[us-commits] [ehb54/ultrascan3] 31bffc: Update unit-tests.yml to include additional paths

ehb54 noreply at github.com
Mon Nov 24 12:52:11 MST 2025 

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 31bffce6f2258893d277cf9e2ab6b5a2290acd70
      https://github.com/ehb54/ultrascan3/commit/31bffce6f2258893d277cf9e2ab6b5a2290acd70
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-17 (Mon, 17 Nov 2025)

  Changed paths:
    M .github/workflows/unit-tests.yml

  Log Message:
  -----------
  Update unit-tests.yml to include additional paths


  Commit: 8f345295dc5803000521a47ad53aa246df51eff7
      https://github.com/ehb54/ultrascan3/commit/8f345295dc5803000521a47ad53aa246df51eff7
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-19 (Wed, 19 Nov 2025)

  Changed paths:
    A .github/workflows/.yamllint.yml
    M .github/workflows/codeql-analysis.yml
    A .github/workflows/doc-build.yml
    M admin/codeql/docker/local.pri.gui
    M admin/codeql/docker/local.pri.mpi
    M admin/codeql/docker/local.pri.somo
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M utils/us_run_protocol.h

  Log Message:
  -----------
  Merge pull request #320 from ehb54/main

update to main


  Commit: 129b8d9184d5cab1189cca7b84574bf7e97dca76
      https://github.com/ehb54/ultrascan3/commit/129b8d9184d5cab1189cca7b84574bf7e97dca76
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-19 (Wed, 19 Nov 2025)

  Changed paths:
    M .github/workflows/codeql-analysis.yml

  Log Message:
  -----------
  Refactor CodeQL workflow for improved caching and builds


  Commit: 793e12c735495da5c5b6deed3355e2428e6c2a16
      https://github.com/ehb54/ultrascan3/commit/793e12c735495da5c5b6deed3355e2428e6c2a16
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-19 (Wed, 19 Nov 2025)

  Changed paths:
    M .github/workflows/codeql-analysis.yml

  Log Message:
  -----------
  Simplify build step in CodeQL analysis workflow

Removed ccache setup and git configuration from the build step.


  Commit: 0f76a4bf8a6ae54cd386ba2a645b0994b3b8b8b5
      https://github.com/ehb54/ultrascan3/commit/0f76a4bf8a6ae54cd386ba2a645b0994b3b8b8b5
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-19 (Wed, 19 Nov 2025)

  Changed paths:
    M .github/workflows/codeql-analysis.yml

  Log Message:
  -----------
  Refactor CodeQL analysis workflow

Refactor CodeQL analysis workflow to improve target calculation and build steps.


  Commit: 6c80777b7287a29fe978526475e6f099ca3ef827
      https://github.com/ehb54/ultrascan3/commit/6c80777b7287a29fe978526475e6f099ca3ef827
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-19 (Wed, 19 Nov 2025)

  Changed paths:
    M .github/workflows/codeql-analysis.yml

  Log Message:
  -----------
  Refactor CodeQL workflow to simplify caching and builds

Removed caching steps for ccache, utils, qwtplot3d, and gui. Added build steps for utils, qwtplot3d, and gui using qmake.


  Commit: 27c760f8c268e77d5038469cfd40243fb274f2d1
      https://github.com/ehb54/ultrascan3/commit/27c760f8c268e77d5038469cfd40243fb274f2d1
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-19 (Wed, 19 Nov 2025)

  Changed paths:
    M .github/workflows/unit-tests.yml

  Log Message:
  -----------
  Update unit-tests.yml to remove path filters for push

Removed specific path filters for push events in unit-tests workflow.


  Commit: 2465409a96b820d237f9bf0c3b09b12f859060d7
      https://github.com/ehb54/ultrascan3/commit/2465409a96b820d237f9bf0c3b09b12f859060d7
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-19 (Wed, 19 Nov 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  Update static analysis workflow trigger paths

Removed specific path triggers for push events in static analysis workflow.


  Commit: c1ac9c0b43cdde1480834d2fb742344b9649144f
      https://github.com/ehb54/ultrascan3/commit/c1ac9c0b43cdde1480834d2fb742344b9649144f
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-19 (Wed, 19 Nov 2025)

  Changed paths:
    R .github/workflows/.yamllint.yml
    A admin/linting/cmake/.cmake-format.yaml
    A admin/linting/cmake/README.md
    A admin/linting/yaml/.yamllint.yml

  Log Message:
  -----------
  Document CMake formatter


  Commit: 391ac4d011a289eafa902e9d56eb4382491f0b66
      https://github.com/ehb54/ultrascan3/commit/391ac4d011a289eafa902e9d56eb4382491f0b66
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-19 (Wed, 19 Nov 2025)

  Changed paths:
    M .github/workflows/codeql-analysis.yml
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  Updating nproc


  Commit: ea7559d6bcd810ed7a176871e33f0d36b49152e2
      https://github.com/ehb54/ultrascan3/commit/ea7559d6bcd810ed7a176871e33f0d36b49152e2
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-19 (Wed, 19 Nov 2025)

  Changed paths:
    M .github/workflows/codeql-analysis.yml
    M .github/workflows/unit-tests.yml
    M admin/linting/cmake/.cmake-format.yaml
    M admin/linting/cmake/README.md

  Log Message:
  -----------
  Fix minor comments


  Commit: 5ff2d239588616635adbdfaf775949a91f5d7565
      https://github.com/ehb54/ultrascan3/commit/5ff2d239588616635adbdfaf775949a91f5d7565
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-19 (Wed, 19 Nov 2025)

  Changed paths:
    M .github/workflows/doc-build.yml
    M .github/workflows/static-analysis.yml
    M .github/workflows/unit-tests.yml

  Log Message:
  -----------
  Update checkout action version


  Commit: 321b58c1347db9be2b3ef6cbb24e94e5e4119dfa
      https://github.com/ehb54/ultrascan3/commit/321b58c1347db9be2b3ef6cbb24e94e5e4119dfa
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-19 (Wed, 19 Nov 2025)

  Changed paths:
    M .github/workflows/doc-build.yml

  Log Message:
  -----------
  fix branches


  Commit: 5cf42202af6d7f5544a2cf1111d44f5f1a232777
      https://github.com/ehb54/ultrascan3/commit/5cf42202af6d7f5544a2cf1111d44f5f1a232777
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-20 (Thu, 20 Nov 2025)

  Changed paths:
    M .github/workflows/codeql-analysis.yml

  Log Message:
  -----------
  Refactor CodeQL analysis workflow conditions

Removed specific file paths from pull request triggers and updated conditions for CodeQL analysis steps.


  Commit: 3f486acaa2a2e5b708f257acf949e90d1b042bbc
      https://github.com/ehb54/ultrascan3/commit/3f486acaa2a2e5b708f257acf949e90d1b042bbc
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-20 (Thu, 20 Nov 2025)

  Changed paths:
    M .github/workflows/codeql-analysis.yml

  Log Message:
  -----------
  Rename analysis job for GUI programs


  Commit: 02ab6c663335530dbf4295161c2f68c1043b3874
      https://github.com/ehb54/ultrascan3/commit/02ab6c663335530dbf4295161c2f68c1043b3874
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-21 (Fri, 21 Nov 2025)

  Changed paths:
    M CMakeLists.txt
    M gui/libus_gui.pro
    A gui/us_convert_gui.cpp
    A gui/us_convert_gui.h
    A gui/us_experiment_gui.cpp
    A gui/us_experiment_gui.h
    A gui/us_get_run.cpp
    A gui/us_get_run.h
    A gui/us_intensity.cpp
    A gui/us_intensity.h
    A gui/us_select_triples.cpp
    A gui/us_select_triples.h
    A gui/us_selectbox.cpp
    A gui/us_selectbox.h
    M programs/us_autoflow_analysis/CMakeLists.txt
    M programs/us_autoflow_analysis/us_autoflow_analysis.h
    M programs/us_autoflow_analysis/us_autoflow_analysis.pro
    M programs/us_com_project/CMakeLists.txt
    M programs/us_com_project/us_com_project.pro
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_com_project_academic/CMakeLists.txt
    M programs/us_com_project_academic/us_com_project_academic.pro
    M programs/us_convert/CMakeLists.txt
    R programs/us_convert/us_convert.cpp
    R programs/us_convert/us_convert.h
    M programs/us_convert/us_convert.pro
    R programs/us_convert/us_convert_gui.cpp
    R programs/us_convert/us_convert_gui.h
    R programs/us_convert/us_convertio.cpp
    R programs/us_convert/us_convertio.h
    R programs/us_convert/us_experiment.cpp
    R programs/us_convert/us_experiment.h
    R programs/us_convert/us_experiment_gui.cpp
    R programs/us_convert/us_experiment_gui.h
    R programs/us_convert/us_get_run.cpp
    R programs/us_convert/us_get_run.h
    R programs/us_convert/us_intensity.cpp
    R programs/us_convert/us_intensity.h
    R programs/us_convert/us_select_triples.cpp
    R programs/us_convert/us_select_triples.h
    R programs/us_convert/us_selectbox.cpp
    R programs/us_convert/us_selectbox.h
    M programs/us_edit/us_edit.cpp
    M programs/us_experiment/CMakeLists.txt
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment.pro
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_fematch/CMakeLists.txt
    M programs/us_fematch/us_fematch.pro
    M programs/us_fit_meniscus/CMakeLists.txt
    M programs/us_legacy_converter/CMakeLists.txt
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_legacy_converter/us_legacy_converter.pro
    M programs/us_protocol_dev/CMakeLists.txt
    M programs/us_protocol_dev/us_protocol_dev.pro
    M programs/us_protocol_dev/us_protocol_dev_gui.cpp
    M programs/us_protocol_dev/us_protocol_dev_gui.h
    M programs/us_query_rmsd/CMakeLists.txt
    M programs/us_query_rmsd/us_query_rmsd.pro
    M programs/us_reporter_gmp/CMakeLists.txt
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.pro
    M programs/us_xpn_viewer/us_xpn_viewer.pro
    M test-docker.sh
    M utils/CMakeLists.txt
    M utils/libus_utils.pro
    A utils/us_convert.cpp
    A utils/us_convert.h
    A utils/us_convertio.cpp
    A utils/us_convertio.h
    A utils/us_experiment.cpp
    A utils/us_experiment.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/gh_actions


  Commit: 013afa9051723a54ff17a3431895f0e6aa65eebc
      https://github.com/ehb54/ultrascan3/commit/013afa9051723a54ff17a3431895f0e6aa65eebc
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-21 (Fri, 21 Nov 2025)

  Changed paths:
    M .github/workflows/codeql-analysis.yml
    M .github/workflows/doc-build.yml
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  Refactor GitHub Actions workflows to enhance modularity and efficiency
- Introduce `changed-files` job to conditionally trigger workflows based on file changes.
- Add status-checking jobs for Documentation, CodeQL analysis, and Static Analysis builds.
- Improve concurrency management and file fetch depth.
- Optimize CI Docker containers and cleanup processes.
- Streamline conditional checks and matrix configurations.


  Commit: 2574c202cf8e3a25d12efaf4dd85cbfcf4cce419
      https://github.com/ehb54/ultrascan3/commit/2574c202cf8e3a25d12efaf4dd85cbfcf4cce419
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-21 (Fri, 21 Nov 2025)

  Changed paths:
    A .github/workflows/unit-tests-v2.yml

  Log Message:
  -----------
  Add `unit-tests-v2.yml` GitHub Actions workflow

- Introduce a new workflow for unit testing with support for configurable test filters and debug mode.
- Add a `changed-files` job to detect relevant file modifications and conditionally trigger tests.
- Implement improved concurrency management and result-checking mechanisms.
- Streamline test setup, build process, and log management for enhanced clarity and efficiency.
- Enable artifact uploads for detailed test results and logs.


  Commit: e2a9b2acaeeeac868cf1d55f459225e683e37d11
      https://github.com/ehb54/ultrascan3/commit/e2a9b2acaeeeac868cf1d55f459225e683e37d11
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-21 (Fri, 21 Nov 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml
    M .github/workflows/unit-tests-v2.yml

  Log Message:
  -----------
  Normalize glob patterns in GitHub Actions workflows


  Commit: 037064b1d8968578fcb9a42ba07e275c96b38a8c
      https://github.com/ehb54/ultrascan3/commit/037064b1d8968578fcb9a42ba07e275c96b38a8c
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-21 (Fri, 21 Nov 2025)

  Changed paths:
    M .github/workflows/unit-tests-v2.yml

  Log Message:
  -----------
  Fix incorrect `CMAKE_MODULE_PATH` to use absolute path in `unit-tests-v2.yml` workflow


  Commit: 4c0538dff646603c4258628a076f9807a29af7c3
      https://github.com/ehb54/ultrascan3/commit/4c0538dff646603c4258628a076f9807a29af7c3
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-21 (Fri, 21 Nov 2025)

  Changed paths:
    M .github/workflows/unit-tests.yml

  Log Message:
  -----------
  Enhance `unit-tests.yml` workflow with dynamic file change detection and improved concurrency management

- Add `changed-files` job to detect relevant modifications and conditionally trigger unit tests.
- Introduce concurrency control to prevent duplicate runs.
- Expand artifacts to include additional logs for better debugging.
- Add status-checking job to validate unit testing outcomes.
- Refactor workflow for clarity and streamlined test execution.


  Commit: 12e9e1fd701da2b201e7d47b3cb642812813e4e7
      https://github.com/ehb54/ultrascan3/commit/12e9e1fd701da2b201e7d47b3cb642812813e4e7
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-21 (Fri, 21 Nov 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  Enhance `static-analysis.yml` workflow with CPP file-specific change detection

- Add outputs and environment variables to track `.cpp` and `.h` file changes.
- Update `changed-files` step to simplify logic and rely on filtered outputs.
- Streamline file detection for first commits and pull requests.


  Commit: e94063c15730a822262820f18c468a429ac4c374
      https://github.com/ehb54/ultrascan3/commit/e94063c15730a822262820f18c468a429ac4c374
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-21 (Fri, 21 Nov 2025)

  Changed paths:
    M .github/workflows/unit-tests.yml

  Log Message:
  -----------
  Normalize glob pattern syntax in `unit-tests.yml` workflow


  Commit: 158b855316998f18924177b91ad5cb81e696ad53
      https://github.com/ehb54/ultrascan3/commit/158b855316998f18924177b91ad5cb81e696ad53
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-21 (Fri, 21 Nov 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  Update static-analysis workflow to use latest `us3comp` container image


  Commit: e1ce700f61527eedba262f237e41dbcc16de6de7
      https://github.com/ehb54/ultrascan3/commit/e1ce700f61527eedba262f237e41dbcc16de6de7
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-22 (Sat, 22 Nov 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  Update file patterns for static analysis


  Commit: aebbdda924bca0630a6b1b50f5110f340c8804aa
      https://github.com/ehb54/ultrascan3/commit/aebbdda924bca0630a6b1b50f5110f340c8804aa
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-22 (Sat, 22 Nov 2025)

  Changed paths:
    M .github/workflows/codeql-analysis.yml

  Log Message:
  -----------
  Update CodeQL workflow to ignore specific files

Ignore changes in us_mpi_analysis directory during file checks and update build commands.


  Commit: a4a655d619279b7bb59e01ee82fce46e875eebca
      https://github.com/ehb54/ultrascan3/commit/a4a655d619279b7bb59e01ee82fce46e875eebca
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-22 (Sat, 22 Nov 2025)

  Changed paths:
    M .github/workflows/codeql-analysis.yml

  Log Message:
  -----------
  Exclude us_mpi_analysis from CodeQL analysis gui


  Commit: 14ba4d63b16861ed659ae0c204b0ee3f54589432
      https://github.com/ehb54/ultrascan3/commit/14ba4d63b16861ed659ae0c204b0ee3f54589432
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-11-22 (Sat, 22 Nov 2025)

  Changed paths:
    M .github/workflows/codeql-analysis.yml

  Log Message:
  -----------
  Fix syntax for exclusion in CodeQL workflow


  Commit: 3f56d29bde0ad6a71c607a8bcfb56bc7caca4961
      https://github.com/ehb54/ultrascan3/commit/3f56d29bde0ad6a71c607a8bcfb56bc7caca4961
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-11-24 (Mon, 24 Nov 2025)

  Changed paths:
    M gui/us_combined_plots_parms_gui.cpp
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_protocol_dev/us_protocol_dev_gui.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/gh_actions


  Commit: c088a80976663c552cffec04fcb0cfe084922560
      https://github.com/ehb54/ultrascan3/commit/c088a80976663c552cffec04fcb0cfe084922560
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-11-24 (Mon, 24 Nov 2025)

  Changed paths:
    R .github/workflows/.yamllint.yml
    M .github/workflows/codeql-analysis.yml
    M .github/workflows/doc-build.yml
    M .github/workflows/static-analysis.yml
    A .github/workflows/unit-tests-v2.yml
    M .github/workflows/unit-tests.yml
    A admin/linting/cmake/.cmake-format.yaml
    A admin/linting/cmake/README.md
    A admin/linting/yaml/.yamllint.yml

  Log Message:
  -----------
  Merge pull request #321 from ehb54/lukas/gh_actions

Lukas/gh actions


Compare: https://github.com/ehb54/ultrascan3/compare/770769aa570a...c088a8097666

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