[us-commits] [ehb54/ultrascan3] 36fbb7: GMP | R&D : 3. IMPORT -- remove 'todo' section & r...

Thu Jun 26 12:38:05 MDT 2025

  Branch: refs/heads/release-2025-Q2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 36fbb78274624ec179e9b8eb7915d34278539ad6
      https://github.com/ehb54/ultrascan3/commit/36fbb78274624ec179e9b8eb7915d34278539ad6
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-03-05 (Wed, 05 Mar 2025)

  Changed paths:
    M programs/us_convert/us_convert_gui.cpp

  Log Message:
  -----------
  GMP | R&D : 3. IMPORT -- remove 'todo' section & reorginize GUI a bit ...


  Commit: f1a395f2789f8541cd1e9127762368a6e64c5faa
      https://github.com/ehb54/ultrascan3/commit/f1a395f2789f8541cd1e9127762368a6e64c5faa
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-03-05 (Wed, 05 Mar 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  GMP-ABDE : 4. EDITING -- prelim. address all points discussed ...


  Commit: 11f0b57b408e864f2f3071085f8da651d3e0747f
      https://github.com/ehb54/ultrascan3/commit/11f0b57b408e864f2f3071085f8da651d3e0747f
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-03-06 (Thu, 06 Mar 2025)

  Changed paths:
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  GMP-ABDE : EDITING-TO-REPORT -- skip ANALYSIS, proper finishing and switch to rpeort ...


  Commit: 97410a8ee97df46bafab7e6500fbefcee5aae2c7
      https://github.com/ehb54/ultrascan3/commit/97410a8ee97df46bafab7e6500fbefcee5aae2c7
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-03-07 (Fri, 07 Mar 2025)

  Changed paths:
    M programs/us_buoyancy/us_buoyancy.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  GMP-ABDE, ABDE program : 4. EDITING -- when manually editing channel, treat as widget, hide/restore the rest; disbale AUTO fit in the ABDE program upon data load ...


  Commit: 3677b206ae367f13886a6cbd520cec861e631d89
      https://github.com/ehb54/ultrascan3/commit/3677b206ae367f13886a6cbd520cec861e631d89
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-03-10 (Mon, 10 Mar 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  GMP-ABDE: 4. EDITING -- progress on linear-baseline-correction approx. for each channel ...


  Commit: c052b66c83b870c3bb799e7e06bcc4c3277d22ba
      https://github.com/ehb54/ultrascan3/commit/c052b66c83b870c3bb799e7e06bcc4c3277d22ba
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-03-10 (Mon, 10 Mar 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  GMP-ABDE: 4. EDITING -- [few bugs fixed for ] progress on linear-baseline-correction approx. for each channel ...


  Commit: 0ff6374e15149181664cbb20de6d1cad9186315b
      https://github.com/ehb54/ultrascan3/commit/0ff6374e15149181664cbb20de6d1cad9186315b
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-03-10 (Mon, 10 Mar 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  GMP-ABDE: 4. EDITING -- more work on porting ABDE-GMP-editing to existing framework.....


  Commit: 6b3cd7cfa20f5f8ee5092ff3dba00d2965362eaf
      https://github.com/ehb54/ultrascan3/commit/6b3cd7cfa20f5f8ee5092ff3dba00d2965362eaf
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-03-14 (Fri, 14 Mar 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  GMP-ABDE: 4. EDITING -- few bugs fixed as to compatibility of stand-alone & GMP Editing...


  Commit: f40ee9b3921c410c811c4dd28015119f77716208
      https://github.com/ehb54/ultrascan3/commit/f40ee9b3921c410c811c4dd28015119f77716208
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-03-16 (Sun, 16 Mar 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  GMP-ABDE: 4. EDITING -- progress on enabling per-triple modification of the linear baseline corrections vs. per-channel (aka apply to all); ...


  Commit: aa721800844fa90cc321728e5e88d1ef996e12d4
      https://github.com/ehb54/ultrascan3/commit/aa721800844fa90cc321728e5e88d1ef996e12d4
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-03-17 (Mon, 17 Mar 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  GMP-ABDE: 4. EDITING -- [more on..] progress on enabling per-triple modification of the linear baseline corrections vs. per-channel (aka apply to all); ...


  Commit: 9e0347842ec2a652e786fd9127d87af2f05001a5
      https://github.com/ehb54/ultrascan3/commit/9e0347842ec2a652e786fd9127d87af2f05001a5
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-03-18 (Tue, 18 Mar 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  GMP-ABDE: 4. EDITING -- [gui fixes for] progress on enabling per-triple modification of the linear baseline corrections vs. per-channel (aka apply to all); ...


  Commit: 4f3dac583f4111782277ae083ee53e61de85b506
      https://github.com/ehb54/ultrascan3/commit/4f3dac583f4111782277ae083ee53e61de85b506
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-03-19 (Wed, 19 Mar 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  GMP-ABDE: 4. EDITING -- [accomodate both single- and MWL cases] progress on enabling per-triple modification of the linear baseline corrections vs. per-channel (aka apply to all); ...


  Commit: 904a95ffa39e2eda64d9678d2a9f00c26fc96d35
      https://github.com/ehb54/ultrascan3/commit/904a95ffa39e2eda64d9678d2a9f00c26fc96d35
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-03-19 (Wed, 19 Mar 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  GMP-ABDE: 4. EDITING -- bug fixed as to re-attaching to MWVL-to-singleMVL from Run Manager && restoring MWL gui controls ...


  Commit: aaf9d8e9266a23672860160c21a8f559501de1cc
      https://github.com/ehb54/ultrascan3/commit/aaf9d8e9266a23672860160c21a8f559501de1cc
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-03-26 (Wed, 26 Mar 2025)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.h
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  GMP-ABDE: -- switch to the to-be analysis stage; proper ending of editing ...


  Commit: 68acf2c658df1cee16ca38711fd32362de481496
      https://github.com/ehb54/ultrascan3/commit/68acf2c658df1cee16ca38711fd32362de481496
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-03-27 (Thu, 27 Mar 2025)

  Changed paths:
    M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp

  Log Message:
  -----------
  GMP-Audit-trail: -- misspelling fixed ...


  Commit: f7c02bfb100afb53049fbabc7d2f7fb26139d09c
      https://github.com/ehb54/ultrascan3/commit/f7c02bfb100afb53049fbabc7d2f7fb26139d09c
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-03-28 (Fri, 28 Mar 2025)

  Changed paths:
    M gui/us_data_loader.cpp
    M gui/us_data_loader.h
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.h
    M programs/us_autoflow_analysis/us_autoflow_analysis.pro
    M programs/us_com_project/us_com_project.pro
    M programs/us_com_project_academic/us_com_project_academic.pro
    M programs/us_fematch/us_fematch.pro
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.pro
    A programs/us_mwl_species_fit/us_mwl_species_fit_main.cpp
    M programs/us_protocol_dev/us_protocol_dev.pro
    M programs/us_query_rmsd/us_query_rmsd.pro
    M programs/us_reporter_gmp/us_reporter_gmp.pro
    M programs/us_xpn_viewer/us_xpn_viewer.pro

  Log Message:
  -----------
  GMP-ABDE: -- prep. steps for [AUTO]MWL-decomposition ...


  Commit: a909a2130600602250ff2c7d241264159790492f
      https://github.com/ehb54/ultrascan3/commit/a909a2130600602250ff2c7d241264159790492f
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-03-28 (Fri, 28 Mar 2025)

  Changed paths:
    M gui/us_data_loader.cpp
    M gui/us_data_loader.h
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp

  Log Message:
  -----------
  GMP-ABDE: -- further steps for [AUTO]MWL-decomposition ...


  Commit: 5a7280eadbf62110f18d3edc6dad501f2dbc0ed4
      https://github.com/ehb54/ultrascan3/commit/5a7280eadbf62110f18d3edc6dad501f2dbc0ed4
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-03-31 (Mon, 31 Mar 2025)

  Changed paths:
    M gui/us_data_loader.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_mwl_species_fit/us_load_run_noise.cpp
    M programs/us_mwl_species_fit/us_load_run_noise.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h

  Log Message:
  -----------
  GMP-ABDE: -- (1) bug fixed in EDIT as for exclusion of all but last scan for each triple; (2) more work on porting MWL species deconv. into GMP-ABDE's ANALYSIS stage...


  Commit: 37a603409bfa0487097e0e2068dc1f6ff0084805
      https://github.com/ehb54/ultrascan3/commit/37a603409bfa0487097e0e2068dc1f6ff0084805
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-04-01 (Tue, 01 Apr 2025)

  Changed paths:
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h

  Log Message:
  -----------
  GMP-ABDE: 5. ANALYSIS -- automated deconvolution for MWL data...


  Commit: e85004ebe04cc4e5bcac416638363b50c624dfaa
      https://github.com/ehb54/ultrascan3/commit/e85004ebe04cc4e5bcac416638363b50c624dfaa
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-04-02 (Wed, 02 Apr 2025)

  Changed paths:
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h
    M utils/us_dataIO.cpp
    M utils/us_dataIO.h

  Log Message:
  -----------
  GMP-ABDE: 5. ANALYSIS -- apply extinction profiles from DB (protocol) for each analyte (and buffer if specified); read and apply linear base-line corrections for each triple from edit profiles; && loop over triples & deconvolute...


  Commit: 16f83a88ccafb90a5ae28bdfbd2302738f592776
      https://github.com/ehb54/ultrascan3/commit/16f83a88ccafb90a5ae28bdfbd2302738f592776
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-04-03 (Thu, 03 Apr 2025)

  Changed paths:
    M .github/workflows/codeql-analysis.yml
    A CITATION.cff
    M CMakeLists.txt
    A doc/calc_model_coefficient_documentation.pdf
    A doc/calc_timestate_documentation.pdf
    M gui/us_buffer_gui.cpp
    M gui/us_buffer_gui.h
    M gui/us_extinction_gui.cpp
    M gui/us_model_gui.cpp
    M gui/us_model_gui.h
    M gui/us_rotor_gui.cpp
    M gui/us_rotor_gui.h
    M gui/us_select_item.cpp
    M gui/us_select_item.h
    M gui/us_sim_params_gui.cpp
    M gui/us_sim_params_gui.h
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_astfem_sim/us_astfem_sim.h
    M programs/us_astfem_sim/us_clipdata.h
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_config/us_database.cpp
    M programs/us_config/us_database.h
    M programs/us_convert/us_convert.cpp
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_fematch/us_fematch.cpp
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M programs/us_mpi_analysis/us_mpi_analysis.h
    R programs/us_mwl_db_query/us_mwl_db_query.pro
    R programs/us_mwl_db_query/us_mwl_pltctrl.cpp
    R programs/us_mwl_db_query/us_mwl_pltctrl.h
    R programs/us_mwl_db_query/us_mwl_run.cpp
    R programs/us_mwl_db_query/us_mwl_run.h
    R programs/us_mwl_db_query/us_mwlr_viewer.cpp
    R programs/us_mwl_db_query/us_mwlr_viewer.h
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M test/utils/CMakeLists.txt
    A test/utils/test_us_simparams.cpp
    A test/utils/test_us_simparams.h
    M test/utils/test_us_utils_main.cpp
    M utils/CMakeLists.txt
    R utils/calc_coefficient_documentation.pdf
    M utils/us_astfem_math.cpp
    M utils/us_model.cpp
    M utils/us_model.h
    M utils/us_simparms.cpp

  Log Message:
  -----------
  Merge pull request #199 from ehb54/master

Merge current master to alexey-dev-ussue425


  Commit: 5e45e203a53206ff829c003d99daea34b0c249fc
      https://github.com/ehb54/ultrascan3/commit/5e45e203a53206ff829c003d99daea34b0c249fc
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-04-03 (Thu, 03 Apr 2025)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.h
    M programs/us_autoflow_analysis/us_autoflow_analysis.pro
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_convert/us_convert_gui.h
    M programs/us_fematch/us_fematch.pro
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_query_rmsd/us_query_rmsd.pro
    M programs/us_reporter_gmp/us_reporter_gmp.pro
    M programs/us_xpn_viewer/us_xpn_viewer.pro

  Log Message:
  -----------
  GMP-ABDE: 5. ANALYSIS -- generated SSF data after MWL-deconv. are now auto-saved into DB as a separate records...


  Commit: b0112a373e29c51f8ba74849d5b0127d9d8978ad
      https://github.com/ehb54/ultrascan3/commit/b0112a373e29c51f8ba74849d5b0127d9d8978ad
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-04-04 (Fri, 04 Apr 2025)

  Changed paths:
    M programs/us_abde/us_abde_main.cpp
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_abde/us_norm_profile.h
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.h
    M programs/us_autoflow_analysis/us_autoflow_analysis.pro
    M programs/us_com_project/us_com_project.pro
    M programs/us_com_project_academic/us_com_project_academic.pro
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_fematch/us_fematch.pro
    M programs/us_protocol_dev/us_protocol_dev.pro
    M programs/us_query_rmsd/us_query_rmsd.pro
    M programs/us_reporter_gmp/us_reporter_gmp.pro

  Log Message:
  -----------
  GMP-ABDE: 5. ANALYSIS -- port stand-alone abde normalizer to GMP framework; auto-upload deconv. data from previos mwl-spiecies-fit...


  Commit: fd5c80d8177c74905ced72a499d1ba162873b16d
      https://github.com/ehb54/ultrascan3/commit/fd5c80d8177c74905ced72a499d1ba162873b16d
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-04-08 (Tue, 08 Apr 2025)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_convert/us_experiment.cpp

  Log Message:
  -----------
  GMP-ABDE: 5. ANALYSIS -- supress all msgs related to DB-save of SSF data in case of already saved...


  Commit: 66b456db36e56b38857266164eb4f6fe56dbce6d
      https://github.com/ehb54/ultrascan3/commit/66b456db36e56b38857266164eb4f6fe56dbce6d
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-04-09 (Wed, 09 Apr 2025)

  Changed paths:
    M programs/us_abde/us_abde_main.cpp
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_abde/us_norm_profile.h

  Log Message:
  -----------
  GMP-ABDE: 5. ANALYSIS -- prep. for channel-by-channel processing in the normalizer program...


  Commit: d98c3484a15df726b143465f2bfbfcf71959a18a
      https://github.com/ehb54/ultrascan3/commit/d98c3484a15df726b143465f2bfbfcf71959a18a
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-04-11 (Fri, 11 Apr 2025)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_abde/us_norm_profile.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.pro
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_xpn_viewer/us_xpn_viewer.pro

  Log Message:
  -----------
  GMP-ABDE: 5. ANALYSIS -- pass ranges set in reportItems for each channels into normalizer program...


  Commit: 2eb1848d73714c7b61fe515ca0e88a8087a20486
      https://github.com/ehb54/ultrascan3/commit/2eb1848d73714c7b61fe515ca0e88a8087a20486
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-04-29 (Tue, 29 Apr 2025)

  Changed paths:
    M admin/release/buildpkg.pl
    M admin/release/redhat/Dockerfile
    M admin/release/ubuntu/Dockerfile
    A admin/release/ubuntu/mathops.h
    M admin/release/ubuntu_qt6/Dockerfile
    M admin/us_branch/us_branch.php
    R doc/manual/2dsa.body
    A doc/manual/2dsa/2dsa.body
    A doc/manual/2dsa/2dsa_advan.body
    A doc/manual/2dsa/2dsa_analvv.body
    A doc/manual/2dsa/2dsa_analys.body
    R doc/manual/2dsa_advan.body
    R doc/manual/2dsa_analvv.body
    R doc/manual/2dsa_analys.body
    M doc/manual/Makefile
    M doc/manual/README
    M doc/manual/astfem_sim.body
    M doc/manual/cfa_viewer.body
    M doc/manual/colorgradient.body
    M doc/manual/config.body
    M doc/manual/config2.body
    M doc/manual/convert.body
    M doc/manual/data_loader.body
    M doc/manual/ddist_combine.body
    M doc/manual/dens_match.body
    A doc/manual/experiment/experiment_cells.body
    A doc/manual/experiment/experiment_general.body
    A doc/manual/experiment/experiment_photomult.body
    A doc/manual/experiment/experiment_rotor.body
    A doc/manual/experiment/experiment_solutions.body
    A doc/manual/experiment/experiment_speeds.body
    A doc/manual/experiment/experiment_upload.body
    R doc/manual/experiment_cells.body
    R doc/manual/experiment_general.body
    R doc/manual/experiment_photomult.body
    R doc/manual/experiment_rotor.body
    R doc/manual/experiment_solutions.body
    R doc/manual/experiment_speeds.body
    R doc/manual/experiment_upload.body
    M doc/manual/export_legacy.body
    R doc/manual/fe_match.body
    A doc/manual/fe_match/fe_match.body
    A doc/manual/fe_match/fe_match_adv.body
    A doc/manual/fe_match/fe_match_controls.body
    A doc/manual/fe_match/fe_match_lddat.body
    A doc/manual/fe_match/fe_match_simulate.body
    R doc/manual/fe_match_adv.body
    R doc/manual/fe_match_controls.body
    R doc/manual/fe_match_lddat.body
    R doc/manual/fe_match_simulate.body
    M doc/manual/fit_meniscus.body
    M doc/manual/ga_initialize.body
    A doc/manual/gmp/gmp.body
    A doc/manual/gmp/gmp_audit_trail.body
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    M doc/manual/index.body
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    R doc/manual/load_auc.body
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    R doc/manual/load_model_dis-MID.body
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    M doc/manual/mainstyle.css
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    A doc/manual/sassoc.body
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    M doc/manual/vhw_enhanced.body
    M gui/us_select_item.cpp
    M makeall.sh
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_esigner_gmp/us_esigner_gmp.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
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    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M utils/us_ana_profile.cpp
    M utils/us_geturl.h

  Log Message:
  -----------
  Merge pull request #211 from ehb54/master

add current master into alxey-dev-issue425


  Commit: ee423e5ad3a0dd89e1bd4dea5cdf682d1292d0de
      https://github.com/ehb54/ultrascan3/commit/ee423e5ad3a0dd89e1bd4dea5cdf682d1292d0de
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-04-29 (Tue, 29 Apr 2025)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_abde/us_norm_profile.h

  Log Message:
  -----------
  GMP-ABDE: 5. ANALYSIS -- split all normalization operations by channel & save actions and normalizations accordingly...


  Commit: 64a2c9f9d597adb905f324ddb340d2e1da7852aa
      https://github.com/ehb54/ultrascan3/commit/64a2c9f9d597adb905f324ddb340d2e1da7852aa
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-01 (Thu, 01 May 2025)

  Changed paths:
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h

  Log Message:
  -----------
  GMP-ABDE: 1. EXP. setting -- bug fixed causing crash in rare cases when loaded investigator didn't have any solutions in the DB, and changing to investigator with the solutions in the DB did not updated solution list properly (problem existed only for ABDE type)...


  Commit: d42e72c78bde90edf16acbe07b71861d24f29994
      https://github.com/ehb54/ultrascan3/commit/d42e72c78bde90edf16acbe07b71861d24f29994
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-01 (Thu, 01 May 2025)

  Changed paths:
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  GMP-ABDE: 1. EXP. setting -- [prevent crash if there is still no solutions on the DB, inform user, close the program] bug fixed causing crash in rare cases when loaded investigator didn't have any solutions in the DB, and changing to investigator with the solutions in the DB did not updated solution list properly (problem existed only for ABDE type)...


  Commit: 5a187617baa3311542a00dc75a014971bdd522d8
      https://github.com/ehb54/ultrascan3/commit/5a187617baa3311542a00dc75a014971bdd522d8
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-02 (Fri, 02 May 2025)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_abde/us_norm_profile.h

  Log Message:
  -----------
  GMP-ABDE: 5. ANALYSIS -- before profiles saving, compose JSON with info on each channel for normalization (and ranges intersections with integral curves in future)...


  Commit: f7f28efef6269efddcc6b39f8b6dc6971b130ec9
      https://github.com/ehb54/ultrascan3/commit/f7f28efef6269efddcc6b39f8b6dc6971b130ec9
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-05 (Mon, 05 May 2025)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  GMP-ABDE: 1. EXP. -- create 2 additional records on DB upon GMP run submission for later analysis...


  Commit: 18f4e3adbc3f1d7c659dea68f8e8499c16e27b0d
      https://github.com/ehb54/ultrascan3/commit/18f4e3adbc3f1d7c659dea68f8e8499c16e27b0d
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-09 (Fri, 09 May 2025)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_abde/us_norm_profile.h

  Log Message:
  -----------
  GMP-ABDE: 5. ANALYSIS (MWL-DECONV.) -- compute percentages for APRofile ranges per channel per range, pass the info to json to be saved in DB & used in reporting; clean plots legends, colors etc.; keep track on prcessed channels and on normalization before enabling to save profiles...


  Commit: 75cc0ecc55b7bb99dbcfdb7441600f5f86bd7f9d
      https://github.com/ehb54/ultrascan3/commit/75cc0ecc55b7bb99dbcfdb7441600f5f86bd7f9d
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-11 (Sun, 11 May 2025)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_abde/us_norm_profile.h
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp

  Log Message:
  -----------
  GMP-ABDE: 5. ANALYSIS -- progress on accomodating both MWL-DECONV. & single-WL ABDE types in GMP analysis...


  Commit: 4174ae5ad04bc30d060301483dff29cafaddaf16
      https://github.com/ehb54/ultrascan3/commit/4174ae5ad04bc30d060301483dff29cafaddaf16
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-11 (Sun, 11 May 2025)

  Changed paths:
    M gui/us_data_loader.cpp
    M gui/us_data_loader.h
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_abde/us_norm_profile.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h

  Log Message:
  -----------
  GMP-ABDE: 5. ANALYSIS -- [More] progress on accomodating both MWL-DECONV. & single-WL ABDE types in GMP analysis...


  Commit: fe10072d2d56c1c83e145faaefbf17146a92413c
      https://github.com/ehb54/ultrascan3/commit/fe10072d2d56c1c83e145faaefbf17146a92413c
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-12 (Mon, 12 May 2025)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h

  Log Message:
  -----------
  GMP-ABDE: 1. EXP. -- hierarchical checks before run submission enforcing number of conditions for solutions, extinct. profiles, ranges - both for SWL and MWL-DECONV. experiments...


  Commit: 0228986fa9a4a3653d802eaed73eed6e29e113d2
      https://github.com/ehb54/ultrascan3/commit/0228986fa9a4a3653d802eaed73eed6e29e113d2
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-13 (Tue, 13 May 2025)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_abde/us_norm_profile.h

  Log Message:
  -----------
  GMP-ABDE: 5. ANALYSIS -- [More, more] progress on accomodating both MWL-DECONV. & single-WL ABDE types in GMP analysis...


  Commit: 1a9fce71cc056ef952dae2fa67512802aa7e73d1
      https://github.com/ehb54/ultrascan3/commit/1a9fce71cc056ef952dae2fa67512802aa7e73d1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-13 (Tue, 13 May 2025)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_abde/us_norm_profile.h
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.h

  Log Message:
  -----------
  GMP-ABDE: 5. ANALYSIS -- implement (1) switch from  MWL-DECONV. || single-WL ABDE types in GMP analysis to REPORT; (2) switch from ABDE-analysis to Run Manager, both when just want to return, or when ABDE profiles already saved form different session...


  Commit: bd8f08dc9de642c5dfdf5c3592d0d5b6192245f2
      https://github.com/ehb54/ultrascan3/commit/bd8f08dc9de642c5dfdf5c3592d0d5b6192245f2
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-14 (Wed, 14 May 2025)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp

  Log Message:
  -----------
  GMP-ABDE: 5. ANALYSIS -- pass & store in DB additional info required for ABDE plots restoration in REPORT...


  Commit: 8a6e905de9cba1b09ca1c9205ea1e52462e9a266
      https://github.com/ehb54/ultrascan3/commit/8a6e905de9cba1b09ca1c9205ea1e52462e9a266
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-14 (Wed, 14 May 2025)

  Changed paths:
    M gui/us_load_auc.cpp
    M gui/us_load_auc.h
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_abde/us_norm_profile.h

  Log Message:
  -----------
  GMP-ABDE: 5. ANALYSIS -- major prep. steps for reconstructing ABDE profile plots & ranges-percentages in the subsequesnt REPORT stage...


  Commit: a91bab7f8a743643cd2135af67bb247dd6dfe833
      https://github.com/ehb54/ultrascan3/commit/a91bab7f8a743643cd2135af67bb247dd6dfe833
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-15 (Thu, 15 May 2025)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_abde/us_norm_profile.h

  Log Message:
  -----------
  GMP-ABDE: 5. ANALYSIS -- ALL steps for reconstructing ABDE profile plots & ranges-percentages in the subsequesnt REPORT stage...


  Commit: c5e1f54ccc1dd1e99d7c360d26d3cfb2c3973443
      https://github.com/ehb54/ultrascan3/commit/c5e1f54ccc1dd1e99d7c360d26d3cfb2c3973443
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-16 (Fri, 16 May 2025)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_abde/us_norm_profile.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h

  Log Message:
  -----------
  GMP-ABDE: 5. ANALYSIS -- [ADD passing RMSD of the spectral deconv. for each channel into ABDE norm & later REPORT] ALL steps for reconstructing ABDE profile plots & ranges-percentages in the subsequesnt REPORT stage...


  Commit: 84405506d08408364790332c02105f79d00f5df1
      https://github.com/ehb54/ultrascan3/commit/84405506d08408364790332c02105f79d00f5df1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-16 (Fri, 16 May 2025)

  Changed paths:
    M gui/us_gui_util.cpp
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_abde/us_norm_profile.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  GMP-ABDE: 5. ANALYSIS -- progress on ABDE GMP reporting...


  Commit: 78f1a182dfa7f71b5cc44c8ace4cd9fa215c6405
      https://github.com/ehb54/ultrascan3/commit/78f1a182dfa7f71b5cc44c8ace4cd9fa215c6405
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-19 (Mon, 19 May 2025)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_abde/us_norm_profile.h
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  GMP-ABDE: 5. ANALYSIS -- [MORE ] progress on ABDE GMP reporting...


  Commit: 0a2beabcae1b687c5687c4b2450fd1af74dfc220
      https://github.com/ehb54/ultrascan3/commit/0a2beabcae1b687c5687c4b2450fd1af74dfc220
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-19 (Mon, 19 May 2025)

  Changed paths:
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M utils/us_report_gmp.cpp

  Log Message:
  -----------
  Merge pull request #220 from ehb54/master

Merge latest master into alexey-dev-issue425 (ABDE dev.)


  Commit: ba9596172bb5ac437f7715f3df79e08a1e249dbb
      https://github.com/ehb54/ultrascan3/commit/ba9596172bb5ac437f7715f3df79e08a1e249dbb
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-19 (Mon, 19 May 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP-ABDE: 5. ANALYSIS -- [MORE 11] progress on ABDE GMP reporting...


  Commit: 183b6de5faf3ba6ce984692955573dbabb2fb8e4
      https://github.com/ehb54/ultrascan3/commit/183b6de5faf3ba6ce984692955573dbabb2fb8e4
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-19 (Mon, 19 May 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP-ABDE: 5. ANALYSIS -- [MORE 22] progress on ABDE GMP reporting...


  Commit: 57366bd055ebc2cbe566db6512a5cb05df5921e2
      https://github.com/ehb54/ultrascan3/commit/57366bd055ebc2cbe566db6512a5cb05df5921e2
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-20 (Tue, 20 May 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP-ABDE: 6. REPORT -- in every chanels report, indicate if it's MWL-Deconv. or not...


  Commit: a6539c9236ab2859156a08cf63545c460a93a3c1
      https://github.com/ehb54/ultrascan3/commit/a6539c9236ab2859156a08cf63545c460a93a3c1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-27 (Tue, 27 May 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  GMP REPORTER: stand_alone -- adapt and modify stand-alone program to generate custom reports for ABDE experiments...


  Commit: 26b0b429314fbc2915a25a1c3e54c86adfbfa497
      https://github.com/ehb54/ultrascan3/commit/26b0b429314fbc2915a25a1c3e54c86adfbfa497
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-28 (Wed, 28 May 2025)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp

  Log Message:
  -----------
  GMP-ABDE: 5. ANALYSIS -- bug fixed: do not try to read (unexisting) RMSDs for single-wvl type of exp....


  Commit: 2434b5657469571d06a4087ec9ce699ab1170a0a
      https://github.com/ehb54/ultrascan3/commit/2434b5657469571d06a4087ec9ce699ab1170a0a
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-28 (Wed, 28 May 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  GMP REPORTER: stand_alone -- work on modified per-channel section; (simpler) 2-level tree, reflect protocols parms. for [auto]- & user-selected items for [custom]-report...


  Commit: cf6bc031cac6df21321a972bd936ec2a28cd6be6
      https://github.com/ehb54/ultrascan3/commit/cf6bc031cac6df21321a972bd936ec2a28cd6be6
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-29 (Thu, 29 May 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  GMP REPORTER: stand_alone && GMP -- USer-interactions: 5. ANALYSIS - different processing for velocity and ABDE types; make sure all timestamps in UTC to be consistent with the rest of report parts...


  Commit: 4407f9e2833642dd3c71488b515b5960db37ba8e
      https://github.com/ehb54/ultrascan3/commit/4407f9e2833642dd3c71488b515b5960db37ba8e
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-30 (Fri, 30 May 2025)

  Changed paths:
    M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
    M programs/us_audit_trail_gmp/us_audit_trail_gmp.h
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [Same for Audit Trail Program -- ] GMP REPORTER: stand_alone && GMP -- USer-interactions: 5. ANALYSIS - different processing for velocity and ABDE types; make sure all timestamps in UTC to be consistent with the rest of report parts...


  Commit: fdf13a360a448b311b961c794c8bc49115d6eb0c
      https://github.com/ehb54/ultrascan3/commit/fdf13a360a448b311b961c794c8bc49115d6eb0c
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-30 (Fri, 30 May 2025)

  Changed paths:
    M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp

  Log Message:
  -----------
  [BUG fixed  -- GUI generation for Analysis part of audit ][Same for Audit Trail Program -- ] GMP REPORTER: stand_alone && GMP -- USer-interactions: 5. ANALYSIS - different processing for velocity and ABDE types; make sure all timestamps in UTC to be consistent with the rest of report parts...


  Commit: 8b106375d8b90fc30ae4722410cdb0a8b8d44f36
      https://github.com/ehb54/ultrascan3/commit/8b106375d8b90fc30ae4722410cdb0a8b8d44f36
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-30 (Fri, 30 May 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  GMP REPORTER: stand_alone && GMP -- add UTC timestamps for analysis & aditing to each channel's info...


  Commit: a5fafaea78544856e935ea197d76bd9a23ec2004
      https://github.com/ehb54/ultrascan3/commit/a5fafaea78544856e935ea197d76bd9a23ec2004
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-05-30 (Fri, 30 May 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  GMP REPORTER: stand_alone && GMP -- add info on analyte(s) and buffer (if selected) used in MWL-deconv. to each channel's analysis sections...


  Commit: 61bf76cfc06ef318b0751e2b1b55e2d568d0d99f
      https://github.com/ehb54/ultrascan3/commit/61bf76cfc06ef318b0751e2b1b55e2d568d0d99f
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-06-01 (Sun, 01 Jun 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP REPORTER: GMP -- [bug fixed --] building per-channel tree in background is still required to re-use stand-alone program in ABDE-reporting GMP stage...


  Commit: a855b7702e1f3b865c7f926cd18c111bb863102d
      https://github.com/ehb54/ultrascan3/commit/a855b7702e1f3b865c7f926cd18c111bb863102d
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-06-01 (Sun, 01 Jun 2025)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp

  Log Message:
  -----------
  GMP REPORTER: GMP -- [bug fixed --] properly close/delete ABDE-normalizer widget before reattaching (esp. with different types of analsyis), and to prevent memory leak...


  Commit: 740e6773a1733535a6ffbef1e8f336f0cc569dbc
      https://github.com/ehb54/ultrascan3/commit/740e6773a1733535a6ffbef1e8f336f0cc569dbc
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-06-01 (Sun, 01 Jun 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP REPORTER: GMP -- restore deletion of the primary autoflow record after report generation (was suppressed for tests)...


  Commit: 875b77a5bc8555b51afa86826f004882b5c5bd3c
      https://github.com/ehb54/ultrascan3/commit/875b77a5bc8555b51afa86826f004882b5c5bd3c
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-06-02 (Mon, 02 Jun 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP REPORTER: GMP & stans-alone -- revised AProfile sections for each channel; ref. & used refs.  channels info ...


  Commit: 2704fd06df2d50c8eb569579d4cecebe4cbef948
      https://github.com/ehb54/ultrascan3/commit/2704fd06df2d50c8eb569579d4cecebe4cbef948
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-06-02 (Mon, 02 Jun 2025)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_abde/us_norm_profile.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  GMP REPORTER: GMP & stans-alone -- pass info for meniscus positions manualy seletced from etit-to-analysis-to-report ...


  Commit: bb17e697fa40e2e1b1d9cb8f30302a496ca6d107
      https://github.com/ehb54/ultrascan3/commit/bb17e697fa40e2e1b1d9cb8f30302a496ca6d107
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-06-03 (Tue, 03 Jun 2025)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_abde/us_norm_profile.h
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  GMP REPORTER: GMP & stans-alone -- prep.steps for getting distributions info from abde-norm. & generating per-channel .csv files with hyperlinks in report...


  Commit: 991d00bc2c7e70807593a0fbb7d7aab905d6c108
      https://github.com/ehb54/ultrascan3/commit/991d00bc2c7e70807593a0fbb7d7aab905d6c108
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-06-04 (Wed, 04 Jun 2025)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_abde/us_norm_profile.h
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  ABDE-GMP 5.ANALYSIS && 6. REPORT: add hyperlinks to .csv formatted files for ABDE profiles (r-pos, dna, prot, integr.-dna, integr-protein) for each channel; add option to show/hide ranges passed from AProfile in abde-plots; lots of bugs fixed as to proper abde plots generation...


  Commit: c0ee5b659e94c0d5673e0a77bf318d22ca82637a
      https://github.com/ehb54/ultrascan3/commit/c0ee5b659e94c0d5673e0a77bf318d22ca82637a
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-06-04 (Wed, 04 Jun 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  ABDE-GMP 5.ANALYSIS && 6. REPORT: bug fixed for different extracting menisc. info & .csv file generation for SWL- and MWL- cases...


  Commit: eab6517df1299fd0bb557c89ec6a7612074e88a3
      https://github.com/ehb54/ultrascan3/commit/eab6517df1299fd0bb557c89ec6a7612074e88a3
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-06-04 (Wed, 04 Jun 2025)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp

  Log Message:
  -----------
  ABDE-GMP 5.ANALYSIS && 6. REPORT: use rotating list of symbols to plot aprofile's ranges in ABDE sitributions for each channel...


  Commit: e7ce0a2755510be41ed631543dc4b56f1343e95f
      https://github.com/ehb54/ultrascan3/commit/e7ce0a2755510be41ed631543dc4b56f1343e95f
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-06-10 (Tue, 10 Jun 2025)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  ABDE-GMP 5.ANALYSIS && 6. REPORT: latest updates for analysis and report...


  Commit: 12dd6370e011685566749afe283898a6bfa25c9c
      https://github.com/ehb54/ultrascan3/commit/12dd6370e011685566749afe283898a6bfa25c9c
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-06-16 (Mon, 16 Jun 2025)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  ABDE-GMP 5.ANALYSIS && 6. REPORT: diff. colors for ANBDE plots && corresponding legends...


  Commit: a12c2af02d5e024c4b0146b0053e2f6e89a6938f
      https://github.com/ehb54/ultrascan3/commit/a12c2af02d5e024c4b0146b0053e2f6e89a6938f
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-06-20 (Fri, 20 Jun 2025)

  Changed paths:
    M gui/us_csv_loader.cpp
    M gui/us_csv_loader.h
    M gui/us_predict1.cpp
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h
    M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
    M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h
    M us_somo/develop/src/us_hydrodyn_saxs_hplc_makeiq.cpp
    M utils/us_hydrosim.cpp
    M utils/us_link_ssl.cpp
    M utils/us_link_ssl.h
    M utils/us_model.cpp
    M utils/us_model.h

  Log Message:
  -----------
  Merge pull request #230 from ehb54/master

Add all master commits to alexey-dev-issue425


  Commit: 0244ffea2b66f290eba21f8350a4b528601b5df8
      https://github.com/ehb54/ultrascan3/commit/0244ffea2b66f290eba21f8350a4b528601b5df8
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-06-22 (Sun, 22 Jun 2025)

  Changed paths:
    M gui/us_widgets.cpp
    M gui/us_widgets.h
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp

  Log Message:
  -----------
  GMP && R&D - ABDE-GMP test: few bugs fixed...


  Commit: 9f5deea4c10e1c3c8abb9ec595158179385c8cd3
      https://github.com/ehb54/ultrascan3/commit/9f5deea4c10e1c3c8abb9ec595158179385c8cd3
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-06-22 (Sun, 22 Jun 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP && R&D - ABDE-GMP test: [1]few bugs fixed...


  Commit: 413c8b44dc84893c703c037cdb4b18e3da7deb21
      https://github.com/ehb54/ultrascan3/commit/413c8b44dc84893c703c037cdb4b18e3da7deb21
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-06-26 (Thu, 26 Jun 2025)

  Changed paths:
    M gui/us_data_loader.cpp
    M gui/us_data_loader.h
    M gui/us_gui_util.cpp
    M gui/us_load_auc.cpp
    M gui/us_load_auc.h
    M gui/us_widgets.cpp
    M gui/us_widgets.h
    M programs/us_abde/us_abde_main.cpp
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_abde/us_norm_profile.h
    M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
    M programs/us_audit_trail_gmp/us_audit_trail_gmp.h
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.h
    M programs/us_autoflow_analysis/us_autoflow_analysis.pro
    M programs/us_buoyancy/us_buoyancy.cpp
    M programs/us_com_project/us_com_project.pro
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_com_project_academic/us_com_project_academic.pro
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_convert/us_convert_gui.h
    M programs/us_convert/us_experiment.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_fematch/us_fematch.pro
    M programs/us_mwl_species_fit/us_load_run_noise.cpp
    M programs/us_mwl_species_fit/us_load_run_noise.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.pro
    A programs/us_mwl_species_fit/us_mwl_species_fit_main.cpp
    M programs/us_protocol_dev/us_protocol_dev.pro
    M programs/us_query_rmsd/us_query_rmsd.pro
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_reporter_gmp/us_reporter_gmp.pro
    M programs/us_xpn_viewer/us_xpn_viewer.pro
    M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
    M utils/us_dataIO.cpp
    M utils/us_dataIO.h

  Log Message:
  -----------
  Merge pull request #231 from ehb54/alexey-dev-issue425

alexey-dev-issue425 into master: ABDE-GMP-framework


  Commit: d218c8ca848d27e64e13e92263dbfde7a0daa09c
      https://github.com/ehb54/ultrascan3/commit/d218c8ca848d27e64e13e92263dbfde7a0daa09c
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-06-26 (Thu, 26 Jun 2025)

  Changed paths:
    M gui/us_data_loader.cpp
    M gui/us_data_loader.h
    M gui/us_gui_util.cpp
    M gui/us_load_auc.cpp
    M gui/us_load_auc.h
    M gui/us_widgets.cpp
    M gui/us_widgets.h
    M programs/us_abde/us_abde_main.cpp
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_abde/us_norm_profile.h
    M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
    M programs/us_audit_trail_gmp/us_audit_trail_gmp.h
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.h
    M programs/us_autoflow_analysis/us_autoflow_analysis.pro
    M programs/us_buoyancy/us_buoyancy.cpp
    M programs/us_com_project/us_com_project.pro
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_com_project_academic/us_com_project_academic.pro
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_convert/us_convert_gui.h
    M programs/us_convert/us_experiment.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_fematch/us_fematch.pro
    M programs/us_mwl_species_fit/us_load_run_noise.cpp
    M programs/us_mwl_species_fit/us_load_run_noise.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.pro
    A programs/us_mwl_species_fit/us_mwl_species_fit_main.cpp
    M programs/us_protocol_dev/us_protocol_dev.pro
    M programs/us_query_rmsd/us_query_rmsd.pro
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_reporter_gmp/us_reporter_gmp.pro
    M programs/us_xpn_viewer/us_xpn_viewer.pro
    M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
    M utils/us_dataIO.cpp
    M utils/us_dataIO.h

  Log Message:
  -----------
  Merge pull request #232 from ehb54/master

Master to release-2025-Q2


Compare: https://github.com/ehb54/ultrascan3/compare/cd907ffab32e...d218c8ca848d

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