[us-commits] [ehb54/ultrascan3] a4fcd0: GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps ...
Borries Demeler
noreply at github.com
Thu Oct 2 10:23:13 MDT 2025
Branch: refs/heads/master
Home: https://github.com/ehb54/ultrascan3
Commit: a4fcd0c5999879b9af70342cbf2a4d40b9d2b803
https://github.com/ehb54/ultrascan3/commit/a4fcd0c5999879b9af70342cbf2a4d40b9d2b803
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-21 (Sun, 21 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
M gui/us_scan_excl_gui.h
M programs/us_analysis_profile/us_analysis_profile.cpp
M utils/us_ana_profile.cpp
M utils/us_ana_profile.h
Log Message:
-----------
GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 1246e6e3724e8a382585cc65e0208d3008bfbeeb
https://github.com/ehb54/ultrascan3/commit/1246e6e3724e8a382585cc65e0208d3008bfbeeb
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
Log Message:
-----------
[1a]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 5e6c7f858d8e6163099c500c970c02e54801243b
https://github.com/ehb54/ultrascan3/commit/5e6c7f858d8e6163099c500c970c02e54801243b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[2]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 5c98f81ac04ec7e465bdc36d6c858c27e3f146a1
https://github.com/ehb54/ultrascan3/commit/5c98f81ac04ec7e465bdc36d6c858c27e3f146a1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[3]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 5edb9ce91335769271fb5f593482a97dc4233059
https://github.com/ehb54/ultrascan3/commit/5edb9ce91335769271fb5f593482a97dc4233059
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[4]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 9aff495b37873080961f8c231a3ce673377f80d3
https://github.com/ehb54/ultrascan3/commit/9aff495b37873080961f8c231a3ce673377f80d3
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[5]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 1351f83ecb06b104ec53c3eac4dfa8e1deb9e008
https://github.com/ehb54/ultrascan3/commit/1351f83ecb06b104ec53c3eac4dfa8e1deb9e008
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[5a]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 321a8cba345ec3c3f2187e0ba10f28376fd49a3e
https://github.com/ehb54/ultrascan3/commit/321a8cba345ec3c3f2187e0ba10f28376fd49a3e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit_main.cpp
Log Message:
-----------
[5b-TEST]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 373ac0ac501856ea0df8f4f579f953d89ec810b0
https://github.com/ehb54/ultrascan3/commit/373ac0ac501856ea0df8f4f579f953d89ec810b0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[6b-TEST]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: ea3905ba9097c5eed14e034d6656fd0c84dff988
https://github.com/ehb54/ultrascan3/commit/ea3905ba9097c5eed14e034d6656fd0c84dff988
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit_main.cpp
Log Message:
-----------
[6b-TEST- restore]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: ed8dbfb27ca0afd51e92c0717d6e05536217b8b4
https://github.com/ehb54/ultrascan3/commit/ed8dbfb27ca0afd51e92c0717d6e05536217b8b4
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[7-TEST- restore]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 905f41462ec9dab9667e915d639af2970e21a7a4
https://github.com/ehb54/ultrascan3/commit/905f41462ec9dab9667e915d639af2970e21a7a4
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
Log Message:
-----------
GMP | 1. EXP.: AProfile && 4. EDIT -- [proper settings of min/max for scan_beg|nth|end for different optics systems] init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 671b8e4d0e4951014a52280942d6a6c9712f14fa
https://github.com/ehb54/ultrascan3/commit/671b8e4d0e4951014a52280942d6a6c9712f14fa
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit_main.cpp
Log Message:
-----------
GMP | 1. EXP.: AProfile && 4. EDIT -- [UNIT TEST for multi-channel run] init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: d584fa48438a0f9d744b750a6abe23533cc48b52
https://github.com/ehb54/ultrascan3/commit/d584fa48438a0f9d744b750a6abe23533cc48b52
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit_main.cpp
Log Message:
-----------
GMP | 1. EXP.: AProfile && 4. EDIT -- [RESTORE--UNIT TEST for multi-channel run] init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 84f86b86f77bbcd33e113217d09cbda59701b58b
https://github.com/ehb54/ultrascan3/commit/84f86b86f77bbcd33e113217d09cbda59701b58b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[DEBUGS]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 8ecca10f20a347fd906905b16f8e85ef5afff22a
https://github.com/ehb54/ultrascan3/commit/8ecca10f20a347fd906905b16f8e85ef5afff22a
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[1 DEBUGS]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: fe9b9031b3af683efa02792cf18ca46a51d376d8
https://github.com/ehb54/ultrascan3/commit/fe9b9031b3af683efa02792cf18ca46a51d376d8
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[2 DEBUGS]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 4c16cc30bec6d2d9ea234a0ad826339c18f1dc27
https://github.com/ehb54/ultrascan3/commit/4c16cc30bec6d2d9ea234a0ad826339c18f1dc27
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
GMP | 1. EXP.: AProfile && 4. EDIT -- treat scan exclusion differently for ABDE vs. VELOCITY types (ABDE - usually only last scan remains for each triple, ensured manually; VEL. - based on AProfile's settings beg|nth|end)...
Commit: b1ff389cba607cd5f34556fb6945f050ad099ff8
https://github.com/ehb54/ultrascan3/commit/b1ff389cba607cd5f34556fb6945f050ad099ff8
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-25 (Thu, 25 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...
Commit: b557af349d02a148cef58c38976319f129cf4afa
https://github.com/ehb54/ultrascan3/commit/b557af349d02a148cef58c38976319f129cf4afa
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-25 (Thu, 25 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
[1]GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...
Commit: 57f3b61a10ffe0edcfdee555dbf12a7a6d15dc11
https://github.com/ehb54/ultrascan3/commit/57f3b61a10ffe0edcfdee555dbf12a7a6d15dc11
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-25 (Thu, 25 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[1]GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...
Commit: 825febd6fda9e31b55b9c0e13a0f2af701b3c6e0
https://github.com/ehb54/ultrascan3/commit/825febd6fda9e31b55b9c0e13a0f2af701b3c6e0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-25 (Thu, 25 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[3]GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...
Commit: 4f9217705b688c38c3e420a609c2692c23a7e160
https://github.com/ehb54/ultrascan3/commit/4f9217705b688c38c3e420a609c2692c23a7e160
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-25 (Thu, 25 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[4]GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...
Commit: f8379662ac83a104ca49b29cc3b5a7f830944d05
https://github.com/ehb54/ultrascan3/commit/f8379662ac83a104ca49b29cc3b5a7f830944d05
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-25 (Thu, 25 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[5]GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...
Commit: 036113902d7405af0d641ad3afb98b2010cef02f
https://github.com/ehb54/ultrascan3/commit/036113902d7405af0d641ad3afb98b2010cef02f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-26 (Fri, 26 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit_main.cpp
Log Message:
-----------
[unit test for multi-channel case] GMP | 4. EDIT -- treat scan exclusion differently for ABDE vs. VELOCITY types (ABDE - usually only last scan remains for each triple, ensured manually; VEL. - based on AProfile's settings beg|nth|end)...
Commit: 0fa81d8ac6c3fc80cbfb121038e9a6a0cde634bf
https://github.com/ehb54/ultrascan3/commit/0fa81d8ac6c3fc80cbfb121038e9a6a0cde634bf
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-26 (Fri, 26 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit_main.cpp
Log Message:
-----------
[REstore form -- unit test for multi-channel case] GMP | 4. EDIT -- treat scan exclusion differently for ABDE vs. VELOCITY types (ABDE - usually only last scan remains for each triple, ensured manually; VEL. - based on AProfile's settings beg|nth|end)...
Commit: 42b30b23222d6e9b070861a382ebe34ad77611ab
https://github.com/ehb54/ultrascan3/commit/42b30b23222d6e9b070861a382ebe34ad77611ab
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-26 (Fri, 26 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | 6. REPORT -- do not display scan exclusion settings Scan section if optics type not used...
Commit: e3282fcfa778c046776d3abf2a718a9617230b4d
https://github.com/ehb54/ultrascan3/commit/e3282fcfa778c046776d3abf2a718a9617230b4d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-29 (Mon, 29 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP | 6. REPORT -- do not specify details on Scan exlusions of there were no any...
Commit: 8a112ba9e5ae7859d58f117c486f2e52cbba2899
https://github.com/ehb54/ultrascan3/commit/8a112ba9e5ae7859d58f117c486f2e52cbba2899
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-29 (Mon, 29 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[1]GMP | 6. REPORT -- do not specify details on Scan exlusions of there were no any...
Commit: d1287da6bdde6dcb79acc019617ea24b5d93d410
https://github.com/ehb54/ultrascan3/commit/d1287da6bdde6dcb79acc019617ea24b5d93d410
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-29 (Mon, 29 Sep 2025)
Changed paths:
A admin/pam/pam_no_ad/Makefile
A admin/pam/pam_no_ad/README.md
A admin/pam/pam_no_ad/files/mariadb
A admin/pam/pam_no_ad/files/php
A admin/pam/pam_no_ad/files/sssd.conf
A admin/pam/pam_no_ad/files/system-auth-nosss
A admin/pam/pam_no_ad/pam_auth_pamtester.php
A admin/pam/pam_no_ad/pam_auth_test.php
M gui/us_analysis_base2.cpp
M gui/us_model_loader.cpp
M programs/us_2dsa/us_2dsa.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_fematch/us_resplot_fem.cpp
M programs/us_fit_meniscus/us_fit_meniscus.cpp
M programs/us_fit_meniscus/us_fit_meniscus_main.cpp
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
M utils/us_ana_profile.cpp
M utils/us_ana_profile.h
M utils/us_astfem_math.cpp
M utils/us_astfem_math.h
Log Message:
-----------
Merge pull request #265 from ehb54/master
add master
Commit: 8dff3550c25c2827799de8e3f245f1f34a9044ab
https://github.com/ehb54/ultrascan3/commit/8dff3550c25c2827799de8e3f245f1f34a9044ab
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-29 (Mon, 29 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
[2]GMP | 6. REPORT -- do not specify details on Scan exlusions of there were no any...
Commit: d927f1c7acffd7436189c83726111d960cbd1e2d
https://github.com/ehb54/ultrascan3/commit/d927f1c7acffd7436189c83726111d960cbd1e2d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-30 (Tue, 30 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
Log Message:
-----------
GMP | 1. EXP.:APorile:ScanExcls. -- do not allow remainig scans to be less than 3 per channel;restore otherwise...
Commit: 4c3a97f136b46591a7381b85fb726ea2fb87f7f2
https://github.com/ehb54/ultrascan3/commit/4c3a97f136b46591a7381b85fb726ea2fb87f7f2
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-30 (Tue, 30 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
M gui/us_scan_excl_gui.h
Log Message:
-----------
GMP | 1. EXP.:APorile:ScanExcls. -- [Modified logic for--] do not allow remainig scans to be less than 3 per channel;restore otherwise...
Commit: 7c65e196caeaf47f46d74fe305d0dec5c3f6f4e1
https://github.com/ehb54/ultrascan3/commit/7c65e196caeaf47f46d74fe305d0dec5c3f6f4e1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-30 (Tue, 30 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
Log Message:
-----------
[1]GMP | 1. EXP.:APorile:ScanExcls. -- [Modified logic for--] do not allow remainig scans to be less than 3 per channel;restore otherwise...
Commit: 07f7d5c89032aa8dac1c13fe611e51d8e076cfde
https://github.com/ehb54/ultrascan3/commit/07f7d5c89032aa8dac1c13fe611e51d8e076cfde
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-30 (Tue, 30 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
Log Message:
-----------
GMP | 1. EXP.:APorile:ScanExcls. -- backward compatibility with older protocols with no nth scan excl. settings...
Commit: 232008ddbb42fa37d28890542961579241726f13
https://github.com/ehb54/ultrascan3/commit/232008ddbb42fa37d28890542961579241726f13
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-30 (Tue, 30 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
Log Message:
-----------
[1]GMP | 1. EXP.:APorile:ScanExcls. -- backward compatibility with older protocols with no nth scan excl. settings...
Commit: 003fcead31be5da3e4a5744bd8b5a9a3adb9686d
https://github.com/ehb54/ultrascan3/commit/003fcead31be5da3e4a5744bd8b5a9a3adb9686d
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-10-02 (Thu, 02 Oct 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
M gui/us_scan_excl_gui.h
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M utils/us_ana_profile.cpp
M utils/us_ana_profile.h
Log Message:
-----------
Merge pull request #267 from ehb54/alexey-dev-issue556
Alexey dev issue556: Scan Exclusion Profile Editor for AProfile in GMP #556
Compare: https://github.com/ehb54/ultrascan3/compare/f286c4ffff80...003fcead31be
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