[us-commits] [ehb54/ultrascan3] b91982: Prot_DEV -- dataDisk type of data to reuse in Prot...

alexsav815 noreply at github.com
Thu Nov 20 17:30:06 MST 2025


  Branch: refs/heads/alexey-dev-issue651
  Home:   https://github.com/ehb54/ultrascan3
  Commit: b91982360f02fc7d35efdbb917d2e08596c14560
      https://github.com/ehb54/ultrascan3/commit/b91982360f02fc7d35efdbb917d2e08596c14560
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-11-03 (Mon, 03 Nov 2025)

  Changed paths:
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_protocol_dev/us_protocol_dev_gui.cpp

  Log Message:
  -----------
  Prot_DEV -- dataDisk type of data to reuse in Prot Dev....


  Commit: 04ac91d9174e6d65816307faf1663175f2de6e72
      https://github.com/ehb54/ultrascan3/commit/04ac91d9174e6d65816307faf1663175f2de6e72
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-11-03 (Mon, 03 Nov 2025)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  [1]Prot_DEV -- dataDisk type of data to reuse in Prot Dev....


  Commit: a107deb079b8089a73b101015763d8462f3aa43c
      https://github.com/ehb54/ultrascan3/commit/a107deb079b8089a73b101015763d8462f3aa43c
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-11-03 (Mon, 03 Nov 2025)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  [2]Prot_DEV -- dataDisk type of data to reuse in Prot Dev....


  Commit: 77345534ee55741a3995fabe13f6faf8e1c5f881
      https://github.com/ehb54/ultrascan3/commit/77345534ee55741a3995fabe13f6faf8e1c5f881
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-11-03 (Mon, 03 Nov 2025)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp

  Log Message:
  -----------
  [3]Prot_DEV -- dataDisk type of data to reuse in Prot Dev....


  Commit: 7fc94237d997b68034bf17cbc314276cab5bc394
      https://github.com/ehb54/ultrascan3/commit/7fc94237d997b68034bf17cbc314276cab5bc394
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-11-04 (Tue, 04 Nov 2025)

  Changed paths:
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_convert/us_convert_gui.h
    M programs/us_experiment/us_experiment.pro
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h

  Log Message:
  -----------
  [4]Prot_DEV -- Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....


  Commit: cff3d662e38213f7cc385ca99277c08dec6b43aa
      https://github.com/ehb54/ultrascan3/commit/cff3d662e38213f7cc385ca99277c08dec6b43aa
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-11-04 (Tue, 04 Nov 2025)

  Changed paths:
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_convert/us_convert_gui.h

  Log Message:
  -----------
  [55]Prot_DEV -- Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....


  Commit: c280a617392dd55877185f3ece5a41202145aa63
      https://github.com/ehb54/ultrascan3/commit/c280a617392dd55877185f3ece5a41202145aa63
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-11-04 (Tue, 04 Nov 2025)

  Changed paths:
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_protocol_dev/us_protocol_dev_gui.cpp
    M programs/us_protocol_dev/us_protocol_dev_gui.h

  Log Message:
  -----------
  [6]Prot_DEV -- Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....


  Commit: 1e35e7a3947fa08e0fd5e651641d80217b2f5337
      https://github.com/ehb54/ultrascan3/commit/1e35e7a3947fa08e0fd5e651641d80217b2f5337
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-11-04 (Tue, 04 Nov 2025)

  Changed paths:
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  [7]Prot_DEV -- Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....


  Commit: 86e9df690a84fc07f0443a794532a3a16247575b
      https://github.com/ehb54/ultrascan3/commit/86e9df690a84fc07f0443a794532a3a16247575b
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-11-04 (Tue, 04 Nov 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [8]Prot_DEV -- Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....


  Commit: 47aced1a7b9dd464c9e3233c131bffd2e5a43590
      https://github.com/ehb54/ultrascan3/commit/47aced1a7b9dd464c9e3233c131bffd2e5a43590
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-11-05 (Wed, 05 Nov 2025)

  Changed paths:
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  [9]Prot_DEV -- Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....


  Commit: bf902b2991efbb3e2fc1009ef6800c635b5e7ea0
      https://github.com/ehb54/ultrascan3/commit/bf902b2991efbb3e2fc1009ef6800c635b5e7ea0
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-11-05 (Wed, 05 Nov 2025)

  Changed paths:
    M programs/us_convert/us_convert_gui.cpp

  Log Message:
  -----------
  [10]Prot_DEV -- [run names for sunsequent PDs] Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....


  Commit: d24d57352af04940c3cf6e6d3c87044a795c1f32
      https://github.com/ehb54/ultrascan3/commit/d24d57352af04940c3cf6e6d3c87044a795c1f32
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-11-05 (Wed, 05 Nov 2025)

  Changed paths:
    M programs/us_convert/us_convert_gui.cpp

  Log Message:
  -----------
  [10a]Prot_DEV -- [run names for sunsequent PDs] Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....


  Commit: 21d57858d1f94bc1c02fbb7004faa197e3e44d77
      https://github.com/ehb54/ultrascan3/commit/21d57858d1f94bc1c02fbb7004faa197e3e44d77
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-11-05 (Wed, 05 Nov 2025)

  Changed paths:
    M programs/us_convert/us_convert_gui.cpp

  Log Message:
  -----------
  [11a]Prot_DEV -- [run names for sunsequent PDs] Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....


  Commit: 1b35ec93929d2ec945666589dfacd9390605a4c1
      https://github.com/ehb54/ultrascan3/commit/1b35ec93929d2ec945666589dfacd9390605a4c1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-11-05 (Wed, 05 Nov 2025)

  Changed paths:
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_protocol_dev/us_protocol_dev_gui.cpp
    M programs/us_protocol_dev/us_protocol_dev_gui.h

  Log Message:
  -----------
  [12a]Prot_DEV -- [run names for sunsequent PDs] Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....


  Commit: 07982e368feea4dc848c21cf3ef6300332da9eb9
      https://github.com/ehb54/ultrascan3/commit/07982e368feea4dc848c21cf3ef6300332da9eb9
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-11-05 (Wed, 05 Nov 2025)

  Changed paths:
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  [13a]Prot_DEV -- [run names for sunsequent PDs] Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....


  Commit: c8df9d077992267f115dc3a8c6d6c57928fcb568
      https://github.com/ehb54/ultrascan3/commit/c8df9d077992267f115dc3a8c6d6c57928fcb568
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-11-06 (Thu, 06 Nov 2025)

  Changed paths:
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_protocol_dev/us_protocol_dev_gui.cpp

  Log Message:
  -----------
  [15a]Prot_DEV -- [run names for sunsequent PDs] Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....


  Commit: c1590729931d88a83cc57cdd346ccb2ee12835b4
      https://github.com/ehb54/ultrascan3/commit/c1590729931d88a83cc57cdd346ccb2ee12835b4
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-11-06 (Thu, 06 Nov 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [16a]Prot_DEV -- [run names for sunsequent PDs] Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....


  Commit: 7684ca675c735b07511e83617000346fe1a4731c
      https://github.com/ehb54/ultrascan3/commit/7684ca675c735b07511e83617000346fe1a4731c
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-11-08 (Sat, 08 Nov 2025)

  Changed paths:
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  [17a]Prot_DEV -- [run names for sunsequent PDs] Prep. steps for dealing with dataDisk vs. Instrument sources of data to reuse in Prot Dev; some fixes for Vel. vs. ABDE types....


  Commit: 6c646f633296c0b2cdf20178c282494f364c1846
      https://github.com/ehb54/ultrascan3/commit/6c646f633296c0b2cdf20178c282494f364c1846
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-11-18 (Tue, 18 Nov 2025)

  Changed paths:
    M .gitignore
    A .gitmodules
    M CMakeLists.txt
    A CMakePresets.json
    A admin/cmake/GenerateVersion.cmake
    A admin/cmake/Us3QrcCheck.cmake
    A admin/cmake/Us3Resources.cmake
    A admin/cmake/UsDefinesParser.cmake
    A admin/cmake/platform-config.cmake
    A admin/cmake/triplets/x64-osx-dynamic.cmake
    R admin/cmake/us_version.h.in
    M admin/test/docker/Dockerfile
    M alpha/us.cpp
    A buildsys/vcpkg/overlay-ports/qwt/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qwt/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qwtplot3d/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qwtplot3d/qwtplot3d-config.cmake.in
    A buildsys/vcpkg/overlay-ports/qwtplot3d/vcpkg.json
    A doc/manual/CMakeLists.txt
    M gui/CMakeLists.txt
    M gui/libus_gui.pro
    M gui/us_analysis_base2.cpp
    M gui/us_analyte_gui.cpp
    M gui/us_buffer_gui.cpp
    M gui/us_combined_plots_parms_gui.cpp
    M gui/us_edit_spectrum.cpp
    M gui/us_extinctfitter_gui.cpp
    M gui/us_extinction_gui.cpp
    M gui/us_gui_settings.cpp
    M gui/us_gui_settings.h
    M gui/us_gui_util.cpp
    R gui/us_mac_utils.c
    R gui/us_mac_utils.h
    M gui/us_new_spectrum.cpp
    M gui/us_plot.cpp
    M gui/us_plot.h
    M gui/us_plot3d.cpp
    M gui/us_report_general_gui.cpp
    M gui/us_report_gui.cpp
    M gui/us_run_details2.cpp
    M gui/us_sassoc.cpp
    M gui/us_scan_excl_gui.cpp
    M gui/us_sim_params_gui.cpp
    M gui/us_solution_gui.cpp
    M gui/us_spectrodata.cpp
    M gui/us_spectrodata.h
    M gui/us_tmst_plot.cpp
    M gui/us_widgets.cpp
    M gui/us_widgets_dialog.cpp
    R gui/us_win_utils.c
    R gui/us_win_utils.h
    R gui/us_window_message.cpp
    R gui/us_window_message.h
    R gui/us_x11_utils.c
    R gui/us_x11_utils.h
    M programs/CMakeLists.txt
    A programs/us/CMakeLists.txt
    M programs/us/revision.sh
    M programs/us/us.cpp
    M programs/us/us.pro
    M programs/us/us_win_data.cpp
    A programs/us/us_win_data.h
    A programs/us_2dplot/CMakeLists.txt
    M programs/us_2dplot/us_2dplot.cpp
    M programs/us_2dplot/us_2dplot.h
    A programs/us_2dsa/CMakeLists.txt
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_2dsa/us_analysis_control_2d.cpp
    M programs/us_2dsa/us_resplot_2d.cpp
    M programs/us_2dsa/us_show_norm.cpp
    A programs/us_abde/CMakeLists.txt
    M programs/us_abde/us_norm_profile.cpp
    A programs/us_analysis_profile/CMakeLists.txt
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_anapro_utils.cpp
    A programs/us_analyte/CMakeLists.txt
    A programs/us_assign_reviewers_gmp/CMakeLists.txt
    A programs/us_astfem_sim/CMakeLists.txt
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_astfem_sim/us_clipdata.h
    A programs/us_audit_trail_gmp/CMakeLists.txt
    M programs/us_autoflow_analysis/CMakeLists.txt
    A programs/us_buffer/CMakeLists.txt
    A programs/us_buoyancy/CMakeLists.txt
    M programs/us_buoyancy/us_buoyancy.cpp
    A programs/us_colorgradient/CMakeLists.txt
    M programs/us_com_project/CMakeLists.txt
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project_academic/CMakeLists.txt
    A programs/us_combine_models/CMakeLists.txt
    A programs/us_config/CMakeLists.txt
    M programs/us_config/us_color.cpp
    A programs/us_convert/CMakeLists.txt
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_convert/us_intensity.cpp
    A programs/us_dcdt/CMakeLists.txt
    M programs/us_dcdt/us_dcdt.cpp
    A programs/us_ddist_combine/CMakeLists.txt
    M programs/us_ddist_combine/us_ddist_combine.cpp
    A programs/us_density_match/CMakeLists.txt
    A programs/us_dmga_init/CMakeLists.txt
    A programs/us_edit/CMakeLists.txt
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit_scan.cpp
    M programs/us_edit/us_ri_noise.cpp
    A programs/us_equiltime/CMakeLists.txt
    M programs/us_equiltime/us_equiltime.cpp
    A programs/us_esigner_gmp/CMakeLists.txt
    M programs/us_experiment/CMakeLists.txt
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    A programs/us_export_legacy/CMakeLists.txt
    M programs/us_export_legacy/us_export.cpp
    A programs/us_extinction/CMakeLists.txt
    A programs/us_fds_filemanager/CMakeLists.txt
    M programs/us_fds_filemanager/us_fds_filemanager.cpp
    M programs/us_fematch/CMakeLists.txt
    M programs/us_fematch/us_adv_dmgamc.cpp
    M programs/us_fematch/us_fematch.cpp
    M programs/us_fematch/us_resplot_fem.cpp
    M programs/us_fit_meniscus/CMakeLists.txt
    M programs/us_fit_meniscus/us_fit_meniscus.cpp
    A programs/us_ga_init/CMakeLists.txt
    M programs/us_ga_init/us_ga_init.cpp
    A programs/us_globalequil/CMakeLists.txt
    M programs/us_globalequil/us_eqfit_control.cpp
    M programs/us_globalequil/us_eqhistogram.cpp
    M programs/us_globalequil/us_globalequil.cpp
    A programs/us_grid_editor/CMakeLists.txt
    A programs/us_helpdaemon/CMakeLists.txt
    A programs/us_integral/CMakeLists.txt
    A programs/us_investigator/CMakeLists.txt
    A programs/us_legacy_converter/CMakeLists.txt
    A programs/us_license/CMakeLists.txt
    A programs/us_manage_data/CMakeLists.txt
    A programs/us_model_gui/CMakeLists.txt
    A programs/us_modelmetrics/CMakeLists.txt
    M programs/us_modelmetrics/us_modelmetrics.cpp
    A programs/us_mpi_analysis/CMakeLists.txt
    M programs/us_mwl_species_fit/CMakeLists.txt
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    A programs/us_mwl_species_sim/CMakeLists.txt
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    A programs/us_mwl_spectra/CMakeLists.txt
    M programs/us_mwl_spectra/us_mwl_spectra.cpp
    A programs/us_mwlr_viewer/CMakeLists.txt
    M programs/us_mwlr_viewer/us_mwlr_viewer.cpp
    A programs/us_pcsa/CMakeLists.txt
    M programs/us_pcsa/us_mlplot.cpp
    M programs/us_pcsa/us_pcsa.cpp
    M programs/us_pcsa/us_resplot_pc.cpp
    M programs/us_pcsa/us_rpscan.cpp
    A programs/us_predict1/CMakeLists.txt
    A programs/us_predict2/CMakeLists.txt
    A programs/us_project/CMakeLists.txt
    M programs/us_protocol_dev/us_protocol_dev_gui.cpp
    A programs/us_pseudo3d_combine/CMakeLists.txt
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    A programs/us_pseudo_absorbance/CMakeLists.txt
    M programs/us_query_rmsd/CMakeLists.txt
    A programs/us_ramp/CMakeLists.txt
    M programs/us_ramp/us_intensity_ra.cpp
    M programs/us_ramp/us_ramp_gui.cpp
    R programs/us_rasmol_control/us_rasmol_control.cpp
    R programs/us_rasmol_control/us_rasmol_control.h
    R programs/us_rasmol_control/us_rasmol_control.pro
    A programs/us_reassign_reviewers_gmp/CMakeLists.txt
    A programs/us_reporter/CMakeLists.txt
    M programs/us_reporter_gmp/CMakeLists.txt
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    A programs/us_rotor/CMakeLists.txt
    A programs/us_rotor_calibration/CMakeLists.txt
    M programs/us_rotor_calibration/us_rotor_calibration.cpp
    A programs/us_sassoc/CMakeLists.txt
    A programs/us_second_moment/CMakeLists.txt
    M programs/us_second_moment/us_second_moment.cpp
    A programs/us_solution/CMakeLists.txt
    A programs/us_spectrum/CMakeLists.txt
    M programs/us_spectrum/us_spectrum.cpp
    A programs/us_tmst_viewer/CMakeLists.txt
    A programs/us_vhw_combine/CMakeLists.txt
    M programs/us_vhw_combine/us_vhw_combine.cpp
    A programs/us_vhw_enhanced/CMakeLists.txt
    M programs/us_vhw_enhanced/us_distrib_plot.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
    A programs/us_xpn_viewer/CMakeLists.txt
    M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
    M qwtplot3d/CMakeLists.txt
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.sh
    M test-docker.sh
    M test/CMakeLists.txt
    M test/utils/CMakeLists.txt
    M test/utils/test_us_ana_profile.cpp
    M utils/CMakeLists.txt
    M utils/us_defines.h
    M utils/us_run_protocol.h
    A vcpkg
    A vcpkg-configuration.json
    A vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue608


  Commit: 0ebfc3ee220014a56edc62db5dfdb61cdf14cc37
      https://github.com/ehb54/ultrascan3/commit/0ebfc3ee220014a56edc62db5dfdb61cdf14cc37
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-11-18 (Tue, 18 Nov 2025)

  Changed paths:
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  GMP-PROT.DEV -- extend the case of re-processing dataDisk runs for arbitrary channels chases...


  Commit: 71e029d4b0191c6f9e49f61052bb4994b733a90e
      https://github.com/ehb54/ultrascan3/commit/71e029d4b0191c6f9e49f61052bb4994b733a90e
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-11-18 (Tue, 18 Nov 2025)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp

  Log Message:
  -----------
  [1]GMP-PROT.DEV -- extend the case of re-processing dataDisk runs for arbitrary channels chases...


  Commit: f49d8cf364400df6d8104e5fd915d79df22d8638
      https://github.com/ehb54/ultrascan3/commit/f49d8cf364400df6d8104e5fd915d79df22d8638
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-11-18 (Tue, 18 Nov 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [2]GMP-PROT.DEV -- extend the case of re-processing dataDisk runs for arbitrary channels chases...


  Commit: 8f6a939aba51bb5c70c66d760e2242304e659c0f
      https://github.com/ehb54/ultrascan3/commit/8f6a939aba51bb5c70c66d760e2242304e659c0f
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-11-18 (Tue, 18 Nov 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [3]GMP-PROT.DEV -- extend the case of re-processing dataDisk runs for arbitrary channels chases...


  Commit: 6e94734ca883da80e058cf4e51dee4474e9863e5
      https://github.com/ehb54/ultrascan3/commit/6e94734ca883da80e058cf4e51dee4474e9863e5
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-11-19 (Wed, 19 Nov 2025)

  Changed paths:
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_convert/us_convert_gui.h
    M programs/us_edit/us_edit.cpp
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment.pro
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_protocol_dev/us_protocol_dev_gui.cpp
    M programs/us_protocol_dev/us_protocol_dev_gui.h
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  Merge pull request #305 from ehb54/alexey-dev-issue608

Alexey dev issue608: Prot. Dev. for DataDisk data types


  Commit: 5c92b751327dc3f2908415ade46f68cc6ae21f7f
      https://github.com/ehb54/ultrascan3/commit/5c92b751327dc3f2908415ade46f68cc6ae21f7f
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-20 (Thu, 20 Nov 2025)

  Changed paths:
    M gui/libus_gui.pro
    A gui/us_convert_gui.cpp
    A gui/us_convert_gui.h
    A gui/us_experiment_gui.cpp
    A gui/us_experiment_gui.h
    A gui/us_get_run.cpp
    A gui/us_get_run.h
    A gui/us_intensity.cpp
    A gui/us_intensity.h
    A gui/us_select_triples.cpp
    A gui/us_select_triples.h
    A gui/us_selectbox.cpp
    A gui/us_selectbox.h
    M programs/us_autoflow_analysis/CMakeLists.txt
    M programs/us_autoflow_analysis/us_autoflow_analysis.h
    M programs/us_autoflow_analysis/us_autoflow_analysis.pro
    M programs/us_com_project/CMakeLists.txt
    M programs/us_com_project/us_com_project.pro
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_com_project_academic/CMakeLists.txt
    M programs/us_com_project_academic/us_com_project_academic.pro
    M programs/us_convert/CMakeLists.txt
    R programs/us_convert/us_convert.cpp
    R programs/us_convert/us_convert.h
    M programs/us_convert/us_convert.pro
    R programs/us_convert/us_convert_gui.cpp
    R programs/us_convert/us_convert_gui.h
    R programs/us_convert/us_convertio.cpp
    R programs/us_convert/us_convertio.h
    R programs/us_convert/us_experiment.cpp
    R programs/us_convert/us_experiment.h
    R programs/us_convert/us_experiment_gui.cpp
    R programs/us_convert/us_experiment_gui.h
    R programs/us_convert/us_get_run.cpp
    R programs/us_convert/us_get_run.h
    R programs/us_convert/us_intensity.cpp
    R programs/us_convert/us_intensity.h
    R programs/us_convert/us_select_triples.cpp
    R programs/us_convert/us_select_triples.h
    R programs/us_convert/us_selectbox.cpp
    R programs/us_convert/us_selectbox.h
    M programs/us_experiment/CMakeLists.txt
    M programs/us_experiment/us_experiment.pro
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_fematch/CMakeLists.txt
    M programs/us_fematch/us_fematch.pro
    M programs/us_legacy_converter/CMakeLists.txt
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_legacy_converter/us_legacy_converter.pro
    M programs/us_protocol_dev/CMakeLists.txt
    M programs/us_protocol_dev/us_protocol_dev.pro
    M programs/us_protocol_dev/us_protocol_dev_gui.h
    M programs/us_query_rmsd/CMakeLists.txt
    M programs/us_query_rmsd/us_query_rmsd.pro
    M programs/us_reporter_gmp/CMakeLists.txt
    M programs/us_reporter_gmp/us_reporter_gmp.pro
    M programs/us_xpn_viewer/us_xpn_viewer.pro
    M utils/CMakeLists.txt
    M utils/libus_utils.pro
    A utils/us_convert.cpp
    A utils/us_convert.h
    A utils/us_convertio.cpp
    A utils/us_convertio.h
    A utils/us_experiment.cpp
    A utils/us_experiment.h

  Log Message:
  -----------
  Move general code used by multiple programs to libraries. Update CMakeLists.txt and *.pro files accordingly


  Commit: 22b358bc7c50111c979137831392022b5920ece3
      https://github.com/ehb54/ultrascan3/commit/22b358bc7c50111c979137831392022b5920ece3
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-20 (Thu, 20 Nov 2025)

  Changed paths:
    M test-docker.sh

  Log Message:
  -----------
  - Add `US3_BUILD_PROGRAMS` flag to disable program builds in docker tests
- Redirect build output to `tee build.log` for better log visibility
- Ensure consistent newline at end of script


  Commit: eed16179a8828fcdad33d10893011f872744078a
      https://github.com/ehb54/ultrascan3/commit/eed16179a8828fcdad33d10893011f872744078a
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-20 (Thu, 20 Nov 2025)

  Changed paths:
    M CMakeLists.txt
    M programs/us_fit_meniscus/CMakeLists.txt
    M utils/CMakeLists.txt

  Log Message:
  -----------
  - Fix variable mismatches in `BUILD_TESTING` conditions across CMakeLists.
- Disable `US3_BUILD_PROGRAMS` in `TEST` profile to align with expected behavior.
- Update logging for `BUILD_TESTING` status in CMake output.
- Remove redundant `US3_BUILD_TESTS` conditions for cleaner logic.


  Commit: 342c572ec5c13739d56e6a45922eeddd2168d777
      https://github.com/ehb54/ultrascan3/commit/342c572ec5c13739d56e6a45922eeddd2168d777
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-20 (Thu, 20 Nov 2025)

  Changed paths:
    M gui/us_convert_gui.cpp
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M test-docker.sh

  Log Message:
  -----------
  Fix typos


  Commit: 8ec56186a4b601669d87ed939d3ac1f4e7057561
      https://github.com/ehb54/ultrascan3/commit/8ec56186a4b601669d87ed939d3ac1f4e7057561
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-20 (Thu, 20 Nov 2025)

  Changed paths:
    M utils/us_convert.cpp
    M utils/us_convert.h

  Log Message:
  -----------
  - Apply `const QString&` to parameters in `readLegacyData` for efficiency
- Remove unused `mixed_type` variable and redundant assignment of `runType`
- Clean up debug statements for clearer logging


  Commit: 1e81209448574c4a6b3bf57955a2aed48a70cca2
      https://github.com/ehb54/ultrascan3/commit/1e81209448574c4a6b3bf57955a2aed48a70cca2
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-11-20 (Thu, 20 Nov 2025)

  Changed paths:
    M CMakeLists.txt
    M gui/libus_gui.pro
    A gui/us_convert_gui.cpp
    A gui/us_convert_gui.h
    A gui/us_experiment_gui.cpp
    A gui/us_experiment_gui.h
    A gui/us_get_run.cpp
    A gui/us_get_run.h
    A gui/us_intensity.cpp
    A gui/us_intensity.h
    A gui/us_select_triples.cpp
    A gui/us_select_triples.h
    A gui/us_selectbox.cpp
    A gui/us_selectbox.h
    M programs/us_autoflow_analysis/CMakeLists.txt
    M programs/us_autoflow_analysis/us_autoflow_analysis.h
    M programs/us_autoflow_analysis/us_autoflow_analysis.pro
    M programs/us_com_project/CMakeLists.txt
    M programs/us_com_project/us_com_project.pro
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_com_project_academic/CMakeLists.txt
    M programs/us_com_project_academic/us_com_project_academic.pro
    M programs/us_convert/CMakeLists.txt
    R programs/us_convert/us_convert.cpp
    R programs/us_convert/us_convert.h
    M programs/us_convert/us_convert.pro
    R programs/us_convert/us_convert_gui.cpp
    R programs/us_convert/us_convert_gui.h
    R programs/us_convert/us_convertio.cpp
    R programs/us_convert/us_convertio.h
    R programs/us_convert/us_experiment.cpp
    R programs/us_convert/us_experiment.h
    R programs/us_convert/us_experiment_gui.cpp
    R programs/us_convert/us_experiment_gui.h
    R programs/us_convert/us_get_run.cpp
    R programs/us_convert/us_get_run.h
    R programs/us_convert/us_intensity.cpp
    R programs/us_convert/us_intensity.h
    R programs/us_convert/us_select_triples.cpp
    R programs/us_convert/us_select_triples.h
    R programs/us_convert/us_selectbox.cpp
    R programs/us_convert/us_selectbox.h
    M programs/us_experiment/CMakeLists.txt
    M programs/us_experiment/us_experiment.pro
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_fematch/CMakeLists.txt
    M programs/us_fematch/us_fematch.pro
    M programs/us_fit_meniscus/CMakeLists.txt
    M programs/us_legacy_converter/CMakeLists.txt
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_legacy_converter/us_legacy_converter.pro
    M programs/us_protocol_dev/CMakeLists.txt
    M programs/us_protocol_dev/us_protocol_dev.pro
    M programs/us_protocol_dev/us_protocol_dev_gui.h
    M programs/us_query_rmsd/CMakeLists.txt
    M programs/us_query_rmsd/us_query_rmsd.pro
    M programs/us_reporter_gmp/CMakeLists.txt
    M programs/us_reporter_gmp/us_reporter_gmp.pro
    M programs/us_xpn_viewer/us_xpn_viewer.pro
    M test-docker.sh
    M utils/CMakeLists.txt
    M utils/libus_utils.pro
    A utils/us_convert.cpp
    A utils/us_convert.h
    A utils/us_convertio.cpp
    A utils/us_convertio.h
    A utils/us_experiment.cpp
    A utils/us_experiment.h

  Log Message:
  -----------
  Merge pull request #323 from ehb54/lukas/cmake-fixes

Fix failing Unittests and cmake build


  Commit: 9317a33dcf14a74c7ca9e145158c539dc3c10be3
      https://github.com/ehb54/ultrascan3/commit/9317a33dcf14a74c7ca9e145158c539dc3c10be3
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-11-20 (Thu, 20 Nov 2025)

  Changed paths:
    M CMakeLists.txt
    M gui/libus_gui.pro
    A gui/us_convert_gui.cpp
    A gui/us_convert_gui.h
    A gui/us_experiment_gui.cpp
    A gui/us_experiment_gui.h
    A gui/us_get_run.cpp
    A gui/us_get_run.h
    A gui/us_intensity.cpp
    A gui/us_intensity.h
    A gui/us_select_triples.cpp
    A gui/us_select_triples.h
    A gui/us_selectbox.cpp
    A gui/us_selectbox.h
    M programs/us_autoflow_analysis/CMakeLists.txt
    M programs/us_autoflow_analysis/us_autoflow_analysis.h
    M programs/us_autoflow_analysis/us_autoflow_analysis.pro
    M programs/us_com_project/CMakeLists.txt
    M programs/us_com_project/us_com_project.pro
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_com_project_academic/CMakeLists.txt
    M programs/us_com_project_academic/us_com_project_academic.pro
    M programs/us_convert/CMakeLists.txt
    R programs/us_convert/us_convert.cpp
    R programs/us_convert/us_convert.h
    M programs/us_convert/us_convert.pro
    R programs/us_convert/us_convert_gui.cpp
    R programs/us_convert/us_convert_gui.h
    R programs/us_convert/us_convertio.cpp
    R programs/us_convert/us_convertio.h
    R programs/us_convert/us_experiment.cpp
    R programs/us_convert/us_experiment.h
    R programs/us_convert/us_experiment_gui.cpp
    R programs/us_convert/us_experiment_gui.h
    R programs/us_convert/us_get_run.cpp
    R programs/us_convert/us_get_run.h
    R programs/us_convert/us_intensity.cpp
    R programs/us_convert/us_intensity.h
    R programs/us_convert/us_select_triples.cpp
    R programs/us_convert/us_select_triples.h
    R programs/us_convert/us_selectbox.cpp
    R programs/us_convert/us_selectbox.h
    M programs/us_edit/us_edit.cpp
    M programs/us_experiment/CMakeLists.txt
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment.pro
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_fematch/CMakeLists.txt
    M programs/us_fematch/us_fematch.pro
    M programs/us_fit_meniscus/CMakeLists.txt
    M programs/us_legacy_converter/CMakeLists.txt
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_legacy_converter/us_legacy_converter.pro
    M programs/us_protocol_dev/CMakeLists.txt
    M programs/us_protocol_dev/us_protocol_dev.pro
    M programs/us_protocol_dev/us_protocol_dev_gui.cpp
    M programs/us_protocol_dev/us_protocol_dev_gui.h
    M programs/us_query_rmsd/CMakeLists.txt
    M programs/us_query_rmsd/us_query_rmsd.pro
    M programs/us_reporter_gmp/CMakeLists.txt
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.pro
    M programs/us_xpn_viewer/us_xpn_viewer.pro
    M test-docker.sh
    M utils/CMakeLists.txt
    M utils/libus_utils.pro
    A utils/us_convert.cpp
    A utils/us_convert.h
    A utils/us_convertio.cpp
    A utils/us_convertio.h
    A utils/us_experiment.cpp
    A utils/us_experiment.h

  Log Message:
  -----------
  Merge pull request #325 from ehb54/main

Include main into alexey-dev-issue651


Compare: https://github.com/ehb54/ultrascan3/compare/a81ad04f934c...9317a33dcf14

To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications


More information about the us-commits mailing list