[us-commits] [ehb54/ultrascan3] 5c92b7: Move general code used by multiple programs to lib...

[ehb54]

  Branch: refs/heads/ehb54-test-commit
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 5c92b751327dc3f2908415ade46f68cc6ae21f7f
      https://github.com/ehb54/ultrascan3/commit/5c92b751327dc3f2908415ade46f68cc6ae21f7f
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-20 (Thu, 20 Nov 2025)

  Changed paths:
    M gui/libus_gui.pro
    A gui/us_convert_gui.cpp
    A gui/us_convert_gui.h
    A gui/us_experiment_gui.cpp
    A gui/us_experiment_gui.h
    A gui/us_get_run.cpp
    A gui/us_get_run.h
    A gui/us_intensity.cpp
    A gui/us_intensity.h
    A gui/us_select_triples.cpp
    A gui/us_select_triples.h
    A gui/us_selectbox.cpp
    A gui/us_selectbox.h
    M programs/us_autoflow_analysis/CMakeLists.txt
    M programs/us_autoflow_analysis/us_autoflow_analysis.h
    M programs/us_autoflow_analysis/us_autoflow_analysis.pro
    M programs/us_com_project/CMakeLists.txt
    M programs/us_com_project/us_com_project.pro
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_com_project_academic/CMakeLists.txt
    M programs/us_com_project_academic/us_com_project_academic.pro
    M programs/us_convert/CMakeLists.txt
    R programs/us_convert/us_convert.cpp
    R programs/us_convert/us_convert.h
    M programs/us_convert/us_convert.pro
    R programs/us_convert/us_convert_gui.cpp
    R programs/us_convert/us_convert_gui.h
    R programs/us_convert/us_convertio.cpp
    R programs/us_convert/us_convertio.h
    R programs/us_convert/us_experiment.cpp
    R programs/us_convert/us_experiment.h
    R programs/us_convert/us_experiment_gui.cpp
    R programs/us_convert/us_experiment_gui.h
    R programs/us_convert/us_get_run.cpp
    R programs/us_convert/us_get_run.h
    R programs/us_convert/us_intensity.cpp
    R programs/us_convert/us_intensity.h
    R programs/us_convert/us_select_triples.cpp
    R programs/us_convert/us_select_triples.h
    R programs/us_convert/us_selectbox.cpp
    R programs/us_convert/us_selectbox.h
    M programs/us_experiment/CMakeLists.txt
    M programs/us_experiment/us_experiment.pro
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_fematch/CMakeLists.txt
    M programs/us_fematch/us_fematch.pro
    M programs/us_legacy_converter/CMakeLists.txt
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_legacy_converter/us_legacy_converter.pro
    M programs/us_protocol_dev/CMakeLists.txt
    M programs/us_protocol_dev/us_protocol_dev.pro
    M programs/us_protocol_dev/us_protocol_dev_gui.h
    M programs/us_query_rmsd/CMakeLists.txt
    M programs/us_query_rmsd/us_query_rmsd.pro
    M programs/us_reporter_gmp/CMakeLists.txt
    M programs/us_reporter_gmp/us_reporter_gmp.pro
    M programs/us_xpn_viewer/us_xpn_viewer.pro
    M utils/CMakeLists.txt
    M utils/libus_utils.pro
    A utils/us_convert.cpp
    A utils/us_convert.h
    A utils/us_convertio.cpp
    A utils/us_convertio.h
    A utils/us_experiment.cpp
    A utils/us_experiment.h

  Log Message:
  -----------
  Move general code used by multiple programs to libraries. Update CMakeLists.txt and *.pro files accordingly


  Commit: 22b358bc7c50111c979137831392022b5920ece3
      https://github.com/ehb54/ultrascan3/commit/22b358bc7c50111c979137831392022b5920ece3
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-20 (Thu, 20 Nov 2025)

  Changed paths:
    M test-docker.sh

  Log Message:
  -----------
  - Add `US3_BUILD_PROGRAMS` flag to disable program builds in docker tests
- Redirect build output to `tee build.log` for better log visibility
- Ensure consistent newline at end of script


  Commit: eed16179a8828fcdad33d10893011f872744078a
      https://github.com/ehb54/ultrascan3/commit/eed16179a8828fcdad33d10893011f872744078a
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-20 (Thu, 20 Nov 2025)

  Changed paths:
    M CMakeLists.txt
    M programs/us_fit_meniscus/CMakeLists.txt
    M utils/CMakeLists.txt

  Log Message:
  -----------
  - Fix variable mismatches in `BUILD_TESTING` conditions across CMakeLists.
- Disable `US3_BUILD_PROGRAMS` in `TEST` profile to align with expected behavior.
- Update logging for `BUILD_TESTING` status in CMake output.
- Remove redundant `US3_BUILD_TESTS` conditions for cleaner logic.


  Commit: 342c572ec5c13739d56e6a45922eeddd2168d777
      https://github.com/ehb54/ultrascan3/commit/342c572ec5c13739d56e6a45922eeddd2168d777
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-20 (Thu, 20 Nov 2025)

  Changed paths:
    M gui/us_convert_gui.cpp
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M test-docker.sh

  Log Message:
  -----------
  Fix typos


  Commit: 8ec56186a4b601669d87ed939d3ac1f4e7057561
      https://github.com/ehb54/ultrascan3/commit/8ec56186a4b601669d87ed939d3ac1f4e7057561
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-20 (Thu, 20 Nov 2025)

  Changed paths:
    M utils/us_convert.cpp
    M utils/us_convert.h

  Log Message:
  -----------
  - Apply `const QString&` to parameters in `readLegacyData` for efficiency
- Remove unused `mixed_type` variable and redundant assignment of `runType`
- Clean up debug statements for clearer logging


  Commit: 1e81209448574c4a6b3bf57955a2aed48a70cca2
      https://github.com/ehb54/ultrascan3/commit/1e81209448574c4a6b3bf57955a2aed48a70cca2
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-11-20 (Thu, 20 Nov 2025)

  Changed paths:
    M CMakeLists.txt
    M gui/libus_gui.pro
    A gui/us_convert_gui.cpp
    A gui/us_convert_gui.h
    A gui/us_experiment_gui.cpp
    A gui/us_experiment_gui.h
    A gui/us_get_run.cpp
    A gui/us_get_run.h
    A gui/us_intensity.cpp
    A gui/us_intensity.h
    A gui/us_select_triples.cpp
    A gui/us_select_triples.h
    A gui/us_selectbox.cpp
    A gui/us_selectbox.h
    M programs/us_autoflow_analysis/CMakeLists.txt
    M programs/us_autoflow_analysis/us_autoflow_analysis.h
    M programs/us_autoflow_analysis/us_autoflow_analysis.pro
    M programs/us_com_project/CMakeLists.txt
    M programs/us_com_project/us_com_project.pro
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_com_project_academic/CMakeLists.txt
    M programs/us_com_project_academic/us_com_project_academic.pro
    M programs/us_convert/CMakeLists.txt
    R programs/us_convert/us_convert.cpp
    R programs/us_convert/us_convert.h
    M programs/us_convert/us_convert.pro
    R programs/us_convert/us_convert_gui.cpp
    R programs/us_convert/us_convert_gui.h
    R programs/us_convert/us_convertio.cpp
    R programs/us_convert/us_convertio.h
    R programs/us_convert/us_experiment.cpp
    R programs/us_convert/us_experiment.h
    R programs/us_convert/us_experiment_gui.cpp
    R programs/us_convert/us_experiment_gui.h
    R programs/us_convert/us_get_run.cpp
    R programs/us_convert/us_get_run.h
    R programs/us_convert/us_intensity.cpp
    R programs/us_convert/us_intensity.h
    R programs/us_convert/us_select_triples.cpp
    R programs/us_convert/us_select_triples.h
    R programs/us_convert/us_selectbox.cpp
    R programs/us_convert/us_selectbox.h
    M programs/us_experiment/CMakeLists.txt
    M programs/us_experiment/us_experiment.pro
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_fematch/CMakeLists.txt
    M programs/us_fematch/us_fematch.pro
    M programs/us_fit_meniscus/CMakeLists.txt
    M programs/us_legacy_converter/CMakeLists.txt
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_legacy_converter/us_legacy_converter.pro
    M programs/us_protocol_dev/CMakeLists.txt
    M programs/us_protocol_dev/us_protocol_dev.pro
    M programs/us_protocol_dev/us_protocol_dev_gui.h
    M programs/us_query_rmsd/CMakeLists.txt
    M programs/us_query_rmsd/us_query_rmsd.pro
    M programs/us_reporter_gmp/CMakeLists.txt
    M programs/us_reporter_gmp/us_reporter_gmp.pro
    M programs/us_xpn_viewer/us_xpn_viewer.pro
    M test-docker.sh
    M utils/CMakeLists.txt
    M utils/libus_utils.pro
    A utils/us_convert.cpp
    A utils/us_convert.h
    A utils/us_convertio.cpp
    A utils/us_convertio.h
    A utils/us_experiment.cpp
    A utils/us_experiment.h

  Log Message:
  -----------
  Merge pull request #323 from ehb54/lukas/cmake-fixes

Fix failing Unittests and cmake build


  Commit: 1266be2b9bea8dfeef9b35c56fee9c2bf78d423b
      https://github.com/ehb54/ultrascan3/commit/1266be2b9bea8dfeef9b35c56fee9c2bf78d423b
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-11-21 (Fri, 21 Nov 2025)

  Changed paths:
    M CMakeLists.txt
    M gui/libus_gui.pro
    A gui/us_convert_gui.cpp
    A gui/us_convert_gui.h
    A gui/us_experiment_gui.cpp
    A gui/us_experiment_gui.h
    A gui/us_get_run.cpp
    A gui/us_get_run.h
    A gui/us_intensity.cpp
    A gui/us_intensity.h
    A gui/us_select_triples.cpp
    A gui/us_select_triples.h
    A gui/us_selectbox.cpp
    A gui/us_selectbox.h
    M programs/us_autoflow_analysis/CMakeLists.txt
    M programs/us_autoflow_analysis/us_autoflow_analysis.h
    M programs/us_autoflow_analysis/us_autoflow_analysis.pro
    M programs/us_com_project/CMakeLists.txt
    M programs/us_com_project/us_com_project.pro
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_com_project_academic/CMakeLists.txt
    M programs/us_com_project_academic/us_com_project_academic.pro
    M programs/us_convert/CMakeLists.txt
    R programs/us_convert/us_convert.cpp
    R programs/us_convert/us_convert.h
    M programs/us_convert/us_convert.pro
    R programs/us_convert/us_convert_gui.cpp
    R programs/us_convert/us_convert_gui.h
    R programs/us_convert/us_convertio.cpp
    R programs/us_convert/us_convertio.h
    R programs/us_convert/us_experiment.cpp
    R programs/us_convert/us_experiment.h
    R programs/us_convert/us_experiment_gui.cpp
    R programs/us_convert/us_experiment_gui.h
    R programs/us_convert/us_get_run.cpp
    R programs/us_convert/us_get_run.h
    R programs/us_convert/us_intensity.cpp
    R programs/us_convert/us_intensity.h
    R programs/us_convert/us_select_triples.cpp
    R programs/us_convert/us_select_triples.h
    R programs/us_convert/us_selectbox.cpp
    R programs/us_convert/us_selectbox.h
    M programs/us_experiment/CMakeLists.txt
    M programs/us_experiment/us_experiment.pro
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_fematch/CMakeLists.txt
    M programs/us_fematch/us_fematch.pro
    M programs/us_fit_meniscus/CMakeLists.txt
    M programs/us_legacy_converter/CMakeLists.txt
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_legacy_converter/us_legacy_converter.pro
    M programs/us_protocol_dev/CMakeLists.txt
    M programs/us_protocol_dev/us_protocol_dev.pro
    M programs/us_protocol_dev/us_protocol_dev_gui.h
    M programs/us_query_rmsd/CMakeLists.txt
    M programs/us_query_rmsd/us_query_rmsd.pro
    M programs/us_reporter_gmp/CMakeLists.txt
    M programs/us_reporter_gmp/us_reporter_gmp.pro
    M programs/us_xpn_viewer/us_xpn_viewer.pro
    M test-docker.sh
    M utils/CMakeLists.txt
    M utils/libus_utils.pro
    A utils/us_convert.cpp
    A utils/us_convert.h
    A utils/us_convertio.cpp
    A utils/us_convertio.h
    A utils/us_experiment.cpp
    A utils/us_experiment.h

  Log Message:
  -----------
  Merge branch 'main' into ehb54-test-commit


Compare: https://github.com/ehb54/ultrascan3/compare/ebd0fea4759a...1266be2b9bea

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