[us-commits] [ehb54/ultrascan3] fb85cb: Added CFF Citation file
aaron-auc
noreply at github.com
Tue Jul 1 20:17:18 MDT 2025
Branch: refs/heads/aaron-dev-test-utils
Home: https://github.com/ehb54/ultrascan3
Commit: fb85cbc41bfb5e7519c6b2889d75248e9a9667cd
https://github.com/ehb54/ultrascan3/commit/fb85cbc41bfb5e7519c6b2889d75248e9a9667cd
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2024-05-22 (Wed, 22 May 2024)
Changed paths:
A CITATION.cff
Log Message:
-----------
Added CFF Citation file
Addresses ticket #82 https://github.com/ehb54/ultrascan-tickets/issues/82
Commit: 70a4e52dc8c7fcf7424066e8e3cc224944cdf857
https://github.com/ehb54/ultrascan3/commit/70a4e52dc8c7fcf7424066e8e3cc224944cdf857
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-07-08 (Mon, 08 Jul 2024)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
Log Message:
-----------
us_edit: save radial points and intensity over wavelength of each cell separately. It solves the issue of non-matching radial points between cells
Commit: f12f7418e61e7a80db74b6dac3c31083e3577c2d
https://github.com/ehb54/ultrascan3/commit/f12f7418e61e7a80db74b6dac3c31083e3577c2d
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-07-09 (Tue, 09 Jul 2024)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
us_edit: Sort the absorbance over wavelength for each cell separately by comparing their radial positions to each other.
Commit: 8c167ed0ff04e4e3cdf70278134b1bb9d98104c1
https://github.com/ehb54/ultrascan3/commit/8c167ed0ff04e4e3cdf70278134b1bb9d98104c1
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-07-10 (Wed, 10 Jul 2024)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
Log Message:
-----------
us_edit: finished wiriting the set_data_over_lamda to sort radial absorbance over wavelenght for each cell
Commit: e4264fd74c711a0c06338131c0b1d5c755468e91
https://github.com/ehb54/ultrascan3/commit/e4264fd74c711a0c06338131c0b1d5c755468e91
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-07-11 (Thu, 11 Jul 2024)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
Log Message:
-----------
us_edit: add xaxis_wavl_wgts_on to turn off and on scan and lambda widget when user is looking at data over wavelength.
Commit: 186ada874872cf8f95e1bac9fad3a01c63173707
https://github.com/ehb54/ultrascan3/commit/186ada874872cf8f95e1bac9fad3a01c63173707
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-07-11 (Thu, 11 Jul 2024)
Changed paths:
M utils/us_datafiles.h
Log Message:
-----------
Merge remote-tracking branch 'upstream/master' into us_edit_issue
Commit: 9df106bba31ac55e74c314fcffd502e85bdffae2
https://github.com/ehb54/ultrascan3/commit/9df106bba31ac55e74c314fcffd502e85bdffae2
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-07-17 (Wed, 17 Jul 2024)
Changed paths:
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M programs/us_abde/us_norm_profile.cpp
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M programs/us_legacy_converter/us_legacy_converter.cpp
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Log Message:
-----------
Merge remote-tracking branch 'upstream/master' into us_edit_issue
Commit: 13a98f86d98bee60673cf08f105a3f9980a4f4d7
https://github.com/ehb54/ultrascan3/commit/13a98f86d98bee60673cf08f105a3f9980a4f4d7
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2024-08-20 (Tue, 20 Aug 2024)
Changed paths:
M gui/images.qrc
M gui/us_images.cpp
M gui/us_images.h
Log Message:
-----------
Add new table icon for csv export to US_Images
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 7903f54147a3423ef4e5f74d4db9fe81471e4332
https://github.com/ehb54/ultrascan3/commit/7903f54147a3423ef4e5f74d4db9fe81471e4332
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2024-08-20 (Tue, 20 Aug 2024)
Changed paths:
M gui/us_gui_util.cpp
M gui/us_gui_util.h
Log Message:
-----------
Add US_GuiUtil::save_csv
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 6faaa528e4dd023d57c6b3fa1289db1623e4d268
https://github.com/ehb54/ultrascan3/commit/6faaa528e4dd023d57c6b3fa1289db1623e4d268
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2024-08-20 (Tue, 20 Aug 2024)
Changed paths:
M gui/us_plot.cpp
M gui/us_plot.h
Log Message:
-----------
Add csv export option with icon to US_Plot
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: b7024fa38e87b1593e7c15151cefb16d627f5c9b
https://github.com/ehb54/ultrascan3/commit/b7024fa38e87b1593e7c15151cefb16d627f5c9b
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2024-08-20 (Tue, 20 Aug 2024)
Changed paths:
M gui/us_plot.cpp
Log Message:
-----------
Fix QToolButton Size and alignment
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 0233d851eae29bec29447b459623e598afa8c400
https://github.com/ehb54/ultrascan3/commit/0233d851eae29bec29447b459623e598afa8c400
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2024-08-20 (Tue, 20 Aug 2024)
Changed paths:
M gui/us_plot3d.cpp
Log Message:
-----------
Fix small bug in exporting 3D model plots to csv resulting in empty csv files
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 6ccabe63e3f4b43f06ce3f1d48673a99b7db37b8
https://github.com/ehb54/ultrascan3/commit/6ccabe63e3f4b43f06ce3f1d48673a99b7db37b8
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2024-08-20 (Tue, 20 Aug 2024)
Changed paths:
A gui/images/table.png
Log Message:
-----------
Add Table icon to images
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 3cb27cf418b268782420a897e52ef849dc1e3e0b
https://github.com/ehb54/ultrascan3/commit/3cb27cf418b268782420a897e52ef849dc1e3e0b
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2024-08-22 (Thu, 22 Aug 2024)
Changed paths:
M gui/us_gui_util.cpp
Log Message:
-----------
exclude empty curves from csv export
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: ccb2412745bffd920109204b23d73bfdfd8f1ef2
https://github.com/ehb54/ultrascan3/commit/ccb2412745bffd920109204b23d73bfdfd8f1ef2
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2024-09-02 (Mon, 02 Sep 2024)
Changed paths:
M utils/us_math2.h
Log Message:
-----------
Correct Doxygen for US_Math2::linefit
Commit: a5fbc1bea39535bce27a18c8bc158413134e9fbd
https://github.com/ehb54/ultrascan3/commit/a5fbc1bea39535bce27a18c8bc158413134e9fbd
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2024-09-02 (Mon, 02 Sep 2024)
Changed paths:
M gui/us_spectrodata.cpp
M gui/us_spectrodata.h
Log Message:
-----------
Add direct read out for US_SpectrogramData
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 8ed6165abbf335ee813296edf7c015a173b08f10
https://github.com/ehb54/ultrascan3/commit/8ed6165abbf335ee813296edf7c015a173b08f10
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2024-09-02 (Mon, 02 Sep 2024)
Changed paths:
M gui/us_gui_util.cpp
Log Message:
-----------
utilize US_SpectrogramData
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 6f210390f66849ba6badd69e34e102899c20db03
https://github.com/ehb54/ultrascan3/commit/6f210390f66849ba6badd69e34e102899c20db03
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2024-09-02 (Mon, 02 Sep 2024)
Changed paths:
M gui/images.qrc
A gui/images/table.png
M gui/us_gui_util.cpp
M gui/us_gui_util.h
M gui/us_images.cpp
M gui/us_images.h
M gui/us_plot.cpp
M gui/us_plot.h
M gui/us_plot3d.cpp
M gui/us_spectrodata.cpp
M gui/us_spectrodata.h
Log Message:
-----------
Merge pull request #128 from doluk/us_plot_csv
CSV export for plots
Commit: 3ea1da95226a0d00dc91e739d396057e21b4f50a
https://github.com/ehb54/ultrascan3/commit/3ea1da95226a0d00dc91e739d396057e21b4f50a
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2024-09-02 (Mon, 02 Sep 2024)
Changed paths:
M utils/us_math2.h
Log Message:
-----------
Merge pull request #131 from ehb54/us_math2linefit-doxygen
Correct Doxygen for US_Math2::linefit
Commit: b293d875a14575248e5c7804993aa3ad5f993d97
https://github.com/ehb54/ultrascan3/commit/b293d875a14575248e5c7804993aa3ad5f993d97
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-09-03 (Tue, 03 Sep 2024)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
Log Message:
-----------
Merge pull request #120 from samo38/us_edit_issue
Us edit issue
Commit: b4ac7ca85cba1908db228a83b5eb919bd45c3bbd
https://github.com/ehb54/ultrascan3/commit/b4ac7ca85cba1908db228a83b5eb919bd45c3bbd
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-09-06 (Fri, 06 Sep 2024)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP: REPORTING -- mods for ussue 357 on how to treat the report, gmp vs non-gmp for a number of scenarios...
Commit: 033486a9e2423d56f3826d51add92fb898001960
https://github.com/ehb54/ultrascan3/commit/033486a9e2423d56f3826d51add92fb898001960
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-09-10 (Tue, 10 Sep 2024)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
R&D : Labs/Rotor -- allow choosing operator...
Commit: 5448bc63397e8e12df29754ba4081aa37cc40cf2
https://github.com/ehb54/ultrascan3/commit/5448bc63397e8e12df29754ba4081aa37cc40cf2
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2024-09-13 (Fri, 13 Sep 2024)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
Merge pull request #133 from ehb54/alexey-dev-issue361
R&D : Labs/Rotor -- allow choosing operator...
Commit: 4d7c6043510db2cab1236a7b3ec099c81ee5cf10
https://github.com/ehb54/ultrascan3/commit/4d7c6043510db2cab1236a7b3ec099c81ee5cf10
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-09-25 (Wed, 25 Sep 2024)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
Log Message:
-----------
GMP : FAILED run reinitialization -- create a fresh 'status' record to capture submitter info to be passed to audit trail and report...
Commit: 41c6905a8304387c1f9b15a48f341c425396aa77
https://github.com/ehb54/ultrascan3/commit/41c6905a8304387c1f9b15a48f341c425396aa77
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-09-28 (Sat, 28 Sep 2024)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP, Reportign & e-Signing : fix for bad filenames for combined RI+IP runs preventing seeing downoaded report and eSigning ...
Commit: 56fdbf6053e67bda52277f1cb9bce674b6d8d1e6
https://github.com/ehb54/ultrascan3/commit/56fdbf6053e67bda52277f1cb9bce674b6d8d1e6
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-09-30 (Mon, 30 Sep 2024)
Changed paths:
M library.pri
M utils/libus_utils.pro
A utils/us_archive.cpp
A utils/us_archive.h
Log Message:
-----------
us_archive: initialized
Commit: 623b0045489c0bae59f093726ab11416d3fe4ef2
https://github.com/ehb54/ultrascan3/commit/623b0045489c0bae59f093726ab11416d3fe4ef2
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-09-30 (Mon, 30 Sep 2024)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
Log Message:
-----------
us_legacy_converter: use us_Archive to extarct zip files
Commit: e96479cbf67dca87212d684de97746f6a57cfd56
https://github.com/ehb54/ultrascan3/commit/e96479cbf67dca87212d684de97746f6a57cfd56
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-09-30 (Mon, 30 Sep 2024)
Changed paths:
M utils/us_archive.h
Log Message:
-----------
us_archive: add US_UTIL_EXTERN to the header file
Commit: 401e397df3bc4864ceea1eab9e818f8ac2848c2d
https://github.com/ehb54/ultrascan3/commit/401e397df3bc4864ceea1eab9e818f8ac2848c2d
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-09-30 (Mon, 30 Sep 2024)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
Log Message:
-----------
us_legacy_converter: clean the header file
Commit: ef65dbedbfa23c2adf450048d6e7d861911214b4
https://github.com/ehb54/ultrascan3/commit/ef65dbedbfa23c2adf450048d6e7d861911214b4
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-09-30 (Mon, 30 Sep 2024)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M utils/us_run_protocol.h
Log Message:
-----------
GMP : Data from local Disk -- initial work in 1. EXP. stage ...
Commit: 24499153a4dc7ca65d4be0e0edb9079b264dda69
https://github.com/ehb54/ultrascan3/commit/24499153a4dc7ca65d4be0e0edb9079b264dda69
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-10-01 (Tue, 01 Oct 2024)
Changed paths:
M utils/us_archive.cpp
M utils/us_archive.h
Log Message:
-----------
us_archive: add the compress function and merge the extract_entry and to extract function in a clear way
Commit: 46224926ea23cf785015c765e74df269d86294fc
https://github.com/ehb54/ultrascan3/commit/46224926ea23cf785015c765e74df269d86294fc
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-10-01 (Tue, 01 Oct 2024)
Changed paths:
M utils/us_archive.cpp
M utils/us_archive.h
Log Message:
-----------
us_archive: finished writing the static fucntions and theirs docs
Commit: ff068bb0eb5c502656fe05af1dd3f4741c26abfa
https://github.com/ehb54/ultrascan3/commit/ff068bb0eb5c502656fe05af1dd3f4741c26abfa
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-01 (Tue, 01 Oct 2024)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP : Data from local Disk -- more work on submission of the 'autoflow' run in 1. EXP. stage ...
Commit: 8be9a64d2e8a4ab5e43be0a07613119784dcaac9
https://github.com/ehb54/ultrascan3/commit/8be9a64d2e8a4ab5e43be0a07613119784dcaac9
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-10-02 (Wed, 02 Oct 2024)
Changed paths:
M utils/us_archive.cpp
M utils/us_archive.h
Log Message:
-----------
us_archive: change it from using static functions to object oriented.
Commit: 8927fa0a1dc220f2c2d8480ad28d48aea129b011
https://github.com/ehb54/ultrascan3/commit/8927fa0a1dc220f2c2d8480ad28d48aea129b011
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2024-10-02 (Wed, 02 Oct 2024)
Changed paths:
M gui/us_license.cpp
M gui/us_license.h
Log Message:
-----------
issue 358 - license updates
Commit: bf164315d184b46bf3cb9da2e949e97d5dab5ff0
https://github.com/ehb54/ultrascan3/commit/bf164315d184b46bf3cb9da2e949e97d5dab5ff0
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2024-10-02 (Wed, 02 Oct 2024)
Changed paths:
A .github/workflows/codeql-analysis.yml
A CMakeLists.txt
M LICENSE.txt
A README.md
A admin/codeql/docker/docker/Dockerfile
A admin/codeql/docker/dockerdev/Dockerfile
A admin/codeql/docker/local.pri.gui
A admin/codeql/docker/local.pri.mpi
A admin/codeql/docker/local.pri.somo
A admin/modulefiles/README.md
A admin/modulefiles/home-gui-build
A admin/release/README
A admin/release/buildpkg.pl
A admin/release/centos7/Dockerfile
A admin/release/linux.pl
A admin/release/redhat/Dockerfile
A admin/release/ubuntu/Dockerfile
A admin/release/ubuntu_qt6/Dockerfile
A admin/shm_ipc/main.cpp
A admin/shm_ipc/shm_ipc.pro
A admin/shm_open/main.cpp
A admin/shm_open/shm_open.pro
A admin/shm_open/shmnew.pro
M doc/manual/footer.us3
M doc/manual/images/us_edit.png
M doc/manual/images/us_edit_mwl.png
M etc/bufferComponents.xml
M etc/dmd/PRO_RNA_MOL.DMDParam
M etc/dmd/allatom.par
M etc/dmd/medutop.pro
M gui/images.qrc
A gui/images/table.png
M gui/libus_gui.pro
M gui/us_analyte_gui.cpp
M gui/us_associations_gui.cpp
M gui/us_associations_gui.h
M gui/us_buffer_gui.cpp
M gui/us_buffer_gui.h
M gui/us_choice.h
M gui/us_colorgradIO.h
A gui/us_combined_plots_parms_gui.cpp
A gui/us_combined_plots_parms_gui.h
A gui/us_csv_loader.cpp
A gui/us_csv_loader.h
M gui/us_data_loader.cpp
M gui/us_edit_spectrum.h
M gui/us_editor.h
M gui/us_editor_gui.h
M gui/us_extinctfitter_gui.cpp
M gui/us_extinctfitter_gui.h
M gui/us_extinction_gui.cpp
M gui/us_extinction_gui.h
A gui/us_failed_gmp_run_gui.cpp
A gui/us_failed_gmp_run_gui.h
M gui/us_gui_util.cpp
M gui/us_gui_util.h
M gui/us_help.h
M gui/us_images.cpp
M gui/us_images.h
M gui/us_investigator.cpp
M gui/us_investigator.h
M gui/us_load_auc.cpp
M gui/us_load_auc.h
M gui/us_loadable_noise.h
M gui/us_minimize.cpp
M gui/us_minimize.h
M gui/us_model_gui.cpp
M gui/us_model_gui.h
M gui/us_model_loader.cpp
M gui/us_model_loader.h
M gui/us_mwl_data.cpp
M gui/us_mwl_data.h
M gui/us_new_spectrum.cpp
M gui/us_new_spectrum.h
M gui/us_passwd.cpp
M gui/us_passwd.h
M gui/us_plot.cpp
M gui/us_plot.h
M gui/us_plot3d.cpp
M gui/us_plot3d.h
R gui/us_plot3d_xyz.cpp
R gui/us_plot3d_xyz.h
M gui/us_predict1.h
M gui/us_properties.cpp
M gui/us_properties.h
M gui/us_report_general_gui.cpp
M gui/us_report_general_gui.h
M gui/us_report_gui.cpp
M gui/us_report_gui.h
M gui/us_select_item.cpp
M gui/us_select_item.h
M gui/us_solution_gui.cpp
M gui/us_spectrodata.cpp
M gui/us_spectrodata.h
M gui/us_table.h
M gui/us_tmst_plot.cpp
M gui/us_tmst_plot.h
M gui/us_widgets.cpp
M gui/us_widgets.h
M gui/us_widgets_dialog.cpp
M gui/us_widgets_dialog.h
M library.pri
M mainpage.dox
A make_all.pro
M programs/us/us.cpp
M programs/us/us.h
M programs/us/us_win_data.cpp
M programs/us_2dplot/us_2dplot.h
M programs/us_2dsa/us_2dsa.h
A programs/us_abde/us_abde.pro
A programs/us_abde/us_abde_main.cpp
A programs/us_abde/us_abde_main.h
A programs/us_abde/us_norm_profile.cpp
A programs/us_abde/us_norm_profile.h
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
M programs/us_analysis_profile/us_anapro_utils.cpp
A programs/us_assign_reviewers_gmp/us_assign_reviewers_gmp.pro
A programs/us_assign_reviewers_gmp/us_assign_reviewers_gmp_main.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
A programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
A programs/us_audit_trail_gmp/us_audit_trail_gmp.h
A programs/us_audit_trail_gmp/us_audit_trail_gmp.pro
A programs/us_audit_trail_gmp/us_audit_trail_gmp_main.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.h
M programs/us_autoflow_analysis/us_autoflow_analysis.pro
R programs/us_autoflow_reports/us_autoflow_reports.cpp
R programs/us_autoflow_reports/us_autoflow_reports.h
R programs/us_autoflow_reports/us_autoflow_reports.pro
R programs/us_autoflow_reports/us_autoflow_reports_main.cpp
M programs/us_buoyancy/us_buoyancy.cpp
M programs/us_buoyancy/us_buoyancy.h
M programs/us_buoyancy/us_buoyancy.pro
A programs/us_buoyancy/us_buoyancy_main.cpp
R programs/us_cfa_viewer/us_cfa_run.cpp
R programs/us_cfa_viewer/us_cfa_run.h
R programs/us_cfa_viewer/us_cfa_viewer.cpp
R programs/us_cfa_viewer/us_cfa_viewer.h
R programs/us_cfa_viewer/us_cfa_viewer.pro
M programs/us_com_project/us_com_project.pro
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_com_project_academic/us_com_project_academic.pro
M programs/us_combine_models/us_combine_models.h
M programs/us_config/us_newxpnhost_db.cpp
M programs/us_config/us_xpnhost.cpp
M programs/us_config/us_xpnhost_db.cpp
M programs/us_convert/us_convert.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_convert/us_experiment.cpp
M programs/us_convert/us_experiment.h
M programs/us_convert/us_get_run.cpp
M programs/us_convert/us_get_run.h
M programs/us_dcdt/us_dcdt.h
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_ddist_combine.h
M programs/us_ddist_combine/us_ddist_combine.pro
A programs/us_ddist_combine/us_ddist_combine_main.cpp
M programs/us_density_match/us_density_match.h
M programs/us_dmga_init/us_dmga_init.h
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
M programs/us_edit/us_edit_scan.h
M programs/us_edit/us_exclude_profile.h
M programs/us_edit/us_get_edit.h
M programs/us_edit/us_ri_noise.h
M programs/us_edit/us_select_lambdas.cpp
M programs/us_edit/us_select_lambdas.h
M programs/us_equiltime/us_equiltime.h
A programs/us_esigner_gmp/us_esigner_gmp.cpp
A programs/us_esigner_gmp/us_esigner_gmp.h
A programs/us_esigner_gmp/us_esigner_gmp.pro
A programs/us_esigner_gmp/us_esigner_gmp_main.cpp
A programs/us_esigner_gmp_aux/us_esigner_gmp.pro
A programs/us_esigner_gmp_aux/us_esigner_gmp_main.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment.pro
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_experiment/us_proto_ranges.cpp
M programs/us_export_legacy/us_export.cpp
M programs/us_export_legacy/us_export.h
R programs/us_export_legacy/us_export.pro
A programs/us_export_legacy/us_export_legacy.pro
M programs/us_fds_filemanager/us_fds_filemanager.h
M programs/us_fematch/us_advanced_fem.cpp
M programs/us_fematch/us_advanced_fem.h
M programs/us_fematch/us_fematch.cpp
M programs/us_fematch/us_fematch.h
M programs/us_fematch/us_fematch.pro
M programs/us_fematch/us_plot_control_fem.cpp
M programs/us_fematch/us_plot_control_fem.h
M programs/us_fematch/us_resplot_fem.cpp
M programs/us_fematch/us_resplot_fem.h
M programs/us_fit_meniscus/us_fit_meniscus.cpp
M programs/us_fit_meniscus/us_fit_meniscus.h
M programs/us_fit_meniscus/us_fit_meniscus_main.cpp
M programs/us_ga_init/us_ga_init.h
M programs/us_globalequil/us_eqfit_control.h
M programs/us_globalequil/us_eqhistogram.h
M programs/us_globalequil/us_eqmath.h
M programs/us_globalequil/us_eqmodel_control.h
M programs/us_globalequil/us_eqreporter.h
M programs/us_globalequil/us_fit_worker.h
M programs/us_globalequil/us_globalequil.h
M programs/us_globalequil/us_globeq_data.h
M programs/us_globalequil/us_long_messagebox.h
M programs/us_globalequil/us_model_adpars.h
M programs/us_globalequil/us_model_select.h
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M programs/us_helpdaemon/us_helpdaemon.cpp
M programs/us_integral/us_integral.cpp
M programs/us_integral/us_integral.h
A programs/us_legacy_converter/us_legacy_converter.cpp
A programs/us_legacy_converter/us_legacy_converter.h
A programs/us_legacy_converter/us_legacy_converter.pro
M programs/us_manage_data/us_data_model.h
M programs/us_manage_data/us_data_process.h
M programs/us_manage_data/us_data_tree.h
M programs/us_manage_data/us_manage_data.h
R programs/us_model_gui/modelgui.pro
A programs/us_model_gui/us_model_gui.pro
M programs/us_modelmetrics/us_modelmetrics.h
M programs/us_mpi_analysis/pcsa_master.cpp
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_mpi_analysis/us_mpi_analysis.h
A programs/us_mwl_db_query/us_mwl_db_query.pro
A programs/us_mwl_db_query/us_mwl_pltctrl.cpp
A programs/us_mwl_db_query/us_mwl_pltctrl.h
A programs/us_mwl_db_query/us_mwl_run.cpp
A programs/us_mwl_db_query/us_mwl_run.h
A programs/us_mwl_db_query/us_mwlr_viewer.cpp
A programs/us_mwl_db_query/us_mwlr_viewer.h
M programs/us_mwl_species_fit/us_load_run_noise.h
A programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
A programs/us_mwl_species_fit/us_mwl_sf_plot3d.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.h
M programs/us_mwl_species_fit/us_mwl_species_fit.pro
M programs/us_mwl_species_sim/us_mwl_species_sim.h
M programs/us_mwl_spectra/us_mwl_spectra.cpp
M programs/us_mwl_spectra/us_mwl_spectra.h
M programs/us_mwl_spectra/us_mwls_pltctl.cpp
M programs/us_mwl_spectra/us_mwls_pltctl.h
M programs/us_mwlr_viewer/us_mwl_pltctrl.cpp
M programs/us_mwlr_viewer/us_mwl_pltctrl.h
M programs/us_mwlr_viewer/us_mwl_run.h
M programs/us_mwlr_viewer/us_mwlr_viewer.h
M programs/us_pcsa/us_analysis_control_pc.cpp
M programs/us_pcsa/us_pcsa.h
M programs/us_predict2/us_predict2.h
A programs/us_protocol_dev/us_protocol_dev.pro
A programs/us_protocol_dev/us_protocol_dev_gui.cpp
A programs/us_protocol_dev/us_protocol_dev_gui.h
A programs/us_protocol_dev/us_protocol_dev_main.cpp
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
M programs/us_pseudo3d_combine/us_pseudo3d_combine.pro
A programs/us_pseudo3d_combine/us_pseudo3d_combine_main.cpp
A programs/us_pseudo_absorbance/us_add_refScan.cpp
A programs/us_pseudo_absorbance/us_add_refScan.h
A programs/us_pseudo_absorbance/us_convert_scan.cpp
A programs/us_pseudo_absorbance/us_convert_scan.h
A programs/us_pseudo_absorbance/us_pabs_common.cpp
A programs/us_pseudo_absorbance/us_pabs_common.h
A programs/us_pseudo_absorbance/us_pseudo_absorbance.cpp
A programs/us_pseudo_absorbance/us_pseudo_absorbance.h
A programs/us_pseudo_absorbance/us_pseudo_absorbance.pro
A programs/us_pseudo_absorbance/us_refScan_dataIO.cpp
A programs/us_pseudo_absorbance/us_refScan_dataIO.h
A programs/us_pseudo_absorbance/us_remove_ri.cpp
A programs/us_pseudo_absorbance/us_remove_ri.h
A programs/us_query_rmsd/us_query_rmsd.cpp
A programs/us_query_rmsd/us_query_rmsd.h
A programs/us_query_rmsd/us_query_rmsd.pro
M programs/us_ramp/us_mwlramp.h
M programs/us_rasmol_control/us_rasmol_control.h
A programs/us_reassign_reviewers_gmp/us_reassign_reviewers_gmp.pro
A programs/us_reassign_reviewers_gmp/us_reassign_reviewers_gmp_main.cpp
M programs/us_reporter/us_reporter.h
A programs/us_reporter_gmp/us_reporter_gmp.cpp
A programs/us_reporter_gmp/us_reporter_gmp.h
A programs/us_reporter_gmp/us_reporter_gmp.pro
A programs/us_reporter_gmp/us_reporter_gmp_main.cpp
M programs/us_rotor_calibration/us_get_dbexp.h
M programs/us_rotor_calibration/us_rotor_calibration.cpp
M programs/us_rotor_calibration/us_rotor_calibration.h
M programs/us_second_moment/us_second_moment.h
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
M programs/us_vhw_combine/us_vhw_combine.cpp
M programs/us_vhw_combine/us_vhw_combine.h
M programs/us_vhw_combine/us_vhwc_pltctl.cpp
M programs/us_vhw_combine/us_vhwc_pltctl.h
M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
M programs/us_vhw_enhanced/us_vhw_enhanced.h
M programs/us_xpn_viewer/us_xpn_run_auc.h
M programs/us_xpn_viewer/us_xpn_run_raw.h
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.h
M qwtplot3d/3rdparty/gl2ps/gl2ps.c
M qwtplot3d/src/qwt3d_io_gl2ps.cpp
A test/CMakeLists.txt
A test/utils/CMakeLists.txt
A test/utils/test_us_datafiles.cpp
A test/utils/test_us_datafiles.h
A test/utils/test_us_util.cpp
A test/utils/test_us_util.h
A test/utils/test_us_utils_main.cpp
M us_somo/add_to_bin/iftci_linux64
M us_somo/add_to_bin/iftci_osx10.8
M us_somo/add_to_bin/iftci_win64.exe
M us_somo/develop/generic.pri
A us_somo/develop/include/Eigen/Cholesky
A us_somo/develop/include/Eigen/CholmodSupport
A us_somo/develop/include/Eigen/Core
A us_somo/develop/include/Eigen/Dense
A us_somo/develop/include/Eigen/Eigen
A us_somo/develop/include/Eigen/Eigenvalues
A us_somo/develop/include/Eigen/Geometry
A us_somo/develop/include/Eigen/Householder
A us_somo/develop/include/Eigen/IterativeLinearSolvers
A us_somo/develop/include/Eigen/Jacobi
A us_somo/develop/include/Eigen/KLUSupport
A us_somo/develop/include/Eigen/LU
A us_somo/develop/include/Eigen/MetisSupport
A us_somo/develop/include/Eigen/OrderingMethods
A us_somo/develop/include/Eigen/PaStiXSupport
A us_somo/develop/include/Eigen/PardisoSupport
A us_somo/develop/include/Eigen/QR
A us_somo/develop/include/Eigen/QtAlignedMalloc
A us_somo/develop/include/Eigen/SPQRSupport
A us_somo/develop/include/Eigen/SVD
A us_somo/develop/include/Eigen/Sparse
A us_somo/develop/include/Eigen/SparseCholesky
A us_somo/develop/include/Eigen/SparseCore
A us_somo/develop/include/Eigen/SparseLU
A us_somo/develop/include/Eigen/SparseQR
A us_somo/develop/include/Eigen/StdDeque
A us_somo/develop/include/Eigen/StdList
A us_somo/develop/include/Eigen/StdVector
A us_somo/develop/include/Eigen/SuperLUSupport
A us_somo/develop/include/Eigen/UmfPackSupport
A us_somo/develop/include/Eigen/src/Cholesky/LDLT.h
A us_somo/develop/include/Eigen/src/Cholesky/LLT.h
A us_somo/develop/include/Eigen/src/Cholesky/LLT_LAPACKE.h
A us_somo/develop/include/Eigen/src/CholmodSupport/CholmodSupport.h
A us_somo/develop/include/Eigen/src/Core/ArithmeticSequence.h
A us_somo/develop/include/Eigen/src/Core/Array.h
A us_somo/develop/include/Eigen/src/Core/ArrayBase.h
A us_somo/develop/include/Eigen/src/Core/ArrayWrapper.h
A us_somo/develop/include/Eigen/src/Core/Assign.h
A us_somo/develop/include/Eigen/src/Core/AssignEvaluator.h
A us_somo/develop/include/Eigen/src/Core/Assign_MKL.h
A us_somo/develop/include/Eigen/src/Core/BandMatrix.h
A us_somo/develop/include/Eigen/src/Core/Block.h
A us_somo/develop/include/Eigen/src/Core/BooleanRedux.h
A us_somo/develop/include/Eigen/src/Core/CommaInitializer.h
A us_somo/develop/include/Eigen/src/Core/ConditionEstimator.h
A us_somo/develop/include/Eigen/src/Core/CoreEvaluators.h
A us_somo/develop/include/Eigen/src/Core/CoreIterators.h
A us_somo/develop/include/Eigen/src/Core/CwiseBinaryOp.h
A us_somo/develop/include/Eigen/src/Core/CwiseNullaryOp.h
A us_somo/develop/include/Eigen/src/Core/CwiseTernaryOp.h
A us_somo/develop/include/Eigen/src/Core/CwiseUnaryOp.h
A us_somo/develop/include/Eigen/src/Core/CwiseUnaryView.h
A us_somo/develop/include/Eigen/src/Core/DenseBase.h
A us_somo/develop/include/Eigen/src/Core/DenseCoeffsBase.h
A us_somo/develop/include/Eigen/src/Core/DenseStorage.h
A us_somo/develop/include/Eigen/src/Core/Diagonal.h
A us_somo/develop/include/Eigen/src/Core/DiagonalMatrix.h
A us_somo/develop/include/Eigen/src/Core/DiagonalProduct.h
A us_somo/develop/include/Eigen/src/Core/Dot.h
A us_somo/develop/include/Eigen/src/Core/EigenBase.h
A us_somo/develop/include/Eigen/src/Core/ForceAlignedAccess.h
A us_somo/develop/include/Eigen/src/Core/Fuzzy.h
A us_somo/develop/include/Eigen/src/Core/GeneralProduct.h
A us_somo/develop/include/Eigen/src/Core/GenericPacketMath.h
A us_somo/develop/include/Eigen/src/Core/GlobalFunctions.h
A us_somo/develop/include/Eigen/src/Core/IO.h
A us_somo/develop/include/Eigen/src/Core/IndexedView.h
A us_somo/develop/include/Eigen/src/Core/Inverse.h
A us_somo/develop/include/Eigen/src/Core/Map.h
A us_somo/develop/include/Eigen/src/Core/MapBase.h
A us_somo/develop/include/Eigen/src/Core/MathFunctions.h
A us_somo/develop/include/Eigen/src/Core/MathFunctionsImpl.h
A us_somo/develop/include/Eigen/src/Core/Matrix.h
A us_somo/develop/include/Eigen/src/Core/MatrixBase.h
A us_somo/develop/include/Eigen/src/Core/NestByValue.h
A us_somo/develop/include/Eigen/src/Core/NoAlias.h
A us_somo/develop/include/Eigen/src/Core/NumTraits.h
A us_somo/develop/include/Eigen/src/Core/PartialReduxEvaluator.h
A us_somo/develop/include/Eigen/src/Core/PermutationMatrix.h
A us_somo/develop/include/Eigen/src/Core/PlainObjectBase.h
A us_somo/develop/include/Eigen/src/Core/Product.h
A us_somo/develop/include/Eigen/src/Core/ProductEvaluators.h
A us_somo/develop/include/Eigen/src/Core/Random.h
A us_somo/develop/include/Eigen/src/Core/Redux.h
A us_somo/develop/include/Eigen/src/Core/Ref.h
A us_somo/develop/include/Eigen/src/Core/Replicate.h
A us_somo/develop/include/Eigen/src/Core/Reshaped.h
A us_somo/develop/include/Eigen/src/Core/ReturnByValue.h
A us_somo/develop/include/Eigen/src/Core/Reverse.h
A us_somo/develop/include/Eigen/src/Core/Select.h
A us_somo/develop/include/Eigen/src/Core/SelfAdjointView.h
A us_somo/develop/include/Eigen/src/Core/SelfCwiseBinaryOp.h
A us_somo/develop/include/Eigen/src/Core/Solve.h
A us_somo/develop/include/Eigen/src/Core/SolveTriangular.h
A us_somo/develop/include/Eigen/src/Core/SolverBase.h
A us_somo/develop/include/Eigen/src/Core/StableNorm.h
A us_somo/develop/include/Eigen/src/Core/StlIterators.h
A us_somo/develop/include/Eigen/src/Core/Stride.h
A us_somo/develop/include/Eigen/src/Core/Swap.h
A us_somo/develop/include/Eigen/src/Core/Transpose.h
A us_somo/develop/include/Eigen/src/Core/Transpositions.h
A us_somo/develop/include/Eigen/src/Core/TriangularMatrix.h
A us_somo/develop/include/Eigen/src/Core/VectorBlock.h
A us_somo/develop/include/Eigen/src/Core/VectorwiseOp.h
A us_somo/develop/include/Eigen/src/Core/Visitor.h
A us_somo/develop/include/Eigen/src/Core/arch/AVX/Complex.h
A us_somo/develop/include/Eigen/src/Core/arch/AVX/MathFunctions.h
A us_somo/develop/include/Eigen/src/Core/arch/AVX/PacketMath.h
A us_somo/develop/include/Eigen/src/Core/arch/AVX/TypeCasting.h
A us_somo/develop/include/Eigen/src/Core/arch/AVX512/Complex.h
A us_somo/develop/include/Eigen/src/Core/arch/AVX512/MathFunctions.h
A us_somo/develop/include/Eigen/src/Core/arch/AVX512/PacketMath.h
A us_somo/develop/include/Eigen/src/Core/arch/AVX512/TypeCasting.h
A us_somo/develop/include/Eigen/src/Core/arch/AltiVec/Complex.h
A us_somo/develop/include/Eigen/src/Core/arch/AltiVec/MathFunctions.h
A us_somo/develop/include/Eigen/src/Core/arch/AltiVec/MatrixProduct.h
A us_somo/develop/include/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h
A us_somo/develop/include/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h
A us_somo/develop/include/Eigen/src/Core/arch/AltiVec/PacketMath.h
A us_somo/develop/include/Eigen/src/Core/arch/CUDA/Complex.h
A us_somo/develop/include/Eigen/src/Core/arch/Default/BFloat16.h
A us_somo/develop/include/Eigen/src/Core/arch/Default/ConjHelper.h
A us_somo/develop/include/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h
A us_somo/develop/include/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h
A us_somo/develop/include/Eigen/src/Core/arch/Default/Half.h
A us_somo/develop/include/Eigen/src/Core/arch/Default/Settings.h
A us_somo/develop/include/Eigen/src/Core/arch/Default/TypeCasting.h
A us_somo/develop/include/Eigen/src/Core/arch/GPU/MathFunctions.h
A us_somo/develop/include/Eigen/src/Core/arch/GPU/PacketMath.h
A us_somo/develop/include/Eigen/src/Core/arch/GPU/TypeCasting.h
A us_somo/develop/include/Eigen/src/Core/arch/HIP/hcc/math_constants.h
A us_somo/develop/include/Eigen/src/Core/arch/MSA/Complex.h
A us_somo/develop/include/Eigen/src/Core/arch/MSA/MathFunctions.h
A us_somo/develop/include/Eigen/src/Core/arch/MSA/PacketMath.h
A us_somo/develop/include/Eigen/src/Core/arch/NEON/Complex.h
A us_somo/develop/include/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h
A us_somo/develop/include/Eigen/src/Core/arch/NEON/MathFunctions.h
A us_somo/develop/include/Eigen/src/Core/arch/NEON/PacketMath.h
A us_somo/develop/include/Eigen/src/Core/arch/NEON/TypeCasting.h
A us_somo/develop/include/Eigen/src/Core/arch/SSE/Complex.h
A us_somo/develop/include/Eigen/src/Core/arch/SSE/MathFunctions.h
A us_somo/develop/include/Eigen/src/Core/arch/SSE/PacketMath.h
A us_somo/develop/include/Eigen/src/Core/arch/SSE/TypeCasting.h
A us_somo/develop/include/Eigen/src/Core/arch/SVE/MathFunctions.h
A us_somo/develop/include/Eigen/src/Core/arch/SVE/PacketMath.h
A us_somo/develop/include/Eigen/src/Core/arch/SVE/TypeCasting.h
A us_somo/develop/include/Eigen/src/Core/arch/SYCL/InteropHeaders.h
A us_somo/develop/include/Eigen/src/Core/arch/SYCL/MathFunctions.h
A us_somo/develop/include/Eigen/src/Core/arch/SYCL/PacketMath.h
A us_somo/develop/include/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h
A us_somo/develop/include/Eigen/src/Core/arch/SYCL/TypeCasting.h
A us_somo/develop/include/Eigen/src/Core/arch/ZVector/Complex.h
A us_somo/develop/include/Eigen/src/Core/arch/ZVector/MathFunctions.h
A us_somo/develop/include/Eigen/src/Core/arch/ZVector/PacketMath.h
A us_somo/develop/include/Eigen/src/Core/functors/AssignmentFunctors.h
A us_somo/develop/include/Eigen/src/Core/functors/BinaryFunctors.h
A us_somo/develop/include/Eigen/src/Core/functors/NullaryFunctors.h
A us_somo/develop/include/Eigen/src/Core/functors/StlFunctors.h
A us_somo/develop/include/Eigen/src/Core/functors/TernaryFunctors.h
A us_somo/develop/include/Eigen/src/Core/functors/UnaryFunctors.h
A us_somo/develop/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h
A us_somo/develop/include/Eigen/src/Core/products/GeneralMatrixMatrix.h
A us_somo/develop/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h
A us_somo/develop/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h
A us_somo/develop/include/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h
A us_somo/develop/include/Eigen/src/Core/products/GeneralMatrixVector.h
A us_somo/develop/include/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h
A us_somo/develop/include/Eigen/src/Core/products/Parallelizer.h
A us_somo/develop/include/Eigen/src/Core/products/SelfadjointMatrixMatrix.h
A us_somo/develop/include/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h
A us_somo/develop/include/Eigen/src/Core/products/SelfadjointMatrixVector.h
A us_somo/develop/include/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h
A us_somo/develop/include/Eigen/src/Core/products/SelfadjointProduct.h
A us_somo/develop/include/Eigen/src/Core/products/SelfadjointRank2Update.h
A us_somo/develop/include/Eigen/src/Core/products/TriangularMatrixMatrix.h
A us_somo/develop/include/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h
A us_somo/develop/include/Eigen/src/Core/products/TriangularMatrixVector.h
A us_somo/develop/include/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h
A us_somo/develop/include/Eigen/src/Core/products/TriangularSolverMatrix.h
A us_somo/develop/include/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h
A us_somo/develop/include/Eigen/src/Core/products/TriangularSolverVector.h
A us_somo/develop/include/Eigen/src/Core/util/BlasUtil.h
A us_somo/develop/include/Eigen/src/Core/util/ConfigureVectorization.h
A us_somo/develop/include/Eigen/src/Core/util/Constants.h
A us_somo/develop/include/Eigen/src/Core/util/DisableStupidWarnings.h
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A us_somo/develop/include/Eigen/src/Core/util/IndexedViewHelper.h
A us_somo/develop/include/Eigen/src/Core/util/IntegralConstant.h
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A us_somo/develop/include/Eigen/src/Core/util/StaticAssert.h
A us_somo/develop/include/Eigen/src/Core/util/SymbolicIndex.h
A us_somo/develop/include/Eigen/src/Core/util/XprHelper.h
A us_somo/develop/include/Eigen/src/Eigenvalues/ComplexEigenSolver.h
A us_somo/develop/include/Eigen/src/Eigenvalues/ComplexSchur.h
A us_somo/develop/include/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h
A us_somo/develop/include/Eigen/src/Eigenvalues/EigenSolver.h
A us_somo/develop/include/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h
A us_somo/develop/include/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h
A us_somo/develop/include/Eigen/src/Eigenvalues/HessenbergDecomposition.h
A us_somo/develop/include/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h
A us_somo/develop/include/Eigen/src/Eigenvalues/RealQZ.h
A us_somo/develop/include/Eigen/src/Eigenvalues/RealSchur.h
A us_somo/develop/include/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h
A us_somo/develop/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h
A us_somo/develop/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h
A us_somo/develop/include/Eigen/src/Eigenvalues/Tridiagonalization.h
A us_somo/develop/include/Eigen/src/Geometry/AlignedBox.h
A us_somo/develop/include/Eigen/src/Geometry/AngleAxis.h
A us_somo/develop/include/Eigen/src/Geometry/EulerAngles.h
A us_somo/develop/include/Eigen/src/Geometry/Homogeneous.h
A us_somo/develop/include/Eigen/src/Geometry/Hyperplane.h
A us_somo/develop/include/Eigen/src/Geometry/OrthoMethods.h
A us_somo/develop/include/Eigen/src/Geometry/ParametrizedLine.h
A us_somo/develop/include/Eigen/src/Geometry/Quaternion.h
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A us_somo/somo/doc/manual/somo/somo_vdw_overlap.html
A us_somo/somo/doc/manual/somo/uv_vis_options.html
A utils/CMakeLists.txt
M utils/libus_utils.pro
M utils/us_ana_profile.cpp
M utils/us_ana_profile.h
M utils/us_astfem_math.cpp
M utils/us_buffer.cpp
M utils/us_buffer.h
M utils/us_cfa_data.h
M utils/us_constants.h
M utils/us_crypto.cpp
M utils/us_datafiles.cpp
M utils/us_datafiles.h
M utils/us_db2.cpp
M utils/us_extern.h
M utils/us_extinctutils.h
A utils/us_geturl.cpp
A utils/us_geturl.h
M utils/us_global.cpp
M utils/us_global.h
M utils/us_gzip.cpp
M utils/us_gzip.h
M utils/us_link_ssl.cpp
M utils/us_link_ssl.h
M utils/us_local_server.h
M utils/us_math2.cpp
M utils/us_math2.h
M utils/us_model.cpp
M utils/us_model.h
M utils/us_noise.h
M utils/us_project.cpp
M utils/us_project.h
M utils/us_protocol_util.cpp
M utils/us_protocol_util.h
M utils/us_report.cpp
M utils/us_report.h
M utils/us_report_gmp.cpp
M utils/us_report_gmp.h
M utils/us_run_protocol.cpp
M utils/us_run_protocol.h
M utils/us_solve_sim.h
M utils/us_tar.cpp
M utils/us_tar.h
M utils/us_timer.h
M utils/us_util.cpp
M utils/us_vector.h
M utils/us_xpn_data.cpp
M utils/us_xpn_data.h
Log Message:
-----------
Merge pull request #1 from ehb54/master
Merge ehb54/master to ultrascan3
Commit: 15eb3360f877fb8f22023b2d5683c7a994362745
https://github.com/ehb54/ultrascan3/commit/15eb3360f877fb8f22023b2d5683c7a994362745
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-10-02 (Wed, 02 Oct 2024)
Changed paths:
M utils/us_archive.cpp
M utils/us_archive.h
Log Message:
-----------
us_archive: add the extract(const QString&, const QString&) function. Edit the doc strings.
Commit: 61e26bc8ab2104fea870c28718c0a56de365d8f9
https://github.com/ehb54/ultrascan3/commit/61e26bc8ab2104fea870c28718c0a56de365d8f9
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-10-02 (Wed, 02 Oct 2024)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
Log Message:
-----------
us_legacy_converter: used the latest version of the US_Archive. Show files when they're extracted in the text edit widget
Commit: 63365f718f5ca332c1080362c81d6c691346077b
https://github.com/ehb54/ultrascan3/commit/63365f718f5ca332c1080362c81d6c691346077b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-02 (Wed, 02 Oct 2024)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
[SQL for ] -- GMP : Data from local Disk -- [bug fixes] more work on submission of the 'autoflow' run in 1. EXP. stage ...
Commit: 64ed28cebb9045c0970fb0f9712730201b148db1
https://github.com/ehb54/ultrascan3/commit/64ed28cebb9045c0970fb0f9712730201b148db1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-02 (Wed, 02 Oct 2024)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
Log Message:
-----------
GMP : Data from local Disk -- [bug fixes1] more work on submission of the 'autoflow' run in 1. EXP. stage ...
Commit: 68794666b196d9f89f9d46f29538bece2df45f80
https://github.com/ehb54/ultrascan3/commit/68794666b196d9f89f9d46f29538bece2df45f80
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-02 (Wed, 02 Oct 2024)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
Log Message:
-----------
GMP : Data from local Disk -- [bug fixes2] more work on submission of the 'autoflow' run in 1. EXP. stage ...
Commit: a9f09822926f76ed4da4e14b3b84115ddcef2c71
https://github.com/ehb54/ultrascan3/commit/a9f09822926f76ed4da4e14b3b84115ddcef2c71
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-02 (Wed, 02 Oct 2024)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
Log Message:
-----------
GMP : Data from local Disk -- [bug fixes3] more work on submission of the 'autoflow' run in 1. EXP. stage ...
Commit: d375f5363fef31b0a1cbed1388620d9647a0665d
https://github.com/ehb54/ultrascan3/commit/d375f5363fef31b0a1cbed1388620d9647a0665d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-02 (Wed, 02 Oct 2024)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
Log Message:
-----------
GMP : Data from local Disk -- [bug fixes3a] more work on submission of the 'autoflow' run in 1. EXP. stage ...
Commit: ab22ea6598637e85139fbe1ec2b745bea492a55f
https://github.com/ehb54/ultrascan3/commit/ab22ea6598637e85139fbe1ec2b745bea492a55f
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2024-10-03 (Thu, 03 Oct 2024)
Changed paths:
M gui/us_license.cpp
M gui/us_license.h
Log Message:
-----------
Merge pull request #134 from demeler/358-enhancement-information-needed-to-register-ultrascan
358 enhancement information needed to register ultrascan
Commit: d8e2ff4f514e7aebe80bc30c106fd25b21a3a866
https://github.com/ehb54/ultrascan3/commit/d8e2ff4f514e7aebe80bc30c106fd25b21a3a866
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2024-10-03 (Thu, 03 Oct 2024)
Changed paths:
M gui/us_license.cpp
Log Message:
-----------
Force old informations to n/a
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 9be1dbb3669af0df991925db2be51ee6d7e722e4
https://github.com/ehb54/ultrascan3/commit/9be1dbb3669af0df991925db2be51ee6d7e722e4
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2024-10-03 (Thu, 03 Oct 2024)
Changed paths:
M gui/us_license.cpp
M gui/us_license.h
Log Message:
-----------
Merge pull request #135 from ehb54/358-enhancement-information-needed-to-register-ultrascan
358 enhancement information needed to register ultrascan reduced to necessary ones
Commit: 27ee749aabb44427e33efde82a916eaf7fb87939
https://github.com/ehb54/ultrascan3/commit/27ee749aabb44427e33efde82a916eaf7fb87939
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-03 (Thu, 03 Oct 2024)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP : Data from local Disk -- set dataSource explicitly in 1. EXP for later ease of processing ...
Commit: f7f56c7b1b716c511bd945b5689cbd17c4b377ba
https://github.com/ehb54/ultrascan3/commit/f7f56c7b1b716c511bd945b5689cbd17c4b377ba
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-10-03 (Thu, 03 Oct 2024)
Changed paths:
M utils/us_archive.cpp
M utils/us_archive.h
Log Message:
-----------
us_archive: complete extract and compress functions to support relative and absolute paths
Commit: d76493bb67e6d230300113a521794573dfc433ba
https://github.com/ehb54/ultrascan3/commit/d76493bb67e6d230300113a521794573dfc433ba
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-10-03 (Thu, 03 Oct 2024)
Changed paths:
M admin/codeql/docker/docker/Dockerfile
M admin/codeql/docker/dockerdev/Dockerfile
M admin/release/centos7/Dockerfile
M admin/release/redhat/Dockerfile
M admin/release/ubuntu/Dockerfile
Log Message:
-----------
edit docker files to support libarchive
Commit: ab214dd8d0450512ee7b023f6d0658ea7c3568cc
https://github.com/ehb54/ultrascan3/commit/ab214dd8d0450512ee7b023f6d0658ea7c3568cc
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2024-10-04 (Fri, 04 Oct 2024)
Changed paths:
M programs/us_convert/us_convert.cpp
Log Message:
-----------
Fix: Calculate correct offset for omega2t if adjusting acceleration rate
Commit: f08190c87108b43ff808cb692561c005f2106615
https://github.com/ehb54/ultrascan3/commit/f08190c87108b43ff808cb692561c005f2106615
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2024-10-04 (Fri, 04 Oct 2024)
Changed paths:
M utils/us_simparms.cpp
Log Message:
-----------
Fix: Calculate proper SimulationSpeedProfile for one timestep acceleration phases
Commit: 011bf5f21e2326a9db9d073276102c629aff1e1c
https://github.com/ehb54/ultrascan3/commit/011bf5f21e2326a9db9d073276102c629aff1e1c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-04 (Fri, 04 Oct 2024)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
GMP : Data from local Disk -- current bug fixes.. ...
Commit: 33218275bb8a408cd5cf3d95c4fc5c45da35d099
https://github.com/ehb54/ultrascan3/commit/33218275bb8a408cd5cf3d95c4fc5c45da35d099
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-04 (Fri, 04 Oct 2024)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment.pro
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP : Data from local Disk -- further development; inherit minimally required information from uploaded data from disk...
Commit: bc28ebca485fb06340124a73e1ac3ce508882c2f
https://github.com/ehb54/ultrascan3/commit/bc28ebca485fb06340124a73e1ac3ce508882c2f
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-10-05 (Sat, 05 Oct 2024)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
add apt-get install -y libarchive to the github codeql workflow
Commit: f94580ff3fbcbabbef2bcdfe0bd25e1e873df4a4
https://github.com/ehb54/ultrascan3/commit/f94580ff3fbcbabbef2bcdfe0bd25e1e873df4a4
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-10-06 (Sun, 06 Oct 2024)
Changed paths:
M admin/codeql/docker/docker/Dockerfile
M admin/codeql/docker/dockerdev/Dockerfile
M admin/release/centos7/Dockerfile
M admin/release/redhat/Dockerfile
M admin/release/ubuntu/Dockerfile
Log Message:
-----------
Merge pull request #136 from samo38/docker_update
edit docker files to support libarchive
Commit: f98d2a6108fb5d7aac3768ea7f8b1e20d7f5b7b0
https://github.com/ehb54/ultrascan3/commit/f98d2a6108fb5d7aac3768ea7f8b1e20d7f5b7b0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-06 (Sun, 06 Oct 2024)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP : Data from local Disk -- critical information from uploaded data, either single-wvl, or MWL, is properly inherited for generation of the consistent protocol; this inheritance is neccessary for the proper port into the entire GMP framework...
Commit: f91ca5b30bcbc823ee76f28a2f9b95928cd82a90
https://github.com/ehb54/ultrascan3/commit/f91ca5b30bcbc823ee76f28a2f9b95928cd82a90
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-10-07 (Mon, 07 Oct 2024)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
codeql-analysis: add libarchive to analyze-gui, analyze-somo
Commit: c11cb7ea31b7f66e946b99b723d2245ca627cc5d
https://github.com/ehb54/ultrascan3/commit/c11cb7ea31b7f66e946b99b723d2245ca627cc5d
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-10-07 (Mon, 07 Oct 2024)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
removed libarchive from somo codeql workflow
Commit: 8de3cdf6f50554934232f2120408f512737e1393
https://github.com/ehb54/ultrascan3/commit/8de3cdf6f50554934232f2120408f512737e1393
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-07 (Mon, 07 Oct 2024)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP : Data from local Disk -- [ more on.. ] critical information from uploaded data, either single-wvl, or MWL, is properly inherited for generation of the consistent protocol; this inheritance is neccessary for the proper port into the entire GMP framework...
Commit: 2b6fc69b86923057271b67885f60ff46b657a70b
https://github.com/ehb54/ultrascan3/commit/2b6fc69b86923057271b67885f60ff46b657a70b
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-10-07 (Mon, 07 Oct 2024)
Changed paths:
M .github/workflows/codeql-analysis.yml
M library.pri
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
M utils/libus_utils.pro
A utils/us_archive.cpp
A utils/us_archive.h
Log Message:
-----------
Merge pull request #137 from samo38/us_archive
US_Archive utils class
Commit: 7be8d707373f726ac5797dd59b5c97adc1806e6c
https://github.com/ehb54/ultrascan3/commit/7be8d707373f726ac5797dd59b5c97adc1806e6c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-07 (Mon, 07 Oct 2024)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_edit/us_edit.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
GMP : Data from local Disk -- change of the syntax of some stored procs at different stages to not rely on the runID and/or Optima name - there will be no of these for the GMP runs based on imported from disk data...
Commit: 0b486a08efd565879adcf63b767693732a5aebf0
https://github.com/ehb54/ultrascan3/commit/0b486a08efd565879adcf63b767693732a5aebf0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-09 (Wed, 09 Oct 2024)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M utils/us_run_protocol.cpp
Log Message:
-----------
GMP : Data from local Disk -- when regular protocol uploaded after the source was set to 'FromDisk' & data imported, do proper cleanup of the internals/gui for proper operation...
Commit: ff4267894662cc9e411e26416fd70f13418a804c
https://github.com/ehb54/ultrascan3/commit/ff4267894662cc9e411e26416fd70f13418a804c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-10 (Thu, 10 Oct 2024)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP : Data from local Disk [.auc] -- enable to load & process also combined RI+IP data...
Commit: 6f90f67a2a073338fcd8bed11033f4055622487b
https://github.com/ehb54/ultrascan3/commit/6f90f67a2a073338fcd8bed11033f4055622487b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-10 (Thu, 10 Oct 2024)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- addreseed problem in ticket #369 [DUPLICATE] - oncorrect filenames were generated for combined RI+IP types, was not possible to eSign...
Commit: f92b0c167a9f52a8de78ffa94f069a456f5acff7
https://github.com/ehb54/ultrascan3/commit/f92b0c167a9f52a8de78ffa94f069a456f5acff7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-10 (Thu, 10 Oct 2024)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
Log Message:
-----------
for issue 557...
Commit: 79c621074606707565452dd5f2c6569e9ee66301
https://github.com/ehb54/ultrascan3/commit/79c621074606707565452dd5f2c6569e9ee66301
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-11 (Fri, 11 Oct 2024)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP : Data from local Disk [.auc] -- manually incorporated changes from branch #357 which existed at the time of creating branch #367...
Commit: 20cbbc968bf423b1ac397f98203da21435596aa5
https://github.com/ehb54/ultrascan3/commit/20cbbc968bf423b1ac397f98203da21435596aa5
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2024-10-11 (Fri, 11 Oct 2024)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
Merge pull request #132 from ehb54/alexey-dev-issue357
GMP: REPORTING -- mods for ussue 357 on how to treat the report, gmp …
Commit: 5dcdee93f2067ba95e8f63f0c896c4d86325f534
https://github.com/ehb54/ultrascan3/commit/5dcdee93f2067ba95e8f63f0c896c4d86325f534
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-13 (Sun, 13 Oct 2024)
Changed paths:
M .github/workflows/codeql-analysis.yml
M admin/codeql/docker/docker/Dockerfile
M admin/codeql/docker/dockerdev/Dockerfile
M admin/release/centos7/Dockerfile
M admin/release/redhat/Dockerfile
M admin/release/ubuntu/Dockerfile
M gui/us_license.cpp
M gui/us_license.h
M library.pri
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M utils/libus_utils.pro
A utils/us_archive.cpp
A utils/us_archive.h
Log Message:
-----------
Merge pull request #140 from ehb54/master
bring banch alexey-dev-issue365 to the master state
Commit: 7ca9363e061b5e8a454c02ff2a7e291d339ae93e
https://github.com/ehb54/ultrascan3/commit/7ca9363e061b5e8a454c02ff2a7e291d339ae93e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-13 (Sun, 13 Oct 2024)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- update for audit trail...
Commit: 0bea2c36c753806284e4f32f42dca1c9203690e0
https://github.com/ehb54/ultrascan3/commit/0bea2c36c753806284e4f32f42dca1c9203690e0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-13 (Sun, 13 Oct 2024)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_edit/us_edit.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
Log Message:
-----------
GMP & ProtocolDev : additions to issue #365; some other related 4bugs noticed fixed ...
Commit: 11c24295c8e147aa8d2545c9eea97afe55372244
https://github.com/ehb54/ultrascan3/commit/11c24295c8e147aa8d2545c9eea97afe55372244
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2024-10-13 (Sun, 13 Oct 2024)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_edit/us_edit.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
Log Message:
-----------
Merge pull request #141 from ehb54/alexey-dev-issue365
Alexey dev issue365: When run defined as FAILED and reinitiated, submitter's info was missing in Report and audit trail
Commit: 4905f414e538675315c1e98569e7fa28a1879dbe
https://github.com/ehb54/ultrascan3/commit/4905f414e538675315c1e98569e7fa28a1879dbe
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-13 (Sun, 13 Oct 2024)
Changed paths:
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
GMP, R&D: 2. LIVE UPDATE : reverse early-stage live update to the earlier (stable) behavior...
Commit: 2f0c7e64cfa24f18d7807bfd8f56abb36d64f02b
https://github.com/ehb54/ultrascan3/commit/2f0c7e64cfa24f18d7807bfd8f56abb36d64f02b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-14 (Mon, 14 Oct 2024)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP : Data from local Disk [.auc] -- informing message on the important parameters of the data upon upload, and comprehensive check for correspondence between the protocol and data uploaded before submission...
Commit: 1ceab41892793b2aae8de7395717fa29494d6d99
https://github.com/ehb54/ultrascan3/commit/1ceab41892793b2aae8de7395717fa29494d6d99
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-15 (Tue, 15 Oct 2024)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- append the runID with the GMP run number to make it unique before DB saving in case same data from disk analyses many times...
Commit: b89e524abb37eeb765ff1f2fb0a6b1f4c7399dc7
https://github.com/ehb54/ultrascan3/commit/b89e524abb37eeb765ff1f2fb0a6b1f4c7399dc7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-15 (Tue, 15 Oct 2024)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- for these runs, show 'Optima Run Status' as 'N/A' in the Run Manager...
Commit: a8927c0ed3742f1a1579d568988263bb9b931766
https://github.com/ehb54/ultrascan3/commit/a8927c0ed3742f1a1579d568988263bb9b931766
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-15 (Tue, 15 Oct 2024)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- [bug fix for ..] append the runID with the GMP run number to make it unique before DB saving in case same data from disk analyses many times...
Commit: ac1b825ceb3133880cfbf311136c72893ecbb923
https://github.com/ehb54/ultrascan3/commit/ac1b825ceb3133880cfbf311136c72893ecbb923
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-10-16 (Wed, 16 Oct 2024)
Changed paths:
M programs/us_mpi_analysis/us_mpi_analysis.cpp
Log Message:
-----------
us_mpi_analysis: replaced US_Tar with US_Archive
Commit: 0c0f83844e0bbefb4d12101c1ae518f9caeb7873
https://github.com/ehb54/ultrascan3/commit/0c0f83844e0bbefb4d12101c1ae518f9caeb7873
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-10-16 (Wed, 16 Oct 2024)
Changed paths:
M utils/us_archive.cpp
M utils/us_archive.h
Log Message:
-----------
us_archive: add an optional string list to see the extracted file
Commit: 4906d21165b0ae14f6c4028282f0edbb06dd07a9
https://github.com/ehb54/ultrascan3/commit/4906d21165b0ae14f6c4028282f0edbb06dd07a9
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2024-10-17 (Thu, 17 Oct 2024)
Changed paths:
M programs/us_2dsa/us_2dsa.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M utils/us_simparms.cpp
Log Message:
-----------
Prevent corrupted speed steps causing division by zero crash
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: a7ff71ce24dcd590778b2675c593cdefd4a6ae1b
https://github.com/ehb54/ultrascan3/commit/a7ff71ce24dcd590778b2675c593cdefd4a6ae1b
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2024-10-17 (Thu, 17 Oct 2024)
Changed paths:
M programs/us_2dsa/us_2dsa.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
Formatting
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 37a62fa88fbda5ae7bd77f4d701a05f1df1dc9e9
https://github.com/ehb54/ultrascan3/commit/37a62fa88fbda5ae7bd77f4d701a05f1df1dc9e9
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2024-10-17 (Thu, 17 Oct 2024)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
Remove fix because unsure if needed, added compiler warning for someone to check
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 0c2054f62f010f8a436da67effceb399bc8ef3c7
https://github.com/ehb54/ultrascan3/commit/0c2054f62f010f8a436da67effceb399bc8ef3c7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-17 (Thu, 17 Oct 2024)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP : UTC time in report -- except header, real changes are in SQL (to be bound to this issue)...
Commit: c1b74a84a13e13f3db0c1e8c290a1a0aef683e0a
https://github.com/ehb54/ultrascan3/commit/c1b74a84a13e13f3db0c1e8c290a1a0aef683e0a
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-17 (Thu, 17 Oct 2024)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
Log Message:
-----------
GMP : UTC time in e-signer, audit_trail -- all times in .pdf(s) & GUI are UTC...
Commit: 840dabf114615f39a3ed679ec6c7a6edeeaa536f
https://github.com/ehb54/ultrascan3/commit/840dabf114615f39a3ed679ec6c7a6edeeaa536f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-18 (Fri, 18 Oct 2024)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- removed restriction of 50 chars in length for the runName in the GMP framework - several last characters are critially important as they include either the run# from Optima, or differentiate data coming form Disk load; ...
Commit: 9aa691ff0d4933b28d7a4d4dfcea98a60df427a3
https://github.com/ehb54/ultrascan3/commit/9aa691ff0d4933b28d7a4d4dfcea98a60df427a3
Author: aaron <aaron at aucsolutions.com>
Date: 2024-10-20 (Sun, 20 Oct 2024)
Changed paths:
M LICENSE.txt
M alpha/us.cpp
M doc/manual/advanced_config.body
M doc/manual/convert.body
M doc/manual/ultrascan3.txt
M programs/us/us_de_DE.ts
M us_somo/attic/INSTALL
M us_somo/develop/src/us_hydrodyn_dad.cpp
M us_somo/develop/src/us_hydrodyn_mals.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc.cpp
M us_somo/develop/src/us_util.cpp
M us_somo/extra/haddock/bin_i73/mpi/runjob
M us_somo/somo/doc/manual/somo/IntegralBaselineTheory.html
M us_somo/somo/doc/manual/somo/baseline_best.html
M us_somo/somo/doc/manual/somo/copyright.html
M us_somo/somo/doc/manual/somo/cormap.html
M us_somo/somo/doc/manual/somo/dad_parameters.html
M us_somo/somo/doc/manual/somo/fractal_dimension_options.html
M us_somo/somo/doc/manual/somo/mals_options.html
M us_somo/somo/doc/manual/somo/mals_parameters.html
M us_somo/somo/doc/manual/somo/mals_saxs_options.html
M us_somo/somo/doc/manual/somo/saxs_hplc_Gaussian_theory.html
M us_somo/somo/doc/manual/somo/saxs_hplc_ciq.html
M us_somo/somo/doc/manual/somo/saxs_hplc_conc_csv_frames.html
M us_somo/somo/doc/manual/somo/saxs_hplc_dctr.html
M us_somo/somo/doc/manual/somo/saxs_hplc_nth.html
M us_somo/somo/doc/manual/somo/saxs_hplc_options.html
M us_somo/somo/doc/manual/somo/saxs_hplc_p3d.html
M us_somo/somo/doc/manual/somo/saxs_hplc_parameters.html
M us_somo/somo/doc/manual/somo/saxs_ift.html
M us_somo/somo/doc/manual/somo/somo.html
M us_somo/somo/doc/manual/somo/somo_BEST_Analysis.html
M us_somo/somo/doc/manual/somo/somo_BEST_setup.html
M us_somo/somo/doc/manual/somo/somo_Dammin_Dammif_bead_model_properties.html
M us_somo/somo/doc/manual/somo/somo_SAXS_search.html
M us_somo/somo/doc/manual/somo/somo_add_saxs.html
M us_somo/somo/doc/manual/somo/somo_addatom.html
M us_somo/somo/doc/manual/somo/somo_addhybridization.html
M us_somo/somo/doc/manual/somo/somo_advanced_config.html
M us_somo/somo/doc/manual/somo/somo_anaflex_options.html
M us_somo/somo/doc/manual/somo/somo_asa.html
M us_somo/somo/doc/manual/somo/somo_batch.html
M us_somo/somo/doc/manual/somo/somo_bd_options.html
M us_somo/somo/doc/manual/somo/somo_bead_model_format.html
M us_somo/somo/doc/manual/somo/somo_bead_output.html
M us_somo/somo/doc/manual/somo/somo_cluster.html
M us_somo/somo/doc/manual/somo/somo_cluster_advanced_options.html
M us_somo/somo/doc/manual/somo/somo_cluster_config.html
M us_somo/somo/doc/manual/somo/somo_cluster_dmd.html
M us_somo/somo/doc/manual/somo/somo_cluster_results.html
M us_somo/somo/doc/manual/somo/somo_cluster_status.html
M us_somo/somo/doc/manual/somo/somo_cluster_submit.html
M us_somo/somo/doc/manual/somo/somo_comparative.html
M us_somo/somo/doc/manual/somo/somo_dammin_opts.html
M us_somo/somo/doc/manual/somo/somo_dmd_options.html
M us_somo/somo/doc/manual/somo/somo_file.html
M us_somo/somo/doc/manual/somo/somo_grid.html
M us_somo/somo/doc/manual/somo/somo_grid_overlap.html
M us_somo/somo/doc/manual/somo/somo_hydro.html
M us_somo/somo/doc/manual/somo/somo_hydro_expert_mode.html
M us_somo/somo/doc/manual/somo/somo_hydro_zeno.html
M us_somo/somo/doc/manual/somo/somo_hydro_zeno.html_old
M us_somo/somo/doc/manual/somo/somo_mals.html
M us_somo/somo/doc/manual/somo/somo_mals_saxs.html
M us_somo/somo/doc/manual/somo/somo_misc.html
M us_somo/somo/doc/manual/somo/somo_overlap.html
M us_somo/somo/doc/manual/somo/somo_pdb_editor.html
M us_somo/somo/doc/manual/somo/somo_pdb_editor_merge.html
M us_somo/somo/doc/manual/somo/somo_pdb_parsing.html
M us_somo/somo/doc/manual/somo/somo_pdb_parsing_expert_mode.html
M us_somo/somo/doc/manual/somo/somo_pdb_visualization.html
M us_somo/somo/doc/manual/somo/somo_residue.html
M us_somo/somo/doc/manual/somo/somo_results.html
M us_somo/somo/doc/manual/somo/somo_save.html
M us_somo/somo/doc/manual/somo/somo_saxs.html
M us_somo/somo/doc/manual/somo/somo_saxs_buffer.html
M us_somo/somo/doc/manual/somo/somo_saxs_conc.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_baseline_corr.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_fit.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_linear_baselines.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_movie.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_skewedGauss.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_svd.html
M us_somo/somo/doc/manual/somo/somo_saxs_iqq_residuals.html
M us_somo/somo/doc/manual/somo/somo_saxs_load_csv.html
M us_somo/somo/doc/manual/somo/somo_saxs_mw.html
M us_somo/somo/doc/manual/somo/somo_saxs_options.html
M us_somo/somo/doc/manual/somo/somo_saxs_residuals.html
M us_somo/somo/doc/manual/somo/somo_show_hydro.html
M us_somo/somo/doc/manual/somo/somo_uv_vis.html
M us_somo/somo/doc/manual/somo/somo_vdw_overlap.html
M us_somo/somo/doc/manual/somo/underconstruction.html
M us_somo/somo/doc/manual/somo/uv_vis_options.html
Log Message:
-----------
Update email to use Montana addresses
Commit: adc6c23b61a16464db88203e933492a004032c4c
https://github.com/ehb54/ultrascan3/commit/adc6c23b61a16464db88203e933492a004032c4c
Author: aaron <aaron at aucsolutions.com>
Date: 2024-10-20 (Sun, 20 Oct 2024)
Changed paths:
M LICENSE.txt
M alpha/us.cpp
M doc/manual/ultrascan3.txt
M programs/us/us_de_DE.ts
Log Message:
-----------
fix accent mark
Commit: ebc3daaf9a59720faa1cf03861562a18feecd64b
https://github.com/ehb54/ultrascan3/commit/ebc3daaf9a59720faa1cf03861562a18feecd64b
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2024-10-21 (Mon, 21 Oct 2024)
Changed paths:
M programs/us_mpi_analysis/us_mpi_analysis.cpp
Log Message:
-----------
Add low_acceleration check output to us_mpi_analysis for consistency
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: ac611e47ae70fdd3471d67dae5d4e1b7d82263c3
https://github.com/ehb54/ultrascan3/commit/ac611e47ae70fdd3471d67dae5d4e1b7d82263c3
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2024-10-21 (Mon, 21 Oct 2024)
Changed paths:
M programs/us_mpi_analysis/us_mpi_analysis.cpp
Log Message:
-----------
Fix accessing simparams for dset
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 014528cf370e7904c6ae1ce11e555aebf393357a
https://github.com/ehb54/ultrascan3/commit/014528cf370e7904c6ae1ce11e555aebf393357a
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2024-10-21 (Mon, 21 Oct 2024)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Add safe directory command to analyze-mpi action workflow
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: df2ef24ca3ea2f1bc07fdc2532d1a92a328f9739
https://github.com/ehb54/ultrascan3/commit/df2ef24ca3ea2f1bc07fdc2532d1a92a328f9739
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-10-22 (Tue, 22 Oct 2024)
Changed paths:
M LICENSE.txt
M alpha/us.cpp
M doc/manual/advanced_config.body
M doc/manual/convert.body
M doc/manual/ultrascan3.txt
M programs/us/us_de_DE.ts
M us_somo/attic/INSTALL
M us_somo/develop/src/us_hydrodyn_dad.cpp
M us_somo/develop/src/us_hydrodyn_mals.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc.cpp
M us_somo/develop/src/us_util.cpp
M us_somo/extra/haddock/bin_i73/mpi/runjob
M us_somo/somo/doc/manual/somo/IntegralBaselineTheory.html
M us_somo/somo/doc/manual/somo/baseline_best.html
M us_somo/somo/doc/manual/somo/copyright.html
M us_somo/somo/doc/manual/somo/cormap.html
M us_somo/somo/doc/manual/somo/dad_parameters.html
M us_somo/somo/doc/manual/somo/fractal_dimension_options.html
M us_somo/somo/doc/manual/somo/mals_options.html
M us_somo/somo/doc/manual/somo/mals_parameters.html
M us_somo/somo/doc/manual/somo/mals_saxs_options.html
M us_somo/somo/doc/manual/somo/saxs_hplc_Gaussian_theory.html
M us_somo/somo/doc/manual/somo/saxs_hplc_ciq.html
M us_somo/somo/doc/manual/somo/saxs_hplc_conc_csv_frames.html
M us_somo/somo/doc/manual/somo/saxs_hplc_dctr.html
M us_somo/somo/doc/manual/somo/saxs_hplc_nth.html
M us_somo/somo/doc/manual/somo/saxs_hplc_options.html
M us_somo/somo/doc/manual/somo/saxs_hplc_p3d.html
M us_somo/somo/doc/manual/somo/saxs_hplc_parameters.html
M us_somo/somo/doc/manual/somo/saxs_ift.html
M us_somo/somo/doc/manual/somo/somo.html
M us_somo/somo/doc/manual/somo/somo_BEST_Analysis.html
M us_somo/somo/doc/manual/somo/somo_BEST_setup.html
M us_somo/somo/doc/manual/somo/somo_Dammin_Dammif_bead_model_properties.html
M us_somo/somo/doc/manual/somo/somo_SAXS_search.html
M us_somo/somo/doc/manual/somo/somo_add_saxs.html
M us_somo/somo/doc/manual/somo/somo_addatom.html
M us_somo/somo/doc/manual/somo/somo_addhybridization.html
M us_somo/somo/doc/manual/somo/somo_advanced_config.html
M us_somo/somo/doc/manual/somo/somo_anaflex_options.html
M us_somo/somo/doc/manual/somo/somo_asa.html
M us_somo/somo/doc/manual/somo/somo_batch.html
M us_somo/somo/doc/manual/somo/somo_bd_options.html
M us_somo/somo/doc/manual/somo/somo_bead_model_format.html
M us_somo/somo/doc/manual/somo/somo_bead_output.html
M us_somo/somo/doc/manual/somo/somo_cluster.html
M us_somo/somo/doc/manual/somo/somo_cluster_advanced_options.html
M us_somo/somo/doc/manual/somo/somo_cluster_config.html
M us_somo/somo/doc/manual/somo/somo_cluster_dmd.html
M us_somo/somo/doc/manual/somo/somo_cluster_results.html
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M us_somo/somo/doc/manual/somo/somo_comparative.html
M us_somo/somo/doc/manual/somo/somo_dammin_opts.html
M us_somo/somo/doc/manual/somo/somo_dmd_options.html
M us_somo/somo/doc/manual/somo/somo_file.html
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M us_somo/somo/doc/manual/somo/somo_mals_saxs.html
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M us_somo/somo/doc/manual/somo/somo_overlap.html
M us_somo/somo/doc/manual/somo/somo_pdb_editor.html
M us_somo/somo/doc/manual/somo/somo_pdb_editor_merge.html
M us_somo/somo/doc/manual/somo/somo_pdb_parsing.html
M us_somo/somo/doc/manual/somo/somo_pdb_parsing_expert_mode.html
M us_somo/somo/doc/manual/somo/somo_pdb_visualization.html
M us_somo/somo/doc/manual/somo/somo_residue.html
M us_somo/somo/doc/manual/somo/somo_results.html
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M us_somo/somo/doc/manual/somo/somo_saxs.html
M us_somo/somo/doc/manual/somo/somo_saxs_buffer.html
M us_somo/somo/doc/manual/somo/somo_saxs_conc.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_baseline_corr.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_fit.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_linear_baselines.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_movie.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_skewedGauss.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_svd.html
M us_somo/somo/doc/manual/somo/somo_saxs_iqq_residuals.html
M us_somo/somo/doc/manual/somo/somo_saxs_load_csv.html
M us_somo/somo/doc/manual/somo/somo_saxs_mw.html
M us_somo/somo/doc/manual/somo/somo_saxs_options.html
M us_somo/somo/doc/manual/somo/somo_saxs_residuals.html
M us_somo/somo/doc/manual/somo/somo_show_hydro.html
M us_somo/somo/doc/manual/somo/somo_uv_vis.html
M us_somo/somo/doc/manual/somo/somo_vdw_overlap.html
M us_somo/somo/doc/manual/somo/underconstruction.html
M us_somo/somo/doc/manual/somo/uv_vis_options.html
Log Message:
-----------
Merge pull request #144 from ehb54/370-request-email-address-maintenance
370 request email address maintenance
Commit: 9f0b603fa30ebb9cf271d3101c9f7b50748cf732
https://github.com/ehb54/ultrascan3/commit/9f0b603fa30ebb9cf271d3101c9f7b50748cf732
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-22 (Tue, 22 Oct 2024)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP : Reporting Averages over Replicates for all Optics types -- attemp to resolve, will be tested on Workshop DB for specifically created combo-run out of uploaded form disk data...
Commit: 6cc8140ed633c1d27297ab96b1209271952d552d
https://github.com/ehb54/ultrascan3/commit/6cc8140ed633c1d27297ab96b1209271952d552d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-22 (Tue, 22 Oct 2024)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[fix 1 for -- ] GMP : Reporting Averages over Replicates for all Optics types -- attemp to resolve, will be tested on Workshop DB for specifically created combo-run out of uploaded form disk data...
Commit: b42bbe513209718e104b23a6c8e1f2f7389282c6
https://github.com/ehb54/ultrascan3/commit/b42bbe513209718e104b23a6c8e1f2f7389282c6
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-22 (Tue, 22 Oct 2024)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[fix 2 plu debugs for -- ] GMP : Reporting Averages over Replicates for all Optics types -- attemp to resolve, will be tested on Workshop DB for specifically created combo-run out of uploaded form disk data...
Commit: 24e7c8d470c9d64c61ff7a148f446acaeba14ea6
https://github.com/ehb54/ultrascan3/commit/24e7c8d470c9d64c61ff7a148f446acaeba14ea6
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-22 (Tue, 22 Oct 2024)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[fix 3 plu debugs for -- ] GMP : Reporting Averages over Replicates for all Optics types -- attemp to resolve, will be tested on Workshop DB for specifically created combo-run out of uploaded form disk data...
Commit: 9c0235f68ee752512d20ff33cd258aa86510c9f3
https://github.com/ehb54/ultrascan3/commit/9c0235f68ee752512d20ff33cd258aa86510c9f3
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-22 (Tue, 22 Oct 2024)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[fix 4a plu debugs for -- ] GMP : Reporting Averages over Replicates for all Optics types -- attemp to resolve, will be tested on Workshop DB for specifically created combo-run out of uploaded form disk data...
Commit: 6c7123e45d24aa48424153b288f2e4c6bf7914a0
https://github.com/ehb54/ultrascan3/commit/6c7123e45d24aa48424153b288f2e4c6bf7914a0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-29 (Tue, 29 Oct 2024)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP : C(s) ranges for indiv. distribs.....
Commit: f72d501c33cb3502d44bc4d58518aa78af5a5c25
https://github.com/ehb54/ultrascan3/commit/f72d501c33cb3502d44bc4d58518aa78af5a5c25
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-29 (Tue, 29 Oct 2024)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP : C(s) ranges for indiv. distribs; passed Aprofile params for min/max into ddist plots & to GMP report.....
Commit: 3d1aaeed4f8154445cacb7580a134626c3b1e157
https://github.com/ehb54/ultrascan3/commit/3d1aaeed4f8154445cacb7580a134626c3b1e157
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2024-10-31 (Thu, 31 Oct 2024)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
Merge pull request #146 from ehb54/alexey-dev-issue376
Alexey dev issue376: for UTC times everywhere, tested
Commit: fc29374da386228c46589233ac32b61de036e65d
https://github.com/ehb54/ultrascan3/commit/fc29374da386228c46589233ac32b61de036e65d
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2024-10-31 (Thu, 31 Oct 2024)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
Merge pull request #147 from ehb54/alexey-dev-issue359
Alexey dev issue359: Replicates Average over IP triples, and individual discrete distros
Commit: 3fd930c4bcb884dc6edb01065052a79f82fbc4d9
https://github.com/ehb54/ultrascan3/commit/3fd930c4bcb884dc6edb01065052a79f82fbc4d9
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2024-10-31 (Thu, 31 Oct 2024)
Changed paths:
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M utils/us_archive.cpp
M utils/us_archive.h
Log Message:
-----------
Merge pull request #143 from samo38/us_issue_375
Us issue 375
Commit: 6e2a7f73eb750559204f9c0c79cd5f611d271d15
https://github.com/ehb54/ultrascan3/commit/6e2a7f73eb750559204f9c0c79cd5f611d271d15
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2024-10-31 (Thu, 31 Oct 2024)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
Merge pull request #148 from ehb54/alexey-dev-issue368
Alexey dev issue368: C(s) individual plots, correctly passed limits
Commit: 5ae09132eade1954e16cf1c23941f19a53586f48
https://github.com/ehb54/ultrascan3/commit/5ae09132eade1954e16cf1c23941f19a53586f48
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-31 (Thu, 31 Oct 2024)
Changed paths:
M .github/workflows/codeql-analysis.yml
M LICENSE.txt
M admin/codeql/docker/docker/Dockerfile
M admin/codeql/docker/dockerdev/Dockerfile
M admin/release/centos7/Dockerfile
M admin/release/redhat/Dockerfile
M admin/release/ubuntu/Dockerfile
M alpha/us.cpp
M doc/manual/advanced_config.body
M doc/manual/convert.body
M doc/manual/ultrascan3.txt
M gui/us_license.cpp
M gui/us_license.h
M library.pri
M programs/us/us_de_DE.ts
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_edit/us_edit.cpp
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M us_somo/attic/INSTALL
M us_somo/develop/src/us_hydrodyn_dad.cpp
M us_somo/develop/src/us_hydrodyn_mals.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc.cpp
M us_somo/develop/src/us_util.cpp
M us_somo/extra/haddock/bin_i73/mpi/runjob
M us_somo/somo/doc/manual/somo/IntegralBaselineTheory.html
M us_somo/somo/doc/manual/somo/baseline_best.html
M us_somo/somo/doc/manual/somo/copyright.html
M us_somo/somo/doc/manual/somo/cormap.html
M us_somo/somo/doc/manual/somo/dad_parameters.html
M us_somo/somo/doc/manual/somo/fractal_dimension_options.html
M us_somo/somo/doc/manual/somo/mals_options.html
M us_somo/somo/doc/manual/somo/mals_parameters.html
M us_somo/somo/doc/manual/somo/mals_saxs_options.html
M us_somo/somo/doc/manual/somo/saxs_hplc_Gaussian_theory.html
M us_somo/somo/doc/manual/somo/saxs_hplc_ciq.html
M us_somo/somo/doc/manual/somo/saxs_hplc_conc_csv_frames.html
M us_somo/somo/doc/manual/somo/saxs_hplc_dctr.html
M us_somo/somo/doc/manual/somo/saxs_hplc_nth.html
M us_somo/somo/doc/manual/somo/saxs_hplc_options.html
M us_somo/somo/doc/manual/somo/saxs_hplc_p3d.html
M us_somo/somo/doc/manual/somo/saxs_hplc_parameters.html
M us_somo/somo/doc/manual/somo/saxs_ift.html
M us_somo/somo/doc/manual/somo/somo.html
M us_somo/somo/doc/manual/somo/somo_BEST_Analysis.html
M us_somo/somo/doc/manual/somo/somo_BEST_setup.html
M us_somo/somo/doc/manual/somo/somo_Dammin_Dammif_bead_model_properties.html
M us_somo/somo/doc/manual/somo/somo_SAXS_search.html
M us_somo/somo/doc/manual/somo/somo_add_saxs.html
M us_somo/somo/doc/manual/somo/somo_addatom.html
M us_somo/somo/doc/manual/somo/somo_addhybridization.html
M us_somo/somo/doc/manual/somo/somo_advanced_config.html
M us_somo/somo/doc/manual/somo/somo_anaflex_options.html
M us_somo/somo/doc/manual/somo/somo_asa.html
M us_somo/somo/doc/manual/somo/somo_batch.html
M us_somo/somo/doc/manual/somo/somo_bd_options.html
M us_somo/somo/doc/manual/somo/somo_bead_model_format.html
M us_somo/somo/doc/manual/somo/somo_bead_output.html
M us_somo/somo/doc/manual/somo/somo_cluster.html
M us_somo/somo/doc/manual/somo/somo_cluster_advanced_options.html
M us_somo/somo/doc/manual/somo/somo_cluster_config.html
M us_somo/somo/doc/manual/somo/somo_cluster_dmd.html
M us_somo/somo/doc/manual/somo/somo_cluster_results.html
M us_somo/somo/doc/manual/somo/somo_cluster_status.html
M us_somo/somo/doc/manual/somo/somo_cluster_submit.html
M us_somo/somo/doc/manual/somo/somo_comparative.html
M us_somo/somo/doc/manual/somo/somo_dammin_opts.html
M us_somo/somo/doc/manual/somo/somo_dmd_options.html
M us_somo/somo/doc/manual/somo/somo_file.html
M us_somo/somo/doc/manual/somo/somo_grid.html
M us_somo/somo/doc/manual/somo/somo_grid_overlap.html
M us_somo/somo/doc/manual/somo/somo_hydro.html
M us_somo/somo/doc/manual/somo/somo_hydro_expert_mode.html
M us_somo/somo/doc/manual/somo/somo_hydro_zeno.html
M us_somo/somo/doc/manual/somo/somo_hydro_zeno.html_old
M us_somo/somo/doc/manual/somo/somo_mals.html
M us_somo/somo/doc/manual/somo/somo_mals_saxs.html
M us_somo/somo/doc/manual/somo/somo_misc.html
M us_somo/somo/doc/manual/somo/somo_overlap.html
M us_somo/somo/doc/manual/somo/somo_pdb_editor.html
M us_somo/somo/doc/manual/somo/somo_pdb_editor_merge.html
M us_somo/somo/doc/manual/somo/somo_pdb_parsing.html
M us_somo/somo/doc/manual/somo/somo_pdb_parsing_expert_mode.html
M us_somo/somo/doc/manual/somo/somo_pdb_visualization.html
M us_somo/somo/doc/manual/somo/somo_residue.html
M us_somo/somo/doc/manual/somo/somo_results.html
M us_somo/somo/doc/manual/somo/somo_save.html
M us_somo/somo/doc/manual/somo/somo_saxs.html
M us_somo/somo/doc/manual/somo/somo_saxs_buffer.html
M us_somo/somo/doc/manual/somo/somo_saxs_conc.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_baseline_corr.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_fit.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_linear_baselines.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_movie.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_skewedGauss.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_svd.html
M us_somo/somo/doc/manual/somo/somo_saxs_iqq_residuals.html
M us_somo/somo/doc/manual/somo/somo_saxs_load_csv.html
M us_somo/somo/doc/manual/somo/somo_saxs_mw.html
M us_somo/somo/doc/manual/somo/somo_saxs_options.html
M us_somo/somo/doc/manual/somo/somo_saxs_residuals.html
M us_somo/somo/doc/manual/somo/somo_show_hydro.html
M us_somo/somo/doc/manual/somo/somo_uv_vis.html
M us_somo/somo/doc/manual/somo/somo_vdw_overlap.html
M us_somo/somo/doc/manual/somo/underconstruction.html
M us_somo/somo/doc/manual/somo/uv_vis_options.html
M utils/libus_utils.pro
A utils/us_archive.cpp
A utils/us_archive.h
Log Message:
-----------
Merge pull request #149 from ehb54/master
bring branch alexey-dev-issue367 (data-from-disk integration) to the latest master state
Commit: 2aff6a0cd8dcd6119f8773c382606e1575dfe5e0
https://github.com/ehb54/ultrascan3/commit/2aff6a0cd8dcd6119f8773c382606e1575dfe5e0
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2024-10-31 (Thu, 31 Oct 2024)
Changed paths:
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
Merge pull request #150 from ehb54/alexey-dev-reverse-liveupdate
GMP, R&D: 2. LIVE UPDATE : reverse early-stage live update to the earlier (stable) behavior...
Commit: 53b56c85fb0fb5285255581640cc90e427338ddf
https://github.com/ehb54/ultrascan3/commit/53b56c85fb0fb5285255581640cc90e427338ddf
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-10-31 (Thu, 31 Oct 2024)
Changed paths:
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
Merge pull request #151 from ehb54/master
pull the rest of master into alexey-dev-issue367
Commit: 9c415f589b74b0c8ec396a473b85996c0b12d9ec
https://github.com/ehb54/ultrascan3/commit/9c415f589b74b0c8ec396a473b85996c0b12d9ec
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-11-04 (Mon, 04 Nov 2024)
Changed paths:
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M utils/us_run_protocol.h
Log Message:
-----------
GMP : Data from local Disk [.auc] -- init. preparations for processing also 'RA' data type; initital import succeeded...
Commit: bf9d824bc796ead5b220a6b5fd9496f42504084f
https://github.com/ehb54/ultrascan3/commit/bf9d824bc796ead5b220a6b5fd9496f42504084f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-11-04 (Mon, 04 Nov 2024)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- skip ref.scan in 3. IMPORT for RA data...
Commit: f3a9f375aedef1a80b3ab0806c9a641b36ba7bc0
https://github.com/ehb54/ultrascan3/commit/f3a9f375aedef1a80b3ab0806c9a641b36ba7bc0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-11-04 (Mon, 04 Nov 2024)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP : Data from local Disk [.auc] -- in GMP report, n/a for runID, source - dataDisk...
Commit: eb2705621b5bc78a0d676e56b0cb1d9714cfb449
https://github.com/ehb54/ultrascan3/commit/eb2705621b5bc78a0d676e56b0cb1d9714cfb449
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-11-04 (Mon, 04 Nov 2024)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP : Data from local Disk [.auc] -- if data were identified as RA, and user tries to uncheck 'Absorbance data' checkbox, issue warning and re-check...
Commit: e837b7ba63fbd095b2a74c45ca9182053e48a876
https://github.com/ehb54/ultrascan3/commit/e837b7ba63fbd095b2a74c45ca9182053e48a876
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-11-06 (Wed, 06 Nov 2024)
Changed paths:
M gui/us_run_details2.cpp
M gui/us_run_details2.h
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP : Data from local Disk [.auc] -- upon upload, read rotor speed, total time, interval between scans (per data-type) etc. & populate into protcol and gui...
Commit: 8c9ad51e19d5aa875c54a2d908643f97ccc14829
https://github.com/ehb54/ultrascan3/commit/8c9ad51e19d5aa875c54a2d908643f97ccc14829
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-11-06 (Wed, 06 Nov 2024)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP : Data from local Disk [.auc] -- upon dataDisk upload, inform user also of inferred rotor speed, duration, #scans per dataType...
Commit: e092aa0936adf8ec47d059f0e1d9fea411459d1e
https://github.com/ehb54/ultrascan3/commit/e092aa0936adf8ec47d059f0e1d9fea411459d1e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-11-06 (Wed, 06 Nov 2024)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_edit/us_edit.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- bugs fixed for: (1) generate User Interactions for RA type {IMPORT, EDIT, ANALYSIS}; (2) correct handling of the case when only 1 channel is analysed...
Commit: a1ed96eb10b09e90a677b993b0d015cc1130e83e
https://github.com/ehb54/ultrascan3/commit/a1ed96eb10b09e90a677b993b0d015cc1130e83e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-11-08 (Fri, 08 Nov 2024)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- bugs fixed for: (1) audit trail info for RA data from disk; (2) determine abs. type automatically...
Commit: 5957fc1d918eaa227ce66e56825c2032ad1dd07e
https://github.com/ehb54/ultrascan3/commit/5957fc1d918eaa227ce66e56825c2032ad1dd07e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-11-08 (Fri, 08 Nov 2024)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- set 'N/A' for ref.scan determination in audit trail & report for RA data-from-disk type...
Commit: 56e22ba731537a2b7c1328c14503c8ff160accc0
https://github.com/ehb54/ultrascan3/commit/56e22ba731537a2b7c1328c14503c8ff160accc0
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2024-11-11 (Mon, 11 Nov 2024)
Changed paths:
M gui/us_predict1.cpp
M gui/us_predict1.h
Log Message:
-----------
Add apparent s and D as column, properly label columns as apparent and standardized s and D
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: b0cf8f1efbd20ca56fe6981d6cd49855ace930f5
https://github.com/ehb54/ultrascan3/commit/b0cf8f1efbd20ca56fe6981d6cd49855ace930f5
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2024-11-11 (Mon, 11 Nov 2024)
Changed paths:
M .github/workflows/codeql-analysis.yml
M programs/us_2dsa/us_2dsa.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_convert/us_convert.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M utils/us_simparms.cpp
Log Message:
-----------
Merge pull request #138 from ehb54/Lukas-low-speed-convert
low acceleration rate conversion
Commit: 1418c87b23f91734b7a3e4676257f14a1457e15d
https://github.com/ehb54/ultrascan3/commit/1418c87b23f91734b7a3e4676257f14a1457e15d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-11-12 (Tue, 12 Nov 2024)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- prevent wrong behavoir when directory does not contains .auc data...
Commit: c3461c1abef0d1f6bd573ca6ff040a5225decc98
https://github.com/ehb54/ultrascan3/commit/c3461c1abef0d1f6bd573ca6ff040a5225decc98
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-11-13 (Wed, 13 Nov 2024)
Changed paths:
M programs/us_manage_data/us_data_tree.cpp
M programs/us_manage_data/us_data_tree.h
Log Message:
-----------
GMP : Manage Data -- prevent data {edit,models,noise} deletion if they were generated/required by GMP framework...
Commit: 4674c49901490a2149b2c2146aec046393b0b688
https://github.com/ehb54/ultrascan3/commit/4674c49901490a2149b2c2146aec046393b0b688
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-11-15 (Fri, 15 Nov 2024)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
us_convert_gui.cpp :: take out referecne data for each channel separately when the wavelengths differ even if each channel has only one triple
Commit: 419c03d7424b0157e6bbb28aa253cf90af611ad0
https://github.com/ehb54/ultrascan3/commit/419c03d7424b0157e6bbb28aa253cf90af611ad0
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2024-11-20 (Wed, 20 Nov 2024)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
Merge pull request #153 from samo38/issue_309
RIProfile issue with multi-wavelength runs
Commit: cd9f7a39b2fbeca119107837e0e5aca4aba85c73
https://github.com/ehb54/ultrascan3/commit/cd9f7a39b2fbeca119107837e0e5aca4aba85c73
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2024-11-20 (Wed, 20 Nov 2024)
Changed paths:
M gui/us_predict1.cpp
M gui/us_predict1.h
Log Message:
-----------
Merge pull request #152 from ehb54/us_predict1_bugfix
Improve us_predict1 by providing apparent and standardized s and D
Commit: 93316649875f323b60d0a5c034fa42f472ab0dec
https://github.com/ehb54/ultrascan3/commit/93316649875f323b60d0a5c034fa42f472ab0dec
Author: ehb54 <brookes at uthscsa.edu>
Date: 2024-11-21 (Thu, 21 Nov 2024)
Changed paths:
A admin/us_branch/us_branch.php
A admin/us_branch/utility.php
Log Message:
-----------
us_branch initlal commit
Commit: 28db369ade10d36ff248ced336037abb95650274
https://github.com/ehb54/ultrascan3/commit/28db369ade10d36ff248ced336037abb95650274
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-11-21 (Thu, 21 Nov 2024)
Changed paths:
A admin/us_branch/README.md
Log Message:
-----------
Create README.md
Commit: 51d4e32f29d0bc9acf1ad7fd12b45021c72e8693
https://github.com/ehb54/ultrascan3/commit/51d4e32f29d0bc9acf1ad7fd12b45021c72e8693
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2024-11-21 (Thu, 21 Nov 2024)
Changed paths:
A admin/us_branch/README.md
A admin/us_branch/us_branch.php
A admin/us_branch/utility.php
Log Message:
-----------
Merge pull request #154 from ehb54/ehb54-issue-296
Ehb54 issue 296 - us_branch.php utility program
Commit: 7e7d1d0eec6365a62504dc752e14f9e4aae8072d
https://github.com/ehb54/ultrascan3/commit/7e7d1d0eec6365a62504dc752e14f9e4aae8072d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-11-21 (Thu, 21 Nov 2024)
Changed paths:
M programs/us_manage_data/us_data_tree.cpp
Log Message:
-----------
GMP : Manage Data -- prevent data {edit,models,noise} deletion if they were generated/required by GMP framework -- including 2DSA, -FM models & associated noises (even though they are not required by GMP report)...
Commit: dee661fe1c3202eb4e1e685b3d30d07d6de3c863
https://github.com/ehb54/ultrascan3/commit/dee661fe1c3202eb4e1e685b3d30d07d6de3c863
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2024-11-21 (Thu, 21 Nov 2024)
Changed paths:
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M utils/us_archive.cpp
M utils/us_archive.h
Log Message:
-----------
Merge pull request #155 from ehb54/samo38-issue-375
Samo38 issue 375
Commit: c610cf5b6ca9788984d2c6e52c5274d2bf57bfc7
https://github.com/ehb54/ultrascan3/commit/c610cf5b6ca9788984d2c6e52c5274d2bf57bfc7
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-11-21 (Thu, 21 Nov 2024)
Changed paths:
A admin/us_branch/README.md
A admin/us_branch/us_branch.php
A admin/us_branch/utility.php
M gui/us_predict1.cpp
M gui/us_predict1.h
M programs/us_convert/us_convert_gui.cpp
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M utils/us_archive.cpp
M utils/us_archive.h
Log Message:
-----------
Merge pull request #156 from ehb54/master
merge master to 373
Commit: 491f1031dc867efeb078309428168d255195a134
https://github.com/ehb54/ultrascan3/commit/491f1031dc867efeb078309428168d255195a134
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2024-11-22 (Fri, 22 Nov 2024)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
Ensure consistent simpoints default of 200 in all programs matching lims default
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: a60fcd2bb823d492aaea28b47b2cfc260f66d95f
https://github.com/ehb54/ultrascan3/commit/a60fcd2bb823d492aaea28b47b2cfc260f66d95f
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2024-11-22 (Fri, 22 Nov 2024)
Changed paths:
M programs/us_manage_data/us_data_tree.cpp
M programs/us_manage_data/us_data_tree.h
Log Message:
-----------
Merge pull request #157 from ehb54/alexey-dev-issue373
Alexey dev issue373
Commit: 808f7a7fe62540a2e678b22332b9817dd8820403
https://github.com/ehb54/ultrascan3/commit/808f7a7fe62540a2e678b22332b9817dd8820403
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-11-22 (Fri, 22 Nov 2024)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP : Data from local Disk [.auc] -- allow Rotor change; ask for correct rotor while checking data-from-disk option; enforce check for rotor-data consistency (4-hole, not more than 4th channel for data); allow to upload simulated data into A-channel ...
Commit: 522bfd8e902fc1024fb7ea7eba1e7e39e02d645d
https://github.com/ehb54/ultrascan3/commit/522bfd8e902fc1024fb7ea7eba1e7e39e02d645d
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-11-28 (Thu, 28 Nov 2024)
Changed paths:
M programs/us_manage_data/us_data_tree.cpp
M programs/us_manage_data/us_data_tree.h
Log Message:
-----------
Merge pull request #159 from ehb54/master
merge master into lukas-bug-388
Commit: bcc3770dbb0fedcb4f35933b40441d1a2df960fd
https://github.com/ehb54/ultrascan3/commit/bcc3770dbb0fedcb4f35933b40441d1a2df960fd
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-12-01 (Sun, 01 Dec 2024)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_get_run.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- minor bug and debug stats...
Commit: e95a6d93273e6511bebe28af72c76887a6df3434
https://github.com/ehb54/ultrascan3/commit/e95a6d93273e6511bebe28af72c76887a6df3434
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-12-03 (Tue, 03 Dec 2024)
Changed paths:
M .github/workflows/codeql-analysis.yml
A admin/us_branch/README.md
A admin/us_branch/us_branch.php
A admin/us_branch/utility.php
M gui/us_predict1.cpp
M gui/us_predict1.h
M programs/us_2dsa/us_2dsa.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_convert/us_convert.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_manage_data/us_data_tree.cpp
M programs/us_manage_data/us_data_tree.h
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M utils/us_archive.cpp
M utils/us_archive.h
M utils/us_simparms.cpp
Log Message:
-----------
Merge pull request #160 from ehb54/master
Bring branch alexey-dev-issue367 to the current master state for testing
Commit: bc5579bd6fd1765c01c2b9b9433c91ec6ae262c1
https://github.com/ehb54/ultrascan3/commit/bc5579bd6fd1765c01c2b9b9433c91ec6ae262c1
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2024-12-04 (Wed, 04 Dec 2024)
Changed paths:
M utils/us_simparms.cpp
Log Message:
-----------
Ensure more accurate speedsteps for complex data
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 64224c4de16c80ac4b4120a62bc0607708343240
https://github.com/ehb54/ultrascan3/commit/64224c4de16c80ac4b4120a62bc0607708343240
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2024-12-04 (Wed, 04 Dec 2024)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
Prevent race condition
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: a8f4a9fbe6d36ccecd1d611fbd1ddd23cd3ac68e
https://github.com/ehb54/ultrascan3/commit/a8f4a9fbe6d36ccecd1d611fbd1ddd23cd3ac68e
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-12-05 (Thu, 05 Dec 2024)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
Merge pull request #158 from ehb54/lukas-bug-388
Ensure simpoints default of 200 in all programs like lims
Commit: 6d96d884446e749623476667e39c01c1d43d17c5
https://github.com/ehb54/ultrascan3/commit/6d96d884446e749623476667e39c01c1d43d17c5
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-12-05 (Thu, 05 Dec 2024)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- a bug fixed for the proper filename: do not add '-dataDISK-XXX' for conventional GMP runs...
Commit: 009eb26c7380e89b580c399f32eec75795b73250
https://github.com/ehb54/ultrascan3/commit/009eb26c7380e89b580c399f32eec75795b73250
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-12-07 (Sat, 07 Dec 2024)
Changed paths:
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.h
M utils/us_xpn_data.cpp
M utils/us_xpn_data.h
Log Message:
-----------
GMP : Empty Timestamp, Instrument not reset -- abort the GMP run at the end of LIV_UPDATE, inform user of violation of the GMP compliance...
Commit: c3be3cd237b3b73289e74473733b9cbfb490f2d6
https://github.com/ehb54/ultrascan3/commit/c3be3cd237b3b73289e74473733b9cbfb490f2d6
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2024-12-08 (Sun, 08 Dec 2024)
Changed paths:
M gui/us_run_details2.cpp
M gui/us_run_details2.h
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.h
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_convert/us_get_run.cpp
M programs/us_edit/us_edit.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment.pro
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.h
M utils/us_run_protocol.cpp
M utils/us_run_protocol.h
M utils/us_xpn_data.cpp
M utils/us_xpn_data.h
Log Message:
-----------
Merge pull request #161 from ehb54/alexey-dev-issue367
Alexey dev issue367: Data-form-disk (RI/RA/S/IP) integration
Commit: 6182249ce5be8f9cba9d38222c045f8f1350c279
https://github.com/ehb54/ultrascan3/commit/6182249ce5be8f9cba9d38222c045f8f1350c279
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-12-08 (Sun, 08 Dec 2024)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
Log Message:
-----------
GMP : Data from local Disk [.auc] -- fix issues in 4. EDIT stage for Simulated Data...
Commit: 7118b017d57255862416e22fa1a619ce21abbac7
https://github.com/ehb54/ultrascan3/commit/7118b017d57255862416e22fa1a619ce21abbac7
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us_csv_loader: add a static function to read a csv file
Commit: 896a9d27948250d42c5b1aef3f6e9ad716411561
https://github.com/ehb54/ultrascan3/commit/896a9d27948250d42c5b1aef3f6e9ad716411561
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M programs/us_spectrum/us_spectrum.cpp
Log Message:
-----------
us_spectrum: load every columns of a csv file for basis and show the header in the list instead of the file name. Show the header for the target spectrum. Show file name by hovering over each item.
Commit: e026e172b356232f7bf2a8e41ce96ea4b73635d1
https://github.com/ehb54/ultrascan3/commit/e026e172b356232f7bf2a8e41ce96ea4b73635d1
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us_csv_loader: finished the static reading function
Commit: 5aad47d957ceb3b5060401ba5c72990f0bcf61c5
https://github.com/ehb54/ultrascan3/commit/5aad47d957ceb3b5060401ba5c72990f0bcf61c5
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us_csv_loader: move the static function to read a csv file into the CSV_Data class as a public function
Commit: 4494e719ffccb06693c6d51d369d9c8b52ffce11
https://github.com/ehb54/ultrascan3/commit/4494e719ffccb06693c6d51d369d9c8b52ffce11
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us_csv_loader:CSV_Data: add a public function to write the data to a file
Commit: 51ed4e3025b4727979689b97710cbc4dcd7234bf
https://github.com/ehb54/ultrascan3/commit/51ed4e3025b4727979689b97710cbc4dcd7234bf
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us_csv_loader: set table view to interactive. fixed the indentations.
Commit: a10374685883383d91ad59dcd255ef7041ddc48f
https://github.com/ehb54/ultrascan3/commit/a10374685883383d91ad59dcd255ef7041ddc48f
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us_csv_loader: separate the row and column deletion signals. add a new function to check the header independently.
Commit: 495d2088ec4dbe6b874b37de064b96035da8bf00
https://github.com/ehb54/ultrascan3/commit/495d2088ec4dbe6b874b37de064b96035da8bf00
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
Log Message:
-----------
us_csv_loader: get the widget always to appear in the foreground.
Commit: a1b33ff4d32966ea54fd0f3dba269d93e785442c
https://github.com/ehb54/ultrascan3/commit/a1b33ff4d32966ea54fd0f3dba269d93e785442c
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
M gui/us_extinction_gui.cpp
M gui/us_extinction_gui.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_spectrum/us_spectrum.cpp
Log Message:
-----------
CSV_Data is pulled out of the US_CSV_Loader since it stands alone and has complete methods to read and write csv files. All program calling US_CSV_Loader are fixed to be compatible with new changes.
Commit: 0ff8d802555d809785e75b52258430eb980ed9ca
https://github.com/ehb54/ultrascan3/commit/0ff8d802555d809785e75b52258430eb980ed9ca
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- [moree] fix issues in 4. EDIT stage for Simulated Data...
Commit: 56b628611537490128e5d3cdfc85acc0629dfc08
https://github.com/ehb54/ultrascan3/commit/56b628611537490128e5d3cdfc85acc0629dfc08
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
Log Message:
-----------
us_csv_loader: Center the dialog on the page at one-sixth the size of the page.
Commit: 3c2d26bf0aeef05c4eddd6f3370b94e5786faa77
https://github.com/ehb54/ultrascan3/commit/3c2d26bf0aeef05c4eddd6f3370b94e5786faa77
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M utils/libus_utils.pro
A utils/us_csv_data.cpp
A utils/us_csv_data.h
Log Message:
-----------
initialize the us_csv_data class to read and write csv files
Commit: 3a189699241d7e48d8b2c32d3fae0e2c97a4e1c0
https://github.com/ehb54/ultrascan3/commit/3a189699241d7e48d8b2c32d3fae0e2c97a4e1c0
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us_csv_loader: add us_csv_data.h to the header. Set wait cursor as loading the widget
Commit: 75a6931b19ab78223b789b93a799127b58ed396e
https://github.com/ehb54/ultrascan3/commit/75a6931b19ab78223b789b93a799127b58ed396e
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M utils/us_csv_data.cpp
Log Message:
-----------
us_csv_data: resort delimiters
Commit: a0a322329fb6ce6d16534c9b197bf5f079bb49d3
https://github.com/ehb54/ultrascan3/commit/a0a322329fb6ce6d16534c9b197bf5f079bb49d3
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M programs/us_spectrum/us_spectrum.cpp
Log Message:
-----------
us_spectrum: replace deprecated qsort with std:sort function, sprintf with tr function, correct std::minmax_element , fill cb_angle_one list correctly.
Commit: 4b07882dc2a7ecb8b270d1eec242292aadaa46c3
https://github.com/ehb54/ultrascan3/commit/4b07882dc2a7ecb8b270d1eec242292aadaa46c3
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-12-09 (Mon, 09 Dec 2024)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP : Data from local Disk [.auc] -- major fixes in 6. REPORTIN for correct processing of the 'S' data ...
Commit: 86d8de6fa7de2c45aa2b37641398029f374bfb60
https://github.com/ehb54/ultrascan3/commit/86d8de6fa7de2c45aa2b37641398029f374bfb60
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-10 (Tue, 10 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
Log Message:
-----------
us_csv_loade: trim every line then add to the list of lines if it is not empty.
Commit: 5f0bd18cae904153b9377cfcb040f233989d8422
https://github.com/ehb54/ultrascan3/commit/5f0bd18cae904153b9377cfcb040f233989d8422
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-10 (Tue, 10 Dec 2024)
Changed paths:
M utils/us_csv_data.cpp
Log Message:
-----------
us_csv_data: trim lines before parsing. make a header for files that doesn't have one.
Commit: 868c8e1c19c4e1703f0d9b78145617d3771f2b37
https://github.com/ehb54/ultrascan3/commit/868c8e1c19c4e1703f0d9b78145617d3771f2b37
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-10 (Tue, 10 Dec 2024)
Changed paths:
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
Log Message:
-----------
us_spectrum: rename wp.filenameBasis to header in the WavelengthProfile class. Complete writing the csv and dat files
Commit: 8e335b5a7d5e80d7a2f0172d7fa96b43ccca72ed
https://github.com/ehb54/ultrascan3/commit/8e335b5a7d5e80d7a2f0172d7fa96b43ccca72ed
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-10 (Tue, 10 Dec 2024)
Changed paths:
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
Log Message:
-----------
us_spectrum: add the residual data to the csv file
Commit: 961f0fcb99bb8327b1948c1469808898e05d398c
https://github.com/ehb54/ultrascan3/commit/961f0fcb99bb8327b1948c1469808898e05d398c
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-10 (Tue, 10 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
M gui/us_extinction_gui.cpp
M gui/us_extinction_gui.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_spectrum/us_spectrum.cpp
Log Message:
-----------
remove the CSV_Data class from the CSV_Loader and replace with US_CSV_Data from utils and correct everywhere that has used it including: us_extinction, us_mwl_species_fit, us_pseudo_absorbance, and us_spectrum
Commit: fb38e256fbe1cff7ad3e5533524333f47d82febe
https://github.com/ehb54/ultrascan3/commit/fb38e256fbe1cff7ad3e5533524333f47d82febe
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-10 (Tue, 10 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
M utils/us_csv_data.cpp
M utils/us_csv_data.h
Log Message:
-----------
us_csv_loader: replace the csv_write function with the built-in function of the US_CSV_Data class.
Commit: c9998c0d1e56e6ee742c9deb067c85c132b5ec9c
https://github.com/ehb54/ultrascan3/commit/c9998c0d1e56e6ee742c9deb067c85c132b5ec9c
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-11 (Wed, 11 Dec 2024)
Changed paths:
M programs/us_spectrum/us_spectrum.cpp
Log Message:
-----------
us_spectrum: correst filters of the file dialogs
Commit: 42911e1b0d3272e8e6a42bb2d1a68e309c3617d4
https://github.com/ehb54/ultrascan3/commit/42911e1b0d3272e8e6a42bb2d1a68e309c3617d4
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-11 (Wed, 11 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
us_csv_loader: replaced the variable reference with pointer in the make_csv_data function. removed variable names in the header file
Commit: 7403f5fc7fb5f0c9577df25a794c11b632fd0030
https://github.com/ehb54/ultrascan3/commit/7403f5fc7fb5f0c9577df25a794c11b632fd0030
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2024-12-11 (Wed, 11 Dec 2024)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
M gui/us_extinction_gui.cpp
M gui/us_extinction_gui.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
M utils/libus_utils.pro
A utils/us_csv_data.cpp
A utils/us_csv_data.h
Log Message:
-----------
Merge pull request #162 from samo38/ticket_us_csv_data
US_CSV_Data
Commit: e957ea29cd19afe6163821a9c5c2646ef0771345
https://github.com/ehb54/ultrascan3/commit/e957ea29cd19afe6163821a9c5c2646ef0771345
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-12-12 (Thu, 12 Dec 2024)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP : Data from local Disk [.auc] -- fixes for: (1) when S-data generated with encoded '0' wavelength - abort upload & processing, inform user; (2) possible fix for failing auto-meniscus determination at 4. EDIT for S-data by shifting meniscus search to lower (than ususal Optima-generated data) radial positions; tested on some uploade S-data ...
Commit: 7b8ba3f8020f639727b4c94294cb423e7d7cde70
https://github.com/ehb54/ultrascan3/commit/7b8ba3f8020f639727b4c94294cb423e7d7cde70
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2024-12-12 (Thu, 12 Dec 2024)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
Document change
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 644ed2f79e40cb4037b5bac99a8d386348d2eef9
https://github.com/ehb54/ultrascan3/commit/644ed2f79e40cb4037b5bac99a8d386348d2eef9
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2024-12-12 (Thu, 12 Dec 2024)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP : 6. REPORTING -- do not show Intansity comparison for models from RA|S|IP data. ...
Commit: 976658353dd3f57a4572ae16704405543c2d0875
https://github.com/ehb54/ultrascan3/commit/976658353dd3f57a4572ae16704405543c2d0875
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-12-13 (Fri, 13 Dec 2024)
Changed paths:
M programs/us_edit/us_edit.cpp
M utils/us_simparms.cpp
Log Message:
-----------
Merge pull request #163 from doluk/speedstep-timestate
Bug fixes/Enhancement us_edit/speedsteps
Commit: 9c767ad3cb32bb06ec7154c9dc229537d218618c
https://github.com/ehb54/ultrascan3/commit/9c767ad3cb32bb06ec7154c9dc229537d218618c
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-12-13 (Fri, 13 Dec 2024)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
Merge pull request #164 from ehb54/alexey-dev-issue367
Alexey dev issue367: Latest changes for Data-upload-from-disk
Commit: f6d27ed0310cc31c65e9edd836b69d5b469fb109
https://github.com/ehb54/ultrascan3/commit/f6d27ed0310cc31c65e9edd836b69d5b469fb109
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-15 (Sun, 15 Dec 2024)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
Log Message:
-----------
us_legacy_converter: update regex expression
Commit: 6d5e4dc7d8fcdc063818fd612ba7a317f321d427
https://github.com/ehb54/ultrascan3/commit/6d5e4dc7d8fcdc063818fd612ba7a317f321d427
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-16 (Mon, 16 Dec 2024)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
Log Message:
-----------
us_legacy_converter: removed run type combo, tolerance counter, and reload button
Commit: 94d9d67c4b92450eecc37a59d7e60c8635a27f9a
https://github.com/ehb54/ultrascan3/commit/94d9d67c4b92450eecc37a59d7e60c8635a27f9a
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-16 (Mon, 16 Dec 2024)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
Log Message:
-----------
us_legacy_converter: delete the tolerance function
Commit: d8344ac415cb1473af74e1706aebfc50d6cab501
https://github.com/ehb54/ultrascan3/commit/d8344ac415cb1473af74e1706aebfc50d6cab501
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-16 (Mon, 16 Dec 2024)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
Log Message:
-----------
us_legacy_converter: sort data by speed and run type
Commit: 508069163bc3457dbbbe56fd7028770cdf8fda38
https://github.com/ehb54/ultrascan3/commit/508069163bc3457dbbbe56fd7028770cdf8fda38
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-16 (Mon, 16 Dec 2024)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
Log Message:
-----------
us_legacy_converter: replaced QMap with QVector for all_data and all_triples. Stored indexes of triples, rawdata, and output runIDs in output_index and output_types
Commit: add15e1334fd2bb1d8fdbec7d624ab8c8971ad67
https://github.com/ehb54/ultrascan3/commit/add15e1334fd2bb1d8fdbec7d624ab8c8971ad67
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-16 (Mon, 16 Dec 2024)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
Log Message:
-----------
us_legacy_converter: update runid_updated method whether output runIDs already exist or not
Commit: 2683b126a007e311cff3b98ffe3f4ed98581c3a3
https://github.com/ehb54/ultrascan3/commit/2683b126a007e311cff3b98ffe3f4ed98581c3a3
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-16 (Mon, 16 Dec 2024)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
Log Message:
-----------
us_legacy_converter: finished writing function
Commit: cb5cc0e8bb7e2240a7a5682e066b7e2e50377191
https://github.com/ehb54/ultrascan3/commit/cb5cc0e8bb7e2240a7a5682e066b7e2e50377191
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2024-12-17 (Tue, 17 Dec 2024)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
Log Message:
-----------
Merge pull request #166 from samo38/issue_396
Issue 396: Beckman to OpenAUC converter
Commit: 401a83f3756cc2a1260f00e90671b418dc75c69e
https://github.com/ehb54/ultrascan3/commit/401a83f3756cc2a1260f00e90671b418dc75c69e
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-17 (Tue, 17 Dec 2024)
Changed paths:
M programs/us_spectrum/us_spectrum.cpp
Log Message:
-----------
us_spectrum: replace (*.*) with (*) in the QFileDialog.
Commit: 31180c5b63567fd01d53ded13e432f6ed8699ccd
https://github.com/ehb54/ultrascan3/commit/31180c5b63567fd01d53ded13e432f6ed8699ccd
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2024-12-17 (Tue, 17 Dec 2024)
Changed paths:
M programs/us_spectrum/us_spectrum.cpp
Log Message:
-----------
Merge pull request #169 from samo38/issue_398
us_spectrum: replace (*.*) with (*) in the QFileDialog.
Commit: 659169f343704474f09c6ab601e351abed528ea1
https://github.com/ehb54/ultrascan3/commit/659169f343704474f09c6ab601e351abed528ea1
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-18 (Wed, 18 Dec 2024)
Changed paths:
M admin/release/buildpkg.pl
Log Message:
-----------
add a new argument to the buildpkg.pl to set the ultrascan branch
Commit: 276f9348a5168d4923de832250329289bfe010c9
https://github.com/ehb54/ultrascan3/commit/276f9348a5168d4923de832250329289bfe010c9
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-18 (Wed, 18 Dec 2024)
Changed paths:
M admin/release/redhat/Dockerfile
M admin/release/ubuntu/Dockerfile
Log Message:
-----------
edit the redhat and ubuntu dockerfiles to make sure that it checkouts the right branch
Commit: 56ddd5c6fcd11e41322309d3d78d21a77e274855
https://github.com/ehb54/ultrascan3/commit/56ddd5c6fcd11e41322309d3d78d21a77e274855
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2024-12-20 (Fri, 20 Dec 2024)
Changed paths:
M admin/release/buildpkg.pl
M admin/release/redhat/Dockerfile
M admin/release/ubuntu/Dockerfile
Log Message:
-----------
update redhat version to 8.10 and qt version to 5.15.16
Commit: e803c01411f8143781e0eccd5e7e4c77a0161358
https://github.com/ehb54/ultrascan3/commit/e803c01411f8143781e0eccd5e7e4c77a0161358
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-01-07 (Tue, 07 Jan 2025)
Changed paths:
M gui/us_buffer_gui.cpp
M gui/us_buffer_gui.h
Log Message:
-----------
us_buffer_gui: add a slide bar to see how density and viscosity changes over temperature
Commit: 62367d547f9f85613890c9ca3423c199bf6d9d39
https://github.com/ehb54/ultrascan3/commit/62367d547f9f85613890c9ca3423c199bf6d9d39
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-01-08 (Wed, 08 Jan 2025)
Changed paths:
M gui/us_buffer_gui.cpp
M gui/us_buffer_gui.h
Log Message:
-----------
Merge pull request #172 from samo38/issue_403
us_buffer_gui: add a slide bar to see how density and viscosity chang…
Commit: e7fd0730884b5f79e57f7a4d6be3fd5269762e40
https://github.com/ehb54/ultrascan3/commit/e7fd0730884b5f79e57f7a4d6be3fd5269762e40
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-01-09 (Thu, 09 Jan 2025)
Changed paths:
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
GMP | R&D: 2. LIVE_UPDATE -- prep. for catching the failed optics situation ...
Commit: 2369ad21a38a080363833a97a88d1a6ce25515c3
https://github.com/ehb54/ultrascan3/commit/2369ad21a38a080363833a97a88d1a6ce25515c3
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-01-09 (Thu, 09 Jan 2025)
Changed paths:
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
GMP | R&D: 2. LIVE_UPDATE -- [prep.1] for catching the failed optics situation ...
Commit: 5461cc5a05556950b68746cd6700d5117077bd09
https://github.com/ehb54/ultrascan3/commit/5461cc5a05556950b68746cd6700d5117077bd09
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-01-09 (Thu, 09 Jan 2025)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.h
Log Message:
-----------
GMP | R&D: 2. LIVE_UPDATE -- [prep.2] for catching the failed optics situation ...
Commit: e042ef9ffef2cd2f552f64804b49e88fc96af218
https://github.com/ehb54/ultrascan3/commit/e042ef9ffef2cd2f552f64804b49e88fc96af218
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-01-09 (Thu, 09 Jan 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
GMP | R&D: 2. LIVE_UPDATE -- [prep.2a] for catching the failed optics situation ...
Commit: b78065317c05870e71747e0fbdfc3567c409a596
https://github.com/ehb54/ultrascan3/commit/b78065317c05870e71747e0fbdfc3567c409a596
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-01-09 (Thu, 09 Jan 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
GMP | R&D: 2. LIVE_UPDATE -- [prep.3] for catching the failed optics situation ...
Commit: 29c62d331d951ce62b62a351da5b1194755ce4ca
https://github.com/ehb54/ultrascan3/commit/29c62d331d951ce62b62a351da5b1194755ce4ca
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-01-09 (Thu, 09 Jan 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
GMP | R&D: 2. LIVE_UPDATE -- [prep.4] for catching the failed optics situation ...
Commit: b1b0c7681674428f11bade40a4047b7fa1e08283
https://github.com/ehb54/ultrascan3/commit/b1b0c7681674428f11bade40a4047b7fa1e08283
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-01-09 (Thu, 09 Jan 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
GMP | R&D: 2. LIVE_UPDATE -- [prep.5] for catching the failed optics situation ...
Commit: bd50f717dbdf30e0dcfd2137197cff5894e2229a
https://github.com/ehb54/ultrascan3/commit/bd50f717dbdf30e0dcfd2137197cff5894e2229a
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-01-13 (Mon, 13 Jan 2025)
Changed paths:
M utils/us_model.cpp
Log Message:
-----------
us_model.cpp: calculate_coefficients() function change the vbar to 1/vbar of the sedimentation is negative and buoyancy is positive.
Commit: 151d3fa3b52e734a334a6d7348b0213677f115cb
https://github.com/ehb54/ultrascan3/commit/151d3fa3b52e734a334a6d7348b0213677f115cb
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-01-14 (Tue, 14 Jan 2025)
Changed paths:
M utils/us_model.cpp
Log Message:
-----------
us_model.cpp: removed the comments on updating the vbar when the buoyancy>0 and s<0
Commit: 0612f20df1c484105971ad6141f4ccf75c95da8b
https://github.com/ehb54/ultrascan3/commit/0612f20df1c484105971ad6141f4ccf75c95da8b
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-01-14 (Tue, 14 Jan 2025)
Changed paths:
M programs/us_fematch/us_fematch.cpp
Log Message:
-----------
us_fematch.cpp: force the code to use the vbar from the solution instead of the Model table
Commit: 3abbb2dd3673834cb513ab3fffa2501a58f24815
https://github.com/ehb54/ultrascan3/commit/3abbb2dd3673834cb513ab3fffa2501a58f24815
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-01-16 (Thu, 16 Jan 2025)
Changed paths:
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
GMP | R&D: 2. LIVE_UPDATE -- [prep.6] for catching the failed optics situation when Exp. aborted by clicking 'STOP' in early stage (not completed)...
Commit: 5a005db9fc136bf692092f9acfde33412a2e2f3b
https://github.com/ehb54/ultrascan3/commit/5a005db9fc136bf692092f9acfde33412a2e2f3b
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-01-18 (Sat, 18 Jan 2025)
Changed paths:
M utils/us_model.cpp
Log Message:
-----------
us_model.cpp: comment out updating the vbar when ( s < 0 and buoyancy > 0 ) or ( s > 0 and buoyancy < 0 ). ALso, based on the Eq. 14, there is no f_f0 in the numerator under the square root.
Commit: b56ef21c1ae3163ec69ecf0e58999cb4a9e3cfd2
https://github.com/ehb54/ultrascan3/commit/b56ef21c1ae3163ec69ecf0e58999cb4a9e3cfd2
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-01-18 (Sat, 18 Jan 2025)
Changed paths:
M programs/us_2dsa/us_2dsa.cpp
Log Message:
-----------
us_2dsa.cpp: comment out buoyancy checking here and move it to the 2dsa_ctrl
Commit: effa5ece50e9d576408a12683e777d66a3a4753b
https://github.com/ehb54/ultrascan3/commit/effa5ece50e9d576408a12683e777d66a3a4753b
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-01-18 (Sat, 18 Jan 2025)
Changed paths:
M programs/us_2dsa/us_analysis_control_2d.cpp
Log Message:
-----------
us_analysis_control_2d.cpp: check the buoyancy before starting the fitting.
Commit: 07abed88b6692c472ddfccc928135989abd4ae6b
https://github.com/ehb54/ultrascan3/commit/07abed88b6692c472ddfccc928135989abd4ae6b
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-01-20 (Mon, 20 Jan 2025)
Changed paths:
M programs/us_fematch/us_fematch.cpp
Log Message:
-----------
us_fematch: taking back the lines that had been commented out to check vbar discrepancy between the model table and solution data
Commit: b4d84a57f6f7daf44419eeb5c5436c42a3ea1aad
https://github.com/ehb54/ultrascan3/commit/b4d84a57f6f7daf44419eeb5c5436c42a3ea1aad
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-01-21 (Tue, 21 Jan 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | 6. REPORTING -- bug fixed for processing individual C(s) ditributions for PCSA models...
Commit: 339cdfb9969efcc849a4bad7b24a1a9d19f4deac
https://github.com/ehb54/ultrascan3/commit/339cdfb9969efcc849a4bad7b24a1a9d19f4deac
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-01-22 (Wed, 22 Jan 2025)
Changed paths:
M gui/us_buffer_gui.cpp
M gui/us_buffer_gui.h
M gui/us_model_gui.cpp
M gui/us_model_gui.h
M gui/us_rotor_gui.cpp
M gui/us_rotor_gui.h
M gui/us_sim_params_gui.cpp
M gui/us_sim_params_gui.h
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_astfem_sim/us_astfem_sim.h
M programs/us_astfem_sim/us_clipdata.h
Log Message:
-----------
Add CLI support and refactor US Astfem Sim module
Implemented comprehensive command-line interface (CLI) parsing to enable headless operation, including flags for model, buffer, simulation parameters, rotor, and output options. Refactored variable names, added initialization for key attributes, and made codebase improvements like replacing raw pointers and enhancing readability. Introduced optional GUI-less behavior for improved automation and streamlined workflow.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 4dfcb52b7d4544e654ab73f30cafde902136c303
https://github.com/ehb54/ultrascan3/commit/4dfcb52b7d4544e654ab73f30cafde902136c303
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-01-22 (Wed, 22 Jan 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
Log Message:
-----------
Fix: us_astfem_sim producing wrong timestates
Corrected the formula for omega2t sum to use the average speed during acceleration instead of the final speed for each step. This fixes https://github.com/ehb54/ultrascan-tickets/issues/406
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 6fda53236b145fc4bb45c3d2131b23104c40d7f2
https://github.com/ehb54/ultrascan3/commit/6fda53236b145fc4bb45c3d2131b23104c40d7f2
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-01-22 (Wed, 22 Jan 2025)
Changed paths:
M gui/us_rotor_gui.cpp
Log Message:
-----------
Fix: remove debugging output
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: ad0bbfd7ccb8082f5211d750779af930bb165b2e
https://github.com/ehb54/ultrascan3/commit/ad0bbfd7ccb8082f5211d750779af930bb165b2e
Author: reecemartin48 <135046110+reecemartin48 at users.noreply.github.com>
Date: 2025-01-22 (Wed, 22 Jan 2025)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.h
Log Message:
-----------
Merge pull request #174 from ehb54/alexey-dev-issue404
Alexey dev issue404: Addresses a number of situations with data savings when one of the optics fails
Commit: 2b0c029fb49d64016b45c28bf892af49e47be5dc
https://github.com/ehb54/ultrascan3/commit/2b0c029fb49d64016b45c28bf892af49e47be5dc
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-01-23 (Thu, 23 Jan 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: initialize new GUI
Commit: 0adb41b3afedac5cf0dbc83f990bce306d3e6619
https://github.com/ehb54/ultrascan3/commit/0adb41b3afedac5cf0dbc83f990bce306d3e6619
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-01-24 (Fri, 24 Jan 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: US_Grid_Preset completed
Commit: 217edacf0513dacb7b6bd402106bcf486f788409
https://github.com/ehb54/ultrascan3/commit/217edacf0513dacb7b6bd402106bcf486f788409
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-01-24 (Fri, 24 Jan 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: add slot the update the z_param. modify indentation in the header file.
Commit: cd1079a1c06c73c607796408f586092e09ebeca3
https://github.com/ehb54/ultrascan3/commit/cd1079a1c06c73c607796408f586092e09ebeca3
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-01-25 (Sat, 25 Jan 2025)
Changed paths:
M programs/us_2dsa/us_analysis_control_2d.cpp
Log Message:
-----------
us_analysis_control_2d: check buoyancy only if the UGRID is set
Commit: 4b74572abd9e36bdad7e58da099d31bf248398c3
https://github.com/ehb54/ultrascan3/commit/4b74572abd9e36bdad7e58da099d31bf248398c3
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-01-25 (Sat, 25 Jan 2025)
Changed paths:
M utils/us_model.cpp
Log Message:
-----------
us_model: delete vbar updating. correct the equation of calculation of D from f_f0.
Commit: 7f4ace505028bb6a92637f487fc7a270b8139d03
https://github.com/ehb54/ultrascan3/commit/7f4ace505028bb6a92637f487fc7a270b8139d03
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-01-25 (Sat, 25 Jan 2025)
Changed paths:
M programs/us_2dsa/us_2dsa.cpp
Log Message:
-----------
us_2dsa: delete buoyancy checking and move it to us_analysis_control_2d.cpp
Commit: e1242caa092aa05455b9173a59410b6c2dd638b5
https://github.com/ehb54/ultrascan3/commit/e1242caa092aa05455b9173a59410b6c2dd638b5
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-01-26 (Sun, 26 Jan 2025)
Changed paths:
M programs/us_2dsa/us_2dsa.cpp
M programs/us_2dsa/us_analysis_control_2d.cpp
M utils/us_model.cpp
Log Message:
-----------
Merge pull request #173 from samo38/issue_405_2dsa
2DSA s,D correct griding
Commit: 306f48b6ec1533123518fd0a3a762357eed805eb
https://github.com/ehb54/ultrascan3/commit/306f48b6ec1533123518fd0a3a762357eed805eb
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-01-27 (Mon, 27 Jan 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: prune old variables, start to initialize validating the parameters.
Commit: a03b3f87db08330a6646d89cdc3457a469205417
https://github.com/ehb54/ultrascan3/commit/a03b3f87db08330a6646d89cdc3457a469205417
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-01-27 (Mon, 27 Jan 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
Log Message:
-----------
us_grid_editor.cpp: update the lineedit validators
Commit: ebd3ff2aaae8a0336c19561d5f3ab0a99eb64207
https://github.com/ehb54/ultrascan3/commit/ebd3ff2aaae8a0336c19561d5f3ab0a99eb64207
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-01-27 (Mon, 27 Jan 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: add calculate_20w().
Commit: fb572bd36e3243653e46633cb64004bfb12bc755
https://github.com/ehb54/ultrascan3/commit/fb572bd36e3243653e46633cb64004bfb12bc755
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-01-28 (Tue, 28 Jan 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
Log Message:
-----------
us_convert_gui: added the check_scans function to check number scans discrepancy among triples and truncates all triples' scans to the minimum one.
Commit: bf724828309bb9e8560642e2f919f7ba117eaf33
https://github.com/ehb54/ultrascan3/commit/bf724828309bb9e8560642e2f919f7ba117eaf33
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-01-28 (Tue, 28 Jan 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
Log Message:
-----------
us_grid_editor.cpp: add formula when ATTR_V, ATTR_K, ATTR_W are fixed
Commit: d4f1ead52b101f84348a7727915773a8089be8ec
https://github.com/ehb54/ultrascan3/commit/d4f1ead52b101f84348a7727915773a8089be8ec
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-01-28 (Tue, 28 Jan 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
us_convert_gui.cpp: fixed the issue with removing item from end of the scan array. Also a debug to see the number scans is added to the PseudoCalcAvgMWL function.
Commit: deb8ad96576d29e44f3d8223029f2cbaff256b05
https://github.com/ehb54/ultrascan3/commit/deb8ad96576d29e44f3d8223029f2cbaff256b05
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-01-29 (Wed, 29 Jan 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
Log Message:
-----------
us_grid_editor.cpp: disable D and F both when one of them is selected
Commit: 8b5f0b87f99e94e4d6e740984c9b0d1fa62f5ec1
https://github.com/ehb54/ultrascan3/commit/8b5f0b87f99e94e4d6e740984c9b0d1fa62f5ec1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-01-29 (Wed, 29 Jan 2025)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
Log Message:
-----------
GMP | R&D -- perform initial check for the Optima statuses of the runs in LIVE_UPDATE stage...
Commit: 0687e220a9feafc0db050f12d0f5d3ee7c6c1b63
https://github.com/ehb54/ultrascan3/commit/0687e220a9feafc0db050f12d0f5d3ee7c6c1b63
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-01-29 (Wed, 29 Jan 2025)
Changed paths:
M gui/us_select_item.cpp
M gui/us_select_item.h
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
Log Message:
-----------
GMP | R&D -- refresh Optima statuses of the runs in LIVE_UPDATE stage while program is open...
Commit: addb9f579e2dd5cbd72fbf1735c52d7c47a77c33
https://github.com/ehb54/ultrascan3/commit/addb9f579e2dd5cbd72fbf1735c52d7c47a77c33
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-01-29 (Wed, 29 Jan 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: finished GridPoint class
Commit: f416f2ff9ac54b203bf80986b548a1216d501a29
https://github.com/ehb54/ultrascan3/commit/f416f2ff9ac54b203bf80986b548a1216d501a29
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-01-30 (Thu, 30 Jan 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
Log Message:
-----------
Merge pull request #176 from samo38/issue_410_mw_auc
MW-AUC import causes crash #410
Commit: 10908f7cef0a5dce903452e0462c9e859e8264b3
https://github.com/ehb54/ultrascan3/commit/10908f7cef0a5dce903452e0462c9e859e8264b3
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-01-30 (Thu, 30 Jan 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: replace the gridpoint struct with GridPoint class
Commit: ab86005a3fbad734c6627523d6c4982aad10c79a
https://github.com/ehb54/ultrascan3/commit/ab86005a3fbad734c6627523d6c4982aad10c79a
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-01-31 (Fri, 31 Jan 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: complete the basic conversions between parametera except for (ATTR_S, ATTR_K, ATTR_M) that needs pecial care to calculate the vbar.
Commit: 1aa2265859f0e9848b2e6460c3fa02b7223f7ed8
https://github.com/ehb54/ultrascan3/commit/1aa2265859f0e9848b2e6460c3fa02b7223f7ed8
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-01 (Sat, 01 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: initialize plotting the region set by the user
Commit: e9ce1f869f3d70a58587bfb14a31992c66137ccf
https://github.com/ehb54/ultrascan3/commit/e9ce1f869f3d70a58587bfb14a31992c66137ccf
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-01 (Sat, 01 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: completed temporary plot
Commit: 2359f6db522c8bfaa72d1ea161f2bc10ad304426
https://github.com/ehb54/ultrascan3/commit/2359f6db522c8bfaa72d1ea161f2bc10ad304426
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-01 (Sat, 01 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: refine the GridPoint class.
Commit: dcbc391ea03885b7e1c6295686f9742a64580748
https://github.com/ehb54/ultrascan3/commit/dcbc391ea03885b7e1c6295686f9742a64580748
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-03 (Mon, 03 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: major update
Commit: 494dd27e584a7879afabf948a3329df8e6f83c3c
https://github.com/ehb54/ultrascan3/commit/494dd27e584a7879afabf948a3329df8e6f83c3c
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-03 (Mon, 03 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: remove unused button. set the grid setPen width to zero
Commit: d7542fb59a7c1adf0caab113cac758bd95b1faa0
https://github.com/ehb54/ultrascan3/commit/d7542fb59a7c1adf0caab113cac758bd95b1faa0
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-03 (Mon, 03 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: fixed grid size and color
Commit: 403e9efa108af451f8c7f99ca1020171439a201d
https://github.com/ehb54/ultrascan3/commit/403e9efa108af451f8c7f99ca1020171439a201d
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-03 (Mon, 03 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: add final_grid_size, redefine final_grid_points, update overlap()
Commit: d547e9f87efd7f0a1c02fe4a8bc9c807346de8ee
https://github.com/ehb54/ultrascan3/commit/d547e9f87efd7f0a1c02fe4a8bc9c807346de8ee
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-03 (Mon, 03 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: add grid_info, clear_xyz, get_xyz
Commit: 31a589b382a22dcf5420e21ff4f84c74ebc96403
https://github.com/ehb54/ultrascan3/commit/31a589b382a22dcf5420e21ff4f84c74ebc96403
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-03 (Mon, 03 Feb 2025)
Changed paths:
M programs/us_2dsa/us_2dsa.cpp
M programs/us_2dsa/us_analysis_control_2d.cpp
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.h
M utils/us_model.cpp
Log Message:
-----------
Merge remote-tracking branch 'upstream/master' into grid_editor
Commit: cf7e65afe0ca8c23cc34fe1bf86ca37a3c3fd889
https://github.com/ehb54/ultrascan3/commit/cf7e65afe0ca8c23cc34fe1bf86ca37a3c3fd889
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-04 (Tue, 04 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
Log Message:
-----------
us_grid_editor: fix the issue with the plot returns to the default setting when make new grid is pressed
Commit: 72a05eecd155a98e0a5a521b98cb02ce1de0e831
https://github.com/ehb54/ultrascan3/commit/72a05eecd155a98e0a5a521b98cb02ce1de0e831
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-02-05 (Wed, 05 Feb 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
Log Message:
-----------
Fix: Revert initialization of meniscus_ar to prevent edge case
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: af5dc7bc3cdf41f685cdeffa60bf4d48688ca13f
https://github.com/ehb54/ultrascan3/commit/af5dc7bc3cdf41f685cdeffa60bf4d48688ca13f
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-10 (Mon, 10 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: major upgrade to compute parameters
Commit: d3225f439138e85fe4732a103584d529ad3ae7bb
https://github.com/ehb54/ultrascan3/commit/d3225f439138e85fe4732a103584d529ad3ae7bb
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-14 (Fri, 14 Feb 2025)
Changed paths:
M utils/us_model.cpp
Log Message:
-----------
us_model.cpp: the correct formula to calculate f0 from s, vbar, k: f0(s,k,vbar) = 0.09 * VISC_20W * M_PI * sqrt( 0.02 * vbar * s * VISC_20W * f_f0 / (1.0 - ( vbar * DENS_20W ) ); also the function should return false if (s < 0.0 and buoyancyb > 0.0) or (s > 0.0 and buoyancyb < 0.0)
Commit: 2d2860a265939d7e4945f374bbad5eeb7483d7eb
https://github.com/ehb54/ultrascan3/commit/2d2860a265939d7e4945f374bbad5eeb7483d7eb
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-14 (Fri, 14 Feb 2025)
Changed paths:
M utils/us_math2.h
Log Message:
-----------
us_math2.h: Since the Durchschlag method is an approximate way to calculate protein vbar at different temperature and there is no such a way to do so for other molecules, as of now we assume that vbar is not function of the temperature for all molecules. This is a condsistent approach for every molecule to calculate the s and D correction value between 20 degreed standard water and experimental space.
Commit: 7dba6de43367d73ce744efd4fd8b96f4f8cd76f4
https://github.com/ehb54/ultrascan3/commit/7dba6de43367d73ce744efd4fd8b96f4f8cd76f4
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-14 (Fri, 14 Feb 2025)
Changed paths:
M programs/us_mpi_analysis/us_mpi_analysis.cpp
Log Message:
-----------
us_mpi_analysis.cpp: used vbar of the grid point in case that custom grid is called. otherwise, use the dataset->vbar20 to finalize the model components.
Commit: 16073b18ffbff68d7dc115dfa7d9fe763d4baa80
https://github.com/ehb54/ultrascan3/commit/16073b18ffbff68d7dc115dfa7d9fe763d4baa80
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-14 (Fri, 14 Feb 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
Log Message:
-----------
us_astfem_sim.cpp: get s20w_correction and D20w_correction for each component separately instead of using the default vbar 0.72 or weight average vbar
Commit: 41958e217d3f642e47004b8a44be8245a0da4f69
https://github.com/ehb54/ultrascan3/commit/41958e217d3f642e47004b8a44be8245a0da4f69
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-16 (Sun, 16 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: major update
Commit: 26d938f89ff0738af49546366b21444657634356
https://github.com/ehb54/ultrascan3/commit/26d938f89ff0738af49546366b21444657634356
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-16 (Sun, 16 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: finished delete and update functions
Commit: edfc9fbc1e94a1bab3d9cb8e2551b9364058d234
https://github.com/ehb54/ultrascan3/commit/edfc9fbc1e94a1bab3d9cb8e2551b9364058d234
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-16 (Sun, 16 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: add check buffer and related functions
Commit: d06b8ebc3b6fc5c82f8277ef89e376927ab7c278
https://github.com/ehb54/ultrascan3/commit/d06b8ebc3b6fc5c82f8277ef89e376927ab7c278
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-16 (Sun, 16 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: finished the function to save the model
Commit: fd61a482fa590529cfa0df66e7deb4412ad9261a
https://github.com/ehb54/ultrascan3/commit/fd61a482fa590529cfa0df66e7deb4412ad9261a
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-17 (Mon, 17 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: add a solve to the qube root of vbar when s,k,m are set. rearrange header files between cpp and h files.
Commit: b93a956ed966321820cb5bdea0278be794229e64
https://github.com/ehb54/ultrascan3/commit/b93a956ed966321820cb5bdea0278be794229e64
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-17 (Mon, 17 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: rename pb_validate to pb_add_update. calculate vbar from s,k,m. no garanty that mw remains constant
Commit: 0b1610c071bb749307ef2f5f5f5aae99d318c328
https://github.com/ehb54/ultrascan3/commit/0b1610c071bb749307ef2f5f5f5aae99d318c328
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-17 (Mon, 17 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: remove f from the preset widget
Commit: 51084662ee5eb3e87a8b3f90243692d1af323505
https://github.com/ehb54/ultrascan3/commit/51084662ee5eb3e87a8b3f90243692d1af323505
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-17 (Mon, 17 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: complete US_Grid_Preset
Commit: a02c57751b6e430ee1fb7743d199e63023bff802
https://github.com/ehb54/ultrascan3/commit/a02c57751b6e430ee1fb7743d199e63023bff802
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-17 (Mon, 17 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
Log Message:
-----------
us_grid_editor: removed every condition from calculate_20w() that ATTR_F is one of the preset parameters
Commit: ec2c6938dfa28eb510bae58a224904e5b9b52713
https://github.com/ehb54/ultrascan3/commit/ec2c6938dfa28eb510bae58a224904e5b9b52713
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-17 (Mon, 17 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: add all_from_sdv() to use US_Model to compute parameters based on the s, d, v
Commit: d3adeaef8ad6362e83096b7bbfc08e826d10336d
https://github.com/ehb54/ultrascan3/commit/d3adeaef8ad6362e83096b7bbfc08e826d10336d
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-17 (Mon, 17 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: fixed sorting. add row, col, id to every grid point. remove f from plot control
Commit: 61e4b99c7e6be8a068db6a890e0d8c3bce9b7d78
https://github.com/ehb54/ultrascan3/commit/61e4b99c7e6be8a068db6a890e0d8c3bce9b7d78
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-17 (Mon, 17 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
Log Message:
-----------
us_grid_editor: refine plot_points()
Commit: d6ed94bb9e9d47eb067fb948a8990baf4889c23b
https://github.com/ehb54/ultrascan3/commit/d6ed94bb9e9d47eb067fb948a8990baf4889c23b
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-17 (Mon, 17 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
Log Message:
-----------
us_grid_editor: activate plotting s over s* and D over D*
Commit: c570632688385153eb3a929f8a77617b282cc713
https://github.com/ehb54/ultrascan3/commit/c570632688385153eb3a929f8a77617b282cc713
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-17 (Mon, 17 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
Log Message:
-----------
us_grid_editor.cpp: refine messages
Commit: 25efb6fb3b7f9e72a97ea17d1745a692822d381b
https://github.com/ehb54/ultrascan3/commit/25efb6fb3b7f9e72a97ea17d1745a692822d381b
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-18 (Tue, 18 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: doc strings
Commit: 6b0bd93671b52b34478e155903d46cc14cd79e13
https://github.com/ehb54/ultrascan3/commit/6b0bd93671b52b34478e155903d46cc14cd79e13
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-02-19 (Wed, 19 Feb 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M utils/us_math2.h
M utils/us_model.cpp
Log Message:
-----------
Merge pull request #177 from samo38/issue_416
Ticket 416
Commit: 45c86fd6e3f10dd7e741d6f2d42b8d0b98a055f1
https://github.com/ehb54/ultrascan3/commit/45c86fd6e3f10dd7e741d6f2d42b8d0b98a055f1
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-19 (Wed, 19 Feb 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M utils/us_math2.h
M utils/us_model.cpp
Log Message:
-----------
Merge remote-tracking branch 'upstream/master' into grid_editor
Commit: 8d058a5ea8849d9a5fd642fa6724ba7aa52add8c
https://github.com/ehb54/ultrascan3/commit/8d058a5ea8849d9a5fd642fa6724ba7aa52add8c
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-20 (Thu, 20 Feb 2025)
Changed paths:
M gui/us_buffer_gui.cpp
M gui/us_buffer_gui.h
Log Message:
-----------
us_buffer_gui: signal-slot connection failed with signal valueChanged(double, double). Renamed it to a different name from valueChanged(US_Buffer)
Commit: 2431aa38f21199e71afaf8c43245e6cc585e9df5
https://github.com/ehb54/ultrascan3/commit/2431aa38f21199e71afaf8c43245e6cc585e9df5
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-20 (Thu, 20 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: add functions to load buffer from DB
Commit: 6389170887f6efcd5c9a24c6fe8e30790787f4f2
https://github.com/ehb54/ultrascan3/commit/6389170887f6efcd5c9a24c6fe8e30790787f4f2
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-02-20 (Thu, 20 Feb 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
Log Message:
-----------
Add CLI option to handle errors and bypass GUI if specified
Introduced a new command-line option, `errors-cl`, to redirect error messages to the console and prevent GUI initialization when errors occur. Enhanced error handling across various loading processes (model, buffer, simulation parameters, rotor, and save path) to respect this option and exit gracefully in headless mode. This update improves usability in non-GUI environments.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: ffd75b0e5ff1534c899959c9ad6d56d1d94e595f
https://github.com/ehb54/ultrascan3/commit/ffd75b0e5ff1534c899959c9ad6d56d1d94e595f
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-02-20 (Thu, 20 Feb 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
Log Message:
-----------
Fix bracket errors
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: effe1589018581a6c261ddc0d52687f0df1f8960
https://github.com/ehb54/ultrascan3/commit/effe1589018581a6c261ddc0d52687f0df1f8960
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-20 (Thu, 20 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
Log Message:
-----------
us_grid_editor: add load model push button
Commit: b2d24ec526474fa78574683989ef3d9b86ca320c
https://github.com/ehb54/ultrascan3/commit/b2d24ec526474fa78574683989ef3d9b86ca320c
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-21 (Fri, 21 Feb 2025)
Changed paths:
M utils/us_model.cpp
M utils/us_model.h
Log Message:
-----------
utils/us_model: added custom grid metadata. It is designed to be used in the grid_editor program
Commit: 56a98b54ef6d03376f737ea0096d1b4c0473cc76
https://github.com/ehb54/ultrascan3/commit/56a98b54ef6d03376f737ea0096d1b4c0473cc76
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-21 (Fri, 21 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: major update: added model and buffer load function, rearrange layout
Commit: dfc41297be5972db6a3f2345ab2bcb53e2b565c8
https://github.com/ehb54/ultrascan3/commit/dfc41297be5972db6a3f2345ab2bcb53e2b565c8
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-24 (Mon, 24 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: add minimu s value checker
Commit: 56813d212673a18485a6f1f83465adc1db4c5787
https://github.com/ehb54/ultrascan3/commit/56813d212673a18485a6f1f83465adc1db4c5787
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-24 (Mon, 24 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: add lineedit to show the buffer density and viscodity at different temperature
Commit: 42a14e5ad72a050ee773a50193ecd92654945ac3
https://github.com/ehb54/ultrascan3/commit/42a14e5ad72a050ee773a50193ecd92654945ac3
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-02-25 (Tue, 25 Feb 2025)
Changed paths:
M gui/us_extinction_gui.cpp
Log Message:
-----------
Updated the extinction column header to file name identifier
Commit: 61a5d8d4b4d5f1b2b7f4947fc72e6d41699b8dcc
https://github.com/ehb54/ultrascan3/commit/61a5d8d4b4d5f1b2b7f4947fc72e6d41699b8dcc
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-02-27 (Thu, 27 Feb 2025)
Changed paths:
R programs/us_mwl_db_query/us_mwl_db_query.pro
R programs/us_mwl_db_query/us_mwl_pltctrl.cpp
R programs/us_mwl_db_query/us_mwl_pltctrl.h
R programs/us_mwl_db_query/us_mwl_run.cpp
R programs/us_mwl_db_query/us_mwl_run.h
R programs/us_mwl_db_query/us_mwlr_viewer.cpp
R programs/us_mwl_db_query/us_mwlr_viewer.h
Log Message:
-----------
Delete dublicated program to us_mwlr_viewer
Commit: b8ab84e94c9fb4dacbbd47e22f6beb0a890061a3
https://github.com/ehb54/ultrascan3/commit/b8ab84e94c9fb4dacbbd47e22f6beb0a890061a3
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-27 (Thu, 27 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
Log Message:
-----------
us_grid_editor: set QLocale::C in the double validator
Commit: 4541b25517d15b1eb99058ee9828d9e5bd0910b2
https://github.com/ehb54/ultrascan3/commit/4541b25517d15b1eb99058ee9828d9e5bd0910b2
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-27 (Thu, 27 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
Log Message:
-----------
us_grid_editor: improved the message after s, vbar validation failed
Commit: 8eefe08e3ab0d924f516f2c0a69e358500d6b289
https://github.com/ehb54/ultrascan3/commit/8eefe08e3ab0d924f516f2c0a69e358500d6b289
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-27 (Thu, 27 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
Log Message:
-----------
us_grid_editor.cpp: correct plot_tmp() and rm_tmp_items()
Commit: 1ce20181461c6b648291bb7a48579631601567ae
https://github.com/ehb54/ultrascan3/commit/1ce20181461c6b648291bb7a48579631601567ae
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-02-28 (Fri, 28 Feb 2025)
Changed paths:
M programs/us_config/us_database.cpp
M programs/us_config/us_database.h
Log Message:
-----------
Add paste button and cleanup strings to prevent errors from copy paste
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: edb299bc2f5d5150bdb1ea20d22c7ae5ab954d3c
https://github.com/ehb54/ultrascan3/commit/edb299bc2f5d5150bdb1ea20d22c7ae5ab954d3c
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-02-28 (Fri, 28 Feb 2025)
Changed paths:
M programs/us_config/us_database.cpp
M programs/us_config/us_database.h
Log Message:
-----------
Code formating
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 3059db00d76bff6246cb16c7e1630722e23f23bd
https://github.com/ehb54/ultrascan3/commit/3059db00d76bff6246cb16c7e1630722e23f23bd
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-02-28 (Fri, 28 Feb 2025)
Changed paths:
M programs/us_config/us_database.cpp
Log Message:
-----------
Prevent passwords from being trimmed
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 394a4acd5fcc9d7f53bd88e4966d45fc83ac0b4e
https://github.com/ehb54/ultrascan3/commit/394a4acd5fcc9d7f53bd88e4966d45fc83ac0b4e
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-02-28 (Fri, 28 Feb 2025)
Changed paths:
R programs/us_esigner_gmp_aux/us_esigner_gmp.pro
R programs/us_esigner_gmp_aux/us_esigner_gmp_main.cpp
Log Message:
-----------
Delete programs/us_esigner_gmp_aux directory
Commit: 9066b3579ddb35981ad457ed561f480920d3da7f
https://github.com/ehb54/ultrascan3/commit/9066b3579ddb35981ad457ed561f480920d3da7f
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-28 (Fri, 28 Feb 2025)
Changed paths:
M programs/us_predict2/us_predict2.cpp
Log Message:
-----------
us_predict2.cpp: buffer signal is corrected
Commit: 96e09cb05bc8264f71793b1b9afbf39a4abc599a
https://github.com/ehb54/ultrascan3/commit/96e09cb05bc8264f71793b1b9afbf39a4abc599a
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-02-28 (Fri, 28 Feb 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: Improved data input validation
Commit: d11f2339e3fcbe95a88146cf2c9df9d67d180faa
https://github.com/ehb54/ultrascan3/commit/d11f2339e3fcbe95a88146cf2c9df9d67d180faa
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-03-01 (Sat, 01 Mar 2025)
Changed paths:
M utils/us_model.cpp
M utils/us_model.h
Log Message:
-----------
us_model: adding xLogarithmic feature to the custom grid metadata
Commit: e402da25d1d7ce993dc9fb7e4e33f8ef0350c59d
https://github.com/ehb54/ultrascan3/commit/e402da25d1d7ce993dc9fb7e4e33f8ef0350c59d
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-03-02 (Sun, 02 Mar 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: adding X-Axis Logarithmic checkbox.
Commit: 1ecf921adba79872817fbff51a859f17fd02a21d
https://github.com/ehb54/ultrascan3/commit/1ecf921adba79872817fbff51a859f17fd02a21d
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-03-02 (Sun, 02 Mar 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: adding a slot when zVal changes. refine minmax double type checking. refine temp plot function
Commit: fe7133e7390603ec698bb5c89c05bc3cc73ff9c3
https://github.com/ehb54/ultrascan3/commit/fe7133e7390603ec698bb5c89c05bc3cc73ff9c3
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-03-02 (Sun, 02 Mar 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: adding x-axis logarithmic functions
Commit: a0bf5923888db88d0154633481a8fd7b412f01ff
https://github.com/ehb54/ultrascan3/commit/a0bf5923888db88d0154633481a8fd7b412f01ff
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-03-03 (Mon, 03 Mar 2025)
Changed paths:
R programs/us_esigner_gmp_aux/us_esigner_gmp.pro
R programs/us_esigner_gmp_aux/us_esigner_gmp_main.cpp
Log Message:
-----------
Merge pull request #182 from ehb54/lukas/issue-215
Delete programs/us_esigner_gmp_aux directory
Commit: a9ae3505468328c3f517f65ca8a52910227f6cdf
https://github.com/ehb54/ultrascan3/commit/a9ae3505468328c3f517f65ca8a52910227f6cdf
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-03-03 (Mon, 03 Mar 2025)
Changed paths:
R programs/us_esigner_gmp_aux/us_esigner_gmp.pro
R programs/us_esigner_gmp_aux/us_esigner_gmp_main.cpp
Log Message:
-----------
Merge remote-tracking branch 'upstream/master' into grid_editor
Commit: 36fbb78274624ec179e9b8eb7915d34278539ad6
https://github.com/ehb54/ultrascan3/commit/36fbb78274624ec179e9b8eb7915d34278539ad6
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-05 (Wed, 05 Mar 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
GMP | R&D : 3. IMPORT -- remove 'todo' section & reorginize GUI a bit ...
Commit: f1a395f2789f8541cd1e9127762368a6e64c5faa
https://github.com/ehb54/ultrascan3/commit/f1a395f2789f8541cd1e9127762368a6e64c5faa
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-05 (Wed, 05 Mar 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
Log Message:
-----------
GMP-ABDE : 4. EDITING -- prelim. address all points discussed ...
Commit: 11f0b57b408e864f2f3071085f8da651d3e0747f
https://github.com/ehb54/ultrascan3/commit/11f0b57b408e864f2f3071085f8da651d3e0747f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-06 (Thu, 06 Mar 2025)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
Log Message:
-----------
GMP-ABDE : EDITING-TO-REPORT -- skip ANALYSIS, proper finishing and switch to rpeort ...
Commit: 413c2d2de552a2acbdec6ed1ba3c1c35f7d17cc2
https://github.com/ehb54/ultrascan3/commit/413c2d2de552a2acbdec6ed1ba3c1c35f7d17cc2
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-03-06 (Thu, 06 Mar 2025)
Changed paths:
M gui/us_extinction_gui.cpp
Log Message:
-----------
Merge pull request #179 from ehb54/Issue422
Updated the extinction column header to file name identifier
Commit: 46ef17ccb5d6b44cdf59a9e15c6078f46a842e34
https://github.com/ehb54/ultrascan3/commit/46ef17ccb5d6b44cdf59a9e15c6078f46a842e34
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-03-06 (Thu, 06 Mar 2025)
Changed paths:
M gui/us_select_item.cpp
M gui/us_select_item.h
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
Log Message:
-----------
Merge pull request #183 from ehb54/alexey-dev-issue414
Alexey dev issue414: Show actual instrument status uponn program launch, and also via 'Refresg Optima Status' button
Commit: ccc9e240b6e49a3788cda94636f78934f3dcea8c
https://github.com/ehb54/ultrascan3/commit/ccc9e240b6e49a3788cda94636f78934f3dcea8c
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-07 (Fri, 07 Mar 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
Log Message:
-----------
Initialize meniscus_ar properly
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 46b82dacad6053a4541af6ad2e5bff717ba6e1bc
https://github.com/ehb54/ultrascan3/commit/46b82dacad6053a4541af6ad2e5bff717ba6e1bc
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-03-07 (Fri, 07 Mar 2025)
Changed paths:
R programs/us_mwl_db_query/us_mwl_db_query.pro
R programs/us_mwl_db_query/us_mwl_pltctrl.cpp
R programs/us_mwl_db_query/us_mwl_pltctrl.h
R programs/us_mwl_db_query/us_mwl_run.cpp
R programs/us_mwl_db_query/us_mwl_run.h
R programs/us_mwl_db_query/us_mwlr_viewer.cpp
R programs/us_mwl_db_query/us_mwlr_viewer.h
Log Message:
-----------
Merge pull request #180 from ehb54/lukas/issue-295
Delete dublicated program to us_mwlr_viewer
Commit: a525c729d9cd3be68cf04fd97f7bebfe2f5313ba
https://github.com/ehb54/ultrascan3/commit/a525c729d9cd3be68cf04fd97f7bebfe2f5313ba
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-03-07 (Fri, 07 Mar 2025)
Changed paths:
M programs/us_config/us_database.cpp
M programs/us_config/us_database.h
Log Message:
-----------
Merge pull request #181 from ehb54/lukas/db-setup
Enhance database setup GUI
Commit: 0a3bc328a4ac8c64d292ba083a475c665954e973
https://github.com/ehb54/ultrascan3/commit/0a3bc328a4ac8c64d292ba083a475c665954e973
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-03-07 (Fri, 07 Mar 2025)
Changed paths:
M CITATION.cff
Log Message:
-----------
Update CITATION.cff
Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Commit: a6a1de535bbd14450482d3e5ef9c02f696ae215e
https://github.com/ehb54/ultrascan3/commit/a6a1de535bbd14450482d3e5ef9c02f696ae215e
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-03-07 (Fri, 07 Mar 2025)
Changed paths:
M CITATION.cff
Log Message:
-----------
Update CITATION.cff
Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Commit: 118bd93bedd2e51a719f34206c99ec1e3b758df3
https://github.com/ehb54/ultrascan3/commit/118bd93bedd2e51a719f34206c99ec1e3b758df3
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-03-07 (Fri, 07 Mar 2025)
Changed paths:
M CITATION.cff
Log Message:
-----------
Update CITATION.cff
Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Commit: c1e15b90768e3fa83b13afb5f50bfe5b9561259f
https://github.com/ehb54/ultrascan3/commit/c1e15b90768e3fa83b13afb5f50bfe5b9561259f
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-03-07 (Fri, 07 Mar 2025)
Changed paths:
M CITATION.cff
Log Message:
-----------
Update CITATION.cff
Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Commit: 321e3f890bb7bd7dfb30f8e5b6b28e2f5e934acf
https://github.com/ehb54/ultrascan3/commit/321e3f890bb7bd7dfb30f8e5b6b28e2f5e934acf
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-03-07 (Fri, 07 Mar 2025)
Changed paths:
M CITATION.cff
Log Message:
-----------
Update CITATION.cff
Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Commit: 1247ef6b862e5642ea1071bfe46137577c18529d
https://github.com/ehb54/ultrascan3/commit/1247ef6b862e5642ea1071bfe46137577c18529d
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-03-07 (Fri, 07 Mar 2025)
Changed paths:
A CITATION.cff
Log Message:
-----------
Merge pull request #108 from ehb54/demeler-patch-1
Added CFF Citation file
Commit: 282e745bb8512227b52bd3dc78e33c5f6f33dc56
https://github.com/ehb54/ultrascan3/commit/282e745bb8512227b52bd3dc78e33c5f6f33dc56
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-03-07 (Fri, 07 Mar 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
Log Message:
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us_grid_editor: update label names
Commit: 8f82899b4fe2afdd3340c760b4bcbdf5129955dc
https://github.com/ehb54/ultrascan3/commit/8f82899b4fe2afdd3340c760b4bcbdf5129955dc
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-03-07 (Fri, 07 Mar 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
Log Message:
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us_grid_editor: fixed the plotting issue if the fixed attribute
Commit: 97410a8ee97df46bafab7e6500fbefcee5aae2c7
https://github.com/ehb54/ultrascan3/commit/97410a8ee97df46bafab7e6500fbefcee5aae2c7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-07 (Fri, 07 Mar 2025)
Changed paths:
M programs/us_buoyancy/us_buoyancy.cpp
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
Log Message:
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GMP-ABDE, ABDE program : 4. EDITING -- when manually editing channel, treat as widget, hide/restore the rest; disbale AUTO fit in the ABDE program upon data load ...
Commit: 3677b206ae367f13886a6cbd520cec861e631d89
https://github.com/ehb54/ultrascan3/commit/3677b206ae367f13886a6cbd520cec861e631d89
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-10 (Mon, 10 Mar 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
Log Message:
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GMP-ABDE: 4. EDITING -- progress on linear-baseline-correction approx. for each channel ...
Commit: c052b66c83b870c3bb799e7e06bcc4c3277d22ba
https://github.com/ehb54/ultrascan3/commit/c052b66c83b870c3bb799e7e06bcc4c3277d22ba
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-10 (Mon, 10 Mar 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
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GMP-ABDE: 4. EDITING -- [few bugs fixed for ] progress on linear-baseline-correction approx. for each channel ...
Commit: fe14c2370186048875260e0d4a4656e250809049
https://github.com/ehb54/ultrascan3/commit/fe14c2370186048875260e0d4a4656e250809049
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-03-10 (Mon, 10 Mar 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
Log Message:
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us_grid_editor.cpp: update subgride symbol size
Commit: c8744acce7c4f0a03639f3976447558bca6d4c9c
https://github.com/ehb54/ultrascan3/commit/c8744acce7c4f0a03639f3976447558bca6d4c9c
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-03-10 (Mon, 10 Mar 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
Log Message:
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us_grid_editor.cpp: fixed the issue with plotting z-parameter
Commit: c215b19f2a00d6cd93720052c3724006a08b1aa8
https://github.com/ehb54/ultrascan3/commit/c215b19f2a00d6cd93720052c3724006a08b1aa8
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-03-10 (Mon, 10 Mar 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
Log Message:
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us_grid_editor.cpp: refined setup_grid()
Commit: 0ff6374e15149181664cbb20de6d1cad9186315b
https://github.com/ehb54/ultrascan3/commit/0ff6374e15149181664cbb20de6d1cad9186315b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-10 (Mon, 10 Mar 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
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GMP-ABDE: 4. EDITING -- more work on porting ABDE-GMP-editing to existing framework.....
Commit: deb6367c964735ef6c82b1a7a4c9eaa2ca5cfd1f
https://github.com/ehb54/ultrascan3/commit/deb6367c964735ef6c82b1a7a4c9eaa2ca5cfd1f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-13 (Thu, 13 Mar 2025)
Changed paths:
A CITATION.cff
M gui/us_extinction_gui.cpp
M gui/us_select_item.cpp
M gui/us_select_item.h
M programs/us_2dsa/us_2dsa.cpp
M programs/us_2dsa/us_analysis_control_2d.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_config/us_database.cpp
M programs/us_config/us_database.h
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
R programs/us_esigner_gmp_aux/us_esigner_gmp.pro
R programs/us_esigner_gmp_aux/us_esigner_gmp_main.cpp
M programs/us_mpi_analysis/us_mpi_analysis.cpp
R programs/us_mwl_db_query/us_mwl_db_query.pro
R programs/us_mwl_db_query/us_mwl_pltctrl.cpp
R programs/us_mwl_db_query/us_mwl_pltctrl.h
R programs/us_mwl_db_query/us_mwl_run.cpp
R programs/us_mwl_db_query/us_mwl_run.h
R programs/us_mwl_db_query/us_mwlr_viewer.cpp
R programs/us_mwl_db_query/us_mwlr_viewer.h
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.h
M utils/us_math2.h
M utils/us_model.cpp
Log Message:
-----------
Merge pull request #186 from ehb54/master
merge master to alexey-dev-issue409
Commit: 7e4e10bf62879c7d2b688d1a429aa4038ab5b77a
https://github.com/ehb54/ultrascan3/commit/7e4e10bf62879c7d2b688d1a429aa4038ab5b77a
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-03-13 (Thu, 13 Mar 2025)
Changed paths:
M programs/us_config/us_database.cpp
Log Message:
-----------
remove std::as_const
Commit: 3224a2513d8c881ee7fcc937819ec11e0bf80e5f
https://github.com/ehb54/ultrascan3/commit/3224a2513d8c881ee7fcc937819ec11e0bf80e5f
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-03-13 (Thu, 13 Mar 2025)
Changed paths:
M programs/us_config/us_database.cpp
Log Message:
-----------
Merge pull request #187 from ehb54/lukas/as_const
remove std::as_const
Commit: f10f53437efb9c3fde45fae8c86bb073b2f97524
https://github.com/ehb54/ultrascan3/commit/f10f53437efb9c3fde45fae8c86bb073b2f97524
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-13 (Thu, 13 Mar 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
Log Message:
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Set simulation parameter flag in set_parameters()
Added the `simparams.sim` flag initialization to ensure proper simulation configuration. This change aligns with the expected setup behavior during parameter initialization.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: afca6e1f7bf135d11ee680e132078c76ebe5c262
https://github.com/ehb54/ultrascan3/commit/afca6e1f7bf135d11ee680e132078c76ebe5c262
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-13 (Thu, 13 Mar 2025)
Changed paths:
M programs/us_config/us_database.cpp
Log Message:
-----------
Merge pull request #188 from ehb54/master
recent std: problems
Commit: a78a16abccfc8dab04340497917c4a3d8b3336a2
https://github.com/ehb54/ultrascan3/commit/a78a16abccfc8dab04340497917c4a3d8b3336a2
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-13 (Thu, 13 Mar 2025)
Changed paths:
M programs/us_convert/us_convert.cpp
Log Message:
-----------
Adjust acceleration correction calculations in us_convert.cpp
Updated the tfac multiplier to (3.0 / 2.0) and revised formulas for azwrate and w_offs to ensure more accurate handling of low acceleration scenarios. These changes align better with the intended mathematical model and improve calculation precision.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 612793407746781c19aa30c284bd884030f618d7
https://github.com/ehb54/ultrascan3/commit/612793407746781c19aa30c284bd884030f618d7
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-13 (Thu, 13 Mar 2025)
Changed paths:
M utils/us_astfem_math.cpp
Log Message:
-----------
Adjust acceleration factor calculation in ASTFEM math.
Updated the `tfac` factor from `4/3` to `3/2` to correct the acceleration time calculation. This aligns the code with the refined mathematical model and ensures more accurate computations of rotor dynamics.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: bc198e7562788b8197fc562cffdf32a0387054a3
https://github.com/ehb54/ultrascan3/commit/bc198e7562788b8197fc562cffdf32a0387054a3
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-13 (Thu, 13 Mar 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
Log Message:
-----------
Add additional debug logs for simulation parameter tracking
Enhanced debug output by including more details about key variables such as `w2tinc`, `timeinc`, and `time1` during the parameter setup. These changes aim to facilitate debugging and provide clearer insights into simulation computations.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 6b3cd7cfa20f5f8ee5092ff3dba00d2965362eaf
https://github.com/ehb54/ultrascan3/commit/6b3cd7cfa20f5f8ee5092ff3dba00d2965362eaf
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-14 (Fri, 14 Mar 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
GMP-ABDE: 4. EDITING -- few bugs fixed as to compatibility of stand-alone & GMP Editing...
Commit: f40ee9b3921c410c811c4dd28015119f77716208
https://github.com/ehb54/ultrascan3/commit/f40ee9b3921c410c811c4dd28015119f77716208
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-16 (Sun, 16 Mar 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
Log Message:
-----------
GMP-ABDE: 4. EDITING -- progress on enabling per-triple modification of the linear baseline corrections vs. per-channel (aka apply to all); ...
Commit: 86327c48f1ee7b33ec8bcc08944643bf9f235f37
https://github.com/ehb54/ultrascan3/commit/86327c48f1ee7b33ec8bcc08944643bf9f235f37
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-03-16 (Sun, 16 Mar 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: change the sorting approach to generate subgrids. The new way is to sort all points by their x values, then sort them by their local row index inside the their partial grids. This way produces a better dirtributed subgrid points over partial grids.
Commit: 629c78a2249e839ec693f5176e3ca70799433f18
https://github.com/ehb54/ultrascan3/commit/629c78a2249e839ec693f5176e3ca70799433f18
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-03-16 (Sun, 16 Mar 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
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us_grid_editor: rename the 'Default Plot' to the 'plot (y-axis) over (x-axis)'
Commit: 1cacca27ce85d55b53c61a5089f8364cff737022
https://github.com/ehb54/ultrascan3/commit/1cacca27ce85d55b53c61a5089f8364cff737022
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-03-16 (Sun, 16 Mar 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
added DbgLv function
Commit: aa721800844fa90cc321728e5e88d1ef996e12d4
https://github.com/ehb54/ultrascan3/commit/aa721800844fa90cc321728e5e88d1ef996e12d4
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-17 (Mon, 17 Mar 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
Log Message:
-----------
GMP-ABDE: 4. EDITING -- [more on..] progress on enabling per-triple modification of the linear baseline corrections vs. per-channel (aka apply to all); ...
Commit: 5946d5a0f95bf68b1014b8269a019b1a65450ea5
https://github.com/ehb54/ultrascan3/commit/5946d5a0f95bf68b1014b8269a019b1a65450ea5
Author: reecemartin48 <135046110+reecemartin48 at users.noreply.github.com>
Date: 2025-03-17 (Mon, 17 Mar 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
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Merge pull request #184 from ehb54/alexey-dev-issue409
GMP | 6. REPORTING -- bug fixed for processing individual C(s) ditributions for PCSA cases
Commit: 1203a9f845938da8b1dd4281e0dd072a1a37ad61
https://github.com/ehb54/ultrascan3/commit/1203a9f845938da8b1dd4281e0dd072a1a37ad61
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-17 (Mon, 17 Mar 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_astfem_sim/us_astfem_sim.h
Log Message:
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Automatically save run.xml and edit.xml when saving simulation data
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 6cc9d10408d91922519bc36e4aa578d61facdf51
https://github.com/ehb54/ultrascan3/commit/6cc9d10408d91922519bc36e4aa578d61facdf51
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-17 (Mon, 17 Mar 2025)
Changed paths:
M programs/us_convert/us_convert.cpp
Log Message:
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fix the w_offs calculation based on the new formular
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: d9da67e53742197104782eeca25be6de2e54449c
https://github.com/ehb54/ultrascan3/commit/d9da67e53742197104782eeca25be6de2e54449c
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-17 (Mon, 17 Mar 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
Log Message:
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Update omega2t calculation logic and fix type casting.
Revised the computation of `w2tsum` to improve accuracy during acceleration and constant-speed phases. Added a type cast to ensure `time_first` is stored as an integer. These changes enhance precision and prevent potential runtime issues.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: b6a6d1a88ca4a976b611cb81541ea788d2670d97
https://github.com/ehb54/ultrascan3/commit/b6a6d1a88ca4a976b611cb81541ea788d2670d97
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-17 (Mon, 17 Mar 2025)
Changed paths:
M utils/us_astfem_math.cpp
Log Message:
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Use `qCeil` instead of `qRound` for calculating `t_acc`.
This change ensures more accurate calculation of `t_acc` by rounding up instead of rounding to the nearest value. Additionally, the `rate` is now explicitly set to the acceleration value for improved clarity and consistency.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: cc895612beb7bb224a4d8d1bc03c0d19e76bc213
https://github.com/ehb54/ultrascan3/commit/cc895612beb7bb224a4d8d1bc03c0d19e76bc213
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-17 (Mon, 17 Mar 2025)
Changed paths:
M utils/us_astfem_math.cpp
Log Message:
-----------
Lower debug log level in us_astfem_math.cpp
Changed DbgLv from 1 to 0 for multiple debug statements to reduce verbosity in logs. This adjustment ensures logs are less cluttered while maintaining relevant debug information at a lower level.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 1e20ac5660e5074b951f94b67e8a76c823b42488
https://github.com/ehb54/ultrascan3/commit/1e20ac5660e5074b951f94b67e8a76c823b42488
Author: aaron <aaron at aucsolutions.com>
Date: 2025-03-17 (Mon, 17 Mar 2025)
Changed paths:
M doc/manual/Makefile
M doc/manual/README
A doc/manual/gmp/gmp.body
A doc/manual/gmp/gmp_data_acquisition.body
A doc/manual/gmp/gmp_data_acquisition_experiment.body
A doc/manual/gmp/gmp_data_acquisition_gmp.body
A doc/manual/gmp/gmp_protocol_development.body
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_01.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_02.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_03.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_04.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_05.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_06.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_07.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_08.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_09.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_10.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_11.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_12.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_13.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_14.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_15.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_16.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_17.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_18.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_19.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_20.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_21.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_22.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_23.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_24.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_25.png
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M doc/manual/index.body
M doc/manual/mainstyle.css
M doc/manual/make-html.sh
M doc/manual/manual.qhp
Log Message:
-----------
add gmp data acquisition and protocol development
Commit: 18289ad99ae8af6c78981bfda70aae6e5fbd5ea3
https://github.com/ehb54/ultrascan3/commit/18289ad99ae8af6c78981bfda70aae6e5fbd5ea3
Author: aaron <aaron at aucsolutions.com>
Date: 2025-03-17 (Mon, 17 Mar 2025)
Changed paths:
M doc/manual/gmp/gmp.body
A doc/manual/images/gmp/data_acquisition/gmp/gmp_data_acquisition_gmp_02.png
A doc/manual/images/gmp/data_acquisition/gmp/gmp_data_acquisition_gmp_03.png
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M doc/manual/index.body
Log Message:
-----------
added data acquisition png
Commit: ee16e82880df9cbae84340b5f9a9005e098cc6d3
https://github.com/ehb54/ultrascan3/commit/ee16e82880df9cbae84340b5f9a9005e098cc6d3
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-18 (Tue, 18 Mar 2025)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP-ABDE: 1. EXP.: 5.Solutions -- displaying solutions comments...
Commit: 9e0347842ec2a652e786fd9127d87af2f05001a5
https://github.com/ehb54/ultrascan3/commit/9e0347842ec2a652e786fd9127d87af2f05001a5
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-18 (Tue, 18 Mar 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
GMP-ABDE: 4. EDITING -- [gui fixes for] progress on enabling per-triple modification of the linear baseline corrections vs. per-channel (aka apply to all); ...
Commit: 6c522e623edbf0676f069807a766e0e3a63655b7
https://github.com/ehb54/ultrascan3/commit/6c522e623edbf0676f069807a766e0e3a63655b7
Author: aaron <aaron at aucsolutions.com>
Date: 2025-03-18 (Tue, 18 Mar 2025)
Changed paths:
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A doc/manual/2dsa/2dsa.body
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R doc/manual/2dsa_advan.body
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R doc/manual/2dsa_analys.body
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A doc/manual/experiment/experiment_solutions.body
A doc/manual/experiment/experiment_speeds.body
A doc/manual/experiment/experiment_upload.body
R doc/manual/experiment_cells.body
R doc/manual/experiment_general.body
R doc/manual/experiment_photomult.body
R doc/manual/experiment_rotor.body
R doc/manual/experiment_solutions.body
R doc/manual/experiment_speeds.body
R doc/manual/experiment_upload.body
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R doc/manual/fe_match_controls.body
R doc/manual/fe_match_lddat.body
R doc/manual/fe_match_simulate.body
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M doc/manual/index.body
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R doc/manual/load_model_dis-MID.body
R doc/manual/load_model_distrib.body
R doc/manual/load_noise.body
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M doc/manual/manual.qhp
Log Message:
-----------
added audit trail, signature, and report generator help.
Commit: 1e5517c3d4c26112d469437128daaacf24aad708
https://github.com/ehb54/ultrascan3/commit/1e5517c3d4c26112d469437128daaacf24aad708
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-19 (Wed, 19 Mar 2025)
Changed paths:
M utils/us_simparms.cpp
Log Message:
-----------
Ensure speed_step rollback in case of an incomplete sp_*.xml file
Added logic to revert speed_step to its previous state if the simulation parameters are found to have empty speed steps. This guarantees consistency and prevents invalid simulation states during processing.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 05883c2e6030793142fc626a132d3b7390307787
https://github.com/ehb54/ultrascan3/commit/05883c2e6030793142fc626a132d3b7390307787
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-19 (Wed, 19 Mar 2025)
Changed paths:
M test/utils/CMakeLists.txt
A test/utils/test_us_simparams.cpp
A test/utils/test_us_simparams.h
M test/utils/test_us_utils_main.cpp
Log Message:
-----------
Add unit tests for US_SimulationParameters functionality
This commit introduces comprehensive unit tests for the US_SimulationParameters class, covering various cases for XML parsing, file handling, and data validation. Tests ensure reliability in saving/loading simulation parameters and handling edge scenarios.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: feeac9e23878ebf748ddec14f1b59d9809fb8135
https://github.com/ehb54/ultrascan3/commit/feeac9e23878ebf748ddec14f1b59d9809fb8135
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-19 (Wed, 19 Mar 2025)
Changed paths:
M test/utils/test_us_simparams.h
Log Message:
-----------
Update include directive to correct header file name
Renamed the included file from "us_simparams.h" to "us_simparms.h" to fix a typo in the file name. This change ensures proper file referencing and resolves any potential compilation issues.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 9c0d51ceb1d8c0da9b557ab665b66be31e601d90
https://github.com/ehb54/ultrascan3/commit/9c0d51ceb1d8c0da9b557ab665b66be31e601d90
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-19 (Wed, 19 Mar 2025)
Changed paths:
M utils/CMakeLists.txt
Log Message:
-----------
Add us_simparms files to utils library in CMakeLists.txt
Included `us_simparms.cpp` and `us_simparms.h` in the utils library definition. This ensures these files are compiled and linked correctly as part of the utils library.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: dc37f6d9f6ead541356d5f5339df6ab132fce492
https://github.com/ehb54/ultrascan3/commit/dc37f6d9f6ead541356d5f5339df6ab132fce492
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-19 (Wed, 19 Mar 2025)
Changed paths:
M test/utils/CMakeLists.txt
Log Message:
-----------
Update Qt5 components in test utils CMakeLists.txt
Added Network and Sql components to the Qt5 find_package call. This ensures the necessary Qt5 modules are available for tests that depend on these additional components.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 809f74141edefadff8f75632172b781908c1efc0
https://github.com/ehb54/ultrascan3/commit/809f74141edefadff8f75632172b781908c1efc0
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-19 (Wed, 19 Mar 2025)
Changed paths:
M utils/CMakeLists.txt
Log Message:
-----------
Add MySQL include directories and link libraries to utils
This update integrates MySQL headers and libraries by including their paths in the CMake configuration. It ensures proper compilation and linkage for utils with MySQL dependencies.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 4e33a7c67fdb2939f309be162b4e8827c263e14f
https://github.com/ehb54/ultrascan3/commit/4e33a7c67fdb2939f309be162b4e8827c263e14f
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-19 (Wed, 19 Mar 2025)
Changed paths:
M utils/CMakeLists.txt
Log Message:
-----------
Remove redundant PUBLIC specifier from target_link_libraries
The PUBLIC specifier was unnecessary and has been removed to simplify the code. This change has no functional impact but improves clarity and consistency in the CMake configuration.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 58b733d2ce1a18aee5d6f8e663179c5e10061d0c
https://github.com/ehb54/ultrascan3/commit/58b733d2ce1a18aee5d6f8e663179c5e10061d0c
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-19 (Wed, 19 Mar 2025)
Changed paths:
M CMakeLists.txt
M utils/CMakeLists.txt
Log Message:
-----------
Remove MySQL dependencies and define NO_DB for builds
This commit eliminates hardcoded MySQL include directories and libraries from the utils module, simplifying the build process. Additionally, the NO_DB definition is added to indicate database-related functionalities are disabled. This paves the way for building projects without MySQL support.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 748cc00f2377140ce224a22a77beccdd19f548b9
https://github.com/ehb54/ultrascan3/commit/748cc00f2377140ce224a22a77beccdd19f548b9
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-19 (Wed, 19 Mar 2025)
Changed paths:
M test/utils/test_us_simparams.cpp
Log Message:
-----------
Fix namespace ambiguity for SpeedProfile in test file
Updated the `SpeedProfile` declaration to use the fully qualified `US_SimulationParameters::SpeedProfile` to resolve potential namespace ambiguity. This ensures clarity and correctness in the test code.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: d01b9c7d9856ebc0e4967b7bd2703f7ffbf968a8
https://github.com/ehb54/ultrascan3/commit/d01b9c7d9856ebc0e4967b7bd2703f7ffbf968a8
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-19 (Wed, 19 Mar 2025)
Changed paths:
M utils/CMakeLists.txt
Log Message:
-----------
Update utils library with additional source files and dependencies
Added numerous source and header files to the utils library and linked additional Qt modules (Sql, Network, Xml) and the archive library. Updated include directories to include `/usr/include` and `/usr/include/mysql`. These changes enhance the functionality and compatibility of the utils module.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 07798394ab1b8aa587ed9624fc1b1600a7d06664
https://github.com/ehb54/ultrascan3/commit/07798394ab1b8aa587ed9624fc1b1600a7d06664
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-19 (Wed, 19 Mar 2025)
Changed paths:
M test/utils/test_us_simparams.cpp
Log Message:
-----------
Refactor XML writing and fix test issues
Replaced manual XML string creation with `QXmlStreamWriter` for better readability and maintainability. Fixed typos and improved test assertions to address debug and edge-case issues. Adjusted `speed_step` handling to align with expected behavior in tests.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 0426ae346d05b4905a4e0c5239e779df5fbb3c39
https://github.com/ehb54/ultrascan3/commit/0426ae346d05b4905a4e0c5239e779df5fbb3c39
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-19 (Wed, 19 Mar 2025)
Changed paths:
M test/utils/test_us_simparams.cpp
Log Message:
-----------
Remove debug call from test_us_simparams.
The debug function call was unnecessary and has been removed to clean up the test code. This improves code clarity and reduces noise in the output during test execution.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: d3a9e0d4099f65b91ef36137e1c208eb428b91a2
https://github.com/ehb54/ultrascan3/commit/d3a9e0d4099f65b91ef36137e1c208eb428b91a2
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-19 (Wed, 19 Mar 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Add libarchive-dev to CodeQL build dependencies
The addition of libarchive-dev ensures all necessary libraries are installed for builds during CodeQL analysis. This prevents potential build failures or missing dependencies.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 4f3dac583f4111782277ae083ee53e61de85b506
https://github.com/ehb54/ultrascan3/commit/4f3dac583f4111782277ae083ee53e61de85b506
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-19 (Wed, 19 Mar 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
GMP-ABDE: 4. EDITING -- [accomodate both single- and MWL cases] progress on enabling per-triple modification of the linear baseline corrections vs. per-channel (aka apply to all); ...
Commit: 904a95ffa39e2eda64d9678d2a9f00c26fc96d35
https://github.com/ehb54/ultrascan3/commit/904a95ffa39e2eda64d9678d2a9f00c26fc96d35
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-19 (Wed, 19 Mar 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
GMP-ABDE: 4. EDITING -- bug fixed as to re-attaching to MWVL-to-singleMVL from Run Manager && restoring MWL gui controls ...
Commit: 70b69a99e69a86cd5e2a5ab6d89b4109b6faecdc
https://github.com/ehb54/ultrascan3/commit/70b69a99e69a86cd5e2a5ab6d89b4109b6faecdc
Author: aaron <aaron at aucsolutions.com>
Date: 2025-03-20 (Thu, 20 Mar 2025)
Changed paths:
M doc/manual/2dsa/2dsa.body
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M doc/manual/2dsa/2dsa_analys.body
M doc/manual/astfem_sim.body
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M doc/manual/fe_match/fe_match_controls.body
M doc/manual/fe_match/fe_match_lddat.body
M doc/manual/fe_match/fe_match_simulate.body
M doc/manual/fit_meniscus.body
M doc/manual/ga_initialize.body
M doc/manual/gmp/gmp_audit_trail.body
M doc/manual/gmp/gmp_data_acquisition.body
M doc/manual/gmp/gmp_protocol_development.body
M doc/manual/gmp/gmp_report_generator.body
M doc/manual/gmp/gmp_signature.body
M doc/manual/grid_editor.body
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M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_12.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_13.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_14.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_15.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_16.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_17.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_18.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_19.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_20.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_21.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_22.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_23.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_24.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_25.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_26.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_27.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_28.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_29.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_30.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_31.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_32.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_33.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_34.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_35.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_36.png
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M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_38.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_39.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_40.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_41.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_42.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_43.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_44.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_45.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_46.png
M doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_47.png
M doc/manual/images/gmp/data_acquisition/gmp/gmp_data_acquisition_gmp_01.png
M doc/manual/images/gmp/data_acquisition/gmp/gmp_data_acquisition_gmp_02.png
M doc/manual/images/gmp/data_acquisition/gmp/gmp_data_acquisition_gmp_03.png
M doc/manual/images/gmp/data_acquisition/gmp/gmp_data_acquisition_gmp_04.png
M doc/manual/images/gmp/data_acquisition/gmp/gmp_data_acquisition_gmp_05.png
M doc/manual/images/gmp/data_acquisition/gmp/gmp_data_acquisition_gmp_06.png
M doc/manual/images/gmp/data_acquisition/gmp/gmp_data_acquisition_gmp_07.png
M doc/manual/images/gmp/data_acquisition/gmp/gmp_data_acquisition_gmp_08.png
M doc/manual/images/gmp/data_acquisition/gmp/gmp_data_acquisition_gmp_09.png
M doc/manual/images/gmp/data_acquisition/gmp/gmp_data_acquisition_gmp_10.png
M doc/manual/images/gmp/data_acquisition/gmp/gmp_data_acquisition_gmp_11.png
M doc/manual/images/gmp/data_acquisition/gmp/gmp_data_acquisition_gmp_12.png
M doc/manual/images/gmp/data_acquisition/gmp/gmp_data_acquisition_gmp_13.png
M doc/manual/images/gmp/data_acquisition/gmp_data_acquisition_01.png
M doc/manual/images/gmp/data_acquisition/gmp_data_acquisition_02.png
M doc/manual/images/gmp/data_acquisition/gmp_data_acquisition_03.png
M doc/manual/images/gmp/gmp.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_01.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_02.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_03.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_04.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_05.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_06.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_07.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_08.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_09.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_10.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_11.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_12.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_13.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_14.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_15.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_16.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_17.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_18.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_19.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_20.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_21.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_22.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_23.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_24.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_25.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_26.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_27.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_28.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_29.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_30.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_31.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_32.png
R doc/manual/images/gmp/protocol_development/Protocol_Development_33.png
M doc/manual/images/gmp/report_generator/gmp_report_generator_01.png
M doc/manual/images/gmp/report_generator/gmp_report_generator_04.png
M doc/manual/images/gmp/report_generator/gmp_report_generator_05.png
M doc/manual/images/gmp/signature/gmp_signature_01.png
M doc/manual/images/gmp/signature/gmp_signature_03.png
M doc/manual/images/gmp/signature/gmp_signature_04.png
M doc/manual/images/gmp/signature/gmp_signature_05.png
A doc/manual/images/sassoc/sassoc_01.png
A doc/manual/images/sassoc/sassoc_02.png
A doc/manual/images/somo/somo_icon.png
M doc/manual/load/load_colormap.body
M doc/manual/load/load_model_dis-MID.body
M doc/manual/load/load_noise_details.body
M doc/manual/manage_data.body
M doc/manual/manage_data_cmenu.body
M doc/manual/manage_data_thelp.body
M doc/manual/manual.qhp
M doc/manual/mwlr_view_load.body
M doc/manual/mwlr_viewer.body
M doc/manual/pcsa.body
M doc/manual/pcsa_analys.body
M doc/manual/pcsa_mlines.body
M doc/manual/pcsa_rpscan.body
M doc/manual/pseudo3d_combine.body
M doc/manual/register.body
M doc/manual/reporter.body
A doc/manual/sassoc.body
M doc/manual/second_moment.body
M doc/manual/simparams.body
A doc/manual/somo.body
M doc/manual/time_derivative.body
M doc/manual/us_fds_filemanager.body
M doc/manual/vhw_combine.body
M doc/manual/vhw_distrib_plot.body
M doc/manual/vhw_enhanced.body
Log Message:
-----------
add sassoc and somo and put <p/> around image tags.
Commit: fa20b4efbeff32a9659fe4acc61db13ab59af30d
https://github.com/ehb54/ultrascan3/commit/fa20b4efbeff32a9659fe4acc61db13ab59af30d
Author: aaron <aaron at aucsolutions.com>
Date: 2025-03-20 (Thu, 20 Mar 2025)
Changed paths:
A doc/manual/images/gmp/protocol_development/protocol_development_01.png
A doc/manual/images/gmp/protocol_development/protocol_development_02.png
A doc/manual/images/gmp/protocol_development/protocol_development_03.png
A doc/manual/images/gmp/protocol_development/protocol_development_04.png
A doc/manual/images/gmp/protocol_development/protocol_development_05.png
A doc/manual/images/gmp/protocol_development/protocol_development_06.png
A doc/manual/images/gmp/protocol_development/protocol_development_07.png
A doc/manual/images/gmp/protocol_development/protocol_development_08.png
A doc/manual/images/gmp/protocol_development/protocol_development_09.png
A doc/manual/images/gmp/protocol_development/protocol_development_10.png
A doc/manual/images/gmp/protocol_development/protocol_development_11.png
A doc/manual/images/gmp/protocol_development/protocol_development_12.png
A doc/manual/images/gmp/protocol_development/protocol_development_13.png
A doc/manual/images/gmp/protocol_development/protocol_development_14.png
A doc/manual/images/gmp/protocol_development/protocol_development_15.png
A doc/manual/images/gmp/protocol_development/protocol_development_16.png
A doc/manual/images/gmp/protocol_development/protocol_development_17.png
A doc/manual/images/gmp/protocol_development/protocol_development_18.png
A doc/manual/images/gmp/protocol_development/protocol_development_19.png
A doc/manual/images/gmp/protocol_development/protocol_development_20.png
A doc/manual/images/gmp/protocol_development/protocol_development_21.png
A doc/manual/images/gmp/protocol_development/protocol_development_22.png
A doc/manual/images/gmp/protocol_development/protocol_development_23.png
A doc/manual/images/gmp/protocol_development/protocol_development_24.png
A doc/manual/images/gmp/protocol_development/protocol_development_25.png
A doc/manual/images/gmp/protocol_development/protocol_development_26.png
A doc/manual/images/gmp/protocol_development/protocol_development_27.png
A doc/manual/images/gmp/protocol_development/protocol_development_28.png
A doc/manual/images/gmp/protocol_development/protocol_development_29.png
A doc/manual/images/gmp/protocol_development/protocol_development_30.png
A doc/manual/images/gmp/protocol_development/protocol_development_31.png
A doc/manual/images/gmp/protocol_development/protocol_development_32.png
A doc/manual/images/gmp/protocol_development/protocol_development_33.png
Log Message:
-----------
add use lowercase on image names
Commit: 287c91009921e39295d8dbd045b6701036fc8e39
https://github.com/ehb54/ultrascan3/commit/287c91009921e39295d8dbd045b6701036fc8e39
Author: aaron <aaron at aucsolutions.com>
Date: 2025-03-20 (Thu, 20 Mar 2025)
Changed paths:
M doc/manual/Makefile
M doc/manual/make-wraps.sh
Log Message:
-----------
create html from wrapped-list
Commit: fd700352a45226b0da7a733e268a08635fc6070f
https://github.com/ehb54/ultrascan3/commit/fd700352a45226b0da7a733e268a08635fc6070f
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-21 (Fri, 21 Mar 2025)
Changed paths:
M programs/us_2dsa/us_2dsa.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
Allow less delay between acceleration end and first scan
The previous calculation relied on an overestimated acceleration rate in the speed step resulting in an offset of -3 for the scan timing based on experimental observations. The updated calculation for the timestate makes this correction obsolete. In order to keep not suddenly display errors for older data, the offset of +1 is applied due to making tf_aend a double instead of an integer avoiding potential rounding issues.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 71ae863185de5258ef5278c458039cd111bbeeb9
https://github.com/ehb54/ultrascan3/commit/71ae863185de5258ef5278c458039cd111bbeeb9
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-21 (Fri, 21 Mar 2025)
Changed paths:
A doc/calc_timestate_documentation.pdf
Log Message:
-----------
Add calc_timestate_documentation.pdf
Include documentation detailing the calculation of timestate functionality.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 3d26140d83e2dd3feb2ffd3c2c3ab97d002c0580
https://github.com/ehb54/ultrascan3/commit/3d26140d83e2dd3feb2ffd3c2c3ab97d002c0580
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-21 (Fri, 21 Mar 2025)
Changed paths:
M programs/us_convert/us_convert.cpp
Log Message:
-----------
Update time offset calculation comment with documentation reference
Added a reference to detailed documentation for the time and omega^2t offset calculation process. This improves code clarity and provides additional context for future developers.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: 25a0b68c911eb5456f91e2e26160ca80a7dd1822
https://github.com/ehb54/ultrascan3/commit/25a0b68c911eb5456f91e2e26160ca80a7dd1822
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-03-21 (Fri, 21 Mar 2025)
Changed paths:
A doc/calc_model_coefficient_documentation.pdf
R utils/calc_coefficient_documentation.pdf
M utils/us_model.cpp
Log Message:
-----------
Update coefficient documentation reference and relocate file
Updated comments to reference the new path for the coefficient documentation file. Relocated the file from `utils` to the `doc` directory for better organization.
Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>
Commit: a5b95158ed1ac65a8123e49d81501eafbcce37bf
https://github.com/ehb54/ultrascan3/commit/a5b95158ed1ac65a8123e49d81501eafbcce37bf
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-03-21 (Fri, 21 Mar 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
M CMakeLists.txt
M test/utils/CMakeLists.txt
A test/utils/test_us_simparams.cpp
A test/utils/test_us_simparams.h
M test/utils/test_us_utils_main.cpp
M utils/CMakeLists.txt
M utils/us_simparms.cpp
Log Message:
-----------
Merge pull request #189 from ehb54/lukas/us_astfem_sim_empty_simparams
Prevent missing speed steps in simulation parameters file from crashing applications
Commit: 1f81945e1f1214104abbb6b6f01441085ad6de3a
https://github.com/ehb54/ultrascan3/commit/1f81945e1f1214104abbb6b6f01441085ad6de3a
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-03-21 (Fri, 21 Mar 2025)
Changed paths:
A doc/calc_model_coefficient_documentation.pdf
A doc/calc_timestate_documentation.pdf
M gui/us_buffer_gui.cpp
M gui/us_buffer_gui.h
M gui/us_model_gui.cpp
M gui/us_model_gui.h
M gui/us_rotor_gui.cpp
M gui/us_rotor_gui.h
M gui/us_sim_params_gui.cpp
M gui/us_sim_params_gui.h
M programs/us_2dsa/us_2dsa.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_astfem_sim/us_astfem_sim.h
M programs/us_astfem_sim/us_clipdata.h
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_convert/us_convert.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
R utils/calc_coefficient_documentation.pdf
M utils/us_astfem_math.cpp
M utils/us_model.cpp
Log Message:
-----------
Merge pull request #175 from ehb54/lukas/us_astfem_sim_timestate
US Simulation Module Fix/Enhancement
Commit: 49cb060af6151ba2cd4b6fd368cca8e6d8d6541c
https://github.com/ehb54/ultrascan3/commit/49cb060af6151ba2cd4b6fd368cca8e6d8d6541c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-23 (Sun, 23 Mar 2025)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M utils/us_ana_profile.cpp
Log Message:
-----------
GMP: PCSA-MC settings & reporting -- force #MC iters to 100 in AProfile for PCSA workflow; in GMP report, analyse, report and label correspondingly the last PSCA model produced (-MC by workflow construct); ...
Commit: aaf9d8e9266a23672860160c21a8f559501de1cc
https://github.com/ehb54/ultrascan3/commit/aaf9d8e9266a23672860160c21a8f559501de1cc
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-26 (Wed, 26 Mar 2025)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.h
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
Log Message:
-----------
GMP-ABDE: -- switch to the to-be analysis stage; proper ending of editing ...
Commit: 68acf2c658df1cee16ca38711fd32362de481496
https://github.com/ehb54/ultrascan3/commit/68acf2c658df1cee16ca38711fd32362de481496
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-27 (Thu, 27 Mar 2025)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
Log Message:
-----------
GMP-Audit-trail: -- misspelling fixed ...
Commit: 56cf620d03f05f1182b86adb0c04052d85563eee
https://github.com/ehb54/ultrascan3/commit/56cf620d03f05f1182b86adb0c04052d85563eee
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-27 (Thu, 27 Mar 2025)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
Log Message:
-----------
GMP-Audit-trail: -- misspelling fixed ...
Commit: d97cfb1f114e56cd09906421fd8f5fc6f3a2d3db
https://github.com/ehb54/ultrascan3/commit/d97cfb1f114e56cd09906421fd8f5fc6f3a2d3db
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-27 (Thu, 27 Mar 2025)
Changed paths:
M programs/us_fematch/us_fematch.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP-Report & fematch: -- report: do not show dot/bar plots; us_fematch: do not display dot plots ...
Commit: d4b44f55a16b313817769261015b973693eaaffa
https://github.com/ehb54/ultrascan3/commit/d4b44f55a16b313817769261015b973693eaaffa
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-27 (Thu, 27 Mar 2025)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
Log Message:
-----------
GMP-Report Comb. & pseudo Plots: -- reduce title sizes in the underlying programs ...
Commit: 4756a61800d1751881cb3cab62725a0fe7508bfd
https://github.com/ehb54/ultrascan3/commit/4756a61800d1751881cb3cab62725a0fe7508bfd
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-27 (Thu, 27 Mar 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP-Report Comb. & pseudo Plots: -- also playing with scaling factors depending on qprinet settings ...
Commit: 6d39f57d5eec59b5646f60b6d1c4c97b139e4373
https://github.com/ehb54/ultrascan3/commit/6d39f57d5eec59b5646f60b6d1c4c97b139e4373
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-03-27 (Thu, 27 Mar 2025)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
Log Message:
-----------
Merge pull request #192 from ehb54/alexey-dev-issue444
GMP-Audit-trail: -- misspelling fixed 'Audir trail'...
Commit: f7c02bfb100afb53049fbabc7d2f7fb26139d09c
https://github.com/ehb54/ultrascan3/commit/f7c02bfb100afb53049fbabc7d2f7fb26139d09c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-28 (Fri, 28 Mar 2025)
Changed paths:
M gui/us_data_loader.cpp
M gui/us_data_loader.h
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.h
M programs/us_autoflow_analysis/us_autoflow_analysis.pro
M programs/us_com_project/us_com_project.pro
M programs/us_com_project_academic/us_com_project_academic.pro
M programs/us_fematch/us_fematch.pro
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.h
M programs/us_mwl_species_fit/us_mwl_species_fit.pro
A programs/us_mwl_species_fit/us_mwl_species_fit_main.cpp
M programs/us_protocol_dev/us_protocol_dev.pro
M programs/us_query_rmsd/us_query_rmsd.pro
M programs/us_reporter_gmp/us_reporter_gmp.pro
M programs/us_xpn_viewer/us_xpn_viewer.pro
Log Message:
-----------
GMP-ABDE: -- prep. steps for [AUTO]MWL-decomposition ...
Commit: a909a2130600602250ff2c7d241264159790492f
https://github.com/ehb54/ultrascan3/commit/a909a2130600602250ff2c7d241264159790492f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-28 (Fri, 28 Mar 2025)
Changed paths:
M gui/us_data_loader.cpp
M gui/us_data_loader.h
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
Log Message:
-----------
GMP-ABDE: -- further steps for [AUTO]MWL-decomposition ...
Commit: ae4ba13e505f34049dad4698cd8c3b2b30df0282
https://github.com/ehb54/ultrascan3/commit/ae4ba13e505f34049dad4698cd8c3b2b30df0282
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-03-28 (Fri, 28 Mar 2025)
Changed paths:
M gui/us_buffer_gui.cpp
M gui/us_buffer_gui.h
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M programs/us_predict2/us_predict2.cpp
M utils/us_model.cpp
M utils/us_model.h
Log Message:
-----------
Merge pull request #178 from samo38/grid_editor
Grid editor
Commit: bb94f12668e9b771a610129c554281dabc4f93c6
https://github.com/ehb54/ultrascan3/commit/bb94f12668e9b771a610129c554281dabc4f93c6
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-03-28 (Fri, 28 Mar 2025)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
Merge pull request #190 from ehb54/alexey-dev-issue426
GMP-ABDE: 1. EXP.: 5.Solutions -- displaying solutions comments...
Commit: bc3f9f1ec0ee1be138b0e5b25f1085eb26e942ef
https://github.com/ehb54/ultrascan3/commit/bc3f9f1ec0ee1be138b0e5b25f1085eb26e942ef
Author: aaron <aaron at aucsolutions.com>
Date: 2025-03-29 (Sat, 29 Mar 2025)
Changed paths:
M doc/manual/manage_data.body
Log Message:
-----------
#440 remove unreferenced help in managed data
Commit: f58a736dc81a33618eb20a9ec08e9a607fe66f94
https://github.com/ehb54/ultrascan3/commit/f58a736dc81a33618eb20a9ec08e9a607fe66f94
Author: aaron <aaron at aucsolutions.com>
Date: 2025-03-29 (Sat, 29 Mar 2025)
Changed paths:
M doc/manual/convert.body
A doc/manual/images/us_convert/us_convert_01.png
A doc/manual/images/us_convert/us_convert_02.png
A doc/manual/images/us_convert/us_convert_03.png
A doc/manual/images/us_convert/us_convert_04.png
A doc/manual/images/us_convert/us_convert_05.png
A doc/manual/images/us_convert/us_convert_06.png
A doc/manual/images/us_convert/us_convert_07.png
A doc/manual/images/us_convert/us_convert_08.png
A doc/manual/images/us_convert/us_convert_09.png
A doc/manual/images/us_convert/us_convert_10.png
A doc/manual/images/us_convert/us_convert_11.png
A doc/manual/images/us_convert/us_convert_12.png
A doc/manual/images/us_convert/us_convert_13.png
A doc/manual/images/us_convert/us_convert_14.png
M doc/manual/manual.qhp
Log Message:
-----------
updated convert
Commit: 538c4d8271a9ace7983fc72da38a1e5af89dfafa
https://github.com/ehb54/ultrascan3/commit/538c4d8271a9ace7983fc72da38a1e5af89dfafa
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-03-31 (Mon, 31 Mar 2025)
Changed paths:
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_mpi_analysis/us_mpi_analysis.h
Log Message:
-----------
us_mpi_analysis: add variance_mc_combined to calculate the variance of MC combined model
Commit: c233d74dcd0744e41d861f7071eab64d08919d86
https://github.com/ehb54/ultrascan3/commit/c233d74dcd0744e41d861f7071eab64d08919d86
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-03-31 (Mon, 31 Mar 2025)
Changed paths:
M programs/us_fematch/us_fematch.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
Merge pull request #193 from ehb54/alexey-dev-issue446
GMP-Report & fematch: -- report: do not show dot/bar plots; us_fematch: do not display dor plots
Commit: 5a7280eadbf62110f18d3edc6dad501f2dbc0ed4
https://github.com/ehb54/ultrascan3/commit/5a7280eadbf62110f18d3edc6dad501f2dbc0ed4
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-03-31 (Mon, 31 Mar 2025)
Changed paths:
M gui/us_data_loader.cpp
M programs/us_edit/us_edit.cpp
M programs/us_mwl_species_fit/us_load_run_noise.cpp
M programs/us_mwl_species_fit/us_load_run_noise.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.h
Log Message:
-----------
GMP-ABDE: -- (1) bug fixed in EDIT as for exclusion of all but last scan for each triple; (2) more work on porting MWL species deconv. into GMP-ABDE's ANALYSIS stage...
Commit: 98f8be40832b0ce57fef6e32c2024f711e9259d6
https://github.com/ehb54/ultrascan3/commit/98f8be40832b0ce57fef6e32c2024f711e9259d6
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-04-01 (Tue, 01 Apr 2025)
Changed paths:
M gui/us_buffer_gui.cpp
M gui/us_buffer_gui.h
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M programs/us_predict2/us_predict2.cpp
Log Message:
-----------
I reverted the signal BufferDataChanged to what it was before i.e. valueChanged. So we have two signals with the same name valueChanged but one emits US_Buffer and the other emits two double values. We have to use SIGNAL and SLOT macros to handle the casting, otherwise you get errors at compilation step if you connect it through function reference.
Commit: 32cabd46de2e426ca43a909949109b82e383358d
https://github.com/ehb54/ultrascan3/commit/32cabd46de2e426ca43a909949109b82e383358d
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-04-01 (Tue, 01 Apr 2025)
Changed paths:
M gui/us_buffer_gui.cpp
M gui/us_buffer_gui.h
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M programs/us_predict2/us_predict2.cpp
Log Message:
-----------
Merge pull request #196 from samo38/issue_447
Ticket 447: Master branch build failing
Commit: 22fae8ad5b8d7a72d1cadcdec6f7e63188b31eb7
https://github.com/ehb54/ultrascan3/commit/22fae8ad5b8d7a72d1cadcdec6f7e63188b31eb7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-04-01 (Tue, 01 Apr 2025)
Changed paths:
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
Log Message:
-----------
GMP-Report Comb. & pseudo Plots: -- for future use explicitly set arial-10 font ...
Commit: 9b1f60a54ddb46ae3d84e0cb8585deee6ca24f58
https://github.com/ehb54/ultrascan3/commit/9b1f60a54ddb46ae3d84e0cb8585deee6ca24f58
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-04-01 (Tue, 01 Apr 2025)
Changed paths:
M gui/us_buffer_gui.cpp
M gui/us_buffer_gui.h
M programs/us_fematch/us_fematch.cpp
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M programs/us_predict2/us_predict2.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
Merge remote-tracking branch 'upstream/master' into issue_mc_rmsd_391
Commit: 7b5fb9bf1e8687feb4b07f69e652fef0f6c2f556
https://github.com/ehb54/ultrascan3/commit/7b5fb9bf1e8687feb4b07f69e652fef0f6c2f556
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-04-01 (Tue, 01 Apr 2025)
Changed paths:
M utils/us_model.cpp
Log Message:
-----------
us_model.cpp: report the table variance instead of the xml file variance if the model type is MC
Commit: 393be4ba848a58c5ca53268b0598b22cecd1d8a6
https://github.com/ehb54/ultrascan3/commit/393be4ba848a58c5ca53268b0598b22cecd1d8a6
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-04-01 (Tue, 01 Apr 2025)
Changed paths:
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_mpi_analysis/us_mpi_analysis.h
Log Message:
-----------
us_mpi_analysis: rename variance_mc_combined function to rmsd_combined_mc_models
Commit: 37a603409bfa0487097e0e2068dc1f6ff0084805
https://github.com/ehb54/ultrascan3/commit/37a603409bfa0487097e0e2068dc1f6ff0084805
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-04-01 (Tue, 01 Apr 2025)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.h
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- automated deconvolution for MWL data...
Commit: 53c9cfb31ff4d24bf7e0a42872b76219b8261789
https://github.com/ehb54/ultrascan3/commit/53c9cfb31ff4d24bf7e0a42872b76219b8261789
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-04-02 (Wed, 02 Apr 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
M CMakeLists.txt
A doc/calc_model_coefficient_documentation.pdf
A doc/calc_timestate_documentation.pdf
M gui/us_buffer_gui.cpp
M gui/us_buffer_gui.h
M gui/us_model_gui.cpp
M gui/us_model_gui.h
M gui/us_rotor_gui.cpp
M gui/us_rotor_gui.h
M gui/us_sim_params_gui.cpp
M gui/us_sim_params_gui.h
M programs/us_2dsa/us_2dsa.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_astfem_sim/us_astfem_sim.h
M programs/us_astfem_sim/us_clipdata.h
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_config/us_database.cpp
M programs/us_convert/us_convert.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_fematch/us_fematch.cpp
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M test/utils/CMakeLists.txt
A test/utils/test_us_simparams.cpp
A test/utils/test_us_simparams.h
M test/utils/test_us_utils_main.cpp
M utils/CMakeLists.txt
R utils/calc_coefficient_documentation.pdf
M utils/us_astfem_math.cpp
M utils/us_model.cpp
M utils/us_model.h
M utils/us_simparms.cpp
Log Message:
-----------
Merge pull request #198 from ehb54/master
Update Feature Branch
Commit: 6511a035825ebcbc6b1b31b85b20e8db10460a36
https://github.com/ehb54/ultrascan3/commit/6511a035825ebcbc6b1b31b85b20e8db10460a36
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-04-02 (Wed, 02 Apr 2025)
Changed paths:
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_mpi_analysis/us_mpi_analysis.h
M utils/us_model.cpp
Log Message:
-----------
Merge pull request #197 from samo38/issue_mc_rmsd_391
ticket 391: us_fematch MC rmsd
Commit: 20bc98cbd0c9e6ebe3dab715d121df46a52d5fcc
https://github.com/ehb54/ultrascan3/commit/20bc98cbd0c9e6ebe3dab715d121df46a52d5fcc
Author: aaron <aaron at aucsolutions.com>
Date: 2025-04-02 (Wed, 02 Apr 2025)
Changed paths:
M doc/manual/manual.qhp
Log Message:
-----------
added additional index fields
Commit: e85004ebe04cc4e5bcac416638363b50c624dfaa
https://github.com/ehb54/ultrascan3/commit/e85004ebe04cc4e5bcac416638363b50c624dfaa
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-04-02 (Wed, 02 Apr 2025)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.h
M utils/us_dataIO.cpp
M utils/us_dataIO.h
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- apply extinction profiles from DB (protocol) for each analyte (and buffer if specified); read and apply linear base-line corrections for each triple from edit profiles; && loop over triples & deconvolute...
Commit: 16f83a88ccafb90a5ae28bdfbd2302738f592776
https://github.com/ehb54/ultrascan3/commit/16f83a88ccafb90a5ae28bdfbd2302738f592776
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-04-03 (Thu, 03 Apr 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
A CITATION.cff
M CMakeLists.txt
A doc/calc_model_coefficient_documentation.pdf
A doc/calc_timestate_documentation.pdf
M gui/us_buffer_gui.cpp
M gui/us_buffer_gui.h
M gui/us_extinction_gui.cpp
M gui/us_model_gui.cpp
M gui/us_model_gui.h
M gui/us_rotor_gui.cpp
M gui/us_rotor_gui.h
M gui/us_select_item.cpp
M gui/us_select_item.h
M gui/us_sim_params_gui.cpp
M gui/us_sim_params_gui.h
M programs/us_2dsa/us_2dsa.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_astfem_sim/us_astfem_sim.h
M programs/us_astfem_sim/us_clipdata.h
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_config/us_database.cpp
M programs/us_config/us_database.h
M programs/us_convert/us_convert.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_fematch/us_fematch.cpp
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_mpi_analysis/us_mpi_analysis.h
R programs/us_mwl_db_query/us_mwl_db_query.pro
R programs/us_mwl_db_query/us_mwl_pltctrl.cpp
R programs/us_mwl_db_query/us_mwl_pltctrl.h
R programs/us_mwl_db_query/us_mwl_run.cpp
R programs/us_mwl_db_query/us_mwl_run.h
R programs/us_mwl_db_query/us_mwlr_viewer.cpp
R programs/us_mwl_db_query/us_mwlr_viewer.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M test/utils/CMakeLists.txt
A test/utils/test_us_simparams.cpp
A test/utils/test_us_simparams.h
M test/utils/test_us_utils_main.cpp
M utils/CMakeLists.txt
R utils/calc_coefficient_documentation.pdf
M utils/us_astfem_math.cpp
M utils/us_model.cpp
M utils/us_model.h
M utils/us_simparms.cpp
Log Message:
-----------
Merge pull request #199 from ehb54/master
Merge current master to alexey-dev-ussue425
Commit: 5e45e203a53206ff829c003d99daea34b0c249fc
https://github.com/ehb54/ultrascan3/commit/5e45e203a53206ff829c003d99daea34b0c249fc
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-04-03 (Thu, 03 Apr 2025)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.h
M programs/us_autoflow_analysis/us_autoflow_analysis.pro
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_fematch/us_fematch.pro
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_query_rmsd/us_query_rmsd.pro
M programs/us_reporter_gmp/us_reporter_gmp.pro
M programs/us_xpn_viewer/us_xpn_viewer.pro
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- generated SSF data after MWL-deconv. are now auto-saved into DB as a separate records...
Commit: b0112a373e29c51f8ba74849d5b0127d9d8978ad
https://github.com/ehb54/ultrascan3/commit/b0112a373e29c51f8ba74849d5b0127d9d8978ad
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-04-04 (Fri, 04 Apr 2025)
Changed paths:
M programs/us_abde/us_abde_main.cpp
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.h
M programs/us_autoflow_analysis/us_autoflow_analysis.pro
M programs/us_com_project/us_com_project.pro
M programs/us_com_project_academic/us_com_project_academic.pro
M programs/us_convert/us_convert_gui.cpp
M programs/us_fematch/us_fematch.pro
M programs/us_protocol_dev/us_protocol_dev.pro
M programs/us_query_rmsd/us_query_rmsd.pro
M programs/us_reporter_gmp/us_reporter_gmp.pro
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- port stand-alone abde normalizer to GMP framework; auto-upload deconv. data from previos mwl-spiecies-fit...
Commit: df97ae010819972a48b354ec9f27be28c1c125a3
https://github.com/ehb54/ultrascan3/commit/df97ae010819972a48b354ec9f27be28c1c125a3
Author: aaron <aaron at aucsolutions.com>
Date: 2025-04-06 (Sun, 06 Apr 2025)
Changed paths:
M doc/manual/config2.body
M doc/manual/load/load_auc.body
M doc/manual/us_edit.body
M doc/manual/us_edit_mwl.body
M doc/manual/uscolor2.body
Log Message:
-----------
fix spacing
Commit: 6f8030ed010388aeadefa0400830c7528296b1a9
https://github.com/ehb54/ultrascan3/commit/6f8030ed010388aeadefa0400830c7528296b1a9
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-04-07 (Mon, 07 Apr 2025)
Changed paths:
M programs/us_2dsa/us_2dsa.cpp
Log Message:
-----------
us_2dsa: save the mc models properly. simulate the final mc combined model to get the right rmsd
Commit: 299f8cd9acc11a5e3dbd8b3fbf5bae14b602801d
https://github.com/ehb54/ultrascan3/commit/299f8cd9acc11a5e3dbd8b3fbf5bae14b602801d
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-04-08 (Tue, 08 Apr 2025)
Changed paths:
M programs/us_2dsa/us_2dsa.cpp
Log Message:
-----------
Merge pull request #200 from samo38/issue_mc_rmsd_gui_391
2DSA GUI program. MC rmsd mismatch
Commit: fd5c80d8177c74905ced72a499d1ba162873b16d
https://github.com/ehb54/ultrascan3/commit/fd5c80d8177c74905ced72a499d1ba162873b16d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-04-08 (Tue, 08 Apr 2025)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_experiment.cpp
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- supress all msgs related to DB-save of SSF data in case of already saved...
Commit: 66b456db36e56b38857266164eb4f6fe56dbce6d
https://github.com/ehb54/ultrascan3/commit/66b456db36e56b38857266164eb4f6fe56dbce6d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-04-09 (Wed, 09 Apr 2025)
Changed paths:
M programs/us_abde/us_abde_main.cpp
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- prep. for channel-by-channel processing in the normalizer program...
Commit: d98c3484a15df726b143465f2bfbfcf71959a18a
https://github.com/ehb54/ultrascan3/commit/d98c3484a15df726b143465f2bfbfcf71959a18a
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-04-11 (Fri, 11 Apr 2025)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.h
M programs/us_mwl_species_fit/us_mwl_species_fit.pro
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_xpn_viewer/us_xpn_viewer.pro
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- pass ranges set in reportItems for each channels into normalizer program...
Commit: b8fd3f2af0439580645406317db45930ada16282
https://github.com/ehb54/ultrascan3/commit/b8fd3f2af0439580645406317db45930ada16282
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-04-15 (Tue, 15 Apr 2025)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP-Report Comb. & pseudo Plots: -- fix aspect ratio for combined plots && disable global min/max params from AProfile and use max models ranges...
Commit: 8effa2c84fdaeb40b0a5c07c3a74621390305dcb
https://github.com/ehb54/ultrascan3/commit/8effa2c84fdaeb40b0a5c07c3a74621390305dcb
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-04-15 (Tue, 15 Apr 2025)
Changed paths:
M gui/us_buffer_gui.cpp
M programs/us_2dsa/us_2dsa.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_fematch/us_fematch.cpp
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_mpi_analysis/us_mpi_analysis.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M utils/us_model.cpp
M utils/us_model.h
Log Message:
-----------
Merge pull request #202 from ehb54/master
merge master into alexey-dev-issue445
Commit: 9a2d9cecefa7068cace70b02f3531b42852c08fd
https://github.com/ehb54/ultrascan3/commit/9a2d9cecefa7068cace70b02f3531b42852c08fd
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-04-15 (Tue, 15 Apr 2025)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
Log Message:
-----------
GMP-Report Comb. & pseudo Plots: -- treat individual combo-plots & overall combined plots differently: for ind. plots use protocol's ranges...
Commit: f9910dacb3c930d3d8eb35a472f979a0c38dea31
https://github.com/ehb54/ultrascan3/commit/f9910dacb3c930d3d8eb35a472f979a0c38dea31
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-04-15 (Tue, 15 Apr 2025)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
Log Message:
-----------
GMP-Report Comb. & pseudo Plots: -- TEST treat individual combo-plots & overall combined plots differently: for ind. plots use protocol's ranges...
Commit: a194719493877073ac5bfbf6abd60196033c213a
https://github.com/ehb54/ultrascan3/commit/a194719493877073ac5bfbf6abd60196033c213a
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-04-15 (Tue, 15 Apr 2025)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
Log Message:
-----------
GMP-Report Comb. & pseudo Plots: -- bug fixed ...
Commit: e86907bc294246fd003087d59cac1a1a374571c9
https://github.com/ehb54/ultrascan3/commit/e86907bc294246fd003087d59cac1a1a374571c9
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-04-16 (Wed, 16 Apr 2025)
Changed paths:
M admin/us_branch/us_branch.php
Log Message:
-----------
us_branch.php - install assistant
Commit: 15f183a8d2720869d37d335cbf44807d386db3e8
https://github.com/ehb54/ultrascan3/commit/15f183a8d2720869d37d335cbf44807d386db3e8
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-04-16 (Wed, 16 Apr 2025)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
Log Message:
-----------
us_legacy_converter: detect scan replicas, averge them out, and then hint the user about it
Commit: e9f7739d31649a9a24b26e0f219d9ceb6205786e
https://github.com/ehb54/ultrascan3/commit/e9f7739d31649a9a24b26e0f219d9ceb6205786e
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-04-16 (Wed, 16 Apr 2025)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
Log Message:
-----------
us_legacy_converter: improve the message box for scan replicates
Commit: d85b46f39bf6963d3384435e44fc077c0230e5c1
https://github.com/ehb54/ultrascan3/commit/d85b46f39bf6963d3384435e44fc077c0230e5c1
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-04-16 (Wed, 16 Apr 2025)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
Log Message:
-----------
us_legacy_converter: update the parsing message
Commit: c010a00a91549c696df14ac089951019d8dc9d1a
https://github.com/ehb54/ultrascan3/commit/c010a00a91549c696df14ac089951019d8dc9d1a
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-04-16 (Wed, 16 Apr 2025)
Changed paths:
M admin/us_branch/us_branch.php
Log Message:
-----------
Merge pull request #203 from ehb54/ehb-issue-459
us_branch.php - install assistant
Commit: 80dbd6cf853053d05980c8a7504e4c3a123756e5
https://github.com/ehb54/ultrascan3/commit/80dbd6cf853053d05980c8a7504e4c3a123756e5
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-04-17 (Thu, 17 Apr 2025)
Changed paths:
M admin/us_branch/us_branch.php
M gui/us_buffer_gui.cpp
M programs/us_2dsa/us_2dsa.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_fematch/us_fematch.cpp
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_mpi_analysis/us_mpi_analysis.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M utils/us_model.cpp
M utils/us_model.h
Log Message:
-----------
Merge pull request #205 from ehb54/master
merge master into alexey-dev-issue360
Commit: 6ebee479acbdd6d7b77b174c9733e2dc7785b4b7
https://github.com/ehb54/ultrascan3/commit/6ebee479acbdd6d7b77b174c9733e2dc7785b4b7
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-04-17 (Thu, 17 Apr 2025)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M utils/us_ana_profile.cpp
Log Message:
-----------
Merge pull request #191 from ehb54/alexey-dev-issue360
GMP: PCSA-MC settings & reporting -- force #MC iters to 100 in AProfile, and report/analyse PSCA-MC in GMP report
Commit: 8af3125ae8dce3a21d505d51b94a0053b0727442
https://github.com/ehb54/ultrascan3/commit/8af3125ae8dce3a21d505d51b94a0053b0727442
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-04-17 (Thu, 17 Apr 2025)
Changed paths:
M gui/us_select_item.cpp
Log Message:
-----------
GMP / R&D Run Manager -- rename 'Delete Record' to 'Remove for the List' button to ease people's feeling :)...
Commit: 6d1af35fa21416f940f1c605e3a49e839f486f12
https://github.com/ehb54/ultrascan3/commit/6d1af35fa21416f940f1c605e3a49e839f486f12
Author: aaron <aaron at aucsolutions.com>
Date: 2025-04-17 (Thu, 17 Apr 2025)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.h
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
add help for esigner and us_reporter_gmp
Commit: 9d4eb317df42ef894e6e3902b4bed37000e90f93
https://github.com/ehb54/ultrascan3/commit/9d4eb317df42ef894e6e3902b4bed37000e90f93
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-04-17 (Thu, 17 Apr 2025)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
M utils/us_ana_profile.cpp
Log Message:
-----------
GMP-Report Comb. & pseudo Plots: -- general comb-plot settings: default S_min/max=0, meaning use autolscale; otherwise when set manually, use those ranges...
Commit: 694971d9a2398d7b82c595363ab514f6d6f899be
https://github.com/ehb54/ultrascan3/commit/694971d9a2398d7b82c595363ab514f6d6f899be
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-04-17 (Thu, 17 Apr 2025)
Changed paths:
M gui/us_select_item.cpp
Log Message:
-----------
Merge pull request #206 from ehb54/alexey-dev-issue461
GMP / R&D Run Manager -- rename 'Delete Record' to 'Remove for the List' button
Commit: 974a1fd3a4ae3730dbe5ff47918c3c504f10fce1
https://github.com/ehb54/ultrascan3/commit/974a1fd3a4ae3730dbe5ff47918c3c504f10fce1
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-04-17 (Thu, 17 Apr 2025)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
Log Message:
-----------
us_legacy_converter: sort and ckeck the replicates before averaging
Commit: 9fef9ae1e2bd04121cdb735d8a66b3bf8d624256
https://github.com/ehb54/ultrascan3/commit/9fef9ae1e2bd04121cdb735d8a66b3bf8d624256
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-04-17 (Thu, 17 Apr 2025)
Changed paths:
M admin/us_branch/us_branch.php
M gui/us_select_item.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M utils/us_ana_profile.cpp
Log Message:
-----------
Merge remote-tracking branch 'upstream/master' into issue_458
Commit: 36702bc8f7b8a4335f8a35bf451f2c1c639bb2a3
https://github.com/ehb54/ultrascan3/commit/36702bc8f7b8a4335f8a35bf451f2c1c639bb2a3
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-04-17 (Thu, 17 Apr 2025)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M utils/us_ana_profile.cpp
Log Message:
-----------
Merge pull request #194 from ehb54/alexey-dev-issue445
GMP-Report Comb. & pseudo Plots: -- reduce title sizes in the underlying programs
Commit: c25a0de101ce6689c4a8974f0909f5f650b9a6f0
https://github.com/ehb54/ultrascan3/commit/c25a0de101ce6689c4a8974f0909f5f650b9a6f0
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-04-17 (Thu, 17 Apr 2025)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
Log Message:
-----------
us_legacy_converter.cpp: fixed a typo
Commit: 880bd4fe85bdef01a89d40bbba203b607fd93f0b
https://github.com/ehb54/ultrascan3/commit/880bd4fe85bdef01a89d40bbba203b607fd93f0b
Author: aaron <aaron at aucsolutions.com>
Date: 2025-04-17 (Thu, 17 Apr 2025)
Changed paths:
M programs/us_esigner_gmp/us_esigner_gmp.h
Log Message:
-----------
add help for esigner fix
Commit: 826aca744891015c1c2ca4847eba19eef74691bf
https://github.com/ehb54/ultrascan3/commit/826aca744891015c1c2ca4847eba19eef74691bf
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-04-17 (Thu, 17 Apr 2025)
Changed paths:
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
Log Message:
-----------
Merge pull request #204 from samo38/issue_458
Beckman scan replicates
Commit: 2e0d660e83d41cd6a805c89be4603165131e3414
https://github.com/ehb54/ultrascan3/commit/2e0d660e83d41cd6a805c89be4603165131e3414
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-04-17 (Thu, 17 Apr 2025)
Changed paths:
R doc/manual/2dsa.body
A doc/manual/2dsa/2dsa.body
A doc/manual/2dsa/2dsa_advan.body
A doc/manual/2dsa/2dsa_analvv.body
A doc/manual/2dsa/2dsa_analys.body
R doc/manual/2dsa_advan.body
R doc/manual/2dsa_analvv.body
R doc/manual/2dsa_analys.body
M doc/manual/Makefile
M doc/manual/README
M doc/manual/astfem_sim.body
M doc/manual/cfa_viewer.body
M doc/manual/colorgradient.body
M doc/manual/config.body
M doc/manual/config2.body
M doc/manual/convert.body
M doc/manual/data_loader.body
M doc/manual/ddist_combine.body
M doc/manual/dens_match.body
A doc/manual/experiment/experiment_cells.body
A doc/manual/experiment/experiment_general.body
A doc/manual/experiment/experiment_photomult.body
A doc/manual/experiment/experiment_rotor.body
A doc/manual/experiment/experiment_solutions.body
A doc/manual/experiment/experiment_speeds.body
A doc/manual/experiment/experiment_upload.body
R doc/manual/experiment_cells.body
R doc/manual/experiment_general.body
R doc/manual/experiment_photomult.body
R doc/manual/experiment_rotor.body
R doc/manual/experiment_solutions.body
R doc/manual/experiment_speeds.body
R doc/manual/experiment_upload.body
M doc/manual/export_legacy.body
R doc/manual/fe_match.body
A doc/manual/fe_match/fe_match.body
A doc/manual/fe_match/fe_match_adv.body
A doc/manual/fe_match/fe_match_controls.body
A doc/manual/fe_match/fe_match_lddat.body
A doc/manual/fe_match/fe_match_simulate.body
R doc/manual/fe_match_adv.body
R doc/manual/fe_match_controls.body
R doc/manual/fe_match_lddat.body
R doc/manual/fe_match_simulate.body
M doc/manual/fit_meniscus.body
M doc/manual/ga_initialize.body
A doc/manual/gmp/gmp.body
A doc/manual/gmp/gmp_audit_trail.body
A doc/manual/gmp/gmp_data_acquisition.body
A doc/manual/gmp/gmp_data_acquisition_experiment.body
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A doc/manual/gmp/gmp_protocol_development.body
A doc/manual/gmp/gmp_report_generator.body
A doc/manual/gmp/gmp_signature.body
M doc/manual/grid_editor.body
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Merge pull request #195 from ehb54/385-enhancement-help-documentation-for-gmp-module
385 enhancement help documentation for gmp module
Commit: cc897538f4b49167b4ab82e538eb313fcd9421f5
https://github.com/ehb54/ultrascan3/commit/cc897538f4b49167b4ab82e538eb313fcd9421f5
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-04-19 (Sat, 19 Apr 2025)
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M makeall.sh
Log Message:
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Update makeall.sh
Commit: f9a248c9559a267891930bd5d183491a223dd415
https://github.com/ehb54/ultrascan3/commit/f9a248c9559a267891930bd5d183491a223dd415
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-04-19 (Sat, 19 Apr 2025)
Changed paths:
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Log Message:
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Merge pull request #171 from samo38/issue_399_docker
Issue 399 docker
Commit: 9232df41fc0b3145b92232682f53b1d5b3c1c4e4
https://github.com/ehb54/ultrascan3/commit/9232df41fc0b3145b92232682f53b1d5b3c1c4e4
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-04-19 (Sat, 19 Apr 2025)
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Log Message:
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release build dockerfiles ubuntu 24 changes
Commit: 38f0b78f3870f159d9138b3a218223cc98dc551b
https://github.com/ehb54/ultrascan3/commit/38f0b78f3870f159d9138b3a218223cc98dc551b
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-04-19 (Sat, 19 Apr 2025)
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Log Message:
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updates for manual building; rockylinux docker to rockylinux/rockylinux
Commit: f2d0c33e50c2a5c71a84dc86bd766a2723258d79
https://github.com/ehb54/ultrascan3/commit/f2d0c33e50c2a5c71a84dc86bd766a2723258d79
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-04-19 (Sat, 19 Apr 2025)
Changed paths:
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Log Message:
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Merge pull request #208 from ehb54/ehb54-issue-465
Update makeall.sh
Commit: c7dcf13e2f5922b301100d56a8747319e3f82ec1
https://github.com/ehb54/ultrascan3/commit/c7dcf13e2f5922b301100d56a8747319e3f82ec1
Author: Borries Demeler <us3 at c302-006.ls6.tacc.utexas.edu>
Date: 2025-04-20 (Sun, 20 Apr 2025)
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Log Message:
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remove unneeded QtWidgets include
Commit: 5ef89678706048fb5a08c210a96eba8d6e8b388e
https://github.com/ehb54/ultrascan3/commit/5ef89678706048fb5a08c210a96eba8d6e8b388e
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-04-20 (Sun, 20 Apr 2025)
Changed paths:
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Log Message:
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Merge pull request #210 from ehb54/ehb-issue-467
remove unneeded QtWidgets include
Commit: d2c787a81f1750452dfa7050525168e37b184e79
https://github.com/ehb54/ultrascan3/commit/d2c787a81f1750452dfa7050525168e37b184e79
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-04-23 (Wed, 23 Apr 2025)
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Log Message:
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add mathops.h for ubuntu24 building
Commit: 675938904b2ca02a248013f90aa156d6e2a8efb3
https://github.com/ehb54/ultrascan3/commit/675938904b2ca02a248013f90aa156d6e2a8efb3
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-04-24 (Thu, 24 Apr 2025)
Changed paths:
M admin/release/ubuntu/Dockerfile
Log Message:
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Update admin/release/ubuntu/Dockerfile
Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Commit: e390e4c3b149954ef55dc0e055e7b87faa712ce7
https://github.com/ehb54/ultrascan3/commit/e390e4c3b149954ef55dc0e055e7b87faa712ce7
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-04-24 (Thu, 24 Apr 2025)
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Update Dockerfile
Remove qtweb - webengine & location.
Commit: 2c8a686007e4d599b332e2dccd10170c6af7fb4a
https://github.com/ehb54/ultrascan3/commit/2c8a686007e4d599b332e2dccd10170c6af7fb4a
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-04-25 (Fri, 25 Apr 2025)
Changed paths:
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Log Message:
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Merge pull request #209 from ehb54/ehb-issue-466
Ehb issue 466
Commit: ebb50b92ba3ab623591f97828782e61eb5cfa707
https://github.com/ehb54/ultrascan3/commit/ebb50b92ba3ab623591f97828782e61eb5cfa707
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-04-29 (Tue, 29 Apr 2025)
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M programs/us_reporter_gmp/us_reporter_gmp.cpp
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Log Message:
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GMP: 6 REPORT -- compute weight type {s,D,f/f0,MW} average & add to the Integr. section for each range
Commit: d980215637d540f90ab747a9bf16889511ee2515
https://github.com/ehb54/ultrascan3/commit/d980215637d540f90ab747a9bf16889511ee2515
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-04-29 (Tue, 29 Apr 2025)
Changed paths:
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Log Message:
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GMP: 1. EXP: AnalysisProfile -- changed pseudo-3d plot default settings
Commit: 2eb1848d73714c7b61fe515ca0e88a8087a20486
https://github.com/ehb54/ultrascan3/commit/2eb1848d73714c7b61fe515ca0e88a8087a20486
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-04-29 (Tue, 29 Apr 2025)
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A doc/manual/load/load_model_dis-MID.body
A doc/manual/load/load_model_distrib.body
A doc/manual/load/load_noise.body
A doc/manual/load/load_noise_details.body
R doc/manual/load_auc.body
R doc/manual/load_colormap.body
R doc/manual/load_model_dis-MID.body
R doc/manual/load_model_distrib.body
R doc/manual/load_noise.body
R doc/manual/load_noise_details.body
M doc/manual/mainstyle.css
M doc/manual/make-html.sh
M doc/manual/make-wraps.sh
M doc/manual/manage_data.body
M doc/manual/manage_data_cmenu.body
M doc/manual/manage_data_thelp.body
M doc/manual/manual.qhp
M doc/manual/mwlr_view_load.body
M doc/manual/mwlr_viewer.body
M doc/manual/pcsa.body
M doc/manual/pcsa_analys.body
M doc/manual/pcsa_mlines.body
M doc/manual/pcsa_rpscan.body
M doc/manual/pseudo3d_combine.body
M doc/manual/register.body
M doc/manual/reporter.body
A doc/manual/sassoc.body
M doc/manual/second_moment.body
M doc/manual/simparams.body
A doc/manual/somo.body
M doc/manual/time_derivative.body
M doc/manual/us_edit.body
M doc/manual/us_edit_mwl.body
M doc/manual/us_fds_filemanager.body
M doc/manual/uscolor2.body
M doc/manual/vhw_combine.body
M doc/manual/vhw_distrib_plot.body
M doc/manual/vhw_enhanced.body
M gui/us_select_item.cpp
M makeall.sh
M programs/us_2dsa/us_2dsa.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M utils/us_ana_profile.cpp
M utils/us_geturl.h
Log Message:
-----------
Merge pull request #211 from ehb54/master
add current master into alxey-dev-issue425
Commit: ee423e5ad3a0dd89e1bd4dea5cdf682d1292d0de
https://github.com/ehb54/ultrascan3/commit/ee423e5ad3a0dd89e1bd4dea5cdf682d1292d0de
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-04-29 (Tue, 29 Apr 2025)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- split all normalization operations by channel & save actions and normalizations accordingly...
Commit: 6326d6909cfe6c32c59459cb02d7676c3f94cade
https://github.com/ehb54/ultrascan3/commit/6326d6909cfe6c32c59459cb02d7676c3f94cade
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-04-30 (Wed, 30 Apr 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP: 6 REPORT -- [change label ] compute weight type {s,D,f/f0,MW} average & add to the Integr. section for each range ush
Commit: 64a2c9f9d597adb905f324ddb340d2e1da7852aa
https://github.com/ehb54/ultrascan3/commit/64a2c9f9d597adb905f324ddb340d2e1da7852aa
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-01 (Thu, 01 May 2025)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP-ABDE: 1. EXP. setting -- bug fixed causing crash in rare cases when loaded investigator didn't have any solutions in the DB, and changing to investigator with the solutions in the DB did not updated solution list properly (problem existed only for ABDE type)...
Commit: d42e72c78bde90edf16acbe07b71861d24f29994
https://github.com/ehb54/ultrascan3/commit/d42e72c78bde90edf16acbe07b71861d24f29994
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-01 (Thu, 01 May 2025)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP-ABDE: 1. EXP. setting -- [prevent crash if there is still no solutions on the DB, inform user, close the program] bug fixed causing crash in rare cases when loaded investigator didn't have any solutions in the DB, and changing to investigator with the solutions in the DB did not updated solution list properly (problem existed only for ABDE type)...
Commit: 651999f102dbcd400603e3d8ac42f8817642457d
https://github.com/ehb54/ultrascan3/commit/651999f102dbcd400603e3d8ac42f8817642457d
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-05-02 (Fri, 02 May 2025)
Changed paths:
M utils/us_report_gmp.cpp
Log Message:
-----------
Merge pull request #213 from ehb54/alexey-dev-issue473
GMP: 1. EXP: AnalysisProfile -- changed pseudo-3d plot default settings (s vs. f/f0 only)
Commit: 1dd0c98e07d437e2f4f43befe329107625465b09
https://github.com/ehb54/ultrascan3/commit/1dd0c98e07d437e2f4f43befe329107625465b09
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-02 (Fri, 02 May 2025)
Changed paths:
M utils/us_report_gmp.cpp
Log Message:
-----------
Merge branch 'master' into alexey-dev-issue470
Commit: 5a187617baa3311542a00dc75a014971bdd522d8
https://github.com/ehb54/ultrascan3/commit/5a187617baa3311542a00dc75a014971bdd522d8
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-02 (Fri, 02 May 2025)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- before profiles saving, compose JSON with info on each channel for normalization (and ranges intersections with integral curves in future)...
Commit: c45b10ccba0cb05603ee3dae1a55a6f13c1b2ac7
https://github.com/ehb54/ultrascan3/commit/c45b10ccba0cb05603ee3dae1a55a6f13c1b2ac7
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-05-03 (Sat, 03 May 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M utils/us_report_gmp.cpp
Log Message:
-----------
Merge pull request #212 from ehb54/alexey-dev-issue470
GMP: 6 REPORT -- compute weight type {s,D,f/f0,MW} average & add to the report for each integraiton /typerange
Commit: 67123ab5161ba79264f903a5a3b10bee216cdcd6
https://github.com/ehb54/ultrascan3/commit/67123ab5161ba79264f903a5a3b10bee216cdcd6
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-03 (Sat, 03 May 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP-ABDE: 5. REPORT -- due to manual generation of label items for combined plots, fix the height for all comb. plots to be not larger than 60% of the pronter's page height to accomodate all legend items...
Commit: f7f28efef6269efddcc6b39f8b6dc6971b130ec9
https://github.com/ehb54/ultrascan3/commit/f7f28efef6269efddcc6b39f8b6dc6971b130ec9
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-05 (Mon, 05 May 2025)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP-ABDE: 1. EXP. -- create 2 additional records on DB upon GMP run submission for later analysis...
Commit: fc492cd9707163ecb1f37a7470143749262fd658
https://github.com/ehb54/ultrascan3/commit/fc492cd9707163ecb1f37a7470143749262fd658
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-05-06 (Tue, 06 May 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
Merge pull request #215 from ehb54/alexey-dev-issue475
GMP-ABDE: 5. REPORT -- due to manual generation of label items for combined plots, fix the height for all comb. plots to be not larger than 60% of the pronter's page height to accomodate all legend items...
Commit: 9272af811c5af3ddedf325f1bfb230f159cb8a01
https://github.com/ehb54/ultrascan3/commit/9272af811c5af3ddedf325f1bfb230f159cb8a01
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-05-06 (Tue, 06 May 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
Log Message:
-----------
us_astfem_sim.cpp: replace qRound with qCeil to find the number of radail points. Clear radial points before populating them
Commit: 482325116aa9e6abd676bf69550ffe9a733b9c85
https://github.com/ehb54/ultrascan3/commit/482325116aa9e6abd676bf69550ffe9a733b9c85
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-05-06 (Tue, 06 May 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
Log Message:
-----------
us_astfem_sim.cpp: remove qDebug() <<
Commit: 8ae593f413aad714b0c846dd987775023da589b1
https://github.com/ehb54/ultrascan3/commit/8ae593f413aad714b0c846dd987775023da589b1
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-05-07 (Wed, 07 May 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
Log Message:
-----------
Merge pull request #216 from samo38/issue_480
ASTFEM simulator GUI program
Commit: 82065f19ec352bccaec6f6d14600d58c6ef6e002
https://github.com/ehb54/ultrascan3/commit/82065f19ec352bccaec6f6d14600d58c6ef6e002
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-05-08 (Thu, 08 May 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
Log Message:
-----------
us_astfem_sim.cpp: replace qCeil with qRound everywhere to make the radial points
Commit: 26a29e48ab47456f2f8f2219bdf1bcf1f5391eb2
https://github.com/ehb54/ultrascan3/commit/26a29e48ab47456f2f8f2219bdf1bcf1f5391eb2
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-05-09 (Fri, 09 May 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
Log Message:
-----------
Merge pull request #217 from samo38/issue_480_2
ASTFEM simulator GUI program 2
Commit: 18f4e3adbc3f1d7c659dea68f8e8499c16e27b0d
https://github.com/ehb54/ultrascan3/commit/18f4e3adbc3f1d7c659dea68f8e8499c16e27b0d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-09 (Fri, 09 May 2025)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS (MWL-DECONV.) -- compute percentages for APRofile ranges per channel per range, pass the info to json to be saved in DB & used in reporting; clean plots legends, colors etc.; keep track on prcessed channels and on normalization before enabling to save profiles...
Commit: 75cc0ecc55b7bb99dbcfdb7441600f5f86bd7f9d
https://github.com/ehb54/ultrascan3/commit/75cc0ecc55b7bb99dbcfdb7441600f5f86bd7f9d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-11 (Sun, 11 May 2025)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- progress on accomodating both MWL-DECONV. & single-WL ABDE types in GMP analysis...
Commit: 4174ae5ad04bc30d060301483dff29cafaddaf16
https://github.com/ehb54/ultrascan3/commit/4174ae5ad04bc30d060301483dff29cafaddaf16
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-11 (Sun, 11 May 2025)
Changed paths:
M gui/us_data_loader.cpp
M gui/us_data_loader.h
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.h
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- [More] progress on accomodating both MWL-DECONV. & single-WL ABDE types in GMP analysis...
Commit: fe10072d2d56c1c83e145faaefbf17146a92413c
https://github.com/ehb54/ultrascan3/commit/fe10072d2d56c1c83e145faaefbf17146a92413c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-12 (Mon, 12 May 2025)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP-ABDE: 1. EXP. -- hierarchical checks before run submission enforcing number of conditions for solutions, extinct. profiles, ranges - both for SWL and MWL-DECONV. experiments...
Commit: 0228986fa9a4a3653d802eaed73eed6e29e113d2
https://github.com/ehb54/ultrascan3/commit/0228986fa9a4a3653d802eaed73eed6e29e113d2
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-13 (Tue, 13 May 2025)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- [More, more] progress on accomodating both MWL-DECONV. & single-WL ABDE types in GMP analysis...
Commit: 1a9fce71cc056ef952dae2fa67512802aa7e73d1
https://github.com/ehb54/ultrascan3/commit/1a9fce71cc056ef952dae2fa67512802aa7e73d1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-13 (Tue, 13 May 2025)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.h
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- implement (1) switch from MWL-DECONV. || single-WL ABDE types in GMP analysis to REPORT; (2) switch from ABDE-analysis to Run Manager, both when just want to return, or when ABDE profiles already saved form different session...
Commit: bd8f08dc9de642c5dfdf5c3592d0d5b6192245f2
https://github.com/ehb54/ultrascan3/commit/bd8f08dc9de642c5dfdf5c3592d0d5b6192245f2
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-14 (Wed, 14 May 2025)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- pass & store in DB additional info required for ABDE plots restoration in REPORT...
Commit: 8a6e905de9cba1b09ca1c9205ea1e52462e9a266
https://github.com/ehb54/ultrascan3/commit/8a6e905de9cba1b09ca1c9205ea1e52462e9a266
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-14 (Wed, 14 May 2025)
Changed paths:
M gui/us_load_auc.cpp
M gui/us_load_auc.h
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- major prep. steps for reconstructing ABDE profile plots & ranges-percentages in the subsequesnt REPORT stage...
Commit: a91bab7f8a743643cd2135af67bb247dd6dfe833
https://github.com/ehb54/ultrascan3/commit/a91bab7f8a743643cd2135af67bb247dd6dfe833
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-15 (Thu, 15 May 2025)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- ALL steps for reconstructing ABDE profile plots & ranges-percentages in the subsequesnt REPORT stage...
Commit: df77cc75f05063b406109799b43fac7619d32644
https://github.com/ehb54/ultrascan3/commit/df77cc75f05063b406109799b43fac7619d32644
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-05-16 (Fri, 16 May 2025)
Changed paths:
M us_somo/develop/src/us_hydrodyn_saxs_hplc_makeiq.cpp
Log Message:
-----------
turn off average peak computation in trial make iq mode
Commit: c5e1f54ccc1dd1e99d7c360d26d3cfb2c3973443
https://github.com/ehb54/ultrascan3/commit/c5e1f54ccc1dd1e99d7c360d26d3cfb2c3973443
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-16 (Fri, 16 May 2025)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.h
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- [ADD passing RMSD of the spectral deconv. for each channel into ABDE norm & later REPORT] ALL steps for reconstructing ABDE profile plots & ranges-percentages in the subsequesnt REPORT stage...
Commit: 84405506d08408364790332c02105f79d00f5df1
https://github.com/ehb54/ultrascan3/commit/84405506d08408364790332c02105f79d00f5df1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-16 (Fri, 16 May 2025)
Changed paths:
M gui/us_gui_util.cpp
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- progress on ABDE GMP reporting...
Commit: 78f1a182dfa7f71b5cc44c8ace4cd9fa215c6405
https://github.com/ehb54/ultrascan3/commit/78f1a182dfa7f71b5cc44c8ace4cd9fa215c6405
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-19 (Mon, 19 May 2025)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- [MORE ] progress on ABDE GMP reporting...
Commit: 0a2beabcae1b687c5687c4b2450fd1af74dfc220
https://github.com/ehb54/ultrascan3/commit/0a2beabcae1b687c5687c4b2450fd1af74dfc220
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-19 (Mon, 19 May 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M utils/us_report_gmp.cpp
Log Message:
-----------
Merge pull request #220 from ehb54/master
Merge latest master into alexey-dev-issue425 (ABDE dev.)
Commit: ba9596172bb5ac437f7715f3df79e08a1e249dbb
https://github.com/ehb54/ultrascan3/commit/ba9596172bb5ac437f7715f3df79e08a1e249dbb
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-19 (Mon, 19 May 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- [MORE 11] progress on ABDE GMP reporting...
Commit: 183b6de5faf3ba6ce984692955573dbabb2fb8e4
https://github.com/ehb54/ultrascan3/commit/183b6de5faf3ba6ce984692955573dbabb2fb8e4
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-19 (Mon, 19 May 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- [MORE 22] progress on ABDE GMP reporting...
Commit: c9481b9fa1e2f08eb0263ccb9fa89143b4e48c46
https://github.com/ehb54/ultrascan3/commit/c9481b9fa1e2f08eb0263ccb9fa89143b4e48c46
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-05-20 (Tue, 20 May 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M utils/us_model.cpp
M utils/us_model.h
Log Message:
-----------
us_grid_editor: add a new feature to select either midpoints or starting points of bins to create arrays
Commit: 57366bd055ebc2cbe566db6512a5cb05df5921e2
https://github.com/ehb54/ultrascan3/commit/57366bd055ebc2cbe566db6512a5cb05df5921e2
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-20 (Tue, 20 May 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP-ABDE: 6. REPORT -- in every chanels report, indicate if it's MWL-Deconv. or not...
Commit: b26c7abcb965856b55a214c2c6792890a62511a8
https://github.com/ehb54/ultrascan3/commit/b26c7abcb965856b55a214c2c6792890a62511a8
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-05-26 (Mon, 26 May 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
program two different approaches to generate points. One is using the midpoints of the bins and the other one is to generate points in a way that it includes the first and last points of the range.
Commit: e88c47226e524915f45cf294f91b411e1d4908fe
https://github.com/ehb54/ultrascan3/commit/e88c47226e524915f45cf294f91b411e1d4908fe
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-05-26 (Mon, 26 May 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
Log Message:
-----------
rename the midpoints radio button
Commit: 25386426e2e1b0aee710fd19ff993377ddf8e4d8
https://github.com/ehb54/ultrascan3/commit/25386426e2e1b0aee710fd19ff993377ddf8e4d8
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-05-26 (Mon, 26 May 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
Log Message:
-----------
fixed the error with the code when the grid list is empty
Commit: a6539c9236ab2859156a08cf63545c460a93a3c1
https://github.com/ehb54/ultrascan3/commit/a6539c9236ab2859156a08cf63545c460a93a3c1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-27 (Tue, 27 May 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP REPORTER: stand_alone -- adapt and modify stand-alone program to generate custom reports for ABDE experiments...
Commit: 26b0b429314fbc2915a25a1c3e54c86adfbfa497
https://github.com/ehb54/ultrascan3/commit/26b0b429314fbc2915a25a1c3e54c86adfbfa497
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-28 (Wed, 28 May 2025)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- bug fixed: do not try to read (unexisting) RMSDs for single-wvl type of exp....
Commit: 2434b5657469571d06a4087ec9ce699ab1170a0a
https://github.com/ehb54/ultrascan3/commit/2434b5657469571d06a4087ec9ce699ab1170a0a
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-28 (Wed, 28 May 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP REPORTER: stand_alone -- work on modified per-channel section; (simpler) 2-level tree, reflect protocols parms. for [auto]- & user-selected items for [custom]-report...
Commit: fc9b1101876665b0f57f81ddaaf05aad842920da
https://github.com/ehb54/ultrascan3/commit/fc9b1101876665b0f57f81ddaaf05aad842920da
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-05-29 (Thu, 29 May 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M utils/us_model.cpp
M utils/us_model.h
Log Message:
-----------
Merge pull request #221 from samo38/issue_477
us_grid_editor: add a button to select how to pick points from bins
Commit: cf6bc031cac6df21321a972bd936ec2a28cd6be6
https://github.com/ehb54/ultrascan3/commit/cf6bc031cac6df21321a972bd936ec2a28cd6be6
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-29 (Thu, 29 May 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP REPORTER: stand_alone && GMP -- USer-interactions: 5. ANALYSIS - different processing for velocity and ABDE types; make sure all timestamps in UTC to be consistent with the rest of report parts...
Commit: 4407f9e2833642dd3c71488b515b5960db37ba8e
https://github.com/ehb54/ultrascan3/commit/4407f9e2833642dd3c71488b515b5960db37ba8e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-30 (Fri, 30 May 2025)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[Same for Audit Trail Program -- ] GMP REPORTER: stand_alone && GMP -- USer-interactions: 5. ANALYSIS - different processing for velocity and ABDE types; make sure all timestamps in UTC to be consistent with the rest of report parts...
Commit: fdf13a360a448b311b961c794c8bc49115d6eb0c
https://github.com/ehb54/ultrascan3/commit/fdf13a360a448b311b961c794c8bc49115d6eb0c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-30 (Fri, 30 May 2025)
Changed paths:
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
Log Message:
-----------
[BUG fixed -- GUI generation for Analysis part of audit ][Same for Audit Trail Program -- ] GMP REPORTER: stand_alone && GMP -- USer-interactions: 5. ANALYSIS - different processing for velocity and ABDE types; make sure all timestamps in UTC to be consistent with the rest of report parts...
Commit: 1f7d03ec05ca617bb4f2a5609197a8f8fec0be89
https://github.com/ehb54/ultrascan3/commit/1f7d03ec05ca617bb4f2a5609197a8f8fec0be89
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-05-30 (Fri, 30 May 2025)
Changed paths:
M us_somo/develop/src/us_hydrodyn_saxs_hplc_makeiq.cpp
Log Message:
-----------
Merge pull request #218 from ehb54/ehb54-issue-487
turn off average peak computation in trial make iq mode
Commit: 8b106375d8b90fc30ae4722410cdb0a8b8d44f36
https://github.com/ehb54/ultrascan3/commit/8b106375d8b90fc30ae4722410cdb0a8b8d44f36
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-30 (Fri, 30 May 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP REPORTER: stand_alone && GMP -- add UTC timestamps for analysis & aditing to each channel's info...
Commit: a5fafaea78544856e935ea197d76bd9a23ec2004
https://github.com/ehb54/ultrascan3/commit/a5fafaea78544856e935ea197d76bd9a23ec2004
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-05-30 (Fri, 30 May 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP REPORTER: stand_alone && GMP -- add info on analyte(s) and buffer (if selected) used in MWL-deconv. to each channel's analysis sections...
Commit: 61bf76cfc06ef318b0751e2b1b55e2d568d0d99f
https://github.com/ehb54/ultrascan3/commit/61bf76cfc06ef318b0751e2b1b55e2d568d0d99f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-06-01 (Sun, 01 Jun 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP REPORTER: GMP -- [bug fixed --] building per-channel tree in background is still required to re-use stand-alone program in ABDE-reporting GMP stage...
Commit: a855b7702e1f3b865c7f926cd18c111bb863102d
https://github.com/ehb54/ultrascan3/commit/a855b7702e1f3b865c7f926cd18c111bb863102d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-06-01 (Sun, 01 Jun 2025)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
Log Message:
-----------
GMP REPORTER: GMP -- [bug fixed --] properly close/delete ABDE-normalizer widget before reattaching (esp. with different types of analsyis), and to prevent memory leak...
Commit: 740e6773a1733535a6ffbef1e8f336f0cc569dbc
https://github.com/ehb54/ultrascan3/commit/740e6773a1733535a6ffbef1e8f336f0cc569dbc
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-06-01 (Sun, 01 Jun 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP REPORTER: GMP -- restore deletion of the primary autoflow record after report generation (was suppressed for tests)...
Commit: 875b77a5bc8555b51afa86826f004882b5c5bd3c
https://github.com/ehb54/ultrascan3/commit/875b77a5bc8555b51afa86826f004882b5c5bd3c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-06-02 (Mon, 02 Jun 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP REPORTER: GMP & stans-alone -- revised AProfile sections for each channel; ref. & used refs. channels info ...
Commit: 2704fd06df2d50c8eb569579d4cecebe4cbef948
https://github.com/ehb54/ultrascan3/commit/2704fd06df2d50c8eb569579d4cecebe4cbef948
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-06-02 (Mon, 02 Jun 2025)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP REPORTER: GMP & stans-alone -- pass info for meniscus positions manualy seletced from etit-to-analysis-to-report ...
Commit: bb17e697fa40e2e1b1d9cb8f30302a496ca6d107
https://github.com/ehb54/ultrascan3/commit/bb17e697fa40e2e1b1d9cb8f30302a496ca6d107
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-06-03 (Tue, 03 Jun 2025)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP REPORTER: GMP & stans-alone -- prep.steps for getting distributions info from abde-norm. & generating per-channel .csv files with hyperlinks in report...
Commit: 991d00bc2c7e70807593a0fbb7d7aab905d6c108
https://github.com/ehb54/ultrascan3/commit/991d00bc2c7e70807593a0fbb7d7aab905d6c108
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-06-04 (Wed, 04 Jun 2025)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
ABDE-GMP 5.ANALYSIS && 6. REPORT: add hyperlinks to .csv formatted files for ABDE profiles (r-pos, dna, prot, integr.-dna, integr-protein) for each channel; add option to show/hide ranges passed from AProfile in abde-plots; lots of bugs fixed as to proper abde plots generation...
Commit: c0ee5b659e94c0d5673e0a77bf318d22ca82637a
https://github.com/ehb54/ultrascan3/commit/c0ee5b659e94c0d5673e0a77bf318d22ca82637a
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-06-04 (Wed, 04 Jun 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
ABDE-GMP 5.ANALYSIS && 6. REPORT: bug fixed for different extracting menisc. info & .csv file generation for SWL- and MWL- cases...
Commit: eab6517df1299fd0bb557c89ec6a7612074e88a3
https://github.com/ehb54/ultrascan3/commit/eab6517df1299fd0bb557c89ec6a7612074e88a3
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-06-04 (Wed, 04 Jun 2025)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
Log Message:
-----------
ABDE-GMP 5.ANALYSIS && 6. REPORT: use rotating list of symbols to plot aprofile's ranges in ABDE sitributions for each channel...
Commit: 27e4a5f0385c4745c325f6ef14a59e6ee5084f76
https://github.com/ehb54/ultrascan3/commit/27e4a5f0385c4745c325f6ef14a59e6ee5084f76
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-06-05 (Thu, 05 Jun 2025)
Changed paths:
M utils/us_hydrosim.cpp
Log Message:
-----------
Fix indentation issue in us_hydrosim constructor
Commit: a38b64b20e0b3b5293649517a059b85a4bb101a2
https://github.com/ehb54/ultrascan3/commit/a38b64b20e0b3b5293649517a059b85a4bb101a2
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-06-05 (Thu, 05 Jun 2025)
Changed paths:
M gui/us_predict1.cpp
Log Message:
-----------
Update vbar and manual flag handling in US_Predict1
Revised vbar calculation to use `vbar20` and account for temperature adjustments. Added `manual` flag handling for density and viscosity updates. Adjusted buffer assignments to include manual flag.
Commit: 54feaa5928fc3262cdb060a62b32715616195a25
https://github.com/ehb54/ultrascan3/commit/54feaa5928fc3262cdb060a62b32715616195a25
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-06-05 (Thu, 05 Jun 2025)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
add a new eature to parse dsp files
Commit: ddde651a9a7025886c06fe04b97c24b057547aac
https://github.com/ehb54/ultrascan3/commit/ddde651a9a7025886c06fe04b97c24b057547aac
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-06-05 (Thu, 05 Jun 2025)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
fixed indentations
Commit: ed621e065ab63a6cd8a044afd951812e12259ade
https://github.com/ehb54/ultrascan3/commit/ed621e065ab63a6cd8a044afd951812e12259ade
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-06-07 (Sat, 07 Jun 2025)
Changed paths:
M gui/us_predict1.cpp
M utils/us_hydrosim.cpp
Log Message:
-----------
Merge pull request #223 from ehb54/lukas/us_sim_bug
Lukas/us sim bug
Commit: fe9db1b044aa3072202b9d53cbee4f36706626f7
https://github.com/ehb54/ultrascan3/commit/fe9db1b044aa3072202b9d53cbee4f36706626f7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-06-09 (Mon, 09 Jun 2025)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M utils/us_link_ssl.cpp
M utils/us_link_ssl.h
Log Message:
-----------
GMP && R&D: reduce timeout for checking connecitions & allow for datDisk only if all machines are inaccessible...
Commit: ddc167b6587e81f69ab255ae87c1183b400d7f5a
https://github.com/ehb54/ultrascan3/commit/ddc167b6587e81f69ab255ae87c1183b400d7f5a
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-06-09 (Mon, 09 Jun 2025)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
Merge pull request #224 from samo38/issue_490
DSP file load issue
Commit: e7ce0a2755510be41ed631543dc4b56f1343e95f
https://github.com/ehb54/ultrascan3/commit/e7ce0a2755510be41ed631543dc4b56f1343e95f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-06-10 (Tue, 10 Jun 2025)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
ABDE-GMP 5.ANALYSIS && 6. REPORT: latest updates for analysis and report...
Commit: 738dce2821be7045ec0353feec2c2786d4e90fdf
https://github.com/ehb54/ultrascan3/commit/738dce2821be7045ec0353feec2c2786d4e90fdf
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-06-13 (Fri, 13 Jun 2025)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h
Log Message:
-----------
fixed the issue with us_mwl_sf_plot3d to resize the widget
Commit: ce78d70a3880e50fb61ee5872382ed67c7a1347b
https://github.com/ehb54/ultrascan3/commit/ce78d70a3880e50fb61ee5872382ed67c7a1347b
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-06-13 (Fri, 13 Jun 2025)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
Log Message:
-----------
fixed the issue with us_mwl_sf_plot3d to resize the widget
Commit: 3ce70f11d71c587cd3c47df34f84b6a778c6974f
https://github.com/ehb54/ultrascan3/commit/3ce70f11d71c587cd3c47df34f84b6a778c6974f
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-06-16 (Mon, 16 Jun 2025)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h
Log Message:
-----------
Merge pull request #227 from samo38/issue_193
Issue 193
Commit: 12dd6370e011685566749afe283898a6bfa25c9c
https://github.com/ehb54/ultrascan3/commit/12dd6370e011685566749afe283898a6bfa25c9c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-06-16 (Mon, 16 Jun 2025)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
ABDE-GMP 5.ANALYSIS && 6. REPORT: diff. colors for ANBDE plots && corresponding legends...
Commit: 8cc9d653aaf77bff14cfee7252d2e72dc5f6dca3
https://github.com/ehb54/ultrascan3/commit/8cc9d653aaf77bff14cfee7252d2e72dc5f6dca3
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-06-16 (Mon, 16 Jun 2025)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
Log Message:
-----------
GMP && R&D: do not show 'allow for datDisk only' message for R&D \ if all machines are inaccessible...
Commit: 68cc1e1ca4886fffdeaa328d98582c236ff3fec6
https://github.com/ehb54/ultrascan3/commit/68cc1e1ca4886fffdeaa328d98582c236ff3fec6
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-06-16 (Mon, 16 Jun 2025)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
Log Message:
-----------
GMP && R&D: the R&D program still needs to exit if all machines are inaccessible...
Commit: cd907ffab32ed140285aae198653c9646fdeeab2
https://github.com/ehb54/ultrascan3/commit/cd907ffab32ed140285aae198653c9646fdeeab2
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-06-19 (Thu, 19 Jun 2025)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M utils/us_link_ssl.cpp
M utils/us_link_ssl.h
Log Message:
-----------
Merge pull request #228 from ehb54/alexey-dev-issue482
GMP && R&D: reduce timeout for checking connecitions & allow for datDafromDisk only
Commit: a12c2af02d5e024c4b0146b0053e2f6e89a6938f
https://github.com/ehb54/ultrascan3/commit/a12c2af02d5e024c4b0146b0053e2f6e89a6938f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-06-20 (Fri, 20 Jun 2025)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
M gui/us_predict1.cpp
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h
M us_somo/develop/src/us_hydrodyn_saxs_hplc_makeiq.cpp
M utils/us_hydrosim.cpp
M utils/us_link_ssl.cpp
M utils/us_link_ssl.h
M utils/us_model.cpp
M utils/us_model.h
Log Message:
-----------
Merge pull request #230 from ehb54/master
Add all master commits to alexey-dev-issue425
Commit: 0244ffea2b66f290eba21f8350a4b528601b5df8
https://github.com/ehb54/ultrascan3/commit/0244ffea2b66f290eba21f8350a4b528601b5df8
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-06-22 (Sun, 22 Jun 2025)
Changed paths:
M gui/us_widgets.cpp
M gui/us_widgets.h
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
GMP && R&D - ABDE-GMP test: few bugs fixed...
Commit: 9f5deea4c10e1c3c8abb9ec595158179385c8cd3
https://github.com/ehb54/ultrascan3/commit/9f5deea4c10e1c3c8abb9ec595158179385c8cd3
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-06-22 (Sun, 22 Jun 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP && R&D - ABDE-GMP test: [1]few bugs fixed...
Commit: 413c8b44dc84893c703c037cdb4b18e3da7deb21
https://github.com/ehb54/ultrascan3/commit/413c8b44dc84893c703c037cdb4b18e3da7deb21
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-06-26 (Thu, 26 Jun 2025)
Changed paths:
M gui/us_data_loader.cpp
M gui/us_data_loader.h
M gui/us_gui_util.cpp
M gui/us_load_auc.cpp
M gui/us_load_auc.h
M gui/us_widgets.cpp
M gui/us_widgets.h
M programs/us_abde/us_abde_main.cpp
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.h
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.h
M programs/us_autoflow_analysis/us_autoflow_analysis.pro
M programs/us_buoyancy/us_buoyancy.cpp
M programs/us_com_project/us_com_project.pro
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_com_project_academic/us_com_project_academic.pro
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_convert/us_experiment.cpp
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_fematch/us_fematch.pro
M programs/us_mwl_species_fit/us_load_run_noise.cpp
M programs/us_mwl_species_fit/us_load_run_noise.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.h
M programs/us_mwl_species_fit/us_mwl_species_fit.pro
A programs/us_mwl_species_fit/us_mwl_species_fit_main.cpp
M programs/us_protocol_dev/us_protocol_dev.pro
M programs/us_query_rmsd/us_query_rmsd.pro
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_reporter_gmp/us_reporter_gmp.pro
M programs/us_xpn_viewer/us_xpn_viewer.pro
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M utils/us_dataIO.cpp
M utils/us_dataIO.h
Log Message:
-----------
Merge pull request #231 from ehb54/alexey-dev-issue425
alexey-dev-issue425 into master: ABDE-GMP-framework
Commit: 6276beb67d5181eba36861791acef5e415723e89
https://github.com/ehb54/ultrascan3/commit/6276beb67d5181eba36861791acef5e415723e89
Author: aaron <aaron at aucsolutions.com>
Date: 2025-06-29 (Sun, 29 Jun 2025)
Changed paths:
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M CMakeLists.txt
M LICENSE.txt
M admin/codeql/docker/docker/Dockerfile
M admin/codeql/docker/dockerdev/Dockerfile
M admin/release/buildpkg.pl
M admin/release/centos7/Dockerfile
M admin/release/redhat/Dockerfile
M admin/release/ubuntu/Dockerfile
A admin/release/ubuntu/mathops.h
M admin/release/ubuntu_qt6/Dockerfile
A admin/us_branch/README.md
A admin/us_branch/us_branch.php
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M alpha/us.cpp
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M doc/manual/make-html.sh
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M doc/manual/manage_data.body
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M doc/manual/manage_data_thelp.body
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M doc/manual/pcsa.body
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M doc/manual/pcsa_mlines.body
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M doc/manual/ultrascan3.txt
M doc/manual/us_edit.body
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M doc/manual/us_fds_filemanager.body
M doc/manual/uscolor2.body
M doc/manual/vhw_combine.body
M doc/manual/vhw_distrib_plot.body
M doc/manual/vhw_enhanced.body
M gui/images.qrc
A gui/images/table.png
M gui/us_buffer_gui.cpp
M gui/us_buffer_gui.h
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
M gui/us_data_loader.cpp
M gui/us_data_loader.h
M gui/us_extinction_gui.cpp
M gui/us_extinction_gui.h
M gui/us_gui_util.cpp
M gui/us_gui_util.h
M gui/us_images.cpp
M gui/us_images.h
M gui/us_license.cpp
M gui/us_license.h
M gui/us_load_auc.cpp
M gui/us_load_auc.h
M gui/us_model_gui.cpp
M gui/us_model_gui.h
M gui/us_plot.cpp
M gui/us_plot.h
M gui/us_plot3d.cpp
M gui/us_predict1.cpp
M gui/us_predict1.h
M gui/us_rotor_gui.cpp
M gui/us_rotor_gui.h
M gui/us_run_details2.cpp
M gui/us_run_details2.h
M gui/us_select_item.cpp
M gui/us_select_item.h
M gui/us_sim_params_gui.cpp
M gui/us_sim_params_gui.h
M gui/us_spectrodata.cpp
M gui/us_spectrodata.h
M gui/us_widgets.cpp
M gui/us_widgets.h
M library.pri
M makeall.sh
M programs/us/us_de_DE.ts
M programs/us_2dsa/us_2dsa.cpp
M programs/us_2dsa/us_analysis_control_2d.cpp
M programs/us_abde/us_abde_main.cpp
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_astfem_sim/us_astfem_sim.h
M programs/us_astfem_sim/us_clipdata.h
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.h
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.h
M programs/us_autoflow_analysis/us_autoflow_analysis.pro
M programs/us_buoyancy/us_buoyancy.cpp
M programs/us_com_project/us_com_project.pro
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_com_project_academic/us_com_project_academic.pro
M programs/us_config/us_database.cpp
M programs/us_config/us_database.h
M programs/us_convert/us_convert.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_convert/us_experiment.cpp
M programs/us_convert/us_get_run.cpp
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
R programs/us_esigner_gmp_aux/us_esigner_gmp.pro
R programs/us_esigner_gmp_aux/us_esigner_gmp_main.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment.pro
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_fematch/us_fematch.cpp
M programs/us_fematch/us_fematch.pro
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
M programs/us_manage_data/us_data_tree.cpp
M programs/us_manage_data/us_data_tree.h
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_mpi_analysis/us_mpi_analysis.h
R programs/us_mwl_db_query/us_mwl_db_query.pro
R programs/us_mwl_db_query/us_mwl_pltctrl.cpp
R programs/us_mwl_db_query/us_mwl_pltctrl.h
R programs/us_mwl_db_query/us_mwl_run.cpp
R programs/us_mwl_db_query/us_mwl_run.h
R programs/us_mwl_db_query/us_mwlr_viewer.cpp
R programs/us_mwl_db_query/us_mwlr_viewer.h
M programs/us_mwl_species_fit/us_load_run_noise.cpp
M programs/us_mwl_species_fit/us_load_run_noise.h
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.h
M programs/us_mwl_species_fit/us_mwl_species_fit.pro
A programs/us_mwl_species_fit/us_mwl_species_fit_main.cpp
M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
M programs/us_protocol_dev/us_protocol_dev.pro
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_query_rmsd/us_query_rmsd.pro
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_reporter_gmp/us_reporter_gmp.pro
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
M programs/us_xpn_viewer/us_xpn_viewer.pro
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.h
M test/utils/CMakeLists.txt
A test/utils/test_us_simparams.cpp
A test/utils/test_us_simparams.h
M test/utils/test_us_utils_main.cpp
M us_somo/attic/INSTALL
M us_somo/develop/src/us_hydrodyn_dad.cpp
M us_somo/develop/src/us_hydrodyn_mals.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_makeiq.cpp
M us_somo/develop/src/us_util.cpp
M us_somo/extra/haddock/bin_i73/mpi/runjob
M us_somo/somo/doc/manual/somo/IntegralBaselineTheory.html
M us_somo/somo/doc/manual/somo/baseline_best.html
M us_somo/somo/doc/manual/somo/copyright.html
M us_somo/somo/doc/manual/somo/cormap.html
M us_somo/somo/doc/manual/somo/dad_parameters.html
M us_somo/somo/doc/manual/somo/fractal_dimension_options.html
M us_somo/somo/doc/manual/somo/mals_options.html
M us_somo/somo/doc/manual/somo/mals_parameters.html
M us_somo/somo/doc/manual/somo/mals_saxs_options.html
M us_somo/somo/doc/manual/somo/saxs_hplc_Gaussian_theory.html
M us_somo/somo/doc/manual/somo/saxs_hplc_ciq.html
M us_somo/somo/doc/manual/somo/saxs_hplc_conc_csv_frames.html
M us_somo/somo/doc/manual/somo/saxs_hplc_dctr.html
M us_somo/somo/doc/manual/somo/saxs_hplc_nth.html
M us_somo/somo/doc/manual/somo/saxs_hplc_options.html
M us_somo/somo/doc/manual/somo/saxs_hplc_p3d.html
M us_somo/somo/doc/manual/somo/saxs_hplc_parameters.html
M us_somo/somo/doc/manual/somo/saxs_ift.html
M us_somo/somo/doc/manual/somo/somo.html
M us_somo/somo/doc/manual/somo/somo_BEST_Analysis.html
M us_somo/somo/doc/manual/somo/somo_BEST_setup.html
M us_somo/somo/doc/manual/somo/somo_Dammin_Dammif_bead_model_properties.html
M us_somo/somo/doc/manual/somo/somo_SAXS_search.html
M us_somo/somo/doc/manual/somo/somo_add_saxs.html
M us_somo/somo/doc/manual/somo/somo_addatom.html
M us_somo/somo/doc/manual/somo/somo_addhybridization.html
M us_somo/somo/doc/manual/somo/somo_advanced_config.html
M us_somo/somo/doc/manual/somo/somo_anaflex_options.html
M us_somo/somo/doc/manual/somo/somo_asa.html
M us_somo/somo/doc/manual/somo/somo_batch.html
M us_somo/somo/doc/manual/somo/somo_bd_options.html
M us_somo/somo/doc/manual/somo/somo_bead_model_format.html
M us_somo/somo/doc/manual/somo/somo_bead_output.html
M us_somo/somo/doc/manual/somo/somo_cluster.html
M us_somo/somo/doc/manual/somo/somo_cluster_advanced_options.html
M us_somo/somo/doc/manual/somo/somo_cluster_config.html
M us_somo/somo/doc/manual/somo/somo_cluster_dmd.html
M us_somo/somo/doc/manual/somo/somo_cluster_results.html
M us_somo/somo/doc/manual/somo/somo_cluster_status.html
M us_somo/somo/doc/manual/somo/somo_cluster_submit.html
M us_somo/somo/doc/manual/somo/somo_comparative.html
M us_somo/somo/doc/manual/somo/somo_dammin_opts.html
M us_somo/somo/doc/manual/somo/somo_dmd_options.html
M us_somo/somo/doc/manual/somo/somo_file.html
M us_somo/somo/doc/manual/somo/somo_grid.html
M us_somo/somo/doc/manual/somo/somo_grid_overlap.html
M us_somo/somo/doc/manual/somo/somo_hydro.html
M us_somo/somo/doc/manual/somo/somo_hydro_expert_mode.html
M us_somo/somo/doc/manual/somo/somo_hydro_zeno.html
M us_somo/somo/doc/manual/somo/somo_hydro_zeno.html_old
M us_somo/somo/doc/manual/somo/somo_mals.html
M us_somo/somo/doc/manual/somo/somo_mals_saxs.html
M us_somo/somo/doc/manual/somo/somo_misc.html
M us_somo/somo/doc/manual/somo/somo_overlap.html
M us_somo/somo/doc/manual/somo/somo_pdb_editor.html
M us_somo/somo/doc/manual/somo/somo_pdb_editor_merge.html
M us_somo/somo/doc/manual/somo/somo_pdb_parsing.html
M us_somo/somo/doc/manual/somo/somo_pdb_parsing_expert_mode.html
M us_somo/somo/doc/manual/somo/somo_pdb_visualization.html
M us_somo/somo/doc/manual/somo/somo_residue.html
M us_somo/somo/doc/manual/somo/somo_results.html
M us_somo/somo/doc/manual/somo/somo_save.html
M us_somo/somo/doc/manual/somo/somo_saxs.html
M us_somo/somo/doc/manual/somo/somo_saxs_buffer.html
M us_somo/somo/doc/manual/somo/somo_saxs_conc.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_baseline_corr.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_fit.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_linear_baselines.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_movie.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_skewedGauss.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_svd.html
M us_somo/somo/doc/manual/somo/somo_saxs_iqq_residuals.html
M us_somo/somo/doc/manual/somo/somo_saxs_load_csv.html
M us_somo/somo/doc/manual/somo/somo_saxs_mw.html
M us_somo/somo/doc/manual/somo/somo_saxs_options.html
M us_somo/somo/doc/manual/somo/somo_saxs_residuals.html
M us_somo/somo/doc/manual/somo/somo_show_hydro.html
M us_somo/somo/doc/manual/somo/somo_uv_vis.html
M us_somo/somo/doc/manual/somo/somo_vdw_overlap.html
M us_somo/somo/doc/manual/somo/underconstruction.html
M us_somo/somo/doc/manual/somo/uv_vis_options.html
M utils/CMakeLists.txt
R utils/calc_coefficient_documentation.pdf
M utils/libus_utils.pro
M utils/us_ana_profile.cpp
A utils/us_archive.cpp
A utils/us_archive.h
M utils/us_astfem_math.cpp
A utils/us_csv_data.cpp
A utils/us_csv_data.h
M utils/us_dataIO.cpp
M utils/us_dataIO.h
M utils/us_geturl.h
M utils/us_hydrosim.cpp
M utils/us_link_ssl.cpp
M utils/us_link_ssl.h
M utils/us_math2.h
M utils/us_model.cpp
M utils/us_model.h
M utils/us_report_gmp.cpp
M utils/us_run_protocol.cpp
M utils/us_run_protocol.h
M utils/us_simparms.cpp
M utils/us_xpn_data.cpp
M utils/us_xpn_data.h
Log Message:
-----------
Merge remote-tracking branch 'origin/master' into aaron-dev-test-utils
# Conflicts:
# CMakeLists.txt
# test/utils/CMakeLists.txt
# test/utils/test_us_utils_main.cpp
# utils/CMakeLists.txt
Commit: a423656c7a4997ae177e5406c7b8f846d5cda459
https://github.com/ehb54/ultrascan3/commit/a423656c7a4997ae177e5406c7b8f846d5cda459
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-01 (Tue, 01 Jul 2025)
Changed paths:
M CMakeLists.txt
A admin/test/docker/Dockerfile
A test-docker.sh
M test/utils/CMakeLists.txt
M test/utils/mock/mock_us_db2.h
M test/utils/test_mock_us_db2.cpp
M test/utils/test_mock_us_db2.h
M test/utils/test_us_buffer.cpp
M test/utils/test_us_project.cpp
M test/utils/test_us_project.h
R test/utils/test_us_project_gtest.cpp
R test/utils/test_us_project_gtest.h
R test/utils/test_us_simparams.cpp
R test/utils/test_us_simparams.h
M test/utils/test_us_simparms.cpp
M test/utils/test_us_utils_main.cpp
M utils/CMakeLists.txt
A utils/ius_db2.h
M utils/us_db2.cpp
M utils/us_db2.h
M utils/us_project.cpp
M utils/us_project.h
Log Message:
-----------
dependency injection, docker, and remove duplicates
Compare: https://github.com/ehb54/ultrascan3/compare/d84cc1673555...a423656c7a49
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