048ef59ac09de4dae31
https://github.com/ehb54/ultrascan3/commit/ea0b94a1f952fafffb14e048ef59ac09de4dae31
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-07-09 (Wed, 09 Jul 2025)
Changed paths:
M gui/us_report_gui.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_anapro_utils.cpp
Log Message:
-----------
8. AProfile: Report -- a sublte bug fixed for correctly inheriting exp. duration timefrom the main protocol into AProfile's->reports when setting protocol from scratch for the first time; also make exp. dur. fileds read-only ...
Commit: 5ea9fa1c7dd4d0508386d70cc3f96d2f33275adf
https://github.com/ehb54/ultrascan3/commit/5ea9fa1c7dd4d0508386d70cc3f96d2f33275adf
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-07-10 (Thu, 10 Jul 2025)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_experiment/us_proto_ranges.cpp
Log Message:
-----------
GMP | R&D -- replace all QwtCounters with QSpinBoxes, to better control and validate inputs ...
Commit: f8117c1eed92f953f483005cb49d40818b971cc9
https://github.com/ehb54/ultrascan3/commit/f8117c1eed92f953f483005cb49d40818b971cc9
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-07-28 (Mon, 28 Jul 2025)
Changed paths:
M gui/us_widgets.cpp
M gui/us_widgets_dialog.cpp
Log Message:
-----------
GMP | R&D -- change ranges for dd-hh-mm-ss QSpinBoxes in 1. EXP.: 3. Speeds...
Commit: 0fc8fc48c10614b999f6720cdcc5ffeb354dd28f
https://github.com/ehb54/ultrascan3/commit/0fc8fc48c10614b999f6720cdcc5ffeb354dd28f
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-08-04 (Mon, 04 Aug 2025)
Changed paths:
M gui/us_analyte_gui.cpp
M gui/us_data_loader.cpp
M gui/us_load_auc.cpp
M gui/us_loadable_noise.cpp
M gui/us_model_loader.cpp
M gui/us_noise_loader.cpp
M gui/us_run_details2.cpp
M gui/us_tmst_plot.cpp
M gui/us_window_message.cpp
M programs/us_2dsa/us_2dsa.cpp
M programs/us_astfem_sim/us_clipdata.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_combine_models/us_combine_models.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_get_run.cpp
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_select_rundd.cpp
M programs/us_density_match/us_density_match.cpp
M programs/us_edit/us_edit.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_export_legacy/us_export.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_fit_meniscus/us_fit_meniscus.cpp
M programs/us_ga_init/us_solutedata.cpp
M programs/us_integral/us_integral.cpp
M programs/us_manage_data/us_data_model.cpp
M programs/us_manage_data/us_data_tree.cpp
M programs/us_manage_data/us_manage_data.cpp
M programs/us_mpi_analysis/2dsa_master.cpp
M programs/us_mpi_analysis/ga_worker.cpp
M programs/us_mpi_analysis/pcsa_master.cpp
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
M programs/us_mwl_spectra/us_mwl_spectra.cpp
M programs/us_mwlr_viewer/us_mwl_run.cpp
M programs/us_mwlr_viewer/us_mwlr_viewer.cpp
M programs/us_pcsa/us_adv_analysis_pc.cpp
M programs/us_pcsa/us_analysis_control_pc.cpp
M programs/us_pcsa/us_pcsa.cpp
M programs/us_pcsa/us_pcsa_process.cpp
M programs/us_pcsa/us_rpscan.cpp
M programs/us_rasmol_control/us_rasmol_control.cpp
M programs/us_reporter/us_reporter.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_vhw_combine/us_vhw_combine.cpp
M programs/us_vhw_enhanced/us_distrib_plot.cpp
M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
M programs/us_xpn_viewer/us_xpn_run_auc.cpp
M programs/us_xpn_viewer/us_xpn_run_raw.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
issue 533 : convert QString::sprintf to asprintf in gui & programs
Commit: 54079b9265341294439c9ae4167fc5a6cadad909
https://github.com/ehb54/ultrascan3/commit/54079b9265341294439c9ae4167fc5a6cadad909
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-08-04 (Mon, 04 Aug 2025)
Changed paths:
M gui/us_extinctfitter_gui.cpp
M gui/us_minimize.cpp
M programs/us_2dsa/us_2dsa.cpp
M programs/us_astfem_sim/us_clipdata.cpp
M programs/us_config/us_color.cpp
M programs/us_ga_init/us_solutedata.cpp
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_spectrum/us_spectrum.cpp
Log Message:
-----------
issue 533 : convert QString - varname.sprintf to varname = asprintf in gui & programs
Commit: b31ecaceddee2236fab9e0fb4465885db648a952
https://github.com/ehb54/ultrascan3/commit/b31ecaceddee2236fab9e0fb4465885db648a952
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-08-04 (Mon, 04 Aug 2025)
Changed paths:
M gui/us_analysis_base2.cpp
M gui/us_analyte_gui.cpp
M gui/us_extinctfitter_gui.cpp
M gui/us_minimize.cpp
M gui/us_run_details2.cpp
M programs/us_2dsa/us_2dsa.cpp
M programs/us_edit/us_edit.cpp
M programs/us_equiltime/us_equiltime.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_ga_init/us_solutedata.cpp
M programs/us_mpi_analysis/dmga_worker.cpp
M programs/us_mpi_analysis/ga_master.cpp
M programs/us_mpi_analysis/ga_worker.cpp
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_mpi_analysis/us_mpi_parse.cpp
M programs/us_spectrum/us_spectrum.cpp
M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
Log Message:
-----------
issue 533 : convert QString - the last of sprintf in gui & programs
Commit: 3fd01182e1ee82fcbf4e2dfc5710d5bf9bd99207
https://github.com/ehb54/ultrascan3/commit/3fd01182e1ee82fcbf4e2dfc5710d5bf9bd99207
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-08-04 (Mon, 04 Aug 2025)
Changed paths:
M programs/us_mpi_analysis/us_mpi_analysis.cpp
Log Message:
-----------
issue 533 : convert QString - the last of sprintf in gui & programs
Commit: 399d845e5667346225803b9ac45b753c7676e39d
https://github.com/ehb54/ultrascan3/commit/399d845e5667346225803b9ac45b753c7676e39d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-06 (Mon, 06 Oct 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M utils/us_run_protocol.h
Log Message:
-----------
GMP | R&D : dataDisk -- differentiate between RI-uploaded data to be intensity or pseudo-absorbance; act accordingly in 3. IMPORT; report in REPORT; ...
Commit: f924d79f3ecf67db15ced074ac2b50a4cafc9c72
https://github.com/ehb54/ultrascan3/commit/f924d79f3ecf67db15ced074ac2b50a4cafc9c72
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-06 (Mon, 06 Oct 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
[1] GMP | R&D : dataDisk -- differentiate between RI-uploaded data to be intensity or pseudo-absorbance; act accordingly in 3. IMPORT; report in REPORT; ...
Commit: a95afc6b2d4b4b118c7e84a6e1258fbf85076bf0
https://github.com/ehb54/ultrascan3/commit/a95afc6b2d4b4b118c7e84a6e1258fbf85076bf0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-06 (Mon, 06 Oct 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[2] GMP | R&D : dataDisk -- differentiate between RI-uploaded data to be intensity or pseudo-absorbance; act accordingly in 3. IMPORT; report in REPORT; ...
Commit: 8f9f1257b799c491fa5629c912071eabb435388f
https://github.com/ehb54/ultrascan3/commit/8f9f1257b799c491fa5629c912071eabb435388f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-06 (Mon, 06 Oct 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[3] GMP | R&D : dataDisk -- differentiate between RI-uploaded data to be intensity or pseudo-absorbance; act accordingly in 3. IMPORT; report in REPORT; ...
Commit: c3a261985e7e3979e7a9a11fcad5c851e739f41b
https://github.com/ehb54/ultrascan3/commit/c3a261985e7e3979e7a9a11fcad5c851e739f41b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-06 (Mon, 06 Oct 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
Us_Edit -- address non-hidden widgets in different constructors && scenarios ...
Commit: 3ad35587a1da03cc9926344ac40bb3d364a32d24
https://github.com/ehb54/ultrascan3/commit/3ad35587a1da03cc9926344ac40bb3d364a32d24
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-06 (Mon, 06 Oct 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[1]Us_Edit -- address non-hidden widgets in different constructors && scenarios ...
Commit: d6a4a469c86320252916565b3bd860c07cab4b1f
https://github.com/ehb54/ultrascan3/commit/d6a4a469c86320252916565b3bd860c07cab4b1f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-06 (Mon, 06 Oct 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[2]Us_Edit -- address non-hidden widgets in different constructors && scenarios ...
Commit: d3528cb233647917b4f76c9423f9deae1983f2bd
https://github.com/ehb54/ultrascan3/commit/d3528cb233647917b4f76c9423f9deae1983f2bd
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-06 (Mon, 06 Oct 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[3]Us_Edit -- address non-hidden widgets in different constructors && scenarios ...
Commit: 6dc67538e4d0efedcf66715d9f44781f3f8e27e4
https://github.com/ehb54/ultrascan3/commit/6dc67538e4d0efedcf66715d9f44781f3f8e27e4
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-08 (Wed, 08 Oct 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
A .github/workflows/static-analysis.yml
A .github/workflows/unit-tests.yml
M .gitignore
M CMakeLists.txt
A admin/cmake/FindQwt.cmake
A admin/cmake/us_version.h.in
A admin/test/docker/Dockerfile
R doc/manual/README
A doc/manual/README.md
A gui/CMakeLists.txt
M gui/us_abstractrotor_gui.cpp
M gui/us_buffer_gui.cpp
M gui/us_data_loader.cpp
M gui/us_failed_gmp_run_gui.cpp
M gui/us_load_auc.cpp
M gui/us_loadable_noise.cpp
R gui/us_model_editor.cpp
R gui/us_model_editor.h
M gui/us_model_gui.cpp
M gui/us_model_gui.h
M gui/us_model_loader.cpp
M gui/us_model_loader.h
M gui/us_noise_loader.cpp
M gui/us_noise_loader.h
M gui/us_project_gui.cpp
M gui/us_rotor_gui.cpp
M gui/us_solution_gui.cpp
A programs/CMakeLists.txt
M programs/us/us.cpp
M programs/us/us_win_data.cpp
M programs/us_2dsa/us_2dsa.cpp
M programs/us_astfem_sim/us_clipdata.cpp
A programs/us_autoflow_analysis/CMakeLists.txt
A programs/us_com_project/CMakeLists.txt
A programs/us_com_project_academic/CMakeLists.txt
M programs/us_config/us_database.cpp
M programs/us_config/us_xpnhost_db.cpp
M programs/us_config/us_xpnhost_db.h
M programs/us_convert/us_get_run.cpp
M programs/us_convert/us_select_triples.h
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_ddist_combine.h
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
A programs/us_experiment/CMakeLists.txt
M programs/us_experiment/us_experiment_gui_optima.cpp
A programs/us_fematch/CMakeLists.txt
M programs/us_fematch/us_fematch.cpp
A programs/us_fit_meniscus/CMakeLists.txt
M programs/us_ga_init/us_solutedata.cpp
M programs/us_integral/us_integral.cpp
M programs/us_manage_data/us_manage_data.cpp
A programs/us_mwl_species_fit/CMakeLists.txt
M programs/us_mwlr_viewer/us_mwl_run.cpp
M programs/us_pcsa/us_adv_analysis_pc.cpp
M programs/us_pcsa/us_analysis_control_pc.cpp
M programs/us_pcsa/us_mrecs_loader.cpp
M programs/us_pcsa/us_mrecs_loader.h
M programs/us_pcsa/us_pcsa.cpp
M programs/us_pcsa/us_pcsa_process.cpp
M programs/us_pcsa/us_rpscan.cpp
A programs/us_protocol_dev/CMakeLists.txt
A programs/us_query_rmsd/CMakeLists.txt
M programs/us_ramp/us_experiment_gui_ra.cpp
M programs/us_ramp/us_experiment_ra.cpp
M programs/us_ramp/us_experiment_ra.h
M programs/us_ramp/us_get_dbrun_ra.cpp
M programs/us_ramp/us_ramp_gui.cpp
M programs/us_reporter/us_reporter.cpp
A programs/us_reporter_gmp/CMakeLists.txt
M programs/us_xpn_viewer/us_xpn_run_auc.cpp
M programs/us_xpn_viewer/us_xpn_run_raw.cpp
A qwtplot3d/CMakeLists.txt
A test-docker.sh
A test/README
A test/common/qt_test_base.cpp
A test/common/qt_test_base.h
M test/utils/CMakeLists.txt
A test/utils/mock/mock_us_db2.h
A test/utils/test_mock_us_db2.cpp
A test/utils/test_us_ana_profile.cpp
A test/utils/test_us_analyte.cpp
A test/utils/test_us_astfem_math.cpp
A test/utils/test_us_buffer.cpp
A test/utils/test_us_crc.cpp
A test/utils/test_us_crypto.cpp
A test/utils/test_us_dataIO.cpp
M test/utils/test_us_datafiles.cpp
R test/utils/test_us_datafiles.h
A test/utils/test_us_db2.cpp
A test/utils/test_us_math2.cpp
A test/utils/test_us_matrix.cpp
A test/utils/test_us_memory.cpp
A test/utils/test_us_model.cpp
A test/utils/test_us_project.cpp
A test/utils/test_us_settings.cpp
R test/utils/test_us_simparams.cpp
R test/utils/test_us_simparams.h
A test/utils/test_us_simparms.cpp
A test/utils/test_us_stiffbase.cpp
A test/utils/test_us_time_state.cpp
A test/utils/test_us_timer.cpp
M test/utils/test_us_util.cpp
R test/utils/test_us_util.h
M test/utils/test_us_utils_main.cpp
A test/utils/test_us_vector.cpp
M us_somo/develop/include/us_zeno_cxx.h
M us_somo/develop/include/us_zeno_cxx_nf.h
M utils/CMakeLists.txt
A utils/ius_db2.h
M utils/us_ana_profile.cpp
M utils/us_analyte.cpp
M utils/us_analyte.h
M utils/us_astfem_rsa.cpp
M utils/us_buffer.cpp
M utils/us_buffer.h
M utils/us_cfa_data.cpp
M utils/us_dataIO.cpp
M utils/us_dataIO.h
M utils/us_db2.cpp
M utils/us_db2.h
M utils/us_eprofile.cpp
M utils/us_eprofile.h
M utils/us_hardware.cpp
M utils/us_hardware.h
M utils/us_lamm_astfvm.cpp
M utils/us_model.cpp
M utils/us_model.h
M utils/us_noise.cpp
M utils/us_noise.h
M utils/us_project.cpp
M utils/us_project.h
M utils/us_report.cpp
M utils/us_report.h
M utils/us_rotor.cpp
M utils/us_rotor.h
M utils/us_simparms.cpp
M utils/us_simparms.h
M utils/us_solution.cpp
M utils/us_solution.h
M utils/us_solution_vals.cpp
M utils/us_solution_vals.h
M utils/us_solve_sim.cpp
M utils/us_solve_sim.h
M utils/us_time_state.cpp
M utils/us_time_state.h
Log Message:
-----------
Merge pull request #269 from ehb54/master
Bring this branch to the latest master state
Commit: 72add4bba839a101a1cd875f5ff266fa9a91ccc9
https://github.com/ehb54/ultrascan3/commit/72add4bba839a101a1cd875f5ff266fa9a91ccc9
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-09 (Thu, 09 Oct 2025)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.h
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- honor AProfile's setting (channels selection) in MWL-species fit and normalization...
Commit: 8d1c1b4dcbf1b2c698688d5aad236d07578858d5
https://github.com/ehb54/ultrascan3/commit/8d1c1b4dcbf1b2c698688d5aad236d07578858d5
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-09 (Thu, 09 Oct 2025)
Changed paths:
M programs/us_fit_meniscus/us_fit_meniscus.cpp
Log Message:
-----------
GMP: 5. ANALYSIS: FITMEN -- disable update btn right after it's clicked...
Commit: bdba96a7dc97bb081790098cfb3d72bc10a32c18
https://github.com/ehb54/ultrascan3/commit/bdba96a7dc97bb081790098cfb3d72bc10a32c18
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-10 (Fri, 10 Oct 2025)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
Log Message:
-----------
Merge pull request #274 from ehb54/master
Bring to the current master state
Commit: 7c722f2fc3f2a82a9d5063fe4aecc128f465873d
https://github.com/ehb54/ultrascan3/commit/7c722f2fc3f2a82a9d5063fe4aecc128f465873d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-10 (Fri, 10 Oct 2025)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
Log Message:
-----------
Merge pull request #275 from ehb54/master
Bring to current master state
Commit: 60b0a4d52d2f57ac00206f32b33f7a01c943bf8e
https://github.com/ehb54/ultrascan3/commit/60b0a4d52d2f57ac00206f32b33f7a01c943bf8e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-10 (Fri, 10 Oct 2025)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
Log Message:
-----------
Merge pull request #276 from ehb54/master
Bring to current master
Commit: 236ab6f7717916a81de574fbe27299f18683a06c
https://github.com/ehb54/ultrascan3/commit/236ab6f7717916a81de574fbe27299f18683a06c
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-10-11 (Sat, 11 Oct 2025)
Changed paths:
M utils/us_buffer.cpp
Log Message:
-----------
Prevent early exit when saving a new buffer to database
Commit: 7388255d2bb422f8dca061365e459ac69e9267a4
https://github.com/ehb54/ultrascan3/commit/7388255d2bb422f8dca061365e459ac69e9267a4
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-10-11 (Sat, 11 Oct 2025)
Changed paths:
M gui/us_data_loader.cpp
Log Message:
-----------
Add null checks before adding child items to make static analysis happy
Commit: f3022f734322210c7a6d74c4d72f7d5871d7f9c2
https://github.com/ehb54/ultrascan3/commit/f3022f734322210c7a6d74c4d72f7d5871d7f9c2
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-10-11 (Sat, 11 Oct 2025)
Changed paths:
M gui/us_data_loader.cpp
Log Message:
-----------
Fix formatting in us_data_loader.cpp
Commit: 3edada407972c86d03c8f30822ebf6a3c1166357
https://github.com/ehb54/ultrascan3/commit/3edada407972c86d03c8f30822ebf6a3c1166357
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-10-13 (Mon, 13 Oct 2025)
Changed paths:
M gui/CMakeLists.txt
Log Message:
-----------
Include *.ui and *.qrc in gui build to ensure all resources and forms are available
Commit: 427e601f770f5eb39efb249bca9eb81b557561ae
https://github.com/ehb54/ultrascan3/commit/427e601f770f5eb39efb249bca9eb81b557561ae
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-10-13 (Mon, 13 Oct 2025)
Changed paths:
M utils/us_buffer.cpp
Log Message:
-----------
Clean up debug statements and enhance comments
Removed commented debug statements and added clarifying comments for variable assignments.
Commit: 0bd193389e5967e65d03d34b4ce6dcf0f3817f84
https://github.com/ehb54/ultrascan3/commit/0bd193389e5967e65d03d34b4ce6dcf0f3817f84
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-10-13 (Mon, 13 Oct 2025)
Changed paths:
M gui/CMakeLists.txt
Log Message:
-----------
Merge pull request #280 from ehb54/lukas/cmake-gui-resources
Include *.ui and *.qrc in us_gui library
Commit: 72ff576e489d378f03adc4296b68bd001b1c649e
https://github.com/ehb54/ultrascan3/commit/72ff576e489d378f03adc4296b68bd001b1c649e
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-10-13 (Mon, 13 Oct 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_edit/us_edit.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M utils/us_run_protocol.h
Log Message:
-----------
Merge pull request #273 from ehb54/alexey-dev-issue567
Alexey dev issue567: Deal with dataDisk Pseudoabsorbance type && correct GUI representaitons of US_Edit scenarios
Commit: eb8022621705540d2e5a0010b5141f3bd1620591
https://github.com/ehb54/ultrascan3/commit/eb8022621705540d2e5a0010b5141f3bd1620591
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-10-13 (Mon, 13 Oct 2025)
Changed paths:
M programs/us_fit_meniscus/us_fit_meniscus.cpp
Log Message:
-----------
Merge pull request #272 from ehb54/alexey-dev-issue575
GMP: 5. ANALYSIS: FITMEN -- disable update btn right after it's clicked..
Commit: 18b990073be39e32a749536729cba62d576e6c98
https://github.com/ehb54/ultrascan3/commit/18b990073be39e32a749536729cba62d576e6c98
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-10-13 (Mon, 13 Oct 2025)
Changed paths:
M gui/us_report_gui.cpp
M gui/us_widgets.cpp
M gui/us_widgets_dialog.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_experiment/us_proto_ranges.cpp
Log Message:
-----------
Merge pull request #237 from ehb54/alexey-dev-issue521
Alexey dev issue521: Correct and read-only exp. time in channels reports, qspinboxes instead of qwtcounters to control input
Commit: d131cbbccf4b88f4a39d285fb99a84ccfaacb536
https://github.com/ehb54/ultrascan3/commit/d131cbbccf4b88f4a39d285fb99a84ccfaacb536
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-14 (Tue, 14 Oct 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M utils/us_simparms.cpp
M utils/us_simparms.h
Log Message:
-----------
GMP: 4. EDIT -- add rotor stretch to bottom in edit profiles...
Commit: 567202c3572f02c0b782f92791cac022e863829c
https://github.com/ehb54/ultrascan3/commit/567202c3572f02c0b782f92791cac022e863829c
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-10-14 (Tue, 14 Oct 2025)
Changed paths:
M utils/us_buffer.cpp
Log Message:
-----------
Merge pull request #278 from ehb54/lukas/us_buffer_saveToDB
Prevent early exit when saving a new buffer to database
Commit: 2d1d5599a18b1105dd622fb570a284c2af9b3027
https://github.com/ehb54/ultrascan3/commit/2d1d5599a18b1105dd622fb570a284c2af9b3027
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-10-14 (Tue, 14 Oct 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
Log Message:
-----------
us_astfem_sim: save TI, RI noises in the result directory
Commit: 52692bf1ec74f08f07f036d50913983f0cb4902c
https://github.com/ehb54/ultrascan3/commit/52692bf1ec74f08f07f036d50913983f0cb4902c
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-10-14 (Tue, 14 Oct 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
Log Message:
-----------
us_astfem_sim.cpp: fix writing the RI csv profile for multi-speed experiments
Commit: 2bb6c53d1c011cceb17b9ebabc3e0700fea48879
https://github.com/ehb54/ultrascan3/commit/2bb6c53d1c011cceb17b9ebabc3e0700fea48879
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-14 (Tue, 14 Oct 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[debug version, stops at XML write]GMP: 4. EDIT -- add rotor stretch to bottom in edit profiles...
Commit: 2dfbe74efa5e6ca4ebd7b4acb23c8198c6eea001
https://github.com/ehb54/ultrascan3/commit/2dfbe74efa5e6ca4ebd7b4acb23c8198c6eea001
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-14 (Tue, 14 Oct 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[[1]debug version, stops at XML write]GMP: 4. EDIT -- add rotor stretch to bottom in edit profiles...
Commit: 5d05e1a2439de5fa9adb431619c350ae188fcf31
https://github.com/ehb54/ultrascan3/commit/5d05e1a2439de5fa9adb431619c350ae188fcf31
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-10-14 (Tue, 14 Oct 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_astfem_sim/us_astfem_sim.h
Log Message:
-----------
us_astfem_sim: save TI,RI noise profiles into the outout directory
Commit: 883d73df2ac05d1717a2f924737d36a6ddda5a49
https://github.com/ehb54/ultrascan3/commit/883d73df2ac05d1717a2f924737d36a6ddda5a49
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-10-14 (Tue, 14 Oct 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M utils/us_simparms.cpp
M utils/us_simparms.h
Log Message:
-----------
Merge pull request #282 from ehb54/alexey-dev-issue577
GMP: 4. EDIT -- add rotor stretch to bottom in edit profiles...
Commit: 1de51a8c4fb82a5cbb3cf09653f9e235a54c327c
https://github.com/ehb54/ultrascan3/commit/1de51a8c4fb82a5cbb3cf09653f9e235a54c327c
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-10-14 (Tue, 14 Oct 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_astfem_sim/us_astfem_sim.h
Log Message:
-----------
Merge pull request #281 from samo38/issue_587
us_astfem_sim: save TI, RI noises in the result directory
Commit: ecfbe0af9e3b7e855a5d67f491614c06b26261f1
https://github.com/ehb54/ultrascan3/commit/ecfbe0af9e3b7e855a5d67f491614c06b26261f1
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-10-15 (Wed, 15 Oct 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
A .github/workflows/static-analysis.yml
A .github/workflows/unit-tests.yml
M .gitignore
M CMakeLists.txt
A admin/cmake/FindQwt.cmake
A admin/cmake/us_version.h.in
A admin/pam/pam_no_ad/Makefile
A admin/pam/pam_no_ad/README.md
A admin/pam/pam_no_ad/files/mariadb
A admin/pam/pam_no_ad/files/php
A admin/pam/pam_no_ad/files/sssd.conf
A admin/pam/pam_no_ad/files/system-auth-nosss
A admin/pam/pam_no_ad/pam_auth_pamtester.php
A admin/pam/pam_no_ad/pam_auth_test.php
A admin/test/docker/Dockerfile
R doc/manual/README
A doc/manual/README.md
M doc/manual/advanced_config.body
A gui/CMakeLists.txt
M gui/us_abstractrotor_gui.cpp
M gui/us_analysis_base2.cpp
M gui/us_buffer_gui.cpp
M gui/us_data_loader.cpp
M gui/us_failed_gmp_run_gui.cpp
M gui/us_load_auc.cpp
M gui/us_loadable_noise.cpp
R gui/us_model_editor.cpp
R gui/us_model_editor.h
M gui/us_model_gui.cpp
M gui/us_model_gui.h
M gui/us_model_loader.cpp
M gui/us_model_loader.h
M gui/us_noise_loader.cpp
M gui/us_noise_loader.h
M gui/us_project_gui.cpp
M gui/us_report_gui.cpp
M gui/us_rotor_gui.cpp
M gui/us_scan_excl_gui.cpp
M gui/us_scan_excl_gui.h
M gui/us_solution_gui.cpp
M gui/us_widgets.cpp
M gui/us_widgets_dialog.cpp
A programs/CMakeLists.txt
M programs/us/us.cpp
M programs/us/us_win_data.cpp
M programs/us_2dsa/us_2dsa.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_astfem_sim/us_astfem_sim.h
A programs/us_autoflow_analysis/CMakeLists.txt
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
A programs/us_com_project/CMakeLists.txt
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
A programs/us_com_project_academic/CMakeLists.txt
M programs/us_config/us_database.cpp
M programs/us_config/us_xpnhost_db.cpp
M programs/us_config/us_xpnhost_db.h
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_select_triples.h
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_ddist_combine.h
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
A programs/us_experiment/CMakeLists.txt
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_experiment/us_proto_ranges.cpp
A programs/us_fematch/CMakeLists.txt
M programs/us_fematch/us_fematch.cpp
M programs/us_fematch/us_resplot_fem.cpp
A programs/us_fit_meniscus/CMakeLists.txt
M programs/us_fit_meniscus/us_fit_meniscus.cpp
M programs/us_fit_meniscus/us_fit_meniscus_main.cpp
M programs/us_ga_init/us_solutedata.cpp
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M programs/us_integral/us_integral.cpp
M programs/us_mpi_analysis/us_mpi_analysis.cpp
A programs/us_mwl_species_fit/CMakeLists.txt
M programs/us_pcsa/us_adv_analysis_pc.cpp
M programs/us_pcsa/us_analysis_control_pc.cpp
M programs/us_pcsa/us_mrecs_loader.cpp
M programs/us_pcsa/us_mrecs_loader.h
M programs/us_pcsa/us_pcsa.cpp
M programs/us_pcsa/us_pcsa_process.cpp
A programs/us_protocol_dev/CMakeLists.txt
A programs/us_query_rmsd/CMakeLists.txt
M programs/us_ramp/us_experiment_gui_ra.cpp
M programs/us_ramp/us_experiment_ra.cpp
M programs/us_ramp/us_experiment_ra.h
M programs/us_ramp/us_get_dbrun_ra.cpp
M programs/us_ramp/us_ramp_gui.cpp
A programs/us_reporter_gmp/CMakeLists.txt
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
M programs/us_xpn_viewer/us_xpn_run_raw.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
A qwtplot3d/CMakeLists.txt
A test-docker.sh
A test/README
A test/common/qt_test_base.cpp
A test/common/qt_test_base.h
M test/utils/CMakeLists.txt
A test/utils/mock/mock_us_db2.h
A test/utils/test_mock_us_db2.cpp
A test/utils/test_us_ana_profile.cpp
A test/utils/test_us_analyte.cpp
A test/utils/test_us_astfem_math.cpp
A test/utils/test_us_buffer.cpp
A test/utils/test_us_crc.cpp
A test/utils/test_us_crypto.cpp
A test/utils/test_us_dataIO.cpp
M test/utils/test_us_datafiles.cpp
R test/utils/test_us_datafiles.h
A test/utils/test_us_db2.cpp
A test/utils/test_us_math2.cpp
A test/utils/test_us_matrix.cpp
A test/utils/test_us_memory.cpp
A test/utils/test_us_model.cpp
A test/utils/test_us_project.cpp
A test/utils/test_us_settings.cpp
R test/utils/test_us_simparams.cpp
R test/utils/test_us_simparams.h
A test/utils/test_us_simparms.cpp
A test/utils/test_us_stiffbase.cpp
A test/utils/test_us_time_state.cpp
A test/utils/test_us_timer.cpp
M test/utils/test_us_util.cpp
R test/utils/test_us_util.h
M test/utils/test_us_utils_main.cpp
A test/utils/test_us_vector.cpp
M us_somo/develop/include/us3_defines.h
A us_somo/develop/include/us_band_broaden.h
M us_somo/develop/include/us_hydrodyn.h
M us_somo/develop/include/us_hydrodyn_cluster_best.h
M us_somo/develop/include/us_hydrodyn_dad.h
M us_somo/develop/include/us_hydrodyn_hydro.h
M us_somo/develop/include/us_hydrodyn_hydro_zeno.h
M us_somo/develop/include/us_hydrodyn_mals.h
M us_somo/develop/include/us_hydrodyn_saxs.h
M us_somo/develop/include/us_hydrodyn_saxs_buffer.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc_ciq.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc_fit.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc_movie.h
M us_somo/develop/include/us_json.h
M us_somo/develop/include/us_matrix.h
M us_somo/develop/include/us_multi_column.h
M us_somo/develop/include/us_pfortran.h
M us_somo/develop/include/us_saxs_util.h
M us_somo/develop/include/us_tar.h
M us_somo/develop/include/us_tnt_jama.h
M us_somo/develop/include/us_unicode.h
M us_somo/develop/include/us_zeno_cxx.h
M us_somo/develop/include/us_zeno_cxx_nf.h
M us_somo/develop/libus_somo.pro
M us_somo/develop/src/qwt/scrollzoomer.cpp
M us_somo/develop/src/us3i_color.cpp
M us_somo/develop/src/us3i_util.cpp
A us_somo/develop/src/us_band_broaden.cpp
M us_somo/develop/src/us_color.cpp
M us_somo/develop/src/us_config_gui.cpp
M us_somo/develop/src/us_dirhist.cpp
M us_somo/develop/src/us_ffd.cpp
M us_somo/develop/src/us_font.cpp
M us_somo/develop/src/us_fractal_dimension.cpp
M us_somo/develop/src/us_help.cpp
M us_somo/develop/src/us_hydrodyn.cpp
M us_somo/develop/src/us_hydrodyn_addatom.cpp
M us_somo/develop/src/us_hydrodyn_addhybrid.cpp
M us_somo/develop/src/us_hydrodyn_addresidue.cpp
M us_somo/develop/src/us_hydrodyn_addsaxs.cpp
M us_somo/develop/src/us_hydrodyn_batch.cpp
M us_somo/develop/src/us_hydrodyn_bd_core.cpp
M us_somo/develop/src/us_hydrodyn_bd_load_results_opts.cpp
M us_somo/develop/src/us_hydrodyn_bd_options.cpp
M us_somo/develop/src/us_hydrodyn_beads.cpp
M us_somo/develop/src/us_hydrodyn_beads_load.cpp
M us_somo/develop/src/us_hydrodyn_cluster.cpp
M us_somo/develop/src/us_hydrodyn_cluster_advanced.cpp
M us_somo/develop/src/us_hydrodyn_cluster_best.cpp
M us_somo/develop/src/us_hydrodyn_cluster_results.cpp
M us_somo/develop/src/us_hydrodyn_cluster_status.cpp
M us_somo/develop/src/us_hydrodyn_cluster_submit.cpp
M us_somo/develop/src/us_hydrodyn_core.cpp
M us_somo/develop/src/us_hydrodyn_dad.cpp
M us_somo/develop/src/us_hydrodyn_dad_gg.cpp
M us_somo/develop/src/us_hydrodyn_dad_gui.cpp
M us_somo/develop/src/us_hydrodyn_dad_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_bb.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_guinier.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_powerfit.cpp
M us_somo/develop/src/us_hydrodyn_dad_movie.cpp
M us_somo/develop/src/us_hydrodyn_dad_options.cpp
M us_somo/develop/src/us_hydrodyn_dad_parameters.cpp
M us_somo/develop/src/us_hydrodyn_dad_plots.cpp
M us_somo/develop/src/us_hydrodyn_dad_svd.cpp
M us_somo/develop/src/us_hydrodyn_dad_util.cpp
M us_somo/develop/src/us_hydrodyn_dammin_opts.cpp
M us_somo/develop/src/us_hydrodyn_fractal_dimension.cpp
M us_somo/develop/src/us_hydrodyn_grid_atob.cpp
M us_somo/develop/src/us_hydrodyn_grpy.cpp
M us_somo/develop/src/us_hydrodyn_hydrate.cpp
M us_somo/develop/src/us_hydrodyn_hydrate_align.cpp
M us_somo/develop/src/us_hydrodyn_hydro.cpp
M us_somo/develop/src/us_hydrodyn_hydro_zeno.cpp
M us_somo/develop/src/us_hydrodyn_info.cpp
M us_somo/develop/src/us_hydrodyn_load.cpp
M us_somo/develop/src/us_hydrodyn_mals.cpp
M us_somo/develop/src/us_hydrodyn_mals_gg.cpp
M us_somo/develop/src/us_hydrodyn_mals_gui.cpp
M us_somo/develop/src/us_hydrodyn_mals_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_mals_modes_bb.cpp
M us_somo/develop/src/us_hydrodyn_mals_modes_guinier.cpp
M us_somo/develop/src/us_hydrodyn_mals_movie.cpp
M us_somo/develop/src/us_hydrodyn_mals_options.cpp
M us_somo/develop/src/us_hydrodyn_mals_plots.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_gg.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_gui.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_bb.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_guinier.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_scale.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_movie.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_options.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_plots.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_svd.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_util.cpp
M us_somo/develop/src/us_hydrodyn_mals_svd.cpp
M us_somo/develop/src/us_hydrodyn_mals_util.cpp
M us_somo/develop/src/us_hydrodyn_misc.cpp
M us_somo/develop/src/us_hydrodyn_other.cpp
M us_somo/develop/src/us_hydrodyn_pat.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool_merge.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool_util.cpp
M us_somo/develop/src/us_hydrodyn_results.cpp
M us_somo/develop/src/us_hydrodyn_save.cpp
M us_somo/develop/src/us_hydrodyn_saxs.cpp
M us_somo/develop/src/us_hydrodyn_saxs_1d.cpp
M us_somo/develop/src/us_hydrodyn_saxs_2d.cpp
M us_somo/develop/src/us_hydrodyn_saxs_buffer.cpp
A us_somo/develop/src/us_hydrodyn_saxs_buffer_fit.cpp
A us_somo/develop/src/us_hydrodyn_saxs_buffer_gui.cpp
M us_somo/develop/src/us_hydrodyn_saxs_cormap.cpp
M us_somo/develop/src/us_hydrodyn_saxs_guinier.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_ciq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_fit.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_gg.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_gui.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_bb.cpp
A us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_broaden.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_wheel.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_movie.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_options.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_plots.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_svd.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_util.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_bead_model.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_residuals.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_sh.cpp
M us_somo/develop/src/us_hydrodyn_saxs_loads.cpp
M us_somo/develop/src/us_hydrodyn_saxs_mw.cpp
M us_somo/develop/src/us_hydrodyn_saxs_plots.cpp
M us_somo/develop/src/us_hydrodyn_saxs_pr.cpp
M us_somo/develop/src/us_hydrodyn_saxs_screen.cpp
M us_somo/develop/src/us_hydrodyn_script.cpp
M us_somo/develop/src/us_hydrodyn_settings.cpp
M us_somo/develop/src/us_hydrodyn_supc.cpp
M us_somo/develop/src/us_hydrodyn_util.cpp
M us_somo/develop/src/us_hydrodyn_write.cpp
M us_somo/develop/src/us_hydrodyn_zeno.cpp
M us_somo/develop/src/us_imgviewer.cpp
M us_somo/develop/src/us_json.cpp
M us_somo/develop/src/us_matrix.cpp
M us_somo/develop/src/us_plot_util.cpp
M us_somo/develop/src/us_plot_zoom.cpp
M us_somo/develop/src/us_pm_fitness.cpp
M us_somo/develop/src/us_register.cpp
M us_somo/develop/src/us_saxs_util.cpp
M us_somo/develop/src/us_saxs_util_best.cpp
M us_somo/develop/src/us_saxs_util_guinier.cpp
M us_somo/develop/src/us_saxs_util_hydrate.cpp
M us_somo/develop/src/us_saxs_util_hydrate_align.cpp
M us_somo/develop/src/us_saxs_util_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_grid_atob_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_pat_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_supc_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_zeno_hydro.cpp
M us_somo/develop/src/us_saxs_util_iqq.cpp
M us_somo/develop/src/us_saxs_util_iqq_1d.cpp
M us_somo/develop/src/us_saxs_util_iqq_bead_model.cpp
M us_somo/develop/src/us_saxs_util_iqq_pdb.cpp
M us_somo/develop/src/us_saxs_util_loads.cpp
M us_somo/develop/src/us_saxs_util_pat.cpp
M us_somo/develop/src/us_saxs_util_pm.cpp
M us_somo/develop/src/us_saxs_util_static.cpp
M us_somo/develop/src/us_tar.cpp
M us_somo/develop/src/us_util.cpp
M us_somo/develop/src/us_zeno_cxx.cpp
M us_somo/somo/doc/manual/somo/somo-Zeno_optionsNew.png
M us_somo/somo/doc/manual/somo/somo-main0new.png
M us_somo/somo/doc/manual/somo/somo-main4.png
M us_somo/somo/doc/manual/somo/somo.html
A us_somo/somo/doc/manual/somo/somo_ZENO_correction_warning.png
M us_somo/somo/doc/manual/somo/somo_cluster_config.html
M us_somo/somo/doc/manual/somo/somo_hydro_zeno.html
M utils/CMakeLists.txt
A utils/ius_db2.h
M utils/us_ana_profile.cpp
M utils/us_ana_profile.h
M utils/us_analyte.cpp
M utils/us_analyte.h
M utils/us_astfem_math.cpp
M utils/us_astfem_math.h
M utils/us_astfem_rsa.cpp
M utils/us_buffer.cpp
M utils/us_buffer.h
M utils/us_cfa_data.cpp
M utils/us_dataIO.cpp
M utils/us_dataIO.h
M utils/us_db2.cpp
M utils/us_db2.h
M utils/us_eprofile.cpp
M utils/us_eprofile.h
M utils/us_hardware.cpp
M utils/us_hardware.h
M utils/us_lamm_astfvm.cpp
M utils/us_model.cpp
M utils/us_model.h
M utils/us_noise.cpp
M utils/us_noise.h
M utils/us_project.cpp
M utils/us_project.h
M utils/us_report.cpp
M utils/us_report.h
M utils/us_rotor.cpp
M utils/us_rotor.h
M utils/us_run_protocol.h
M utils/us_simparms.cpp
M utils/us_simparms.h
M utils/us_solution.cpp
M utils/us_solution.h
M utils/us_solution_vals.cpp
M utils/us_solution_vals.h
M utils/us_solve_sim.cpp
M utils/us_solve_sim.h
M utils/us_time_state.cpp
M utils/us_time_state.h
Log Message:
-----------
merge master into ehb54-issue-553, conflicts manually resolved
Commit: d19407a738880744130ad2ac275bcd672ace631d
https://github.com/ehb54/ultrascan3/commit/d19407a738880744130ad2ac275bcd672ace631d
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-10-15 (Wed, 15 Oct 2025)
Changed paths:
M utils/us_lamm_astfvm.cpp
M utils/us_license_t.cpp
M utils/us_matrix.cpp
M utils/us_pcsa_modelrec.cpp
M utils/us_project.cpp
M utils/us_run_protocol.cpp
M utils/us_solve_sim.cpp
M utils/us_tar.cpp
M utils/us_time_state.cpp
M utils/us_xpn_data.cpp
Log Message:
-----------
merge master into ehb54-issue-553, conflicts manually resolved
Commit: b94b4a3819d4ec6a71a8d0f0fbfac37d57b8299e
https://github.com/ehb54/ultrascan3/commit/b94b4a3819d4ec6a71a8d0f0fbfac37d57b8299e
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-10-15 (Wed, 15 Oct 2025)
Changed paths:
M gui/us_analysis_base2.cpp
M gui/us_analyte_gui.cpp
M gui/us_data_loader.cpp
M gui/us_extinctfitter_gui.cpp
M gui/us_load_auc.cpp
M gui/us_loadable_noise.cpp
M gui/us_minimize.cpp
M gui/us_model_loader.cpp
M gui/us_noise_loader.cpp
M gui/us_run_details2.cpp
M gui/us_tmst_plot.cpp
M gui/us_window_message.cpp
M programs/us_2dsa/us_2dsa.cpp
M programs/us_astfem_sim/us_clipdata.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_combine_models/us_combine_models.cpp
M programs/us_config/us_color.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_select_rundd.cpp
M programs/us_density_match/us_density_match.cpp
M programs/us_edit/us_edit.cpp
M programs/us_equiltime/us_equiltime.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_export_legacy/us_export.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_fit_meniscus/us_fit_meniscus.cpp
M programs/us_ga_init/us_solutedata.cpp
M programs/us_manage_data/us_data_model.cpp
M programs/us_manage_data/us_data_tree.cpp
M programs/us_mpi_analysis/2dsa_master.cpp
M programs/us_mpi_analysis/dmga_worker.cpp
M programs/us_mpi_analysis/ga_master.cpp
M programs/us_mpi_analysis/ga_worker.cpp
M programs/us_mpi_analysis/pcsa_master.cpp
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_mpi_analysis/us_mpi_parse.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
M programs/us_mwl_spectra/us_mwl_spectra.cpp
M programs/us_mwlr_viewer/us_mwlr_viewer.cpp
M programs/us_rasmol_control/us_rasmol_control.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_spectrum/us_spectrum.cpp
M programs/us_vhw_combine/us_vhw_combine.cpp
M programs/us_vhw_enhanced/us_distrib_plot.cpp
M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M utils/us_lamm_astfvm.cpp
M utils/us_license_t.cpp
M utils/us_matrix.cpp
M utils/us_pcsa_modelrec.cpp
M utils/us_project.cpp
M utils/us_run_protocol.cpp
M utils/us_solve_sim.cpp
M utils/us_tar.cpp
M utils/us_time_state.cpp
M utils/us_xpn_data.cpp
Log Message:
-----------
Merge pull request #246 from ehb54/ehb54-issue-533
issue 533 : convert QString::sprintf to asprintf in gui & programs
Commit: 02cbecf79d8b693a2499249cfce28aa7d58abf6b
https://github.com/ehb54/ultrascan3/commit/02cbecf79d8b693a2499249cfce28aa7d58abf6b
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-10-16 (Thu, 16 Oct 2025)
Changed paths:
M utils/us_gzip.cpp
Log Message:
-----------
us_gzip.cpp - remove useless deprecreated 'register' keyword
Commit: bb10991bf7c251763f2aa53737e6574537102d34
https://github.com/ehb54/ultrascan3/commit/bb10991bf7c251763f2aa53737e6574537102d34
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-17 (Fri, 17 Oct 2025)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP | R&D: 1. EXP.=> Speeds -- change signals/slot sigs. in spinboxes for speed & acceler....
Commit: b5963153ad855cd97a12fb72e6597d2f2684f421
https://github.com/ehb54/ultrascan3/commit/b5963153ad855cd97a12fb72e6597d2f2684f421
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-10-17 (Fri, 17 Oct 2025)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
Merge pull request #284 from ehb54/alexey-dev-issue592
GMP | R&D: 1. EXP.=> Speeds -- change signals/slot sigs. in spinboxes…
Commit: daee08ef80606ac9f5b82e6e92d3c3319d784081
https://github.com/ehb54/ultrascan3/commit/daee08ef80606ac9f5b82e6e92d3c3319d784081
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-10-17 (Fri, 17 Oct 2025)
Changed paths:
M gui/us_abstractrotor_gui.cpp
M gui/us_analyte_gui.cpp
M gui/us_associations_gui.cpp
M gui/us_buffer_gui.cpp
M gui/us_choice.cpp
M gui/us_csv_loader.cpp
M gui/us_data_loader.cpp
M gui/us_editor.h
M gui/us_editor_gui.cpp
M gui/us_investigator.cpp
M gui/us_license.h
M gui/us_load_auc.cpp
M gui/us_model_gui.cpp
M gui/us_model_loader.cpp
M gui/us_noise_loader.cpp
M gui/us_passwd.h
M gui/us_plot.cpp
M gui/us_plot3d.cpp
M gui/us_predict1.cpp
M gui/us_project_gui.cpp
M gui/us_properties.cpp
M gui/us_resids_bitmap.cpp
M gui/us_rotor_gui.cpp
M gui/us_run_details2.cpp
M gui/us_sassoc.h
M gui/us_select_edits.cpp
M gui/us_select_item.cpp
M gui/us_select_runs.cpp
M gui/us_solution_gui.cpp
M gui/us_table.h
M gui/us_tmst_plot.cpp
M gui/us_widgets.h
M gui/us_widgets_dialog.h
M programs/us/us.h
M programs/us_2dsa/us_adv_analysis_2d.cpp
M programs/us_2dsa/us_analysis_control_2d.cpp
M programs/us_2dsa/us_plot_control_2d.cpp
M programs/us_2dsa/us_resplot_2d.cpp
M programs/us_2dsa/us_show_norm.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_astfem_sim/us_clipdata.h
M programs/us_buoyancy/us_buoyancy.cpp
M programs/us_colorgradient/us_colorgradient.h
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_config/us_admin.h
M programs/us_config/us_advanced.h
M programs/us_config/us_color.h
M programs/us_config/us_config.h
M programs/us_config/us_font.h
M programs/us_config/us_xpnhost.h
M programs/us_config/us_xpnhost_db.h
M programs/us_convert/us_experiment_gui.cpp
M programs/us_convert/us_get_run.cpp
M programs/us_convert/us_intensity.cpp
M programs/us_convert/us_select_triples.cpp
M programs/us_ddist_combine/us_select_rundd.cpp
M programs/us_density_match/us_model_params.cpp
M programs/us_density_match/us_remove_models.cpp
M programs/us_dmga_init/us_constraints_edit.cpp
M programs/us_edit/us_edit_scan.cpp
M programs/us_edit/us_exclude_profile.cpp
M programs/us_edit/us_get_edit.cpp
M programs/us_edit/us_ri_noise.cpp
M programs/us_edit/us_select_lambdas.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_proto_ranges.cpp
M programs/us_fematch/us_adv_dmgamc.cpp
M programs/us_fematch/us_advanced_fem.cpp
M programs/us_fematch/us_plot_control_fem.cpp
M programs/us_fematch/us_resplot_fem.cpp
M programs/us_ga_init/us_ga_init.cpp
M programs/us_globalequil/us_eqfit_control.cpp
M programs/us_globalequil/us_eqhistogram.h
M programs/us_globalequil/us_eqmodel_control.cpp
M programs/us_globalequil/us_globalequil.cpp
M programs/us_globalequil/us_long_messagebox.h
M programs/us_globalequil/us_model_adpars.cpp
M programs/us_globalequil/us_model_select.cpp
M programs/us_integral/us_delete_models.cpp
M programs/us_mwl_spectra/us_mwls_pltctl.cpp
M programs/us_mwlr_viewer/us_mwl_pltctrl.cpp
M programs/us_mwlr_viewer/us_mwl_run.cpp
M programs/us_pcsa/us_adv_analysis_pc.cpp
M programs/us_pcsa/us_analysis_control_pc.cpp
M programs/us_pcsa/us_mlplot.cpp
M programs/us_pcsa/us_mrecs_loader.cpp
M programs/us_pcsa/us_plot_control_pc.cpp
M programs/us_pcsa/us_resplot_pc.cpp
M programs/us_pcsa/us_rpscan.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
M programs/us_pseudo3d_combine/us_remove_distros.cpp
M programs/us_ramp/us_experiment_gui_ra.cpp
M programs/us_ramp/us_get_dbrun_ra.cpp
M programs/us_ramp/us_intensity_ra.cpp
M programs/us_ramp/us_select_triples_ra.cpp
M programs/us_reporter/us_sync_db.cpp
M programs/us_rotor_calibration/us_get_dbexp.cpp
M programs/us_vhw_combine/us_select_runid.cpp
M programs/us_vhw_combine/us_vhwc_pltctl.cpp
M programs/us_vhw_enhanced/us_distrib_plot.cpp
M programs/us_xpn_viewer/us_xpn_run_auc.cpp
M programs/us_xpn_viewer/us_xpn_run_raw.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M us_somo/develop/3dplot/lightingdlgbase.h
M us_somo/develop/src/us_hydrodyn.cpp
Log Message:
-----------
Refactor constructor initialization to replace null pointers `(0, 0)` with `nullptr` and explicit `Qt::WindowFlags()` for improved code clarity and modern C++ standards compliance.
Commit: 31ff647d5d67c493fd31589da76c247dae579e47
https://github.com/ehb54/ultrascan3/commit/31ff647d5d67c493fd31589da76c247dae579e47
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-10-17 (Fri, 17 Oct 2025)
Changed paths:
M gui/us_analyte_gui.cpp
M gui/us_associations_gui.cpp
M gui/us_buffer_gui.cpp
M gui/us_widgets.cpp
M programs/us_2dsa/us_show_norm.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_ddist_combine/us_select_rundd.cpp
M programs/us_density_match/us_model_params.cpp
M programs/us_density_match/us_remove_models.cpp
M programs/us_dmga_init/us_constraints_edit.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_globalequil/us_globalequil.cpp
M programs/us_integral/us_delete_models.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
M programs/us_pseudo3d_combine/us_remove_distros.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_vhw_combine/us_select_runid.cpp
Log Message:
-----------
Replace deprecated `QFontMetrics::width()` with `QFontMetrics::horizontalAdvance()` across all affected files for compatibility with Qt 5.11 and above. Streamlines text measurement handling and ensures future proofing.
Commit: d86efe4f3b328918793421ae448d2eb5841785cc
https://github.com/ehb54/ultrascan3/commit/d86efe4f3b328918793421ae448d2eb5841785cc
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-10-17 (Fri, 17 Oct 2025)
Changed paths:
M gui/us_associations_gui.cpp
Log Message:
-----------
Initialize `koligo` to 0 in `us_associations_gui.cpp` to prevent potential usage of an uninitialized variable.
Commit: 7e8e1a176e3f0215069784cf407c928c4c336793
https://github.com/ehb54/ultrascan3/commit/7e8e1a176e3f0215069784cf407c928c4c336793
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-10-17 (Fri, 17 Oct 2025)
Changed paths:
M utils/us_gzip.cpp
Log Message:
-----------
Merge pull request #283 from ehb54/ehb54-issue-591
us_gzip.cpp - remove useless deprecreated 'register' keyword
Commit: 233334757bf486df06d554277c1ec4cf0d0310d2
https://github.com/ehb54/ultrascan3/commit/233334757bf486df06d554277c1ec4cf0d0310d2
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-10-17 (Fri, 17 Oct 2025)
Changed paths:
M gui/us_abstractrotor_gui.cpp
M gui/us_analyte_gui.cpp
M gui/us_associations_gui.cpp
M gui/us_buffer_gui.cpp
M gui/us_choice.cpp
M gui/us_csv_loader.cpp
M gui/us_data_loader.cpp
M gui/us_editor.h
M gui/us_editor_gui.cpp
M gui/us_investigator.cpp
M gui/us_license.h
M gui/us_load_auc.cpp
M gui/us_model_gui.cpp
M gui/us_model_loader.cpp
M gui/us_noise_loader.cpp
M gui/us_passwd.h
M gui/us_plot.cpp
M gui/us_plot3d.cpp
M gui/us_predict1.cpp
M gui/us_project_gui.cpp
M gui/us_properties.cpp
M gui/us_resids_bitmap.cpp
M gui/us_rotor_gui.cpp
M gui/us_run_details2.cpp
M gui/us_sassoc.h
M gui/us_select_edits.cpp
M gui/us_select_item.cpp
M gui/us_select_runs.cpp
M gui/us_solution_gui.cpp
M gui/us_table.h
M gui/us_tmst_plot.cpp
M gui/us_widgets.h
M gui/us_widgets_dialog.h
M programs/us/us.h
M programs/us_2dsa/us_adv_analysis_2d.cpp
M programs/us_2dsa/us_analysis_control_2d.cpp
M programs/us_2dsa/us_plot_control_2d.cpp
M programs/us_2dsa/us_resplot_2d.cpp
M programs/us_2dsa/us_show_norm.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_astfem_sim/us_clipdata.h
M programs/us_buoyancy/us_buoyancy.cpp
M programs/us_colorgradient/us_colorgradient.h
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_config/us_admin.h
M programs/us_config/us_advanced.h
M programs/us_config/us_color.h
M programs/us_config/us_config.h
M programs/us_config/us_font.h
M programs/us_config/us_xpnhost.h
M programs/us_config/us_xpnhost_db.h
M programs/us_convert/us_experiment_gui.cpp
M programs/us_convert/us_get_run.cpp
M programs/us_convert/us_intensity.cpp
M programs/us_convert/us_select_triples.cpp
M programs/us_ddist_combine/us_select_rundd.cpp
M programs/us_density_match/us_model_params.cpp
M programs/us_density_match/us_remove_models.cpp
M programs/us_dmga_init/us_constraints_edit.cpp
M programs/us_edit/us_edit_scan.cpp
M programs/us_edit/us_exclude_profile.cpp
M programs/us_edit/us_get_edit.cpp
M programs/us_edit/us_ri_noise.cpp
M programs/us_edit/us_select_lambdas.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_proto_ranges.cpp
M programs/us_fematch/us_adv_dmgamc.cpp
M programs/us_fematch/us_advanced_fem.cpp
M programs/us_fematch/us_plot_control_fem.cpp
M programs/us_fematch/us_resplot_fem.cpp
M programs/us_ga_init/us_ga_init.cpp
M programs/us_globalequil/us_eqfit_control.cpp
M programs/us_globalequil/us_eqhistogram.h
M programs/us_globalequil/us_eqmodel_control.cpp
M programs/us_globalequil/us_globalequil.cpp
M programs/us_globalequil/us_long_messagebox.h
M programs/us_globalequil/us_model_adpars.cpp
M programs/us_globalequil/us_model_select.cpp
M programs/us_integral/us_delete_models.cpp
M programs/us_mwl_spectra/us_mwls_pltctl.cpp
M programs/us_mwlr_viewer/us_mwl_pltctrl.cpp
M programs/us_mwlr_viewer/us_mwl_run.cpp
M programs/us_pcsa/us_adv_analysis_pc.cpp
M programs/us_pcsa/us_analysis_control_pc.cpp
M programs/us_pcsa/us_mlplot.cpp
M programs/us_pcsa/us_mrecs_loader.cpp
M programs/us_pcsa/us_plot_control_pc.cpp
M programs/us_pcsa/us_resplot_pc.cpp
M programs/us_pcsa/us_rpscan.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
M programs/us_pseudo3d_combine/us_remove_distros.cpp
M programs/us_ramp/us_experiment_gui_ra.cpp
M programs/us_ramp/us_get_dbrun_ra.cpp
M programs/us_ramp/us_intensity_ra.cpp
M programs/us_ramp/us_select_triples_ra.cpp
M programs/us_reporter/us_sync_db.cpp
M programs/us_rotor_calibration/us_get_dbexp.cpp
M programs/us_vhw_combine/us_select_runid.cpp
M programs/us_vhw_combine/us_vhwc_pltctl.cpp
M programs/us_vhw_enhanced/us_distrib_plot.cpp
M programs/us_xpn_viewer/us_xpn_run_auc.cpp
M programs/us_xpn_viewer/us_xpn_run_raw.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M us_somo/develop/3dplot/lightingdlgbase.h
M us_somo/develop/src/us_hydrodyn.cpp
Log Message:
-----------
Merge pull request #285 from ehb54/lukas/qt6-QFlags
Deal with deprecated QFlags prior Qt6 migration
Commit: 03ea185a14d6a79954e1b261b128dee91df5aeec
https://github.com/ehb54/ultrascan3/commit/03ea185a14d6a79954e1b261b128dee91df5aeec
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-10-17 (Fri, 17 Oct 2025)
Changed paths:
M gui/us_analyte_gui.cpp
M gui/us_associations_gui.cpp
M gui/us_buffer_gui.cpp
M gui/us_widgets.cpp
M programs/us_2dsa/us_show_norm.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_ddist_combine/us_select_rundd.cpp
M programs/us_density_match/us_model_params.cpp
M programs/us_density_match/us_remove_models.cpp
M programs/us_dmga_init/us_constraints_edit.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_globalequil/us_globalequil.cpp
M programs/us_integral/us_delete_models.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
M programs/us_pseudo3d_combine/us_remove_distros.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_vhw_combine/us_select_runid.cpp
Log Message:
-----------
Merge pull request #286 from ehb54/lukas/qt6-width
Replace deprecated QFontMetrics::width() with horizontalAdvance()
Commit: 956516318c816bd92b269c913872f6eb9d952d91
https://github.com/ehb54/ultrascan3/commit/956516318c816bd92b269c913872f6eb9d952d91
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-10-17 (Fri, 17 Oct 2025)
Changed paths:
M gui/us_data_loader.cpp
Log Message:
-----------
Merge pull request #279 from ehb54/lukas/static_analysis_warnings
Add null checks before adding child items to make static analysis happy
Commit: cefb4f09592f41675136902739310639b3013aca
https://github.com/ehb54/ultrascan3/commit/cefb4f09592f41675136902739310639b3013aca
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-18 (Sat, 18 Oct 2025)
Changed paths:
M CMakeLists.txt
A CMakePresets.json
A admin/cmake/GenerateVersion.cmake
A admin/cmake/platform-config.cmake
A admin/cmake/triplets/x64-osx-dynamic.cmake
R admin/cmake/us_version.h.in
A buildsys/vcpkg/overlay-ports/qwt/portfile.cmake
A buildsys/vcpkg/overlay-ports/qwt/vcpkg.json
A buildsys/vcpkg/overlay-ports/qwtplot3d/portfile.cmake
A buildsys/vcpkg/overlay-ports/qwtplot3d/qwtplot3d-config.cmake.in
A buildsys/vcpkg/overlay-ports/qwtplot3d/vcpkg.json
M gui/CMakeLists.txt
R gui/us_mac_utils.c
R gui/us_mac_utils.h
R gui/us_win_utils.c
R gui/us_win_utils.h
R gui/us_window_message.cpp
R gui/us_window_message.h
R gui/us_x11_utils.c
R gui/us_x11_utils.h
M programs/CMakeLists.txt
M programs/us/revision.sh
M programs/us/us.cpp
M programs/us_astfem_sim/us_clipdata.h
M programs/us_fit_meniscus/CMakeLists.txt
R programs/us_rasmol_control/us_rasmol_control.cpp
R programs/us_rasmol_control/us_rasmol_control.h
R programs/us_rasmol_control/us_rasmol_control.pro
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M qwtplot3d/CMakeLists.txt
M qwtplot3d/include/qwt3d_openglhelper.h
A scripts/bootstrap.sh
M test/utils/CMakeLists.txt
M utils/CMakeLists.txt
M utils/us_defines.h
A vcpkg
A vcpkg-configuration.json
A vcpkg.json
Log Message:
-----------
add: cmake build update
Commit: aaeaad6c02761cee619ff74a0115ebbed284238d
https://github.com/ehb54/ultrascan3/commit/aaeaad6c02761cee619ff74a0115ebbed284238d
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-18 (Sat, 18 Oct 2025)
Changed paths:
A .gitmodules
Log Message:
-----------
add: vcpkg submodule
Commit: 752239a4b3601d73dc40a986b5616f860208f51e
https://github.com/ehb54/ultrascan3/commit/752239a4b3601d73dc40a986b5616f860208f51e
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-18 (Sat, 18 Oct 2025)
Changed paths:
M gui/CMakeLists.txt
M gui/us_abstractrotor_gui.cpp
M gui/us_analysis_base2.cpp
M gui/us_analyte_gui.cpp
M gui/us_associations_gui.cpp
M gui/us_buffer_gui.cpp
M gui/us_choice.cpp
M gui/us_csv_loader.cpp
M gui/us_data_loader.cpp
M gui/us_editor.h
M gui/us_editor_gui.cpp
M gui/us_extinctfitter_gui.cpp
M gui/us_investigator.cpp
M gui/us_license.h
M gui/us_load_auc.cpp
M gui/us_loadable_noise.cpp
M gui/us_minimize.cpp
M gui/us_model_gui.cpp
M gui/us_model_loader.cpp
M gui/us_noise_loader.cpp
M gui/us_passwd.h
M gui/us_plot.cpp
M gui/us_plot3d.cpp
M gui/us_predict1.cpp
M gui/us_project_gui.cpp
M gui/us_properties.cpp
M gui/us_report_gui.cpp
M gui/us_resids_bitmap.cpp
M gui/us_rotor_gui.cpp
M gui/us_run_details2.cpp
M gui/us_sassoc.h
M gui/us_select_edits.cpp
M gui/us_select_item.cpp
M gui/us_select_runs.cpp
M gui/us_solution_gui.cpp
M gui/us_table.h
M gui/us_tmst_plot.cpp
M gui/us_widgets.cpp
M gui/us_widgets.h
M gui/us_widgets_dialog.cpp
M gui/us_widgets_dialog.h
M programs/us/us.h
M programs/us_2dsa/us_2dsa.cpp
M programs/us_2dsa/us_adv_analysis_2d.cpp
M programs/us_2dsa/us_analysis_control_2d.cpp
M programs/us_2dsa/us_plot_control_2d.cpp
M programs/us_2dsa/us_resplot_2d.cpp
M programs/us_2dsa/us_show_norm.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_astfem_sim/us_astfem_sim.h
M programs/us_astfem_sim/us_clipdata.cpp
M programs/us_astfem_sim/us_clipdata.h
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_buoyancy/us_buoyancy.cpp
M programs/us_colorgradient/us_colorgradient.h
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_combine_models/us_combine_models.cpp
M programs/us_config/us_admin.h
M programs/us_config/us_advanced.h
M programs/us_config/us_color.cpp
M programs/us_config/us_color.h
M programs/us_config/us_config.h
M programs/us_config/us_font.h
M programs/us_config/us_xpnhost.h
M programs/us_config/us_xpnhost_db.h
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_experiment_gui.cpp
M programs/us_convert/us_get_run.cpp
M programs/us_convert/us_intensity.cpp
M programs/us_convert/us_select_triples.cpp
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_select_rundd.cpp
M programs/us_density_match/us_density_match.cpp
M programs/us_density_match/us_model_params.cpp
M programs/us_density_match/us_remove_models.cpp
M programs/us_dmga_init/us_constraints_edit.cpp
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit_scan.cpp
M programs/us_edit/us_exclude_profile.cpp
M programs/us_edit/us_get_edit.cpp
M programs/us_edit/us_ri_noise.cpp
M programs/us_edit/us_select_lambdas.cpp
M programs/us_equiltime/us_equiltime.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_experiment/us_proto_ranges.cpp
M programs/us_export_legacy/us_export.cpp
M programs/us_fematch/us_adv_dmgamc.cpp
M programs/us_fematch/us_advanced_fem.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_fematch/us_plot_control_fem.cpp
M programs/us_fematch/us_resplot_fem.cpp
M programs/us_fit_meniscus/us_fit_meniscus.cpp
M programs/us_ga_init/us_ga_init.cpp
M programs/us_ga_init/us_solutedata.cpp
M programs/us_globalequil/us_eqfit_control.cpp
M programs/us_globalequil/us_eqhistogram.h
M programs/us_globalequil/us_eqmodel_control.cpp
M programs/us_globalequil/us_globalequil.cpp
M programs/us_globalequil/us_long_messagebox.h
M programs/us_globalequil/us_model_adpars.cpp
M programs/us_globalequil/us_model_select.cpp
M programs/us_integral/us_delete_models.cpp
M programs/us_manage_data/us_data_model.cpp
M programs/us_manage_data/us_data_tree.cpp
M programs/us_mpi_analysis/2dsa_master.cpp
M programs/us_mpi_analysis/dmga_worker.cpp
M programs/us_mpi_analysis/ga_master.cpp
M programs/us_mpi_analysis/ga_worker.cpp
M programs/us_mpi_analysis/pcsa_master.cpp
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_mpi_analysis/us_mpi_parse.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
M programs/us_mwl_spectra/us_mwl_spectra.cpp
M programs/us_mwl_spectra/us_mwls_pltctl.cpp
M programs/us_mwlr_viewer/us_mwl_pltctrl.cpp
M programs/us_mwlr_viewer/us_mwl_run.cpp
M programs/us_mwlr_viewer/us_mwlr_viewer.cpp
M programs/us_pcsa/us_adv_analysis_pc.cpp
M programs/us_pcsa/us_analysis_control_pc.cpp
M programs/us_pcsa/us_mlplot.cpp
M programs/us_pcsa/us_mrecs_loader.cpp
M programs/us_pcsa/us_plot_control_pc.cpp
M programs/us_pcsa/us_resplot_pc.cpp
M programs/us_pcsa/us_rpscan.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
M programs/us_pseudo3d_combine/us_remove_distros.cpp
M programs/us_ramp/us_experiment_gui_ra.cpp
M programs/us_ramp/us_get_dbrun_ra.cpp
M programs/us_ramp/us_intensity_ra.cpp
M programs/us_ramp/us_select_triples_ra.cpp
M programs/us_reporter/us_sync_db.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_rotor_calibration/us_get_dbexp.cpp
M programs/us_spectrum/us_spectrum.cpp
M programs/us_vhw_combine/us_select_runid.cpp
M programs/us_vhw_combine/us_vhw_combine.cpp
M programs/us_vhw_combine/us_vhwc_pltctl.cpp
M programs/us_vhw_enhanced/us_distrib_plot.cpp
M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
M programs/us_xpn_viewer/us_xpn_run_auc.cpp
M programs/us_xpn_viewer/us_xpn_run_raw.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M us_somo/develop/3dplot/lightingdlgbase.h
M us_somo/develop/src/us_hydrodyn.cpp
M utils/us_buffer.cpp
M utils/us_gzip.cpp
M utils/us_lamm_astfvm.cpp
M utils/us_license_t.cpp
M utils/us_matrix.cpp
M utils/us_pcsa_modelrec.cpp
M utils/us_project.cpp
M utils/us_run_protocol.cpp
M utils/us_run_protocol.h
M utils/us_simparms.cpp
M utils/us_simparms.h
M utils/us_solve_sim.cpp
M utils/us_tar.cpp
M utils/us_time_state.cpp
M utils/us_xpn_data.cpp
Log Message:
-----------
Merge remote-tracking branch 'origin/master' into 534-enhancement-version-upgrade
# Conflicts:
# gui/us_window_message.cpp
# programs/us_rasmol_control/us_rasmol_control.cpp
Commit: aa011c07ff3e7a68fbec50f20b6e6b54dd9bc28e
https://github.com/ehb54/ultrascan3/commit/aa011c07ff3e7a68fbec50f20b6e6b54dd9bc28e
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-19 (Sun, 19 Oct 2025)
Changed paths:
M CMakeLists.txt
A admin/cmake/Us3QrcCheck.cmake
A admin/cmake/Us3Resources.cmake
M etc/us3-splash.png
M gui/CMakeLists.txt
M gui/images/us3-splash.png
M programs/CMakeLists.txt
M programs/us/us.cpp
M utils/us_defines.h
Log Message:
-----------
add: version to splash screen
Commit: 7f79da6635b8554a946f428c516d36f3cc0025cf
https://github.com/ehb54/ultrascan3/commit/7f79da6635b8554a946f428c516d36f3cc0025cf
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-20 (Mon, 20 Oct 2025)
Changed paths:
M CMakeLists.txt
A doc/manual/CMakeLists.txt
M gui/us_gui_settings.cpp
M gui/us_gui_settings.h
M programs/us/us.cpp
M programs/us/us_win_data.cpp
A programs/us/us_win_data.h
Log Message:
-----------
mod: color palette
Commit: 019da7c3ca727d8f5109dca514e5dcd42ce124dd
https://github.com/ehb54/ultrascan3/commit/019da7c3ca727d8f5109dca514e5dcd42ce124dd
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-10-20 (Mon, 20 Oct 2025)
Changed paths:
M gui/us_buffer_gui.cpp
M gui/us_passwd.cpp
M gui/us_run_details2.cpp
M gui/us_scan_excl_gui.cpp
M gui/us_table.cpp
M gui/us_widgets_dialog.cpp
M programs/us_2dsa/us_2dsa_process.cpp
M programs/us_2dsa/us_show_norm.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_select_rundd.cpp
M programs/us_density_match/us_density_match.cpp
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_select_lambdas.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_fematch/us_adv_dmgamc.cpp
M programs/us_fematch/us_dmga_mc_stats.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_fit_meniscus/us_fit_meniscus.cpp
M programs/us_ga_init/us_ga_init.cpp
M programs/us_ga_init/us_solutedata.cpp
M programs/us_ga_init/us_solutedata.h
M programs/us_globalequil/us_eqreporter.cpp
M programs/us_globalequil/us_long_messagebox.cpp
M programs/us_integral/us_integral.cpp
M programs/us_manage_data/us_data_tree.cpp
M programs/us_manage_data/us_manage_data.cpp
M programs/us_modelmetrics/us_modelmetrics.cpp
M programs/us_mpi_analysis/2dsa_master.cpp
M programs/us_mpi_analysis/dmga_master.cpp
M programs/us_mpi_analysis/dmga_worker.cpp
M programs/us_mpi_analysis/ga_master.cpp
M programs/us_mpi_analysis/ga_worker.cpp
M programs/us_mpi_analysis/parallel_masters.cpp
M programs/us_mpi_analysis/pcsa_master.cpp
M programs/us_mpi_analysis/pmasters_compjob.cpp
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_mwl_spectra/us_mwl_spectra.cpp
M programs/us_mwlr_viewer/us_mwlr_viewer.cpp
M programs/us_pcsa/us_adv_analysis_pc.cpp
M programs/us_pcsa/us_pcsa_process.cpp
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
M programs/us_rotor_calibration/us_rotor_calibration.cpp
M programs/us_vhw_combine/us_select_runid.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M test/modelbuilder/us_modelbuilder.cpp
M utils/us_hardware.cpp
M utils/us_hydrosim.h
M utils/us_xpn_data.cpp
Log Message:
-----------
Lukas/qt6 qsort (#288)
* Replace deprecated `QFontMetrics::width()` with `QFontMetrics::horizontalAdvance()` in `us_passwd.cpp` for compatibility with Qt 5.11+.
* Replace deprecated `QFontMetrics::width()` with `QFontMetrics::horizontalAdvance()` in `us_scan_excl_gui.cpp` for Qt 5.11+ compatibility.
* Replace deprecated `QFontMetrics::width()` with `QFontMetrics::horizontalAdvance()` in `us_widgets_dialog.cpp` for Qt 5.11+ compatibility.
* Replace `qSort` with `std::sort` across all files for consistency and modern C++ standards compliance. Updated related comments to reflect changes.
* Fix typo in header guard macro name in `us_hydrosim.h`
Commit: d396732b1811c44b0e9b297acf9dbb04b42f5b9e
https://github.com/ehb54/ultrascan3/commit/d396732b1811c44b0e9b297acf9dbb04b42f5b9e
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-20 (Mon, 20 Oct 2025)
Changed paths:
M CMakeLists.txt
M admin/cmake/GenerateVersion.cmake
A admin/cmake/UsDefinesParser.cmake
M utils/us_defines.h
Log Message:
-----------
mod: get version description for build from us_defines
Commit: 0c3758833374f0f823c94711990117ec205ab239
https://github.com/ehb54/ultrascan3/commit/0c3758833374f0f823c94711990117ec205ab239
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-20 (Mon, 20 Oct 2025)
Changed paths:
M programs/us/us.cpp
Log Message:
-----------
mod: remove OS from splash screen
Commit: 11bbb002a0e60f0eae185c97adcae193b1ad6b40
https://github.com/ehb54/ultrascan3/commit/11bbb002a0e60f0eae185c97adcae193b1ad6b40
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-20 (Mon, 20 Oct 2025)
Changed paths:
M gui/images/us3-splash.png
M programs/us/us.cpp
Log Message:
-----------
mod: better font handling improved image
Commit: 989b56b797288947df2fec2506b18a7244f9bc06
https://github.com/ehb54/ultrascan3/commit/989b56b797288947df2fec2506b18a7244f9bc06
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-20 (Mon, 20 Oct 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP Reporter -- ind. combined plots in loop....
Commit: 16ab6ce8ca660172b0ac78c0e8309df85225253e
https://github.com/ehb54/ultrascan3/commit/16ab6ce8ca660172b0ac78c0e8309df85225253e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-20 (Mon, 20 Oct 2025)
Changed paths:
M gui/us_report_gui.cpp
Log Message:
-----------
GMP: 8. AProfile: ReportItems -- allow for scienctific notations....
Commit: 3f73b4091ff487ed34f20940b3848f81fa05c856
https://github.com/ehb54/ultrascan3/commit/3f73b4091ff487ed34f20940b3848f81fa05c856
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-20 (Mon, 20 Oct 2025)
Changed paths:
M gui/us_report_gui.cpp
Log Message:
-----------
[1]GMP: 8. AProfile: ReportItems -- allow for scienctific notations....
Commit: 23642c68a2458e32859565ace8c19acc79c81f79
https://github.com/ehb54/ultrascan3/commit/23642c68a2458e32859565ace8c19acc79c81f79
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-20 (Mon, 20 Oct 2025)
Changed paths:
M gui/us_report_gui.cpp
Log Message:
-----------
[2]GMP: 8. AProfile: ReportItems -- allow for scienctific notations....ush
Commit: 2c6055c8e24ad4e4f308aba6baa316732c199ac6
https://github.com/ehb54/ultrascan3/commit/2c6055c8e24ad4e4f308aba6baa316732c199ac6
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-10-21 (Tue, 21 Oct 2025)
Changed paths:
M programs/us_config/us_config.cpp
M programs/us_ddist_combine/us_select_rundd.cpp
M programs/us_dmga_init/us_dmga_init.cpp
M programs/us_manage_data/us_data_tree.cpp
M programs/us_pcsa/us_pcsa_process.cpp
M programs/us_pcsa/us_rpscan.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M test/modelbuilder/us_modelbuilder.cpp
M utils/us_timer.cpp
M utils/us_timer.h
Log Message:
-----------
Lukas/qt6 q time (#289)
* Replace `QTime` with `QElapsedTimer` across multiple source files for enhanced timing precision and consistency. Update related method signatures and data structures as needed to align with the new timer implementation.
* Replace deprecated `QFontMetrics::width()` with `QFontMetrics::horizontalAdvance()` in `us_config.cpp` for Qt 5.11+ compatibility and better text measurement handling.
Commit: dbda7b82c9f80e4698a98012037116cfabaaa824
https://github.com/ehb54/ultrascan3/commit/dbda7b82c9f80e4698a98012037116cfabaaa824
Author: SophiaBird95 <135044923+SophiaBird95 at users.noreply.github.com>
Date: 2025-10-21 (Tue, 21 Oct 2025)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.h
Log Message:
-----------
Merge pull request #270 from ehb54/alexey-dev-issue574
GMP-ABDE: 5. ANALYSIS -- honor AProfile's setting (channels selection) for ANALYSIS && REPORT stages
Commit: 83a8bbdce557a43ae4881196a8b7e72d19bd2de8
https://github.com/ehb54/ultrascan3/commit/83a8bbdce557a43ae4881196a8b7e72d19bd2de8
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-10-21 (Tue, 21 Oct 2025)
Changed paths:
M gui/us_plot.cpp
M programs/us_2dsa/us_2dsa_process.h
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_pcsa/us_pcsa_process.h
M programs/us_reporter/us_reporter.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M us_somo/develop/src/us_editor.cpp
M us_somo/develop/src/us_hydrodyn.cpp
M us_somo/develop/src/us_hydrodyn_batch.cpp
M us_somo/develop/src/us_hydrodyn_bd.cpp
M us_somo/develop/src/us_hydrodyn_comparative.cpp
M us_somo/develop/src/us_hydrodyn_saxs.cpp
Log Message:
-----------
Lukas/qt6 q printer (#290)
* Update deprecated Qt APIs in `us_plot.cpp` and `US_PlotPicker`
Replaced `QPrinter::setOrientation()` with `QPrinter::setPageOrientation()` and migrated from `QTime` to `QElapsedTimer` for mouse event handling. Improves compatibility with modern Qt versions and enhances code consistency.
* Migrate `QTime` to `QElapsedTimer` in `us_2dsa_process.h` for modern Qt compatibility and improved timing accuracy.
* Migrate `QTime` to `QElapsedTimer` in `us_pcsa_process.h` for modern Qt compatibility and improved timing precision.
* Replace deprecated `QPrinter` methods with modern equivalents for improved Qt compatibility.
* Replace deprecated `QPrinter` methods with modern `QPageSize` and `QPageLayout` equivalents for improved Qt compatibility.
* Replace `QPrinter::setPageSize(QPrinter::Letter)` with `QPrinter::setPageSize(QPageSize(QPageSize::Letter))` across multiple files for improved Qt compatibility.
* Replace deprecated `QPrinter::setPageSize()` usage with `QPageSize` constructor for compatibility with modern Qt versions.
Commit: b33cd87e51169ea4a1a8b4eb21dc602abbc56988
https://github.com/ehb54/ultrascan3/commit/b33cd87e51169ea4a1a8b4eb21dc602abbc56988
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-10-21 (Tue, 21 Oct 2025)
Changed paths:
M doc/manual/advanced_config.body
M gui/us_analyte_gui.cpp
M gui/us_plot.cpp
M gui/us_sassoc.cpp
M programs/us/us.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_colorgradient/us_colorgradient.cpp
M programs/us_convert/us_convert.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_fds_filemanager/us_fds_filemanager.cpp
M programs/us_fit_meniscus/us_fit_meniscus.cpp
M programs/us_ga_init/us_solutedata.cpp
M programs/us_helpdaemon/us_helpdaemon.cpp
M programs/us_modelmetrics/us_modelmetrics.cpp
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_mwlr_viewer/us_mwlr_viewer.cpp
M programs/us_pseudo_absorbance/us_add_refScan.cpp
M programs/us_ramp/us_ramp_gui.cpp
M programs/us_rotor_calibration/us_rotor_calibration.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M test/modelbuilder/us_modelbuilder.cpp
M us_somo/develop/src/qwt/scrollzoomer.cpp
M utils/us_crypto.cpp
M utils/us_db2.cpp
Log Message:
-----------
Lukas/qt6 qendl qstring qcolor::light qproccess::start (#291)
* Add empty argument list to `process->start` for consistency and compatibility
* Replace deprecated `QString::SkipEmptyParts` with `Qt::SkipEmptyParts` for compatibility with modern Qt versions across all affected files.
* Replace `endl` with `Qt::endl` in `us_modelbuilder.cpp` for compatibility with Qt's modern streaming API.
* Replace `QColor::light()` with `QColor::lighter()` in `us_xpn_viewer_gui.cpp` for compatibility with modern Qt API.
* Replace deprecated use of `QPixmap*` with modern `QPixmap` by value in `us_colorgradient.cpp` for compatibility with updated Qt API.
* Replace deprecated `swap()` with `swapItemsAt()` across all affected files for compatibility with modern Qt API.
* Replace deprecated `mysql_ssl_set()` with `mysql_optionsv()` for SSL configuration in `us_db2.cpp` to align with modern MySQL API.
* Disable `MYSQL_OPT_SSL_VERIFY_SERVER_CERT` in `us_db2.cpp` for improved compatibility with specific MySQL setups.
* Document `MYSQL_OPT_SSL_VERIFY_SERVER_CERT` flag in advanced configuration manual.
* Replace deprecated `qsrand()` and `qrand()` with `QRandomGenerator` in `us_crypto.cpp` for compatibility with modern Qt API.
* Replace deprecated `mysql_optionsv()` with `mysql_options()` for SSL configuration in `us_db2.cpp` to align with modern MySQL API.
* Add support for `MYSQL_OPT_SSL_MODE` in `us_db2.cpp` to handle SSL configuration on modern MySQL versions while retaining compatibility with legacy `MYSQL_OPT_SSL_VERIFY_SERVER_CERT`.
* Replace deprecated `Qt::MidButton` with `Qt::MiddleButton` for compatibility with modern Qt API.
* Replace deprecated `QFileDialog::DirectoryOnly` with `QFileDialog::ShowDirsOnly` for compatibility with modern Qt API.
* Use `QRandomGenerator::securelySeeded()` in `us_crypto.cpp` for improved security and modern Qt API compliance.
Commit: 1a03ab20cc40456ca64dde16388dff6b7868db64
https://github.com/ehb54/ultrascan3/commit/1a03ab20cc40456ca64dde16388dff6b7868db64
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-21 (Tue, 21 Oct 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
[unit conv.]GMP Reporter -- ind. combined plots in loop....
Commit: 8e826acf1af8661fd6bbf08cc4d75fcdfa258d71
https://github.com/ehb54/ultrascan3/commit/8e826acf1af8661fd6bbf08cc4d75fcdfa258d71
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-21 (Tue, 21 Oct 2025)
Changed paths:
M gui/us_combined_plots_parms_gui.cpp
M gui/us_report_gui.cpp
Log Message:
-----------
[unit conv.]GMP Reporter -- ind. combined plots in loop: convert units for D, MW properly to display integration ranges; add units memo in ReportItems && Global settings for combined plots guis....
Commit: ba42be34c9a7147dfdd18b0f1487beade68f6d39
https://github.com/ehb54/ultrascan3/commit/ba42be34c9a7147dfdd18b0f1487beade68f6d39
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-10-22 (Wed, 22 Oct 2025)
Changed paths:
M CMakeLists.txt
M admin/codeql/docker/local.pri.gui
M admin/codeql/docker/local.pri.mpi
M admin/codeql/docker/local.pri.somo
M gui/us_failed_gmp_run_gui.cpp
M gui/us_plot.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_fit_meniscus/us_fit_meniscus.cpp
M programs/us_globalequil/us_long_messagebox.cpp
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_mpi_analysis/us_mpi_parse.cpp
M qwtplot3d/qwtplot3d.pro
M qwtplot3d/src/qwt3d_mousekeyboard.cpp
M us_somo/develop/src/us_dirhist.cpp
M utils/us_link_ssl.cpp
M utils/us_math2.cpp
M utils/us_math2.h
Log Message:
-----------
qt6 migration - final touches (#293)
* Fix incorrect bitwise operator in `setFrameStyle` for message box
Corrected `||` to `|` in `setFrameStyle` to ensure proper combination of frame style flags.
* Replace `qrand`/`qsrand` usage with `QRandomGenerator` in `US_Math2` for improved random number generation and modern standards compliance.
* Replace deprecated `QWheelEvent::delta()` with `QWheelEvent::angleDelta().y()` to ensure compatibility with modern Qt versions.
* Refactor `.simplified()` usage to assign returned value explicitly across multiple files for improved readability and consistency.
* Fix missing brackets in conditional check for `pb_scan_excl` visibility
Ensure proper scoping by adding brackets to the conditional block, improving code readability and correctness.
* Define `QT_DISABLE_DEPRECATED_UP_TO` to disable all deprecated functionality in Qt 6.10 and earlier.
* Enable deprecation warnings as errors and define `QT_DISABLE_DEPRECATED_UP_TO` for consistent handling of deprecated functionality across builds.
* Define `QT_DISABLE_DEPRECATED_UP_TO` to disable all deprecated functionality in Qt 6.9 and earlier.
* Replace deprecated `QString::SkipEmptyParts` with `Qt::SkipEmptyParts` to ensure compatibility with modern Qt versions.
* Replace deprecated `QString::SkipEmptyParts` with `Qt::SkipEmptyParts` to ensure compatibility with modern Qt versions.
Commit: f0b2eeb5fd0214cdb53e4e79eadcd4088bf53345
https://github.com/ehb54/ultrascan3/commit/f0b2eeb5fd0214cdb53e4e79eadcd4088bf53345
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-10-22 (Wed, 22 Oct 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
Log Message:
-----------
Enhance directory handling and noise saving logic
Added checks to prevent overwriting existing directories and prompt user for confirmation. Updated saving logic for TI and RI noises.
Commit: 74cf8fef407532cec7439f4b6fce957a30e11b7f
https://github.com/ehb54/ultrascan3/commit/74cf8fef407532cec7439f4b6fce957a30e11b7f
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-10-22 (Wed, 22 Oct 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
Log Message:
-----------
Remove disabling of save button after simulation was saved
Commit: dc9e6549f27c2f12e35a41d74a9519fac652a318
https://github.com/ehb54/ultrascan3/commit/dc9e6549f27c2f12e35a41d74a9519fac652a318
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-10-22 (Wed, 22 Oct 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
Log Message:
-----------
Merge pull request #294 from ehb54/lukas/us_astfem_sim_saving
Enhance directory handling and noise saving logic
Commit: 3439e79d5dbf652dc8de9e0ea04d1f8a6ab91124
https://github.com/ehb54/ultrascan3/commit/3439e79d5dbf652dc8de9e0ea04d1f8a6ab91124
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-22 (Wed, 22 Oct 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[unit conv.]GMP Reporter -- debug stats; MW & D....
Commit: 1eb76f7674fa95820ac254061b4539a1ba0b4dc2
https://github.com/ehb54/ultrascan3/commit/1eb76f7674fa95820ac254061b4539a1ba0b4dc2
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-22 (Wed, 22 Oct 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
[11unit conv.]GMP Reporter -- debug stats; MW & D....
Commit: e519d6ca64030d2e4f71137b58b6e6f41a0c9a62
https://github.com/ehb54/ultrascan3/commit/e519d6ca64030d2e4f71137b58b6e6f41a0c9a62
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-23 (Thu, 23 Oct 2025)
Changed paths:
M gui/us_combined_plots_parms_gui.cpp
M gui/us_report_gui.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M utils/us_ana_profile.cpp
Log Message:
-----------
GMP Reporter -- units conv. for s, D20W, MW & D in both global combo- and individual plots; integr. ranges in ind. plots; specify d20W for D in units memo....
Commit: d351cf7e1466b360b85fb0cac36fe7ec8efa445f
https://github.com/ehb54/ultrascan3/commit/d351cf7e1466b360b85fb0cac36fe7ec8efa445f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-23 (Thu, 23 Oct 2025)
Changed paths:
M gui/us_report_gui.cpp
Log Message:
-----------
[1]GMP Reporter -- units conv. for s, D20W, MW & D in both global combo- and individual plots; integr. ranges in ind. plots; specify d20W for D in units memo....
Commit: 4a68235cf595a6ec04a0deb90dd29b8aaaf6f673
https://github.com/ehb54/ultrascan3/commit/4a68235cf595a6ec04a0deb90dd29b8aaaf6f673
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-10-23 (Thu, 23 Oct 2025)
Changed paths:
M gui/us_combined_plots_parms_gui.cpp
M gui/us_report_gui.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M utils/us_ana_profile.cpp
Log Message:
-----------
Merge pull request #292 from ehb54/alexey-dev-issue604
Alexey dev issue604: Report for ind. comb. && Units for [s,D,MW] conversion and memo
Commit: 08bd6d595eb6426644151df1b6004aa0fd8c2948
https://github.com/ehb54/ultrascan3/commit/08bd6d595eb6426644151df1b6004aa0fd8c2948
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-10-24 (Fri, 24 Oct 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
M .github/workflows/static-analysis.yml
M .github/workflows/unit-tests.yml
M README.md
M admin/release/buildpkg.pl
M admin/release/centos7/Dockerfile
M admin/release/redhat/Dockerfile
M admin/release/ubuntu/Dockerfile
M admin/release/ubuntu_qt6/Dockerfile
M doc/manual/advanced_config.body
M gui/us_widgets.cpp
M gui/us_widgets.h
M programs/us/us.cpp
M programs/us/us.h
M programs/us_2dsa/us_2dsa.cpp
M programs/us_dcdt/us_dcdt.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_pcsa/us_pcsa.cpp
M programs/us_second_moment/us_second_moment.cpp
Log Message:
-----------
Lukas/master2main usglobal (#297)
* Update branch references from `master` to `main` across workflows, documentation, and build scripts. Add conditional triggers to workflows for targeted file-path changes, improving efficiency.
* Move user-level synchronization logic to `US_Win::update_user_level()` to ensure master password has only to be entered once
* Let codeql-analysis run no matter the changes
* Implement optional auto-positioning based on `US_Settings::debug_value("auto_positioning")`.
Modified multiple modules to conditionally apply global positioning logic when "auto_positioning" is enabled. Refactored `US_Widgets` to include a `global_positioning` flag and adjusted widget geometry initialization accordingly.
* Update gui/us_widgets.h
* Update programs/us_mwl_species_fit/us_mwl_species_fit.cpp
Commit: 4375dec9c287500081a412353bd6a8d4b0dbd015
https://github.com/ehb54/ultrascan3/commit/4375dec9c287500081a412353bd6a8d4b0dbd015
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-27 (Mon, 27 Oct 2025)
Changed paths:
M etc/us3-GMP-icon-128x128.ico
M etc/us3-GMP-icon-128x128.png
M etc/us3-GMP-icon-128x128.xpm
M etc/us3-GMP-icon-32x32.ico
M etc/us3-GMP-icon-32x32.png
M etc/us3-GMP-icon-32x32.xpm
M etc/us3-GMP-icon-48x48.ico
M etc/us3-GMP-icon-48x48.png
M etc/us3-GMP-icon-48x48.xpm
M etc/us3-icon-128x128.ico
M etc/us3-icon-128x128.png
M etc/us3-icon-32x32.png
M etc/us3-icon-32x32.xpm
M etc/us3-icon-48x48.ico
M etc/us3-icon-48x48.png
M etc/us3-icon-48x48.xpm
M etc/us3-icon.icns
M gui/images/check.png
M gui/images/us3-icon-128x128.png
M gui/images/us3-icon-16x16.png
M gui/images/us3-icon-256x256.png
M gui/images/us3-icon-32x32.png
M gui/images/us3-icon-48x48.png
M gui/images/us3-icon-512x512.png
M gui/images/us3-icon-64x64.png
Log Message:
-----------
mod: update icons
Commit: 515eaaf6649d633f2f1ebe08fa6e6d17166ab7af
https://github.com/ehb54/ultrascan3/commit/515eaaf6649d633f2f1ebe08fa6e6d17166ab7af
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-27 (Mon, 27 Oct 2025)
Changed paths:
A etc/us3-icon-128x128.xpm
A etc/us3-icon-32x32.ico
Log Message:
-----------
add: icons for all extensions
Commit: 1f221d2f71c97c26c68d54f94c404ec7a1455bc3
https://github.com/ehb54/ultrascan3/commit/1f221d2f71c97c26c68d54f94c404ec7a1455bc3
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-28 (Tue, 28 Oct 2025)
Changed paths:
M gui/us_gui_settings.cpp
M gui/us_gui_settings.h
Log Message:
-----------
mod: remove qt4 code
Commit: 2db3a5f9997a9b2eb153a6af2832c0b693d5e640
https://github.com/ehb54/ultrascan3/commit/2db3a5f9997a9b2eb153a6af2832c0b693d5e640
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-28 (Tue, 28 Oct 2025)
Changed paths:
M gui/us_gui_settings.cpp
M gui/us_gui_settings.h
Log Message:
-----------
mod: format code
Commit: 3a91742fcd41c424cda2dfa8b85cd80aadc2255b
https://github.com/ehb54/ultrascan3/commit/3a91742fcd41c424cda2dfa8b85cd80aadc2255b
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-28 (Tue, 28 Oct 2025)
Changed paths:
A etc/README
Log Message:
-----------
add: image readme for image conversion
Commit: 2569ebda100a0b333a3f529881d53c8771f9aae5
https://github.com/ehb54/ultrascan3/commit/2569ebda100a0b333a3f529881d53c8771f9aae5
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-28 (Tue, 28 Oct 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
M .github/workflows/static-analysis.yml
M .github/workflows/unit-tests.yml
M CMakeLists.txt
M README.md
M admin/codeql/docker/local.pri.gui
M admin/codeql/docker/local.pri.mpi
M admin/codeql/docker/local.pri.somo
M admin/release/buildpkg.pl
M admin/release/centos7/Dockerfile
M admin/release/redhat/Dockerfile
M admin/release/ubuntu/Dockerfile
M admin/release/ubuntu_qt6/Dockerfile
M doc/manual/advanced_config.body
M gui/us_analyte_gui.cpp
M gui/us_buffer_gui.cpp
M gui/us_combined_plots_parms_gui.cpp
M gui/us_failed_gmp_run_gui.cpp
M gui/us_passwd.cpp
M gui/us_plot.cpp
M gui/us_report_gui.cpp
M gui/us_run_details2.cpp
M gui/us_sassoc.cpp
M gui/us_scan_excl_gui.cpp
M gui/us_table.cpp
M gui/us_widgets.cpp
M gui/us_widgets.h
M gui/us_widgets_dialog.cpp
M programs/us/us.cpp
M programs/us/us.h
M programs/us_2dsa/us_2dsa.cpp
M programs/us_2dsa/us_2dsa_process.cpp
M programs/us_2dsa/us_2dsa_process.h
M programs/us_2dsa/us_show_norm.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_colorgradient/us_colorgradient.cpp
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_config/us_config.cpp
M programs/us_convert/us_convert.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_dcdt/us_dcdt.cpp
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_select_rundd.cpp
M programs/us_density_match/us_density_match.cpp
M programs/us_dmga_init/us_dmga_init.cpp
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_select_lambdas.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_fds_filemanager/us_fds_filemanager.cpp
M programs/us_fematch/us_adv_dmgamc.cpp
M programs/us_fematch/us_dmga_mc_stats.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_fit_meniscus/us_fit_meniscus.cpp
M programs/us_ga_init/us_ga_init.cpp
M programs/us_ga_init/us_solutedata.cpp
M programs/us_ga_init/us_solutedata.h
M programs/us_globalequil/us_eqreporter.cpp
M programs/us_globalequil/us_long_messagebox.cpp
M programs/us_helpdaemon/us_helpdaemon.cpp
M programs/us_integral/us_integral.cpp
M programs/us_manage_data/us_data_tree.cpp
M programs/us_manage_data/us_manage_data.cpp
M programs/us_modelmetrics/us_modelmetrics.cpp
M programs/us_mpi_analysis/2dsa_master.cpp
M programs/us_mpi_analysis/dmga_master.cpp
M programs/us_mpi_analysis/dmga_worker.cpp
M programs/us_mpi_analysis/ga_master.cpp
M programs/us_mpi_analysis/ga_worker.cpp
M programs/us_mpi_analysis/parallel_masters.cpp
M programs/us_mpi_analysis/pcsa_master.cpp
M programs/us_mpi_analysis/pmasters_compjob.cpp
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_mpi_analysis/us_mpi_parse.cpp
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.h
M programs/us_mwl_spectra/us_mwl_spectra.cpp
M programs/us_mwlr_viewer/us_mwlr_viewer.cpp
M programs/us_pcsa/us_adv_analysis_pc.cpp
M programs/us_pcsa/us_pcsa.cpp
M programs/us_pcsa/us_pcsa_process.cpp
M programs/us_pcsa/us_pcsa_process.h
M programs/us_pcsa/us_rpscan.cpp
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
M programs/us_pseudo_absorbance/us_add_refScan.cpp
M programs/us_ramp/us_ramp_gui.cpp
M programs/us_reporter/us_reporter.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_rotor_calibration/us_rotor_calibration.cpp
M programs/us_second_moment/us_second_moment.cpp
M programs/us_vhw_combine/us_select_runid.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M qwtplot3d/qwtplot3d.pro
M qwtplot3d/src/qwt3d_mousekeyboard.cpp
M test/modelbuilder/us_modelbuilder.cpp
M us_somo/develop/src/qwt/scrollzoomer.cpp
M us_somo/develop/src/us_dirhist.cpp
M us_somo/develop/src/us_editor.cpp
M us_somo/develop/src/us_hydrodyn.cpp
M us_somo/develop/src/us_hydrodyn_batch.cpp
M us_somo/develop/src/us_hydrodyn_bd.cpp
M us_somo/develop/src/us_hydrodyn_comparative.cpp
M us_somo/develop/src/us_hydrodyn_saxs.cpp
M utils/us_ana_profile.cpp
M utils/us_crypto.cpp
M utils/us_db2.cpp
M utils/us_hardware.cpp
M utils/us_hydrosim.h
M utils/us_link_ssl.cpp
M utils/us_math2.cpp
M utils/us_math2.h
M utils/us_timer.cpp
M utils/us_timer.h
M utils/us_xpn_data.cpp
Log Message:
-----------
Merge remote-tracking branch 'origin/main' into 534-enhancement-version-upgrade
# Conflicts:
# programs/us/us.cpp
Commit: 102666e6eebaafe3144edfce3728a62e33ab053c
https://github.com/ehb54/ultrascan3/commit/102666e6eebaafe3144edfce3728a62e33ab053c
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-31 (Fri, 31 Oct 2025)
Changed paths:
M CMakeLists.txt
M admin/test/docker/Dockerfile
M gui/CMakeLists.txt
M programs/CMakeLists.txt
A programs/us/CMakeLists.txt
M programs/us/us.cpp
M programs/us/us_win_data.h
A programs/us_2dplot/CMakeLists.txt
A programs/us_2dsa/CMakeLists.txt
A programs/us_abde/CMakeLists.txt
A programs/us_analysis_profile/CMakeLists.txt
A programs/us_analyte/CMakeLists.txt
A programs/us_assign_reviewers_gmp/CMakeLists.txt
A programs/us_astfem_sim/CMakeLists.txt
A programs/us_audit_trail_gmp/CMakeLists.txt
A programs/us_buffer/CMakeLists.txt
A programs/us_buoyancy/CMakeLists.txt
A programs/us_colorgradient/CMakeLists.txt
A programs/us_combine_models/CMakeLists.txt
A programs/us_config/CMakeLists.txt
A programs/us_convert/CMakeLists.txt
A programs/us_dcdt/CMakeLists.txt
A programs/us_ddist_combine/CMakeLists.txt
A programs/us_density_match/CMakeLists.txt
A programs/us_dmga_init/CMakeLists.txt
A programs/us_edit/CMakeLists.txt
A programs/us_equiltime/CMakeLists.txt
A programs/us_esigner_gmp/CMakeLists.txt
A programs/us_export_legacy/CMakeLists.txt
A programs/us_extinction/CMakeLists.txt
A programs/us_fds_filemanager/CMakeLists.txt
M programs/us_fit_meniscus/CMakeLists.txt
A programs/us_ga_init/CMakeLists.txt
A programs/us_globalequil/CMakeLists.txt
A programs/us_grid_editor/CMakeLists.txt
A programs/us_helpdaemon/CMakeLists.txt
A programs/us_integral/CMakeLists.txt
A programs/us_investigator/CMakeLists.txt
A programs/us_legacy_converter/CMakeLists.txt
A programs/us_license/CMakeLists.txt
A programs/us_manage_data/CMakeLists.txt
A programs/us_model_gui/CMakeLists.txt
A programs/us_modelmetrics/CMakeLists.txt
A programs/us_mpi_analysis/CMakeLists.txt
A programs/us_mwl_species_sim/CMakeLists.txt
A programs/us_mwl_spectra/CMakeLists.txt
A programs/us_mwlr_viewer/CMakeLists.txt
A programs/us_pcsa/CMakeLists.txt
A programs/us_predict1/CMakeLists.txt
A programs/us_predict2/CMakeLists.txt
A programs/us_project/CMakeLists.txt
A programs/us_pseudo3d_combine/CMakeLists.txt
A programs/us_pseudo_absorbance/CMakeLists.txt
A programs/us_ramp/CMakeLists.txt
A programs/us_reassign_reviewers_gmp/CMakeLists.txt
A programs/us_reporter/CMakeLists.txt
A programs/us_rotor/CMakeLists.txt
A programs/us_rotor_calibration/CMakeLists.txt
A programs/us_sassoc/CMakeLists.txt
A programs/us_second_moment/CMakeLists.txt
A programs/us_solution/CMakeLists.txt
A programs/us_spectrum/CMakeLists.txt
A programs/us_tmst_viewer/CMakeLists.txt
A programs/us_vhw_combine/CMakeLists.txt
A programs/us_vhw_enhanced/CMakeLists.txt
A programs/us_xpn_viewer/CMakeLists.txt
M scripts/bootstrap.sh
M test-docker.sh
M test/utils/CMakeLists.txt
M test/utils/test_us_ana_profile.cpp
M utils/CMakeLists.txt
Log Message:
-----------
mod: simply build by adding profile config
Commit: 18fcc684bbff2846566a57efafe210efec23cb07
https://github.com/ehb54/ultrascan3/commit/18fcc684bbff2846566a57efafe210efec23cb07
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-31 (Fri, 31 Oct 2025)
Changed paths:
M gui/us_gui_settings.cpp
M gui/us_gui_settings.h
Log Message:
-----------
mod: used if-else instead of series of if statements.
Commit: 5aae8e45629593aea0b0e007a8f2166c6f60b9c4
https://github.com/ehb54/ultrascan3/commit/5aae8e45629593aea0b0e007a8f2166c6f60b9c4
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-31 (Fri, 31 Oct 2025)
Changed paths:
M gui/libus_gui.pro
Log Message:
-----------
fix: remove mac x11 lib dependency and references to us_window_message
Commit: d66e17404eb6616c8b39235715683f81791c61b3
https://github.com/ehb54/ultrascan3/commit/d66e17404eb6616c8b39235715683f81791c61b3
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-31 (Fri, 31 Oct 2025)
Changed paths:
M programs/us/us.cpp
Log Message:
-----------
fix: antialiasing deprecation in qpainter
Commit: 9d2f668621b521ec83972272c72a14913582c0e2
https://github.com/ehb54/ultrascan3/commit/9d2f668621b521ec83972272c72a14913582c0e2
Author: aaron <aaron at aucsolutions.com>
Date: 2025-11-01 (Sat, 01 Nov 2025)
Changed paths:
M alpha/us.cpp
M gui/libus_gui.pro
M gui/us_analysis_base2.cpp
M gui/us_analyte_gui.cpp
M gui/us_buffer_gui.cpp
M gui/us_combined_plots_parms_gui.cpp
M gui/us_edit_spectrum.cpp
M gui/us_extinctfitter_gui.cpp
M gui/us_extinction_gui.cpp
M gui/us_gui_util.cpp
M gui/us_new_spectrum.cpp
M gui/us_plot.cpp
M gui/us_plot.h
M gui/us_plot3d.cpp
M gui/us_report_general_gui.cpp
M gui/us_report_gui.cpp
M gui/us_run_details2.cpp
M gui/us_sassoc.cpp
M gui/us_scan_excl_gui.cpp
M gui/us_sim_params_gui.cpp
M gui/us_solution_gui.cpp
M gui/us_spectrodata.cpp
M gui/us_spectrodata.h
M gui/us_tmst_plot.cpp
M gui/us_widgets.cpp
M gui/us_widgets_dialog.cpp
M programs/us_2dplot/us_2dplot.cpp
M programs/us_2dplot/us_2dplot.h
M programs/us_2dsa/us_2dsa.cpp
M programs/us_2dsa/us_analysis_control_2d.cpp
M programs/us_2dsa/us_resplot_2d.cpp
M programs/us_2dsa/us_show_norm.cpp
M programs/us_abde/us_norm_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_buoyancy/us_buoyancy.cpp
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_config/us_color.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_intensity.cpp
M programs/us_dcdt/us_dcdt.cpp
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit_scan.cpp
M programs/us_edit/us_ri_noise.cpp
M programs/us_equiltime/us_equiltime.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_proto_ranges.cpp
M programs/us_export_legacy/us_export.cpp
M programs/us_fds_filemanager/us_fds_filemanager.cpp
M programs/us_fematch/us_adv_dmgamc.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_fematch/us_resplot_fem.cpp
M programs/us_fit_meniscus/us_fit_meniscus.cpp
M programs/us_ga_init/us_ga_init.cpp
M programs/us_globalequil/us_eqfit_control.cpp
M programs/us_globalequil/us_eqhistogram.cpp
M programs/us_globalequil/us_globalequil.cpp
M programs/us_modelmetrics/us_modelmetrics.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
M programs/us_mwl_spectra/us_mwl_spectra.cpp
M programs/us_mwlr_viewer/us_mwlr_viewer.cpp
M programs/us_pcsa/us_mlplot.cpp
M programs/us_pcsa/us_pcsa.cpp
M programs/us_pcsa/us_resplot_pc.cpp
M programs/us_pcsa/us_rpscan.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
M programs/us_ramp/us_intensity_ra.cpp
M programs/us_ramp/us_ramp_gui.cpp
M programs/us_rotor_calibration/us_rotor_calibration.cpp
M programs/us_second_moment/us_second_moment.cpp
M programs/us_spectrum/us_spectrum.cpp
M programs/us_vhw_combine/us_vhw_combine.cpp
M programs/us_vhw_enhanced/us_distrib_plot.cpp
M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
mod: remove qt4 code and qt 5 checks
Commit: 52e0a85023eb1f0cdb0de69292af086d18a1d727
https://github.com/ehb54/ultrascan3/commit/52e0a85023eb1f0cdb0de69292af086d18a1d727
Author: aaron <aaron at aucsolutions.com>
Date: 2025-11-01 (Sat, 01 Nov 2025)
Changed paths:
M programs/us/us.cpp
Log Message:
-----------
fix: depreciation error
Commit: 7e8cbe171f518cc11cbdf6c45239e1232ccb5726
https://github.com/ehb54/ultrascan3/commit/7e8cbe171f518cc11cbdf6c45239e1232ccb5726
Author: aaron <aaron at aucsolutions.com>
Date: 2025-11-03 (Mon, 03 Nov 2025)
Changed paths:
M admin/cmake/GenerateVersion.cmake
M programs/us/revision.sh
M programs/us/us.cpp
M programs/us/us.h
R scripts/bootstrap.sh
A scripts/build.sh
Log Message:
-----------
mod: add resizing and remove extra UTC in label
Commit: 675780eab109aad6807c5e89cbc50dbdbd962772
https://github.com/ehb54/ultrascan3/commit/675780eab109aad6807c5e89cbc50dbdbd962772
Author: aaron <aaron at aucsolutions.com>
Date: 2025-11-03 (Mon, 03 Nov 2025)
Changed paths:
M programs/us/us.pro
Log Message:
-----------
fix: add us_win_data.h
Commit: b91982360f02fc7d35efdbb917d2e08596c14560
https://github.com/ehb54/ultrascan3/commit/b91982360f02fc7d35efdbb917d2e08596c14560
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-03 (Mon, 03 Nov 2025)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
Log Message:
-----------
Prot_DEV -- dataDisk type of data to reuse in Prot Dev....
Commit: 04ac91d9174e6d65816307faf1663175f2de6e72
https://github.com/ehb54/ultrascan3/commit/04ac91d9174e6d65816307faf1663175f2de6e72
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-03 (Mon, 03 Nov 2025)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
[1]Prot_DEV -- dataDisk type of data to reuse in Prot Dev....
Commit: a107deb079b8089a73b101015763d8462f3aa43c
https://github.com/ehb54/ultrascan3/commit/a107deb079b8089a73b101015763d8462f3aa43c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-03 (Mon, 03 Nov 2025)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
[2]Prot_DEV -- dataDisk type of data to reuse in Prot Dev....
Commit: 320d50900efb79fdee663f85ef36825cc55e3c3d
https://github.com/ehb54/ultrascan3/commit/320d50900efb79fdee663f85ef36825cc55e3c3d
Author: aaron <aaron at aucsolutions.com>
Date: 2025-11-03 (Mon, 03 Nov 2025)
Changed paths:
M .gitignore
M CMakeLists.txt
M gui/images/check.png
M gui/images/us3-icon-128x128.png
M gui/images/us3-icon-16x16.png
M gui/images/us3-icon-256x256.png
M gui/images/us3-icon-32x32.png
M gui/images/us3-icon-48x48.png
M gui/images/us3-icon-512x512.png
M gui/images/us3-icon-64x64.png
M gui/images/us3-splash.png
M programs/us/CMakeLists.txt
M programs/us/us.cpp
M programs/us/us.h
Log Message:
-----------
fix: splash screen resizing
Commit: 77345534ee55741a3995fabe13f6faf8e1c5f881
https://github.com/ehb54/ultrascan3/commit/77345534ee55741a3995fabe13f6faf8e1c5f881
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-03 (Mon, 03 Nov 2025)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
Log Message:
-----------
[3]Prot_DEV -- dataDisk type of data to reuse in Prot Dev....
Commit: e2b73576bf779849331ede9bc596170ef3add7d8
https://github.com/ehb54/ultrascan3/commit/e2b73576bf779849331ede9bc596170ef3add7d8
Author: aaron <aaron at aucsolutions.com>
Date: 2025-11-04 (Tue, 04 Nov 2025)
Changed paths:
R etc/README
M etc/us3-GMP-icon-128x128.ico
M etc/us3-GMP-icon-128x128.png
M etc/us3-GMP-icon-128x128.xpm
M etc/us3-GMP-icon-32x32.ico
M etc/us3-GMP-icon-32x32.png
M etc/us3-GMP-icon-32x32.xpm
M etc/us3-GMP-icon-48x48.ico
M etc/us3-GMP-icon-48x48.png
M etc/us3-GMP-icon-48x48.xpm
M etc/us3-icon-128x128.ico
M etc/us3-icon-128x128.png
R etc/us3-icon-128x128.xpm
R etc/us3-icon-32x32.ico
M etc/us3-icon-32x32.png
M etc/us3-icon-32x32.xpm
M etc/us3-icon-48x48.ico
M etc/us3-icon-48x48.png
M etc/us3-icon-48x48.xpm
M etc/us3-icon.icns
M etc/us3-splash.png
Log Message:
-----------
fix: revert icons
Commit: 53c47afaad0a6c5e254d3d2ff216638d871f21a4
https://github.com/ehb54/ultrascan3/commit/53c47afaad0a6c5e254d3d2ff216638d871f21a4
Author: aaron <aaron at aucsolutions.com>
Date: 2025-11-04 (Tue, 04 Nov 2025)
Changed paths:
M scripts/build.sh
Log Message:
-----------
mod: build defaults to 90% cores and vcpkg in home directory
Commit: 7fc94237d997b68034bf17cbc314276cab5bc394
https://github.com/ehb54/ultrascan3/commit/7fc94237d997b68034bf17cbc314276cab5bc394
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-04 (Tue, 04 Nov 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_experiment/us_experiment.pro
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
[4]Prot_DEV -- Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: cff3d662e38213f7cc385ca99277c08dec6b43aa
https://github.com/ehb54/ultrascan3/commit/cff3d662e38213f7cc385ca99277c08dec6b43aa
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-04 (Tue, 04 Nov 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
Log Message:
-----------
[55]Prot_DEV -- Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: 33d884f14decc31d36934b0a03e70bbed41854c9
https://github.com/ehb54/ultrascan3/commit/33d884f14decc31d36934b0a03e70bbed41854c9
Author: aaron <aaron at aucsolutions.com>
Date: 2025-11-04 (Tue, 04 Nov 2025)
Changed paths:
M CMakeLists.txt
M admin/cmake/GenerateVersion.cmake
M programs/us/revision.sh
M programs/us/us.cpp
M programs/us_reporter_gmp/CMakeLists.txt
Log Message:
-----------
mod: set a single time and reuse
Commit: c280a617392dd55877185f3ece5a41202145aa63
https://github.com/ehb54/ultrascan3/commit/c280a617392dd55877185f3ece5a41202145aa63
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-04 (Tue, 04 Nov 2025)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
Log Message:
-----------
[6]Prot_DEV -- Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: 95598eae4d07bf9dc43bf02d6e58967bba5d282e
https://github.com/ehb54/ultrascan3/commit/95598eae4d07bf9dc43bf02d6e58967bba5d282e
Author: aaron <aaron at aucsolutions.com>
Date: 2025-11-04 (Tue, 04 Nov 2025)
Changed paths:
M programs/us/us.cpp
Log Message:
-----------
mod: additional contributors link
Commit: 08cb87c1bc238f8c201c7774797bb3d3de8bcf85
https://github.com/ehb54/ultrascan3/commit/08cb87c1bc238f8c201c7774797bb3d3de8bcf85
Author: aaron <aaron at aucsolutions.com>
Date: 2025-11-04 (Tue, 04 Nov 2025)
Changed paths:
M .gitignore
M CMakeLists.txt
M admin/cmake/GenerateVersion.cmake
R etc/README
M etc/us3-GMP-icon-128x128.ico
M etc/us3-GMP-icon-128x128.png
M etc/us3-GMP-icon-128x128.xpm
M etc/us3-GMP-icon-32x32.ico
M etc/us3-GMP-icon-32x32.png
M etc/us3-GMP-icon-32x32.xpm
M etc/us3-GMP-icon-48x48.ico
M etc/us3-GMP-icon-48x48.png
M etc/us3-GMP-icon-48x48.xpm
M etc/us3-icon-128x128.ico
M etc/us3-icon-128x128.png
R etc/us3-icon-128x128.xpm
R etc/us3-icon-32x32.ico
M etc/us3-icon-32x32.png
M etc/us3-icon-32x32.xpm
M etc/us3-icon-48x48.ico
M etc/us3-icon-48x48.png
M etc/us3-icon-48x48.xpm
M etc/us3-icon.icns
M etc/us3-splash.png
M gui/images/check.png
M gui/images/us3-icon-128x128.png
M gui/images/us3-icon-16x16.png
M gui/images/us3-icon-256x256.png
M gui/images/us3-icon-32x32.png
M gui/images/us3-icon-48x48.png
M gui/images/us3-icon-512x512.png
M gui/images/us3-icon-64x64.png
M gui/images/us3-splash.png
M gui/libus_gui.pro
M programs/us/CMakeLists.txt
M programs/us/revision.sh
M programs/us/us.cpp
M programs/us/us.pro
M programs/us_reporter_gmp/CMakeLists.txt
R scripts/bootstrap.sh
A scripts/build.sh
Log Message:
-----------
Merge remote-tracking branch 'origin/534-enhancement-version-upgrade' into 597-request-qt-6-migration-remove-qt-4-code
# Conflicts:
# programs/us/us.cpp
Commit: 1e35e7a3947fa08e0fd5e651641d80217b2f5337
https://github.com/ehb54/ultrascan3/commit/1e35e7a3947fa08e0fd5e651641d80217b2f5337
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-04 (Tue, 04 Nov 2025)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
[7]Prot_DEV -- Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: baf9c94ac111af67948654073232919352e65f28
https://github.com/ehb54/ultrascan3/commit/baf9c94ac111af67948654073232919352e65f28
Author: aaron <aaron at aucsolutions.com>
Date: 2025-11-04 (Tue, 04 Nov 2025)
Changed paths:
M programs/us/us.cpp
Log Message:
-----------
merge
Commit: 86e9df690a84fc07f0443a794532a3a16247575b
https://github.com/ehb54/ultrascan3/commit/86e9df690a84fc07f0443a794532a3a16247575b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-04 (Tue, 04 Nov 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[8]Prot_DEV -- Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: 47aced1a7b9dd464c9e3233c131bffd2e5a43590
https://github.com/ehb54/ultrascan3/commit/47aced1a7b9dd464c9e3233c131bffd2e5a43590
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-05 (Wed, 05 Nov 2025)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
[9]Prot_DEV -- Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: bf902b2991efbb3e2fc1009ef6800c635b5e7ea0
https://github.com/ehb54/ultrascan3/commit/bf902b2991efbb3e2fc1009ef6800c635b5e7ea0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-05 (Wed, 05 Nov 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
[10]Prot_DEV -- [run names for sunsequent PDs] Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: d24d57352af04940c3cf6e6d3c87044a795c1f32
https://github.com/ehb54/ultrascan3/commit/d24d57352af04940c3cf6e6d3c87044a795c1f32
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-05 (Wed, 05 Nov 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
[10a]Prot_DEV -- [run names for sunsequent PDs] Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: 21d57858d1f94bc1c02fbb7004faa197e3e44d77
https://github.com/ehb54/ultrascan3/commit/21d57858d1f94bc1c02fbb7004faa197e3e44d77
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-05 (Wed, 05 Nov 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
[11a]Prot_DEV -- [run names for sunsequent PDs] Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: 1b35ec93929d2ec945666589dfacd9390605a4c1
https://github.com/ehb54/ultrascan3/commit/1b35ec93929d2ec945666589dfacd9390605a4c1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-05 (Wed, 05 Nov 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
Log Message:
-----------
[12a]Prot_DEV -- [run names for sunsequent PDs] Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: 6e58c37381bd4ac5dea4ae822375df0d0cbc7b9a
https://github.com/ehb54/ultrascan3/commit/6e58c37381bd4ac5dea4ae822375df0d0cbc7b9a
Author: aaron <aaron at aucsolutions.com>
Date: 2025-11-05 (Wed, 05 Nov 2025)
Changed paths:
M .gitignore
Log Message:
-----------
fix: add one newline
Commit: 07982e368feea4dc848c21cf3ef6300332da9eb9
https://github.com/ehb54/ultrascan3/commit/07982e368feea4dc848c21cf3ef6300332da9eb9
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-05 (Wed, 05 Nov 2025)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
[13a]Prot_DEV -- [run names for sunsequent PDs] Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: 13f85df6ceb512735407e0c337d01f57429991dc
https://github.com/ehb54/ultrascan3/commit/13f85df6ceb512735407e0c337d01f57429991dc
Author: aaron <aaron at aucsolutions.com>
Date: 2025-11-05 (Wed, 05 Nov 2025)
Changed paths:
M CMakeLists.txt
M CMakePresets.json
M admin/cmake/GenerateVersion.cmake
M admin/cmake/Us3QrcCheck.cmake
M admin/cmake/Us3Resources.cmake
M admin/cmake/UsDefinesParser.cmake
M admin/cmake/platform-config.cmake
M doc/manual/CMakeLists.txt
M gui/CMakeLists.txt
M programs/us_autoflow_analysis/CMakeLists.txt
M programs/us_com_project/CMakeLists.txt
M programs/us_com_project_academic/CMakeLists.txt
M programs/us_experiment/CMakeLists.txt
M programs/us_fematch/CMakeLists.txt
M programs/us_fit_meniscus/CMakeLists.txt
M programs/us_mwl_species_fit/CMakeLists.txt
M programs/us_query_rmsd/CMakeLists.txt
M programs/us_reporter_gmp/CMakeLists.txt
M qwtplot3d/CMakeLists.txt
M test/CMakeLists.txt
M test/utils/CMakeLists.txt
M utils/CMakeLists.txt
Log Message:
-----------
fix: add one newline
Commit: 208da0fac807bb4eab07d69d438597dfb03b8a52
https://github.com/ehb54/ultrascan3/commit/208da0fac807bb4eab07d69d438597dfb03b8a52
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-11-05 (Wed, 05 Nov 2025)
Changed paths:
M .gitignore
A .gitmodules
M CMakeLists.txt
A CMakePresets.json
A admin/cmake/GenerateVersion.cmake
A admin/cmake/Us3QrcCheck.cmake
A admin/cmake/Us3Resources.cmake
A admin/cmake/UsDefinesParser.cmake
A admin/cmake/platform-config.cmake
A admin/cmake/triplets/x64-osx-dynamic.cmake
R admin/cmake/us_version.h.in
M admin/test/docker/Dockerfile
M alpha/us.cpp
A buildsys/vcpkg/overlay-ports/qwt/portfile.cmake
A buildsys/vcpkg/overlay-ports/qwt/vcpkg.json
A buildsys/vcpkg/overlay-ports/qwtplot3d/portfile.cmake
A buildsys/vcpkg/overlay-ports/qwtplot3d/qwtplot3d-config.cmake.in
A buildsys/vcpkg/overlay-ports/qwtplot3d/vcpkg.json
A doc/manual/CMakeLists.txt
M gui/CMakeLists.txt
M gui/libus_gui.pro
M gui/us_analysis_base2.cpp
M gui/us_analyte_gui.cpp
M gui/us_buffer_gui.cpp
M gui/us_combined_plots_parms_gui.cpp
M gui/us_edit_spectrum.cpp
M gui/us_extinctfitter_gui.cpp
M gui/us_extinction_gui.cpp
M gui/us_gui_settings.cpp
M gui/us_gui_settings.h
M gui/us_gui_util.cpp
R gui/us_mac_utils.c
R gui/us_mac_utils.h
M gui/us_new_spectrum.cpp
M gui/us_plot.cpp
M gui/us_plot.h
M gui/us_plot3d.cpp
M gui/us_report_general_gui.cpp
M gui/us_report_gui.cpp
M gui/us_run_details2.cpp
M gui/us_sassoc.cpp
M gui/us_scan_excl_gui.cpp
M gui/us_sim_params_gui.cpp
M gui/us_solution_gui.cpp
M gui/us_spectrodata.cpp
M gui/us_spectrodata.h
M gui/us_tmst_plot.cpp
M gui/us_widgets.cpp
M gui/us_widgets_dialog.cpp
R gui/us_win_utils.c
R gui/us_win_utils.h
R gui/us_window_message.cpp
R gui/us_window_message.h
R gui/us_x11_utils.c
R gui/us_x11_utils.h
M programs/CMakeLists.txt
A programs/us/CMakeLists.txt
M programs/us/revision.sh
M programs/us/us.cpp
M programs/us/us.pro
M programs/us/us_win_data.cpp
A programs/us/us_win_data.h
A programs/us_2dplot/CMakeLists.txt
M programs/us_2dplot/us_2dplot.cpp
M programs/us_2dplot/us_2dplot.h
A programs/us_2dsa/CMakeLists.txt
M programs/us_2dsa/us_2dsa.cpp
M programs/us_2dsa/us_analysis_control_2d.cpp
M programs/us_2dsa/us_resplot_2d.cpp
M programs/us_2dsa/us_show_norm.cpp
A programs/us_abde/CMakeLists.txt
M programs/us_abde/us_norm_profile.cpp
A programs/us_analysis_profile/CMakeLists.txt
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_anapro_utils.cpp
A programs/us_analyte/CMakeLists.txt
A programs/us_assign_reviewers_gmp/CMakeLists.txt
A programs/us_astfem_sim/CMakeLists.txt
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_astfem_sim/us_clipdata.h
A programs/us_audit_trail_gmp/CMakeLists.txt
M programs/us_autoflow_analysis/CMakeLists.txt
A programs/us_buffer/CMakeLists.txt
A programs/us_buoyancy/CMakeLists.txt
M programs/us_buoyancy/us_buoyancy.cpp
A programs/us_colorgradient/CMakeLists.txt
M programs/us_com_project/CMakeLists.txt
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project_academic/CMakeLists.txt
A programs/us_combine_models/CMakeLists.txt
A programs/us_config/CMakeLists.txt
M programs/us_config/us_color.cpp
A programs/us_convert/CMakeLists.txt
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_intensity.cpp
A programs/us_dcdt/CMakeLists.txt
M programs/us_dcdt/us_dcdt.cpp
A programs/us_ddist_combine/CMakeLists.txt
M programs/us_ddist_combine/us_ddist_combine.cpp
A programs/us_density_match/CMakeLists.txt
A programs/us_dmga_init/CMakeLists.txt
A programs/us_edit/CMakeLists.txt
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit_scan.cpp
M programs/us_edit/us_ri_noise.cpp
A programs/us_equiltime/CMakeLists.txt
M programs/us_equiltime/us_equiltime.cpp
A programs/us_esigner_gmp/CMakeLists.txt
M programs/us_experiment/CMakeLists.txt
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_proto_ranges.cpp
A programs/us_export_legacy/CMakeLists.txt
M programs/us_export_legacy/us_export.cpp
A programs/us_extinction/CMakeLists.txt
A programs/us_fds_filemanager/CMakeLists.txt
M programs/us_fds_filemanager/us_fds_filemanager.cpp
M programs/us_fematch/CMakeLists.txt
M programs/us_fematch/us_adv_dmgamc.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_fematch/us_resplot_fem.cpp
M programs/us_fit_meniscus/CMakeLists.txt
M programs/us_fit_meniscus/us_fit_meniscus.cpp
A programs/us_ga_init/CMakeLists.txt
M programs/us_ga_init/us_ga_init.cpp
A programs/us_globalequil/CMakeLists.txt
M programs/us_globalequil/us_eqfit_control.cpp
M programs/us_globalequil/us_eqhistogram.cpp
M programs/us_globalequil/us_globalequil.cpp
A programs/us_grid_editor/CMakeLists.txt
A programs/us_helpdaemon/CMakeLists.txt
A programs/us_integral/CMakeLists.txt
A programs/us_investigator/CMakeLists.txt
A programs/us_legacy_converter/CMakeLists.txt
A programs/us_license/CMakeLists.txt
A programs/us_manage_data/CMakeLists.txt
A programs/us_model_gui/CMakeLists.txt
A programs/us_modelmetrics/CMakeLists.txt
M programs/us_modelmetrics/us_modelmetrics.cpp
A programs/us_mpi_analysis/CMakeLists.txt
M programs/us_mwl_species_fit/CMakeLists.txt
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
A programs/us_mwl_species_sim/CMakeLists.txt
M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
A programs/us_mwl_spectra/CMakeLists.txt
M programs/us_mwl_spectra/us_mwl_spectra.cpp
A programs/us_mwlr_viewer/CMakeLists.txt
M programs/us_mwlr_viewer/us_mwlr_viewer.cpp
A programs/us_pcsa/CMakeLists.txt
M programs/us_pcsa/us_mlplot.cpp
M programs/us_pcsa/us_pcsa.cpp
M programs/us_pcsa/us_resplot_pc.cpp
M programs/us_pcsa/us_rpscan.cpp
A programs/us_predict1/CMakeLists.txt
A programs/us_predict2/CMakeLists.txt
A programs/us_project/CMakeLists.txt
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
A programs/us_pseudo3d_combine/CMakeLists.txt
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
A programs/us_pseudo_absorbance/CMakeLists.txt
M programs/us_query_rmsd/CMakeLists.txt
A programs/us_ramp/CMakeLists.txt
M programs/us_ramp/us_intensity_ra.cpp
M programs/us_ramp/us_ramp_gui.cpp
R programs/us_rasmol_control/us_rasmol_control.cpp
R programs/us_rasmol_control/us_rasmol_control.h
R programs/us_rasmol_control/us_rasmol_control.pro
A programs/us_reassign_reviewers_gmp/CMakeLists.txt
A programs/us_reporter/CMakeLists.txt
M programs/us_reporter_gmp/CMakeLists.txt
M programs/us_reporter_gmp/us_reporter_gmp.cpp
A programs/us_rotor/CMakeLists.txt
A programs/us_rotor_calibration/CMakeLists.txt
M programs/us_rotor_calibration/us_rotor_calibration.cpp
A programs/us_sassoc/CMakeLists.txt
A programs/us_second_moment/CMakeLists.txt
M programs/us_second_moment/us_second_moment.cpp
A programs/us_solution/CMakeLists.txt
A programs/us_spectrum/CMakeLists.txt
M programs/us_spectrum/us_spectrum.cpp
A programs/us_tmst_viewer/CMakeLists.txt
A programs/us_vhw_combine/CMakeLists.txt
M programs/us_vhw_combine/us_vhw_combine.cpp
A programs/us_vhw_enhanced/CMakeLists.txt
M programs/us_vhw_enhanced/us_distrib_plot.cpp
M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
A programs/us_xpn_viewer/CMakeLists.txt
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M qwtplot3d/CMakeLists.txt
M qwtplot3d/include/qwt3d_openglhelper.h
A scripts/build.sh
M test-docker.sh
M test/CMakeLists.txt
M test/utils/CMakeLists.txt
M test/utils/test_us_ana_profile.cpp
M utils/CMakeLists.txt
M utils/us_defines.h
A vcpkg
A vcpkg-configuration.json
A vcpkg.json
Log Message:
-----------
Merge pull request #301 from ehb54/597-request-qt-6-migration-remove-qt-4-code
597 request qt 6 migration remove qt 4 code
Commit: c8df9d077992267f115dc3a8c6d6c57928fcb568
https://github.com/ehb54/ultrascan3/commit/c8df9d077992267f115dc3a8c6d6c57928fcb568
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-06 (Thu, 06 Nov 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
Log Message:
-----------
[15a]Prot_DEV -- [run names for sunsequent PDs] Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: c1590729931d88a83cc57cdd346ccb2ee12835b4
https://github.com/ehb54/ultrascan3/commit/c1590729931d88a83cc57cdd346ccb2ee12835b4
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-06 (Thu, 06 Nov 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[16a]Prot_DEV -- [run names for sunsequent PDs] Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: 7684ca675c735b07511e83617000346fe1a4731c
https://github.com/ehb54/ultrascan3/commit/7684ca675c735b07511e83617000346fe1a4731c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-08 (Sat, 08 Nov 2025)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
[17a]Prot_DEV -- [run names for sunsequent PDs] Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....
Commit: 33dfedcbd83e81f3116f6e0051eb43b762a00ce1
https://github.com/ehb54/ultrascan3/commit/33dfedcbd83e81f3116f6e0051eb43b762a00ce1
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-14 (Fri, 14 Nov 2025)
Changed paths:
M gui/us_plot.cpp
M gui/us_plot.h
Log Message:
-----------
Refactor `US_Plot` and related classes for modern C++ standards and improved maintainability
Replaced raw pointers with `nullptr`, leveraged modern Qt signal-slot syntax, and tightened const correctness throughout. Removed legacy Qt version checks and redundant logic for clean and readable code.
Commit: ef64cab1de21434fe0f5d43a73d8f500c37bbfed
https://github.com/ehb54/ultrascan3/commit/ef64cab1de21434fe0f5d43a73d8f500c37bbfed
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-14 (Fri, 14 Nov 2025)
Changed paths:
M gui/us_plot.cpp
Log Message:
-----------
Fix incorrect variable usage and remove redundant `const` specifiers in `US_Plot`
Corrected variable mismatch in `connect` call for canvas color updates. Replaced redundant `const QDir` declarations with `QDir` to align with proper usage. Initialized `selSymbol` with `QwtSymbol::NoSymbol` to prevent uninitialized access.
Commit: aa4ace94a7d0acc500543323e466222bb30c02c7
https://github.com/ehb54/ultrascan3/commit/aa4ace94a7d0acc500543323e466222bb30c02c7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-14 (Fri, 14 Nov 2025)
Changed paths:
M gui/us_plot.cpp
M gui/us_plot.h
Log Message:
-----------
Merge pull request #310 from ehb54/lukas/us_plot_config
Fix us_plot config causing Curves to get symboles
Commit: 4db2218d24fbf448f58e228e33c6634b2ddbe429
https://github.com/ehb54/ultrascan3/commit/4db2218d24fbf448f58e228e33c6634b2ddbe429
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-11-16 (Sun, 16 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
A admin/codeql/docker/local.pri.gui-qt6
Log Message:
-----------
issue 649, testing codeql qt6 build
Commit: 7efd56b0064621de09905cb9d76a56f0a1c83b77
https://github.com/ehb54/ultrascan3/commit/7efd56b0064621de09905cb9d76a56f0a1c83b77
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-11-16 (Sun, 16 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
issue 649, testing codeql qt6 build
Commit: 0b5dfd84a4ed2f5328e79bef342f3fec70845310
https://github.com/ehb54/ultrascan3/commit/0b5dfd84a4ed2f5328e79bef342f3fec70845310
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-11-16 (Sun, 16 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
codeql workflow remove commented section
Commit: 522a7b53313a7a9d4d13450bbaa79b482379ab0a
https://github.com/ehb54/ultrascan3/commit/522a7b53313a7a9d4d13450bbaa79b482379ab0a
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-11-16 (Sun, 16 Nov 2025)
Changed paths:
M admin/codeql/docker/local.pri.gui-qt6
Log Message:
-----------
Remove openglwidgets from QT configuration
Commit: 5e08ea6d12eced7c9aafcaeb63be2b6fc7fd227e
https://github.com/ehb54/ultrascan3/commit/5e08ea6d12eced7c9aafcaeb63be2b6fc7fd227e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-16 (Sun, 16 Nov 2025)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M utils/us_run_protocol.h
Log Message:
-----------
GMP [dataDisk]: 1. EXP. -- init. steps for dealing with arbitrary selection of channels in uploaded data...
Commit: 637512db487f7224a48db9fddadac0121cd0ec6e
https://github.com/ehb54/ultrascan3/commit/637512db487f7224a48db9fddadac0121cd0ec6e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-17 (Mon, 17 Nov 2025)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
Log Message:
-----------
GMP [dataDisk]: 1. EXP. -- [MODS to generated prtotocol check before submission] init. steps for dealing with arbitrary selection of channels in uploaded data...
Commit: 31bffce6f2258893d277cf9e2ab6b5a2290acd70
https://github.com/ehb54/ultrascan3/commit/31bffce6f2258893d277cf9e2ab6b5a2290acd70
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-17 (Mon, 17 Nov 2025)
Changed paths:
M .github/workflows/unit-tests.yml
Log Message:
-----------
Update unit-tests.yml to include additional paths
Commit: 17ce4b6fb272848fdced6c862bae217de71652d8
https://github.com/ehb54/ultrascan3/commit/17ce4b6fb272848fdced6c862bae217de71652d8
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-11-18 (Tue, 18 Nov 2025)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M utils/us_run_protocol.h
Log Message:
-----------
Merge pull request #316 from ehb54/alexey-dev-issue650
Alexey dev issue650: dataDisk submission with arbitrary selection of channels
Commit: b0f38f43b87f21495a47b399bf731e3b11812b15
https://github.com/ehb54/ultrascan3/commit/b0f38f43b87f21495a47b399bf731e3b11812b15
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-18 (Tue, 18 Nov 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP : 6.REPORTER -- ranges for CG-models...
Commit: 6c646f633296c0b2cdf20178c282494f364c1846
https://github.com/ehb54/ultrascan3/commit/6c646f633296c0b2cdf20178c282494f364c1846
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-18 (Tue, 18 Nov 2025)
Changed paths:
M .gitignore
A .gitmodules
M CMakeLists.txt
A CMakePresets.json
A admin/cmake/GenerateVersion.cmake
A admin/cmake/Us3QrcCheck.cmake
A admin/cmake/Us3Resources.cmake
A admin/cmake/UsDefinesParser.cmake
A admin/cmake/platform-config.cmake
A admin/cmake/triplets/x64-osx-dynamic.cmake
R admin/cmake/us_version.h.in
M admin/test/docker/Dockerfile
M alpha/us.cpp
A buildsys/vcpkg/overlay-ports/qwt/portfile.cmake
A buildsys/vcpkg/overlay-ports/qwt/vcpkg.json
A buildsys/vcpkg/overlay-ports/qwtplot3d/portfile.cmake
A buildsys/vcpkg/overlay-ports/qwtplot3d/qwtplot3d-config.cmake.in
A buildsys/vcpkg/overlay-ports/qwtplot3d/vcpkg.json
A doc/manual/CMakeLists.txt
M gui/CMakeLists.txt
M gui/libus_gui.pro
M gui/us_analysis_base2.cpp
M gui/us_analyte_gui.cpp
M gui/us_buffer_gui.cpp
M gui/us_combined_plots_parms_gui.cpp
M gui/us_edit_spectrum.cpp
M gui/us_extinctfitter_gui.cpp
M gui/us_extinction_gui.cpp
M gui/us_gui_settings.cpp
M gui/us_gui_settings.h
M gui/us_gui_util.cpp
R gui/us_mac_utils.c
R gui/us_mac_utils.h
M gui/us_new_spectrum.cpp
M gui/us_plot.cpp
M gui/us_plot.h
M gui/us_plot3d.cpp
M gui/us_report_general_gui.cpp
M gui/us_report_gui.cpp
M gui/us_run_details2.cpp
M gui/us_sassoc.cpp
M gui/us_scan_excl_gui.cpp
M gui/us_sim_params_gui.cpp
M gui/us_solution_gui.cpp
M gui/us_spectrodata.cpp
M gui/us_spectrodata.h
M gui/us_tmst_plot.cpp
M gui/us_widgets.cpp
M gui/us_widgets_dialog.cpp
R gui/us_win_utils.c
R gui/us_win_utils.h
R gui/us_window_message.cpp
R gui/us_window_message.h
R gui/us_x11_utils.c
R gui/us_x11_utils.h
M programs/CMakeLists.txt
A programs/us/CMakeLists.txt
M programs/us/revision.sh
M programs/us/us.cpp
M programs/us/us.pro
M programs/us/us_win_data.cpp
A programs/us/us_win_data.h
A programs/us_2dplot/CMakeLists.txt
M programs/us_2dplot/us_2dplot.cpp
M programs/us_2dplot/us_2dplot.h
A programs/us_2dsa/CMakeLists.txt
M programs/us_2dsa/us_2dsa.cpp
M programs/us_2dsa/us_analysis_control_2d.cpp
M programs/us_2dsa/us_resplot_2d.cpp
M programs/us_2dsa/us_show_norm.cpp
A programs/us_abde/CMakeLists.txt
M programs/us_abde/us_norm_profile.cpp
A programs/us_analysis_profile/CMakeLists.txt
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_anapro_utils.cpp
A programs/us_analyte/CMakeLists.txt
A programs/us_assign_reviewers_gmp/CMakeLists.txt
A programs/us_astfem_sim/CMakeLists.txt
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_astfem_sim/us_clipdata.h
A programs/us_audit_trail_gmp/CMakeLists.txt
M programs/us_autoflow_analysis/CMakeLists.txt
A programs/us_buffer/CMakeLists.txt
A programs/us_buoyancy/CMakeLists.txt
M programs/us_buoyancy/us_buoyancy.cpp
A programs/us_colorgradient/CMakeLists.txt
M programs/us_com_project/CMakeLists.txt
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project_academic/CMakeLists.txt
A programs/us_combine_models/CMakeLists.txt
A programs/us_config/CMakeLists.txt
M programs/us_config/us_color.cpp
A programs/us_convert/CMakeLists.txt
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_intensity.cpp
A programs/us_dcdt/CMakeLists.txt
M programs/us_dcdt/us_dcdt.cpp
A programs/us_ddist_combine/CMakeLists.txt
M programs/us_ddist_combine/us_ddist_combine.cpp
A programs/us_density_match/CMakeLists.txt
A programs/us_dmga_init/CMakeLists.txt
A programs/us_edit/CMakeLists.txt
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit_scan.cpp
M programs/us_edit/us_ri_noise.cpp
A programs/us_equiltime/CMakeLists.txt
M programs/us_equiltime/us_equiltime.cpp
A programs/us_esigner_gmp/CMakeLists.txt
M programs/us_experiment/CMakeLists.txt
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_experiment/us_proto_ranges.cpp
A programs/us_export_legacy/CMakeLists.txt
M programs/us_export_legacy/us_export.cpp
A programs/us_extinction/CMakeLists.txt
A programs/us_fds_filemanager/CMakeLists.txt
M programs/us_fds_filemanager/us_fds_filemanager.cpp
M programs/us_fematch/CMakeLists.txt
M programs/us_fematch/us_adv_dmgamc.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_fematch/us_resplot_fem.cpp
M programs/us_fit_meniscus/CMakeLists.txt
M programs/us_fit_meniscus/us_fit_meniscus.cpp
A programs/us_ga_init/CMakeLists.txt
M programs/us_ga_init/us_ga_init.cpp
A programs/us_globalequil/CMakeLists.txt
M programs/us_globalequil/us_eqfit_control.cpp
M programs/us_globalequil/us_eqhistogram.cpp
M programs/us_globalequil/us_globalequil.cpp
A programs/us_grid_editor/CMakeLists.txt
A programs/us_helpdaemon/CMakeLists.txt
A programs/us_integral/CMakeLists.txt
A programs/us_investigator/CMakeLists.txt
A programs/us_legacy_converter/CMakeLists.txt
A programs/us_license/CMakeLists.txt
A programs/us_manage_data/CMakeLists.txt
A programs/us_model_gui/CMakeLists.txt
A programs/us_modelmetrics/CMakeLists.txt
M programs/us_modelmetrics/us_modelmetrics.cpp
A programs/us_mpi_analysis/CMakeLists.txt
M programs/us_mwl_species_fit/CMakeLists.txt
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
A programs/us_mwl_species_sim/CMakeLists.txt
M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
A programs/us_mwl_spectra/CMakeLists.txt
M programs/us_mwl_spectra/us_mwl_spectra.cpp
A programs/us_mwlr_viewer/CMakeLists.txt
M programs/us_mwlr_viewer/us_mwlr_viewer.cpp
A programs/us_pcsa/CMakeLists.txt
M programs/us_pcsa/us_mlplot.cpp
M programs/us_pcsa/us_pcsa.cpp
M programs/us_pcsa/us_resplot_pc.cpp
M programs/us_pcsa/us_rpscan.cpp
A programs/us_predict1/CMakeLists.txt
A programs/us_predict2/CMakeLists.txt
A programs/us_project/CMakeLists.txt
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
A programs/us_pseudo3d_combine/CMakeLists.txt
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
A programs/us_pseudo_absorbance/CMakeLists.txt
M programs/us_query_rmsd/CMakeLists.txt
A programs/us_ramp/CMakeLists.txt
M programs/us_ramp/us_intensity_ra.cpp
M programs/us_ramp/us_ramp_gui.cpp
R programs/us_rasmol_control/us_rasmol_control.cpp
R programs/us_rasmol_control/us_rasmol_control.h
R programs/us_rasmol_control/us_rasmol_control.pro
A programs/us_reassign_reviewers_gmp/CMakeLists.txt
A programs/us_reporter/CMakeLists.txt
M programs/us_reporter_gmp/CMakeLists.txt
M programs/us_reporter_gmp/us_reporter_gmp.cpp
A programs/us_rotor/CMakeLists.txt
A programs/us_rotor_calibration/CMakeLists.txt
M programs/us_rotor_calibration/us_rotor_calibration.cpp
A programs/us_sassoc/CMakeLists.txt
A programs/us_second_moment/CMakeLists.txt
M programs/us_second_moment/us_second_moment.cpp
A programs/us_solution/CMakeLists.txt
A programs/us_spectrum/CMakeLists.txt
M programs/us_spectrum/us_spectrum.cpp
A programs/us_tmst_viewer/CMakeLists.txt
A programs/us_vhw_combine/CMakeLists.txt
M programs/us_vhw_combine/us_vhw_combine.cpp
A programs/us_vhw_enhanced/CMakeLists.txt
M programs/us_vhw_enhanced/us_distrib_plot.cpp
M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
A programs/us_xpn_viewer/CMakeLists.txt
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M qwtplot3d/CMakeLists.txt
M qwtplot3d/include/qwt3d_openglhelper.h
A scripts/build.sh
M test-docker.sh
M test/CMakeLists.txt
M test/utils/CMakeLists.txt
M test/utils/test_us_ana_profile.cpp
M utils/CMakeLists.txt
M utils/us_defines.h
M utils/us_run_protocol.h
A vcpkg
A vcpkg-configuration.json
A vcpkg.json
Log Message:
-----------
Merge branch 'main' into alexey-dev-issue608
Commit: 0ebfc3ee220014a56edc62db5dfdb61cdf14cc37
https://github.com/ehb54/ultrascan3/commit/0ebfc3ee220014a56edc62db5dfdb61cdf14cc37
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-18 (Tue, 18 Nov 2025)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP-PROT.DEV -- extend the case of re-processing dataDisk runs for arbitrary channels chases...
Commit: b08b1c4672f375b1df4d08eb2e61fd656c9d406d
https://github.com/ehb54/ultrascan3/commit/b08b1c4672f375b1df4d08eb2e61fd656c9d406d
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-11-18 (Tue, 18 Nov 2025)
Changed paths:
A .github/workflows/.yamllint.yml
M .github/workflows/codeql-analysis.yml
A .github/workflows/doc-build.yml
M admin/codeql/docker/local.pri.gui
R admin/codeql/docker/local.pri.gui-qt6
M admin/codeql/docker/local.pri.mpi
M admin/codeql/docker/local.pri.somo
Log Message:
-----------
codeql updates to main branch
Commit: 71e029d4b0191c6f9e49f61052bb4994b733a90e
https://github.com/ehb54/ultrascan3/commit/71e029d4b0191c6f9e49f61052bb4994b733a90e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-18 (Tue, 18 Nov 2025)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
Log Message:
-----------
[1]GMP-PROT.DEV -- extend the case of re-processing dataDisk runs for arbitrary channels chases...
Commit: f49d8cf364400df6d8104e5fd915d79df22d8638
https://github.com/ehb54/ultrascan3/commit/f49d8cf364400df6d8104e5fd915d79df22d8638
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-18 (Tue, 18 Nov 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[2]GMP-PROT.DEV -- extend the case of re-processing dataDisk runs for arbitrary channels chases...
Commit: 8f6a939aba51bb5c70c66d760e2242304e659c0f
https://github.com/ehb54/ultrascan3/commit/8f6a939aba51bb5c70c66d760e2242304e659c0f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-18 (Tue, 18 Nov 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[3]GMP-PROT.DEV -- extend the case of re-processing dataDisk runs for arbitrary channels chases...
Commit: 0cd1156f3fead2acf306d704cca3686a6a2ec32f
https://github.com/ehb54/ultrascan3/commit/0cd1156f3fead2acf306d704cca3686a6a2ec32f
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-11-18 (Tue, 18 Nov 2025)
Changed paths:
A .github/workflows/.yamllint.yml
M .github/workflows/codeql-analysis.yml
A .github/workflows/doc-build.yml
M admin/codeql/docker/local.pri.gui
M admin/codeql/docker/local.pri.mpi
M admin/codeql/docker/local.pri.somo
Log Message:
-----------
Merge pull request #313 from ehb54/ehb54-issue-649
issue 649, testing codeql qt6 build
Commit: 5400614d6c78af525f22b1f858362a99edc462a1
https://github.com/ehb54/ultrascan3/commit/5400614d6c78af525f22b1f858362a99edc462a1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-18 (Tue, 18 Nov 2025)
Changed paths:
A .github/workflows/.yamllint.yml
M .github/workflows/codeql-analysis.yml
A .github/workflows/doc-build.yml
M admin/codeql/docker/local.pri.gui
M admin/codeql/docker/local.pri.mpi
M admin/codeql/docker/local.pri.somo
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M utils/us_run_protocol.h
Log Message:
-----------
Merge pull request #319 from ehb54/main
add main stuff to alexey-dev-issue651
Commit: d40493020d965b05f43ed5c8a2eb1daaf5166a48
https://github.com/ehb54/ultrascan3/commit/d40493020d965b05f43ed5c8a2eb1daaf5166a48
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_ddist_combine.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP 6. REPORT -- for runs based on Custom-Grid model, use correct ranges for ind. and combined distributions...
Commit: 8f345295dc5803000521a47ad53aa246df51eff7
https://github.com/ehb54/ultrascan3/commit/8f345295dc5803000521a47ad53aa246df51eff7
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
A .github/workflows/.yamllint.yml
M .github/workflows/codeql-analysis.yml
A .github/workflows/doc-build.yml
M admin/codeql/docker/local.pri.gui
M admin/codeql/docker/local.pri.mpi
M admin/codeql/docker/local.pri.somo
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M utils/us_run_protocol.h
Log Message:
-----------
Merge pull request #320 from ehb54/main
update to main
Commit: 129b8d9184d5cab1189cca7b84574bf7e97dca76
https://github.com/ehb54/ultrascan3/commit/129b8d9184d5cab1189cca7b84574bf7e97dca76
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Refactor CodeQL workflow for improved caching and builds
Commit: 793e12c735495da5c5b6deed3355e2428e6c2a16
https://github.com/ehb54/ultrascan3/commit/793e12c735495da5c5b6deed3355e2428e6c2a16
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Simplify build step in CodeQL analysis workflow
Removed ccache setup and git configuration from the build step.
Commit: 0f76a4bf8a6ae54cd386ba2a645b0994b3b8b8b5
https://github.com/ehb54/ultrascan3/commit/0f76a4bf8a6ae54cd386ba2a645b0994b3b8b8b5
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Refactor CodeQL analysis workflow
Refactor CodeQL analysis workflow to improve target calculation and build steps.
Commit: 6c80777b7287a29fe978526475e6f099ca3ef827
https://github.com/ehb54/ultrascan3/commit/6c80777b7287a29fe978526475e6f099ca3ef827
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Refactor CodeQL workflow to simplify caching and builds
Removed caching steps for ccache, utils, qwtplot3d, and gui. Added build steps for utils, qwtplot3d, and gui using qmake.
Commit: 27c760f8c268e77d5038469cfd40243fb274f2d1
https://github.com/ehb54/ultrascan3/commit/27c760f8c268e77d5038469cfd40243fb274f2d1
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M .github/workflows/unit-tests.yml
Log Message:
-----------
Update unit-tests.yml to remove path filters for push
Removed specific path filters for push events in unit-tests workflow.
Commit: 2465409a96b820d237f9bf0c3b09b12f859060d7
https://github.com/ehb54/ultrascan3/commit/2465409a96b820d237f9bf0c3b09b12f859060d7
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
Update static analysis workflow trigger paths
Removed specific path triggers for push events in static analysis workflow.
Commit: c1ac9c0b43cdde1480834d2fb742344b9649144f
https://github.com/ehb54/ultrascan3/commit/c1ac9c0b43cdde1480834d2fb742344b9649144f
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
R .github/workflows/.yamllint.yml
A admin/linting/cmake/.cmake-format.yaml
A admin/linting/cmake/README.md
A admin/linting/yaml/.yamllint.yml
Log Message:
-----------
Document CMake formatter
Commit: 391ac4d011a289eafa902e9d56eb4382491f0b66
https://github.com/ehb54/ultrascan3/commit/391ac4d011a289eafa902e9d56eb4382491f0b66
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
M .github/workflows/static-analysis.yml
Log Message:
-----------
Updating nproc
Commit: ea7559d6bcd810ed7a176871e33f0d36b49152e2
https://github.com/ehb54/ultrascan3/commit/ea7559d6bcd810ed7a176871e33f0d36b49152e2
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
M .github/workflows/unit-tests.yml
M admin/linting/cmake/.cmake-format.yaml
M admin/linting/cmake/README.md
Log Message:
-----------
Fix minor comments
Commit: 6e94734ca883da80e058cf4e51dee4474e9863e5
https://github.com/ehb54/ultrascan3/commit/6e94734ca883da80e058cf4e51dee4474e9863e5
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_edit/us_edit.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment.pro
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
Merge pull request #305 from ehb54/alexey-dev-issue608
Alexey dev issue608: Prot. Dev. for DataDisk data types
Commit: 5ff2d239588616635adbdfaf775949a91f5d7565
https://github.com/ehb54/ultrascan3/commit/5ff2d239588616635adbdfaf775949a91f5d7565
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M .github/workflows/doc-build.yml
M .github/workflows/static-analysis.yml
M .github/workflows/unit-tests.yml
Log Message:
-----------
Update checkout action version
Commit: 321b58c1347db9be2b3ef6cbb24e94e5e4119dfa
https://github.com/ehb54/ultrascan3/commit/321b58c1347db9be2b3ef6cbb24e94e5e4119dfa
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M .github/workflows/doc-build.yml
Log Message:
-----------
fix branches
Commit: aad9ec569ffb658a9035b4b0f5c75d8fc050fa1b
https://github.com/ehb54/ultrascan3/commit/aad9ec569ffb658a9035b4b0f5c75d8fc050fa1b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-19 (Wed, 19 Nov 2025)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[also aspect ratio of the plots]GMP 6. REPORT -- for runs based on Custom-Grid model, use correct ranges for ind. and combined distributions...
Commit: 5c92b751327dc3f2908415ade46f68cc6ae21f7f
https://github.com/ehb54/ultrascan3/commit/5c92b751327dc3f2908415ade46f68cc6ae21f7f
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-20 (Thu, 20 Nov 2025)
Changed paths:
M gui/libus_gui.pro
A gui/us_convert_gui.cpp
A gui/us_convert_gui.h
A gui/us_experiment_gui.cpp
A gui/us_experiment_gui.h
A gui/us_get_run.cpp
A gui/us_get_run.h
A gui/us_intensity.cpp
A gui/us_intensity.h
A gui/us_select_triples.cpp
A gui/us_select_triples.h
A gui/us_selectbox.cpp
A gui/us_selectbox.h
M programs/us_autoflow_analysis/CMakeLists.txt
M programs/us_autoflow_analysis/us_autoflow_analysis.h
M programs/us_autoflow_analysis/us_autoflow_analysis.pro
M programs/us_com_project/CMakeLists.txt
M programs/us_com_project/us_com_project.pro
M programs/us_com_project/us_com_project_gui.h
M programs/us_com_project_academic/CMakeLists.txt
M programs/us_com_project_academic/us_com_project_academic.pro
M programs/us_convert/CMakeLists.txt
R programs/us_convert/us_convert.cpp
R programs/us_convert/us_convert.h
M programs/us_convert/us_convert.pro
R programs/us_convert/us_convert_gui.cpp
R programs/us_convert/us_convert_gui.h
R programs/us_convert/us_convertio.cpp
R programs/us_convert/us_convertio.h
R programs/us_convert/us_experiment.cpp
R programs/us_convert/us_experiment.h
R programs/us_convert/us_experiment_gui.cpp
R programs/us_convert/us_experiment_gui.h
R programs/us_convert/us_get_run.cpp
R programs/us_convert/us_get_run.h
R programs/us_convert/us_intensity.cpp
R programs/us_convert/us_intensity.h
R programs/us_convert/us_select_triples.cpp
R programs/us_convert/us_select_triples.h
R programs/us_convert/us_selectbox.cpp
R programs/us_convert/us_selectbox.h
M programs/us_experiment/CMakeLists.txt
M programs/us_experiment/us_experiment.pro
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_fematch/CMakeLists.txt
M programs/us_fematch/us_fematch.pro
M programs/us_legacy_converter/CMakeLists.txt
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
M programs/us_legacy_converter/us_legacy_converter.pro
M programs/us_protocol_dev/CMakeLists.txt
M programs/us_protocol_dev/us_protocol_dev.pro
M programs/us_protocol_dev/us_protocol_dev_gui.h
M programs/us_query_rmsd/CMakeLists.txt
M programs/us_query_rmsd/us_query_rmsd.pro
M programs/us_reporter_gmp/CMakeLists.txt
M programs/us_reporter_gmp/us_reporter_gmp.pro
M programs/us_xpn_viewer/us_xpn_viewer.pro
M utils/CMakeLists.txt
M utils/libus_utils.pro
A utils/us_convert.cpp
A utils/us_convert.h
A utils/us_convertio.cpp
A utils/us_convertio.h
A utils/us_experiment.cpp
A utils/us_experiment.h
Log Message:
-----------
Move general code used by multiple programs to libraries. Update CMakeLists.txt and *.pro files accordingly
Commit: 22b358bc7c50111c979137831392022b5920ece3
https://github.com/ehb54/ultrascan3/commit/22b358bc7c50111c979137831392022b5920ece3
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-20 (Thu, 20 Nov 2025)
Changed paths:
M test-docker.sh
Log Message:
-----------
- Add `US3_BUILD_PROGRAMS` flag to disable program builds in docker tests
- Redirect build output to `tee build.log` for better log visibility
- Ensure consistent newline at end of script
Commit: eed16179a8828fcdad33d10893011f872744078a
https://github.com/ehb54/ultrascan3/commit/eed16179a8828fcdad33d10893011f872744078a
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-20 (Thu, 20 Nov 2025)
Changed paths:
M CMakeLists.txt
M programs/us_fit_meniscus/CMakeLists.txt
M utils/CMakeLists.txt
Log Message:
-----------
- Fix variable mismatches in `BUILD_TESTING` conditions across CMakeLists.
- Disable `US3_BUILD_PROGRAMS` in `TEST` profile to align with expected behavior.
- Update logging for `BUILD_TESTING` status in CMake output.
- Remove redundant `US3_BUILD_TESTS` conditions for cleaner logic.
Commit: 342c572ec5c13739d56e6a45922eeddd2168d777
https://github.com/ehb54/ultrascan3/commit/342c572ec5c13739d56e6a45922eeddd2168d777
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-20 (Thu, 20 Nov 2025)
Changed paths:
M gui/us_convert_gui.cpp
M programs/us_legacy_converter/us_legacy_converter.cpp
M test-docker.sh
Log Message:
-----------
Fix typos
Commit: 8ec56186a4b601669d87ed939d3ac1f4e7057561
https://github.com/ehb54/ultrascan3/commit/8ec56186a4b601669d87ed939d3ac1f4e7057561
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-20 (Thu, 20 Nov 2025)
Changed paths:
M utils/us_convert.cpp
M utils/us_convert.h
Log Message:
-----------
- Apply `const QString&` to parameters in `readLegacyData` for efficiency
- Remove unused `mixed_type` variable and redundant assignment of `runType`
- Clean up debug statements for clearer logging
Commit: 5cf42202af6d7f5544a2cf1111d44f5f1a232777
https://github.com/ehb54/ultrascan3/commit/5cf42202af6d7f5544a2cf1111d44f5f1a232777
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-20 (Thu, 20 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Refactor CodeQL analysis workflow conditions
Removed specific file paths from pull request triggers and updated conditions for CodeQL analysis steps.
Commit: 3f486acaa2a2e5b708f257acf949e90d1b042bbc
https://github.com/ehb54/ultrascan3/commit/3f486acaa2a2e5b708f257acf949e90d1b042bbc
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-20 (Thu, 20 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Rename analysis job for GUI programs
Commit: a81ad04f934cbf1c4a0983859a74441fa4aaae0e
https://github.com/ehb54/ultrascan3/commit/a81ad04f934cbf1c4a0983859a74441fa4aaae0e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-20 (Thu, 20 Nov 2025)
Changed paths:
M gui/us_combined_plots_parms_gui.cpp
M programs/us_ddist_combine/us_ddist_combine.cpp
Log Message:
-----------
[remove x_min/max from global settings]GMP 6. REPORT -- for runs based on Custom-Grid model, use correct ranges for ind. and combined distributions...
Commit: 1e81209448574c4a6b3bf57955a2aed48a70cca2
https://github.com/ehb54/ultrascan3/commit/1e81209448574c4a6b3bf57955a2aed48a70cca2
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-11-20 (Thu, 20 Nov 2025)
Changed paths:
M CMakeLists.txt
M gui/libus_gui.pro
A gui/us_convert_gui.cpp
A gui/us_convert_gui.h
A gui/us_experiment_gui.cpp
A gui/us_experiment_gui.h
A gui/us_get_run.cpp
A gui/us_get_run.h
A gui/us_intensity.cpp
A gui/us_intensity.h
A gui/us_select_triples.cpp
A gui/us_select_triples.h
A gui/us_selectbox.cpp
A gui/us_selectbox.h
M programs/us_autoflow_analysis/CMakeLists.txt
M programs/us_autoflow_analysis/us_autoflow_analysis.h
M programs/us_autoflow_analysis/us_autoflow_analysis.pro
M programs/us_com_project/CMakeLists.txt
M programs/us_com_project/us_com_project.pro
M programs/us_com_project/us_com_project_gui.h
M programs/us_com_project_academic/CMakeLists.txt
M programs/us_com_project_academic/us_com_project_academic.pro
M programs/us_convert/CMakeLists.txt
R programs/us_convert/us_convert.cpp
R programs/us_convert/us_convert.h
M programs/us_convert/us_convert.pro
R programs/us_convert/us_convert_gui.cpp
R programs/us_convert/us_convert_gui.h
R programs/us_convert/us_convertio.cpp
R programs/us_convert/us_convertio.h
R programs/us_convert/us_experiment.cpp
R programs/us_convert/us_experiment.h
R programs/us_convert/us_experiment_gui.cpp
R programs/us_convert/us_experiment_gui.h
R programs/us_convert/us_get_run.cpp
R programs/us_convert/us_get_run.h
R programs/us_convert/us_intensity.cpp
R programs/us_convert/us_intensity.h
R programs/us_convert/us_select_triples.cpp
R programs/us_convert/us_select_triples.h
R programs/us_convert/us_selectbox.cpp
R programs/us_convert/us_selectbox.h
M programs/us_experiment/CMakeLists.txt
M programs/us_experiment/us_experiment.pro
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_fematch/CMakeLists.txt
M programs/us_fematch/us_fematch.pro
M programs/us_fit_meniscus/CMakeLists.txt
M programs/us_legacy_converter/CMakeLists.txt
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
M programs/us_legacy_converter/us_legacy_converter.pro
M programs/us_protocol_dev/CMakeLists.txt
M programs/us_protocol_dev/us_protocol_dev.pro
M programs/us_protocol_dev/us_protocol_dev_gui.h
M programs/us_query_rmsd/CMakeLists.txt
M programs/us_query_rmsd/us_query_rmsd.pro
M programs/us_reporter_gmp/CMakeLists.txt
M programs/us_reporter_gmp/us_reporter_gmp.pro
M programs/us_xpn_viewer/us_xpn_viewer.pro
M test-docker.sh
M utils/CMakeLists.txt
M utils/libus_utils.pro
A utils/us_convert.cpp
A utils/us_convert.h
A utils/us_convertio.cpp
A utils/us_convertio.h
A utils/us_experiment.cpp
A utils/us_experiment.h
Log Message:
-----------
Merge pull request #323 from ehb54/lukas/cmake-fixes
Fix failing Unittests and cmake build
Commit: 9317a33dcf14a74c7ca9e145158c539dc3c10be3
https://github.com/ehb54/ultrascan3/commit/9317a33dcf14a74c7ca9e145158c539dc3c10be3
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-20 (Thu, 20 Nov 2025)
Changed paths:
M CMakeLists.txt
M gui/libus_gui.pro
A gui/us_convert_gui.cpp
A gui/us_convert_gui.h
A gui/us_experiment_gui.cpp
A gui/us_experiment_gui.h
A gui/us_get_run.cpp
A gui/us_get_run.h
A gui/us_intensity.cpp
A gui/us_intensity.h
A gui/us_select_triples.cpp
A gui/us_select_triples.h
A gui/us_selectbox.cpp
A gui/us_selectbox.h
M programs/us_autoflow_analysis/CMakeLists.txt
M programs/us_autoflow_analysis/us_autoflow_analysis.h
M programs/us_autoflow_analysis/us_autoflow_analysis.pro
M programs/us_com_project/CMakeLists.txt
M programs/us_com_project/us_com_project.pro
M programs/us_com_project/us_com_project_gui.h
M programs/us_com_project_academic/CMakeLists.txt
M programs/us_com_project_academic/us_com_project_academic.pro
M programs/us_convert/CMakeLists.txt
R programs/us_convert/us_convert.cpp
R programs/us_convert/us_convert.h
M programs/us_convert/us_convert.pro
R programs/us_convert/us_convert_gui.cpp
R programs/us_convert/us_convert_gui.h
R programs/us_convert/us_convertio.cpp
R programs/us_convert/us_convertio.h
R programs/us_convert/us_experiment.cpp
R programs/us_convert/us_experiment.h
R programs/us_convert/us_experiment_gui.cpp
R programs/us_convert/us_experiment_gui.h
R programs/us_convert/us_get_run.cpp
R programs/us_convert/us_get_run.h
R programs/us_convert/us_intensity.cpp
R programs/us_convert/us_intensity.h
R programs/us_convert/us_select_triples.cpp
R programs/us_convert/us_select_triples.h
R programs/us_convert/us_selectbox.cpp
R programs/us_convert/us_selectbox.h
M programs/us_edit/us_edit.cpp
M programs/us_experiment/CMakeLists.txt
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment.pro
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_fematch/CMakeLists.txt
M programs/us_fematch/us_fematch.pro
M programs/us_fit_meniscus/CMakeLists.txt
M programs/us_legacy_converter/CMakeLists.txt
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
M programs/us_legacy_converter/us_legacy_converter.pro
M programs/us_protocol_dev/CMakeLists.txt
M programs/us_protocol_dev/us_protocol_dev.pro
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
M programs/us_query_rmsd/CMakeLists.txt
M programs/us_query_rmsd/us_query_rmsd.pro
M programs/us_reporter_gmp/CMakeLists.txt
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.pro
M programs/us_xpn_viewer/us_xpn_viewer.pro
M test-docker.sh
M utils/CMakeLists.txt
M utils/libus_utils.pro
A utils/us_convert.cpp
A utils/us_convert.h
A utils/us_convertio.cpp
A utils/us_convertio.h
A utils/us_experiment.cpp
A utils/us_experiment.h
Log Message:
-----------
Merge pull request #325 from ehb54/main
Include main into alexey-dev-issue651
Commit: 02ab6c663335530dbf4295161c2f68c1043b3874
https://github.com/ehb54/ultrascan3/commit/02ab6c663335530dbf4295161c2f68c1043b3874
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M CMakeLists.txt
M gui/libus_gui.pro
A gui/us_convert_gui.cpp
A gui/us_convert_gui.h
A gui/us_experiment_gui.cpp
A gui/us_experiment_gui.h
A gui/us_get_run.cpp
A gui/us_get_run.h
A gui/us_intensity.cpp
A gui/us_intensity.h
A gui/us_select_triples.cpp
A gui/us_select_triples.h
A gui/us_selectbox.cpp
A gui/us_selectbox.h
M programs/us_autoflow_analysis/CMakeLists.txt
M programs/us_autoflow_analysis/us_autoflow_analysis.h
M programs/us_autoflow_analysis/us_autoflow_analysis.pro
M programs/us_com_project/CMakeLists.txt
M programs/us_com_project/us_com_project.pro
M programs/us_com_project/us_com_project_gui.h
M programs/us_com_project_academic/CMakeLists.txt
M programs/us_com_project_academic/us_com_project_academic.pro
M programs/us_convert/CMakeLists.txt
R programs/us_convert/us_convert.cpp
R programs/us_convert/us_convert.h
M programs/us_convert/us_convert.pro
R programs/us_convert/us_convert_gui.cpp
R programs/us_convert/us_convert_gui.h
R programs/us_convert/us_convertio.cpp
R programs/us_convert/us_convertio.h
R programs/us_convert/us_experiment.cpp
R programs/us_convert/us_experiment.h
R programs/us_convert/us_experiment_gui.cpp
R programs/us_convert/us_experiment_gui.h
R programs/us_convert/us_get_run.cpp
R programs/us_convert/us_get_run.h
R programs/us_convert/us_intensity.cpp
R programs/us_convert/us_intensity.h
R programs/us_convert/us_select_triples.cpp
R programs/us_convert/us_select_triples.h
R programs/us_convert/us_selectbox.cpp
R programs/us_convert/us_selectbox.h
M programs/us_edit/us_edit.cpp
M programs/us_experiment/CMakeLists.txt
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment.pro
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_fematch/CMakeLists.txt
M programs/us_fematch/us_fematch.pro
M programs/us_fit_meniscus/CMakeLists.txt
M programs/us_legacy_converter/CMakeLists.txt
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
M programs/us_legacy_converter/us_legacy_converter.pro
M programs/us_protocol_dev/CMakeLists.txt
M programs/us_protocol_dev/us_protocol_dev.pro
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
M programs/us_query_rmsd/CMakeLists.txt
M programs/us_query_rmsd/us_query_rmsd.pro
M programs/us_reporter_gmp/CMakeLists.txt
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.pro
M programs/us_xpn_viewer/us_xpn_viewer.pro
M test-docker.sh
M utils/CMakeLists.txt
M utils/libus_utils.pro
A utils/us_convert.cpp
A utils/us_convert.h
A utils/us_convertio.cpp
A utils/us_convertio.h
A utils/us_experiment.cpp
A utils/us_experiment.h
Log Message:
-----------
Merge branch 'main' into lukas/gh_actions
Commit: 013afa9051723a54ff17a3431895f0e6aa65eebc
https://github.com/ehb54/ultrascan3/commit/013afa9051723a54ff17a3431895f0e6aa65eebc
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
M .github/workflows/doc-build.yml
M .github/workflows/static-analysis.yml
Log Message:
-----------
Refactor GitHub Actions workflows to enhance modularity and efficiency
- Introduce `changed-files` job to conditionally trigger workflows based on file changes.
- Add status-checking jobs for Documentation, CodeQL analysis, and Static Analysis builds.
- Improve concurrency management and file fetch depth.
- Optimize CI Docker containers and cleanup processes.
- Streamline conditional checks and matrix configurations.
Commit: 2574c202cf8e3a25d12efaf4dd85cbfcf4cce419
https://github.com/ehb54/ultrascan3/commit/2574c202cf8e3a25d12efaf4dd85cbfcf4cce419
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
A .github/workflows/unit-tests-v2.yml
Log Message:
-----------
Add `unit-tests-v2.yml` GitHub Actions workflow
- Introduce a new workflow for unit testing with support for configurable test filters and debug mode.
- Add a `changed-files` job to detect relevant file modifications and conditionally trigger tests.
- Implement improved concurrency management and result-checking mechanisms.
- Streamline test setup, build process, and log management for enhanced clarity and efficiency.
- Enable artifact uploads for detailed test results and logs.
Commit: e2a9b2acaeeeac868cf1d55f459225e683e37d11
https://github.com/ehb54/ultrascan3/commit/e2a9b2acaeeeac868cf1d55f459225e683e37d11
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M .github/workflows/static-analysis.yml
M .github/workflows/unit-tests-v2.yml
Log Message:
-----------
Normalize glob patterns in GitHub Actions workflows
Commit: 037064b1d8968578fcb9a42ba07e275c96b38a8c
https://github.com/ehb54/ultrascan3/commit/037064b1d8968578fcb9a42ba07e275c96b38a8c
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M .github/workflows/unit-tests-v2.yml
Log Message:
-----------
Fix incorrect `CMAKE_MODULE_PATH` to use absolute path in `unit-tests-v2.yml` workflow
Commit: 4c0538dff646603c4258628a076f9807a29af7c3
https://github.com/ehb54/ultrascan3/commit/4c0538dff646603c4258628a076f9807a29af7c3
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M .github/workflows/unit-tests.yml
Log Message:
-----------
Enhance `unit-tests.yml` workflow with dynamic file change detection and improved concurrency management
- Add `changed-files` job to detect relevant modifications and conditionally trigger unit tests.
- Introduce concurrency control to prevent duplicate runs.
- Expand artifacts to include additional logs for better debugging.
- Add status-checking job to validate unit testing outcomes.
- Refactor workflow for clarity and streamlined test execution.
Commit: 12e9e1fd701da2b201e7d47b3cb642812813e4e7
https://github.com/ehb54/ultrascan3/commit/12e9e1fd701da2b201e7d47b3cb642812813e4e7
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
Enhance `static-analysis.yml` workflow with CPP file-specific change detection
- Add outputs and environment variables to track `.cpp` and `.h` file changes.
- Update `changed-files` step to simplify logic and rely on filtered outputs.
- Streamline file detection for first commits and pull requests.
Commit: e94063c15730a822262820f18c468a429ac4c374
https://github.com/ehb54/ultrascan3/commit/e94063c15730a822262820f18c468a429ac4c374
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M .github/workflows/unit-tests.yml
Log Message:
-----------
Normalize glob pattern syntax in `unit-tests.yml` workflow
Commit: 158b855316998f18924177b91ad5cb81e696ad53
https://github.com/ehb54/ultrascan3/commit/158b855316998f18924177b91ad5cb81e696ad53
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
Update static-analysis workflow to use latest `us3comp` container image
Commit: e90b563926591d47a67070f0413d64f995ed47a0
https://github.com/ehb54/ultrascan3/commit/e90b563926591d47a67070f0413d64f995ed47a0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
Log Message:
-----------
GMP 6. REPORT -- [single-point data] add debug stats...
Commit: fe4173f931d8dff6fa90b5ac68584d7288da6e44
https://github.com/ehb54/ultrascan3/commit/fe4173f931d8dff6fa90b5ac68584d7288da6e44
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
Log Message:
-----------
[1]GMP 6. REPORT -- [single-point data] add debug stats...
Commit: dc717ab5d9685a48525ee315d3f4bffe9dec806e
https://github.com/ehb54/ultrascan3/commit/dc717ab5d9685a48525ee315d3f4bffe9dec806e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
Log Message:
-----------
[2]GMP 6. REPORT -- [single-point data] add debug stats...
Commit: f27c85345e2838e5372ad69873016bc574f4b005
https://github.com/ehb54/ultrascan3/commit/f27c85345e2838e5372ad69873016bc574f4b005
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
Log Message:
-----------
[3]GMP 6. REPORT -- [single-point data] add debug stats...
Commit: 48cb1fa84db559ebdc58a2b9c4b7e7c00ff9cb5b
https://github.com/ehb54/ultrascan3/commit/48cb1fa84db559ebdc58a2b9c4b7e7c00ff9cb5b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
Log Message:
-----------
[4]GMP 6. REPORT -- [single-point data] add debug stats...
Commit: 74a2a0309cbf2e06fe514e02ea2cc40874cf4f25
https://github.com/ehb54/ultrascan3/commit/74a2a0309cbf2e06fe514e02ea2cc40874cf4f25
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
Log Message:
-----------
PROT_DEV: run_selector -- order in reverse chronological order...
Commit: 350edcd3194656d020a571d45cbe1dd872d041e2
https://github.com/ehb54/ultrascan3/commit/350edcd3194656d020a571d45cbe1dd872d041e2
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M gui/us_combined_plots_parms_gui.cpp
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_ddist_combine.h
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
Merge pull request #322 from ehb54/alexey-dev-issue651
Alexey dev issue651: Ind. & Combined Plots in GMP Rpeorts: CG-model-based runs (ranges), Plot Aspect Ratios, "Combined Plots" section title
Commit: 05f602b3975c9e9cfbbeb21813b637046978d65a
https://github.com/ehb54/ultrascan3/commit/05f602b3975c9e9cfbbeb21813b637046978d65a
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-21 (Fri, 21 Nov 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP 6. REPORT -- generate correct build number in the header...
Commit: e1ce700f61527eedba262f237e41dbcc16de6de7
https://github.com/ehb54/ultrascan3/commit/e1ce700f61527eedba262f237e41dbcc16de6de7
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-22 (Sat, 22 Nov 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
Update file patterns for static analysis
Commit: aebbdda924bca0630a6b1b50f5110f340c8804aa
https://github.com/ehb54/ultrascan3/commit/aebbdda924bca0630a6b1b50f5110f340c8804aa
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-22 (Sat, 22 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Update CodeQL workflow to ignore specific files
Ignore changes in us_mpi_analysis directory during file checks and update build commands.
Commit: a4a655d619279b7bb59e01ee82fce46e875eebca
https://github.com/ehb54/ultrascan3/commit/a4a655d619279b7bb59e01ee82fce46e875eebca
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-22 (Sat, 22 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Exclude us_mpi_analysis from CodeQL analysis gui
Commit: 14ba4d63b16861ed659ae0c204b0ee3f54589432
https://github.com/ehb54/ultrascan3/commit/14ba4d63b16861ed659ae0c204b0ee3f54589432
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-11-22 (Sat, 22 Nov 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Fix syntax for exclusion in CodeQL workflow
Commit: 770769aa570aae22f64b5b817de2320ab1b070e3
https://github.com/ehb54/ultrascan3/commit/770769aa570aae22f64b5b817de2320ab1b070e3
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-11-22 (Sat, 22 Nov 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
Merge pull request #326 from ehb54/alexey-dev-issue631
GMP 6. REPORT -- generate correct build number in the header...
Commit: 3f56d29bde0ad6a71c607a8bcfb56bc7caca4961
https://github.com/ehb54/ultrascan3/commit/3f56d29bde0ad6a71c607a8bcfb56bc7caca4961
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-11-24 (Mon, 24 Nov 2025)
Changed paths:
M gui/us_combined_plots_parms_gui.cpp
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_ddist_combine.h
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
Merge branch 'main' into lukas/gh_actions
Commit: c088a80976663c552cffec04fcb0cfe084922560
https://github.com/ehb54/ultrascan3/commit/c088a80976663c552cffec04fcb0cfe084922560
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-11-24 (Mon, 24 Nov 2025)
Changed paths:
R .github/workflows/.yamllint.yml
M .github/workflows/codeql-analysis.yml
M .github/workflows/doc-build.yml
M .github/workflows/static-analysis.yml
A .github/workflows/unit-tests-v2.yml
M .github/workflows/unit-tests.yml
A admin/linting/cmake/.cmake-format.yaml
A admin/linting/cmake/README.md
A admin/linting/yaml/.yamllint.yml
Log Message:
-----------
Merge pull request #321 from ehb54/lukas/gh_actions
Lukas/gh actions
Commit: 70cf969d22c8ecb1892bcb7a3301d101bca7aa55
https://github.com/ehb54/ultrascan3/commit/70cf969d22c8ecb1892bcb7a3301d101bca7aa55
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-11-24 (Mon, 24 Nov 2025)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
Log Message:
-----------
GMP 5. ANALYSIS -- added more processEvens() for progressDialogs in (1) FITMEN_AUTO stage, and (2) View Overlay while simulating data -- may have caused stoppage in updating main GUI after completion of these stages...
Commit: 815465ed2b2679fbcf4cda7c076dda6fdc89f322
https://github.com/ehb54/ultrascan3/commit/815465ed2b2679fbcf4cda7c076dda6fdc89f322
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-11-24 (Mon, 24 Nov 2025)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
Log Message:
-----------
Merge pull request #327 from ehb54/alexey-dev-issue657
GMP 5. ANALYSIS -- added more processEvens() for progressDialogs in FITME_AUTO & View Overlay
Commit: 609897d0591d9d8d0b5bf0bbb55478c8efd20337
https://github.com/ehb54/ultrascan3/commit/609897d0591d9d8d0b5bf0bbb55478c8efd20337
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-12-01 (Mon, 01 Dec 2025)
Changed paths:
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
Log Message:
-----------
PROT.DEV. dataDisk re-use -- filter out older completed dataDisk GMP runs for re-processing...
Commit: fe940ce7749c9043b38aa0f91efa79a19fed6216
https://github.com/ehb54/ultrascan3/commit/fe940ce7749c9043b38aa0f91efa79a19fed6216
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-12-01 (Mon, 01 Dec 2025)
Changed paths:
M utils/us_experiment.cpp
Log Message:
-----------
[debug 1]GMP 5. ANALYSIS -- added more processEvens() for progressDialogs in (1) FITMEN_AUTO stage, and (2) View Overlay while simulating data -- may have caused stoppage in updating main GUI after completion of these stages...
Commit: 3322930798adf89544c8645263c9a5b2b477124a
https://github.com/ehb54/ultrascan3/commit/3322930798adf89544c8645263c9a5b2b477124a
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-12-01 (Mon, 01 Dec 2025)
Changed paths:
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M utils/us_experiment.cpp
Log Message:
-----------
Merge pull request #330 from ehb54/alexey-dev-issue667
PROT DEV -- filter out completed dataDisk runs initiated with earlier tabular signature (not to be reprocessed)
Commit: af82fdc5c2ed2e8bf13ae52c9996e28545c1a9fa
https://github.com/ehb54/ultrascan3/commit/af82fdc5c2ed2e8bf13ae52c9996e28545c1a9fa
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-12-01 (Mon, 01 Dec 2025)
Changed paths:
M gui/us_convert_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M utils/us_convertio.cpp
M utils/us_convertio.h
M utils/us_experiment.cpp
M utils/us_experiment.h
Log Message:
-----------
PROT.DEV.: dataDisk type -- pass invID from the protocol assoc. with the datat to-be-reanalysed for download from DB: (1) during creation of a new run using data produced by different owner; (2) during re-attachment from different session/different user (which would require fresh download)...
Commit: 7d85624ca8988e36c4f8b7c31b1d647b049c5e20
https://github.com/ehb54/ultrascan3/commit/7d85624ca8988e36c4f8b7c31b1d647b049c5e20
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-12-03 (Wed, 03 Dec 2025)
Changed paths:
M gui/us_convert_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M utils/us_convertio.cpp
M utils/us_convertio.h
M utils/us_experiment.cpp
M utils/us_experiment.h
Log Message:
-----------
Merge pull request #331 from ehb54/alexey-dev-issue669
PROT.DEV.: dataDisk type -- pass correct invID (data owner)
Commit: c6506c7244d4b5a0983f0b4b904c963afb1424ff
https://github.com/ehb54/ultrascan3/commit/c6506c7244d4b5a0983f0b4b904c963afb1424ff
Author: Saeed <github.com/samo38>
Date: 2025-12-08 (Mon, 08 Dec 2025)
Changed paths:
M programs/us_ga_init/us_solutedata.cpp
Log Message:
-----------
calculate the confidence intervals based on accumulated concentration over sorted values
Commit: aff3811250880ef52f2b3e6568f97d43ae958654
https://github.com/ehb54/ultrascan3/commit/aff3811250880ef52f2b3e6568f97d43ae958654
Author: Saeed <github.com/samo38>
Date: 2025-12-08 (Mon, 08 Dec 2025)
Changed paths:
M programs/us_ga_init/us_solutedata.cpp
Log Message:
-----------
us_solutedata.cpp: Constructs the idxs vector with an initial size, replace stable_sort with sort std function
Commit: fac3bd3f8d097359906b91580ee196ef7eff219c
https://github.com/ehb54/ultrascan3/commit/fac3bd3f8d097359906b91580ee196ef7eff219c
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-12-09 (Tue, 09 Dec 2025)
Changed paths:
M programs/us_ga_init/us_solutedata.cpp
Log Message:
-----------
Merge pull request #332 from samo38/issue_672
issue 672: confidence interval problem
Commit: 2bbf479b2120feddeaee7fadcfbbb78e53d79378
https://github.com/ehb54/ultrascan3/commit/2bbf479b2120feddeaee7fadcfbbb78e53d79378
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-12-11 (Thu, 11 Dec 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
A .github/workflows/doc-build.yml
M .github/workflows/static-analysis.yml
A .github/workflows/unit-tests-v2.yml
M .github/workflows/unit-tests.yml
M .gitignore
A .gitmodules
M CMakeLists.txt
A CMakePresets.json
M README.md
A admin/cmake/GenerateVersion.cmake
A admin/cmake/Us3QrcCheck.cmake
A admin/cmake/Us3Resources.cmake
A admin/cmake/UsDefinesParser.cmake
A admin/cmake/platform-config.cmake
A admin/cmake/triplets/x64-osx-dynamic.cmake
R admin/cmake/us_version.h.in
M admin/codeql/docker/local.pri.gui
M admin/codeql/docker/local.pri.mpi
M admin/codeql/docker/local.pri.somo
A admin/linting/cmake/.cmake-format.yaml
A admin/linting/cmake/README.md
A admin/linting/yaml/.yamllint.yml
M admin/release/buildpkg.pl
M admin/release/centos7/Dockerfile
M admin/release/redhat/Dockerfile
M admin/release/ubuntu/Dockerfile
M admin/release/ubuntu_qt6/Dockerfile
M admin/test/docker/Dockerfile
M alpha/us.cpp
A buildsys/vcpkg/overlay-ports/qwt/portfile.cmake
A buildsys/vcpkg/overlay-ports/qwt/vcpkg.json
A buildsys/vcpkg/overlay-ports/qwtplot3d/portfile.cmake
A buildsys/vcpkg/overlay-ports/qwtplot3d/qwtplot3d-config.cmake.in
A buildsys/vcpkg/overlay-ports/qwtplot3d/vcpkg.json
A doc/manual/CMakeLists.txt
M doc/manual/advanced_config.body
M gui/CMakeLists.txt
M gui/libus_gui.pro
M gui/us_abstractrotor_gui.cpp
M gui/us_analysis_base2.cpp
M gui/us_analyte_gui.cpp
M gui/us_associations_gui.cpp
M gui/us_buffer_gui.cpp
M gui/us_choice.cpp
M gui/us_combined_plots_parms_gui.cpp
A gui/us_convert_gui.cpp
A gui/us_convert_gui.h
M gui/us_csv_loader.cpp
M gui/us_data_loader.cpp
M gui/us_edit_spectrum.cpp
M gui/us_editor.h
M gui/us_editor_gui.cpp
A gui/us_experiment_gui.cpp
A gui/us_experiment_gui.h
M gui/us_extinctfitter_gui.cpp
M gui/us_extinction_gui.cpp
M gui/us_failed_gmp_run_gui.cpp
A gui/us_get_run.cpp
A gui/us_get_run.h
M gui/us_gui_settings.cpp
M gui/us_gui_settings.h
M gui/us_gui_util.cpp
A gui/us_intensity.cpp
A gui/us_intensity.h
M gui/us_investigator.cpp
M gui/us_license.h
M gui/us_load_auc.cpp
M gui/us_loadable_noise.cpp
R gui/us_mac_utils.c
R gui/us_mac_utils.h
M gui/us_minimize.cpp
M gui/us_model_gui.cpp
M gui/us_model_loader.cpp
M gui/us_new_spectrum.cpp
M gui/us_noise_loader.cpp
M gui/us_passwd.cpp
M gui/us_passwd.h
M gui/us_plot.cpp
M gui/us_plot.h
M gui/us_plot3d.cpp
M gui/us_predict1.cpp
M gui/us_project_gui.cpp
M gui/us_properties.cpp
M gui/us_report_general_gui.cpp
M gui/us_report_gui.cpp
M gui/us_resids_bitmap.cpp
M gui/us_rotor_gui.cpp
M gui/us_run_details2.cpp
M gui/us_sassoc.cpp
M gui/us_sassoc.h
M gui/us_scan_excl_gui.cpp
M gui/us_select_edits.cpp
M gui/us_select_item.cpp
M gui/us_select_runs.cpp
A gui/us_select_triples.cpp
A gui/us_select_triples.h
A gui/us_selectbox.cpp
A gui/us_selectbox.h
M gui/us_sim_params_gui.cpp
M gui/us_solution_gui.cpp
M gui/us_spectrodata.cpp
M gui/us_spectrodata.h
M gui/us_table.cpp
M gui/us_table.h
M gui/us_tmst_plot.cpp
M gui/us_widgets.cpp
M gui/us_widgets.h
M gui/us_widgets_dialog.cpp
M gui/us_widgets_dialog.h
R gui/us_win_utils.c
R gui/us_win_utils.h
R gui/us_window_message.cpp
R gui/us_window_message.h
R gui/us_x11_utils.c
R gui/us_x11_utils.h
M programs/CMakeLists.txt
A programs/us/CMakeLists.txt
M programs/us/revision.sh
M programs/us/us.cpp
M programs/us/us.h
M programs/us/us.pro
M programs/us/us_win_data.cpp
A programs/us/us_win_data.h
A programs/us_2dplot/CMakeLists.txt
M programs/us_2dplot/us_2dplot.cpp
M programs/us_2dplot/us_2dplot.h
A programs/us_2dsa/CMakeLists.txt
M programs/us_2dsa/us_2dsa.cpp
M programs/us_2dsa/us_2dsa_process.cpp
M programs/us_2dsa/us_2dsa_process.h
M programs/us_2dsa/us_adv_analysis_2d.cpp
M programs/us_2dsa/us_analysis_control_2d.cpp
M programs/us_2dsa/us_plot_control_2d.cpp
M programs/us_2dsa/us_resplot_2d.cpp
M programs/us_2dsa/us_show_norm.cpp
A programs/us_abde/CMakeLists.txt
M programs/us_abde/us_norm_profile.cpp
A programs/us_analysis_profile/CMakeLists.txt
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_anapro_utils.cpp
A programs/us_analyte/CMakeLists.txt
A programs/us_assign_reviewers_gmp/CMakeLists.txt
A programs/us_astfem_sim/CMakeLists.txt
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_astfem_sim/us_astfem_sim.h
M programs/us_astfem_sim/us_clipdata.cpp
M programs/us_astfem_sim/us_clipdata.h
A programs/us_audit_trail_gmp/CMakeLists.txt
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_autoflow_analysis/CMakeLists.txt
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.h
M programs/us_autoflow_analysis/us_autoflow_analysis.pro
A programs/us_buffer/CMakeLists.txt
A programs/us_buoyancy/CMakeLists.txt
M programs/us_buoyancy/us_buoyancy.cpp
A programs/us_colorgradient/CMakeLists.txt
M programs/us_colorgradient/us_colorgradient.cpp
M programs/us_colorgradient/us_colorgradient.h
M programs/us_com_project/CMakeLists.txt
M programs/us_com_project/us_com_project.pro
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_com_project_academic/CMakeLists.txt
M programs/us_com_project_academic/us_com_project_academic.pro
A programs/us_combine_models/CMakeLists.txt
M programs/us_combine_models/us_combine_models.cpp
A programs/us_config/CMakeLists.txt
M programs/us_config/us_admin.h
M programs/us_config/us_advanced.h
M programs/us_config/us_color.cpp
M programs/us_config/us_color.h
M programs/us_config/us_config.cpp
M programs/us_config/us_config.h
M programs/us_config/us_font.h
M programs/us_config/us_xpnhost.h
M programs/us_config/us_xpnhost_db.h
A programs/us_convert/CMakeLists.txt
R programs/us_convert/us_convert.cpp
R programs/us_convert/us_convert.h
M programs/us_convert/us_convert.pro
R programs/us_convert/us_convert_gui.cpp
R programs/us_convert/us_convert_gui.h
R programs/us_convert/us_convertio.cpp
R programs/us_convert/us_convertio.h
R programs/us_convert/us_experiment.cpp
R programs/us_convert/us_experiment.h
R programs/us_convert/us_experiment_gui.cpp
R programs/us_convert/us_experiment_gui.h
R programs/us_convert/us_get_run.cpp
R programs/us_convert/us_get_run.h
R programs/us_convert/us_intensity.cpp
R programs/us_convert/us_intensity.h
R programs/us_convert/us_select_triples.cpp
R programs/us_convert/us_select_triples.h
R programs/us_convert/us_selectbox.cpp
R programs/us_convert/us_selectbox.h
A programs/us_dcdt/CMakeLists.txt
M programs/us_dcdt/us_dcdt.cpp
A programs/us_ddist_combine/CMakeLists.txt
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_ddist_combine.h
M programs/us_ddist_combine/us_select_rundd.cpp
A programs/us_density_match/CMakeLists.txt
M programs/us_density_match/us_density_match.cpp
M programs/us_density_match/us_model_params.cpp
M programs/us_density_match/us_remove_models.cpp
A programs/us_dmga_init/CMakeLists.txt
M programs/us_dmga_init/us_constraints_edit.cpp
M programs/us_dmga_init/us_dmga_init.cpp
A programs/us_edit/CMakeLists.txt
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit_scan.cpp
M programs/us_edit/us_exclude_profile.cpp
M programs/us_edit/us_get_edit.cpp
M programs/us_edit/us_ri_noise.cpp
M programs/us_edit/us_select_lambdas.cpp
A programs/us_equiltime/CMakeLists.txt
M programs/us_equiltime/us_equiltime.cpp
A programs/us_esigner_gmp/CMakeLists.txt
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_experiment/CMakeLists.txt
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment.pro
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_experiment/us_proto_ranges.cpp
A programs/us_export_legacy/CMakeLists.txt
M programs/us_export_legacy/us_export.cpp
A programs/us_extinction/CMakeLists.txt
A programs/us_fds_filemanager/CMakeLists.txt
M programs/us_fds_filemanager/us_fds_filemanager.cpp
M programs/us_fematch/CMakeLists.txt
M programs/us_fematch/us_adv_dmgamc.cpp
M programs/us_fematch/us_advanced_fem.cpp
M programs/us_fematch/us_dmga_mc_stats.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_fematch/us_fematch.pro
M programs/us_fematch/us_plot_control_fem.cpp
M programs/us_fematch/us_resplot_fem.cpp
M programs/us_fit_meniscus/CMakeLists.txt
M programs/us_fit_meniscus/us_fit_meniscus.cpp
A programs/us_ga_init/CMakeLists.txt
M programs/us_ga_init/us_ga_init.cpp
M programs/us_ga_init/us_solutedata.cpp
M programs/us_ga_init/us_solutedata.h
A programs/us_globalequil/CMakeLists.txt
M programs/us_globalequil/us_eqfit_control.cpp
M programs/us_globalequil/us_eqhistogram.cpp
M programs/us_globalequil/us_eqhistogram.h
M programs/us_globalequil/us_eqmodel_control.cpp
M programs/us_globalequil/us_eqreporter.cpp
M programs/us_globalequil/us_globalequil.cpp
M programs/us_globalequil/us_long_messagebox.cpp
M programs/us_globalequil/us_long_messagebox.h
M programs/us_globalequil/us_model_adpars.cpp
M programs/us_globalequil/us_model_select.cpp
A programs/us_grid_editor/CMakeLists.txt
A programs/us_helpdaemon/CMakeLists.txt
M programs/us_helpdaemon/us_helpdaemon.cpp
A programs/us_integral/CMakeLists.txt
M programs/us_integral/us_delete_models.cpp
M programs/us_integral/us_integral.cpp
A programs/us_investigator/CMakeLists.txt
A programs/us_legacy_converter/CMakeLists.txt
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
M programs/us_legacy_converter/us_legacy_converter.pro
A programs/us_license/CMakeLists.txt
A programs/us_manage_data/CMakeLists.txt
M programs/us_manage_data/us_data_model.cpp
M programs/us_manage_data/us_data_tree.cpp
M programs/us_manage_data/us_manage_data.cpp
A programs/us_model_gui/CMakeLists.txt
A programs/us_modelmetrics/CMakeLists.txt
M programs/us_modelmetrics/us_modelmetrics.cpp
M programs/us_mpi_analysis/2dsa_master.cpp
A programs/us_mpi_analysis/CMakeLists.txt
M programs/us_mpi_analysis/dmga_master.cpp
M programs/us_mpi_analysis/dmga_worker.cpp
M programs/us_mpi_analysis/ga_master.cpp
M programs/us_mpi_analysis/ga_worker.cpp
M programs/us_mpi_analysis/parallel_masters.cpp
M programs/us_mpi_analysis/pcsa_master.cpp
M programs/us_mpi_analysis/pmasters_compjob.cpp
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_mpi_analysis/us_mpi_parse.cpp
M programs/us_mwl_species_fit/CMakeLists.txt
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.h
A programs/us_mwl_species_sim/CMakeLists.txt
M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
A programs/us_mwl_spectra/CMakeLists.txt
M programs/us_mwl_spectra/us_mwl_spectra.cpp
M programs/us_mwl_spectra/us_mwls_pltctl.cpp
A programs/us_mwlr_viewer/CMakeLists.txt
M programs/us_mwlr_viewer/us_mwl_pltctrl.cpp
M programs/us_mwlr_viewer/us_mwl_run.cpp
M programs/us_mwlr_viewer/us_mwlr_viewer.cpp
A programs/us_pcsa/CMakeLists.txt
M programs/us_pcsa/us_adv_analysis_pc.cpp
M programs/us_pcsa/us_analysis_control_pc.cpp
M programs/us_pcsa/us_mlplot.cpp
M programs/us_pcsa/us_mrecs_loader.cpp
M programs/us_pcsa/us_pcsa.cpp
M programs/us_pcsa/us_pcsa_process.cpp
M programs/us_pcsa/us_pcsa_process.h
M programs/us_pcsa/us_plot_control_pc.cpp
M programs/us_pcsa/us_resplot_pc.cpp
M programs/us_pcsa/us_rpscan.cpp
A programs/us_predict1/CMakeLists.txt
A programs/us_predict2/CMakeLists.txt
A programs/us_project/CMakeLists.txt
M programs/us_protocol_dev/CMakeLists.txt
M programs/us_protocol_dev/us_protocol_dev.pro
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
A programs/us_pseudo3d_combine/CMakeLists.txt
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
M programs/us_pseudo3d_combine/us_remove_distros.cpp
A programs/us_pseudo_absorbance/CMakeLists.txt
M programs/us_pseudo_absorbance/us_add_refScan.cpp
M programs/us_query_rmsd/CMakeLists.txt
M programs/us_query_rmsd/us_query_rmsd.pro
A programs/us_ramp/CMakeLists.txt
M programs/us_ramp/us_experiment_gui_ra.cpp
M programs/us_ramp/us_get_dbrun_ra.cpp
M programs/us_ramp/us_intensity_ra.cpp
M programs/us_ramp/us_ramp_gui.cpp
M programs/us_ramp/us_select_triples_ra.cpp
R programs/us_rasmol_control/us_rasmol_control.cpp
R programs/us_rasmol_control/us_rasmol_control.h
R programs/us_rasmol_control/us_rasmol_control.pro
A programs/us_reassign_reviewers_gmp/CMakeLists.txt
A programs/us_reporter/CMakeLists.txt
M programs/us_reporter/us_reporter.cpp
M programs/us_reporter/us_sync_db.cpp
M programs/us_reporter_gmp/CMakeLists.txt
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_reporter_gmp/us_reporter_gmp.pro
A programs/us_rotor/CMakeLists.txt
A programs/us_rotor_calibration/CMakeLists.txt
M programs/us_rotor_calibration/us_get_dbexp.cpp
M programs/us_rotor_calibration/us_rotor_calibration.cpp
A programs/us_sassoc/CMakeLists.txt
A programs/us_second_moment/CMakeLists.txt
M programs/us_second_moment/us_second_moment.cpp
A programs/us_solution/CMakeLists.txt
A programs/us_spectrum/CMakeLists.txt
M programs/us_spectrum/us_spectrum.cpp
A programs/us_tmst_viewer/CMakeLists.txt
A programs/us_vhw_combine/CMakeLists.txt
M programs/us_vhw_combine/us_select_runid.cpp
M programs/us_vhw_combine/us_vhw_combine.cpp
M programs/us_vhw_combine/us_vhwc_pltctl.cpp
A programs/us_vhw_enhanced/CMakeLists.txt
M programs/us_vhw_enhanced/us_distrib_plot.cpp
M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
A programs/us_xpn_viewer/CMakeLists.txt
M programs/us_xpn_viewer/us_xpn_run_auc.cpp
M programs/us_xpn_viewer/us_xpn_run_raw.cpp
M programs/us_xpn_viewer/us_xpn_viewer.pro
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M qwtplot3d/CMakeLists.txt
M qwtplot3d/include/qwt3d_openglhelper.h
M qwtplot3d/qwtplot3d.pro
M qwtplot3d/src/qwt3d_mousekeyboard.cpp
A scripts/build.sh
M test-docker.sh
M test/CMakeLists.txt
M test/modelbuilder/us_modelbuilder.cpp
M test/utils/CMakeLists.txt
M test/utils/test_us_ana_profile.cpp
M us_somo/develop/3dplot/lightingdlgbase.h
M us_somo/develop/src/qwt/scrollzoomer.cpp
M us_somo/develop/src/us_dirhist.cpp
M us_somo/develop/src/us_editor.cpp
M us_somo/develop/src/us_hydrodyn.cpp
M us_somo/develop/src/us_hydrodyn_batch.cpp
M us_somo/develop/src/us_hydrodyn_bd.cpp
M us_somo/develop/src/us_hydrodyn_comparative.cpp
M us_somo/develop/src/us_hydrodyn_saxs.cpp
M utils/CMakeLists.txt
M utils/libus_utils.pro
M utils/us_ana_profile.cpp
M utils/us_buffer.cpp
A utils/us_convert.cpp
A utils/us_convert.h
A utils/us_convertio.cpp
A utils/us_convertio.h
M utils/us_crypto.cpp
M utils/us_db2.cpp
M utils/us_defines.h
A utils/us_experiment.cpp
A utils/us_experiment.h
M utils/us_gzip.cpp
M utils/us_hardware.cpp
M utils/us_hydrosim.h
M utils/us_lamm_astfvm.cpp
M utils/us_license_t.cpp
M utils/us_link_ssl.cpp
M utils/us_math2.cpp
M utils/us_math2.h
M utils/us_matrix.cpp
M utils/us_pcsa_modelrec.cpp
M utils/us_project.cpp
M utils/us_run_protocol.cpp
M utils/us_run_protocol.h
M utils/us_simparms.cpp
M utils/us_simparms.h
M utils/us_solve_sim.cpp
M utils/us_tar.cpp
M utils/us_time_state.cpp
M utils/us_timer.cpp
M utils/us_timer.h
M utils/us_xpn_data.cpp
A vcpkg
A vcpkg-configuration.json
A vcpkg.json
Log Message:
-----------
Merge branch 'main' into lukas/us_xpn_viewer_timestate
Compare: https://github.com/ehb54/ultrascan3/compare/37fd8b74401f...2bbf479b2120
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