From noreply at github.com  Mon Sep  1 16:35:58 2025
From: noreply at github.com (aaron-auc)
Date: Mon, 01 Sep 2025 15:35:58 -0700
Subject: [us-commits] [ehb54/ultrascan3] 217485: error in build related to
 iusdb2, cmake build for ...
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/4ba0f8-217485@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 217485a90c5e92e0e810e5e3dfe2dac0177b8b35
      https://github.com/ehb54/ultrascan3/commit/217485a90c5e92e0e810e5e3dfe2dac0177b8b35
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-01 (Mon, 01 Sep 2025)

  Changed paths:
    M CMakeLists.txt
    A admin/cmake/FindQwt.cmake
    A admin/cmake/us_version.h.in
    R admin/test/cmake/hints.cmake
    M admin/test/docker/Dockerfile
    M gui/CMakeLists.txt
    M gui/us_buffer_gui.cpp
    M gui/us_data_loader.cpp
    M gui/us_failed_gmp_run_gui.cpp
    M gui/us_load_auc.cpp
    M gui/us_loadable_noise.cpp
    M gui/us_model_gui.cpp
    M gui/us_model_loader.cpp
    M gui/us_noise_loader.cpp
    M gui/us_noise_loader.h
    M gui/us_project_gui.cpp
    M gui/us_rotor_gui.cpp
    M gui/us_solution_gui.cpp
    A programs/CMakeLists.txt
    M programs/us/us.cpp
    M programs/us/us_win_data.cpp
    A programs/us_autoflow_analysis/CMakeLists.txt
    A programs/us_com_project/CMakelists.txt
    A programs/us_com_project_academic/CMakeLists.txt
    M programs/us_config/us_database.cpp
    M programs/us_config/us_xpnhost_db.cpp
    M programs/us_convert/us_select_triples.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_edit/us_edit.cpp
    A programs/us_experiment/CMakeLists.txt
    A programs/us_fematch/CMakeLists.txt
    A programs/us_fit_meniscus/CMakeLists.txt
    A programs/us_mwl_species_fit/CMakeLists.txt
    M programs/us_pcsa/us_pcsa.cpp
    A programs/us_protocol_dev/CMakeLists.txt
    A programs/us_query_rmsd/CMakeLists.txt
    M programs/us_ramp/us_experiment_gui_ra.cpp
    M programs/us_ramp/us_get_dbrun_ra.cpp
    M programs/us_ramp/us_ramp_gui.cpp
    A programs/us_reporter_gmp/CMakeLists.txt
    M test-docker.sh
    M test/utils/CMakeLists.txt
    M test/utils/test_us_astfem_rsa.cpp
    M test/utils/test_us_buffer.cpp
    M test/utils/test_us_db2.cpp
    M utils/CMakeLists.txt

  Log Message:
  -----------
  error in build related to iusdb2, cmake build for programs, and working unit tests



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From noreply at github.com  Mon Sep  1 16:52:57 2025
From: noreply at github.com (aaron-auc)
Date: Mon, 01 Sep 2025 15:52:57 -0700
Subject: [us-commits] [ehb54/ultrascan3] 840165: move unit tests trigger to
 separate file
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/217485-840165@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 8401655782f10eb593ea8537ea59378e3da8f03b
      https://github.com/ehb54/ultrascan3/commit/8401655782f10eb593ea8537ea59378e3da8f03b
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-01 (Mon, 01 Sep 2025)

  Changed paths:
    M .github/workflows/codeql-analysis.yml
    A .github/workflows/unit-tests.yml

  Log Message:
  -----------
  move unit tests trigger to separate file



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From noreply at github.com  Mon Sep  1 17:11:02 2025
From: noreply at github.com (aaron-auc)
Date: Mon, 01 Sep 2025 16:11:02 -0700
Subject: [us-commits] [ehb54/ultrascan3] 73021e: add us_com_project
 cmakelists
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/840165-73021e@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 73021e71e98437f3583fc6edcaf0fe2faf72d5fd
      https://github.com/ehb54/ultrascan3/commit/73021e71e98437f3583fc6edcaf0fe2faf72d5fd
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-01 (Mon, 01 Sep 2025)

  Changed paths:
    M programs/us_com_project/CMakelists.txt
    A qwtplot3d/CMakeLists.txt

  Log Message:
  -----------
  add us_com_project cmakelists



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From noreply at github.com  Mon Sep  1 17:15:40 2025
From: noreply at github.com (aaron-auc)
Date: Mon, 01 Sep 2025 16:15:40 -0700
Subject: [us-commits] [ehb54/ultrascan3] c9030e: fix us_com_project
 cmakelists had lowercase l in name
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/73021e-c9030e@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: c9030ec25f5d2ce4547c140beaf0d06baa785f4a
      https://github.com/ehb54/ultrascan3/commit/c9030ec25f5d2ce4547c140beaf0d06baa785f4a
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-01 (Mon, 01 Sep 2025)

  Changed paths:
    A programs/us_com_project/CMakeLists.txt
    R programs/us_com_project/CMakelists.txt

  Log Message:
  -----------
  fix us_com_project cmakelists had lowercase l in name



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From noreply at github.com  Mon Sep  1 17:55:04 2025
From: noreply at github.com (aaron-auc)
Date: Mon, 01 Sep 2025 16:55:04 -0700
Subject: [us-commits] [ehb54/ultrascan3] 7edcb7: modifed static-analysis.yml
 should not run and not...
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/c9030e-7edcb7@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 7edcb7cb1815454a3c1517671b8f46ba157b7fd5
      https://github.com/ehb54/ultrascan3/commit/7edcb7cb1815454a3c1517671b8f46ba157b7fd5
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-01 (Mon, 01 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  modifed static-analysis.yml should not run and not send email



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From noreply at github.com  Mon Sep  1 18:17:09 2025
From: noreply at github.com (aaron-auc)
Date: Mon, 01 Sep 2025 17:17:09 -0700
Subject: [us-commits] [ehb54/ultrascan3] a414cf: modifed static-analysis.yml
 running but non-failing
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/7edcb7-a414cf@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: a414cfc8f6a9b899f987a41925b89b2a948b954a
      https://github.com/ehb54/ultrascan3/commit/a414cfc8f6a9b899f987a41925b89b2a948b954a
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-01 (Mon, 01 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  modifed static-analysis.yml running but non-failing



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From noreply at github.com  Mon Sep  1 18:33:43 2025
From: noreply at github.com (aaron-auc)
Date: Mon, 01 Sep 2025 17:33:43 -0700
Subject: [us-commits] [ehb54/ultrascan3] 09d7e2: modifed static-analysis.yml
 install libqwt-qt5-dev
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/a414cf-09d7e2@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 09d7e2075e6ba517445079e50e2410866d36ef05
      https://github.com/ehb54/ultrascan3/commit/09d7e2075e6ba517445079e50e2410866d36ef05
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-01 (Mon, 01 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  modifed static-analysis.yml install libqwt-qt5-dev



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From noreply at github.com  Mon Sep  1 18:39:52 2025
From: noreply at github.com (aaron-auc)
Date: Mon, 01 Sep 2025 17:39:52 -0700
Subject: [us-commits] [ehb54/ultrascan3] 6014d3: modifed static-analysis.yml
 use cmake
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/09d7e2-6014d3@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 6014d3b78be1f58f196982b8e963eb9a1fd10650
      https://github.com/ehb54/ultrascan3/commit/6014d3b78be1f58f196982b8e963eb9a1fd10650
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-01 (Mon, 01 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  modifed static-analysis.yml use cmake



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From noreply at github.com  Mon Sep  1 18:49:54 2025
From: noreply at github.com (aaron-auc)
Date: Mon, 01 Sep 2025 17:49:54 -0700
Subject: [us-commits] [ehb54/ultrascan3] 86802e: modifed static-analysis.yml
 use cmake
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/6014d3-86802e@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 86802e7c8b63d5dafae200d92ab4edd449a76122
      https://github.com/ehb54/ultrascan3/commit/86802e7c8b63d5dafae200d92ab4edd449a76122
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-01 (Mon, 01 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  modifed static-analysis.yml use cmake



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From noreply at github.com  Mon Sep  1 19:15:02 2025
From: noreply at github.com (aaron-auc)
Date: Mon, 01 Sep 2025 18:15:02 -0700
Subject: [us-commits] [ehb54/ultrascan3] 1c1fe3: modifed static-analysis.yml
 remove format check
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/86802e-1c1fe3@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 1c1fe3aebbc7885934e26733499fdc6e3443cd25
      https://github.com/ehb54/ultrascan3/commit/1c1fe3aebbc7885934e26733499fdc6e3443cd25
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-01 (Mon, 01 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  modifed static-analysis.yml remove format check



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From noreply at github.com  Mon Sep  1 19:52:52 2025
From: noreply at github.com (aaron-auc)
Date: Mon, 01 Sep 2025 18:52:52 -0700
Subject: [us-commits] [ehb54/ultrascan3] 3233b0: modifed static-analysis.yml
 add link to download r...
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/1c1fe3-3233b0@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 3233b04bc62aab8845cf7c8bf59c60dc51bd523d
      https://github.com/ehb54/ultrascan3/commit/3233b04bc62aab8845cf7c8bf59c60dc51bd523d
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-01 (Mon, 01 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  modifed static-analysis.yml add link to download report



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From noreply at github.com  Mon Sep  1 20:00:08 2025
From: noreply at github.com (aaron-auc)
Date: Mon, 01 Sep 2025 19:00:08 -0700
Subject: [us-commits] [ehb54/ultrascan3] e076c7: fix static-analysis.yml add
 link to download report
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/3233b0-e076c7@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: e076c7611f335e0b9a94cb2419831d0d019f382f
      https://github.com/ehb54/ultrascan3/commit/e076c7611f335e0b9a94cb2419831d0d019f382f
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-01 (Mon, 01 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  fix static-analysis.yml add link to download report



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From noreply at github.com  Mon Sep  1 20:07:39 2025
From: noreply at github.com (aaron-auc)
Date: Mon, 01 Sep 2025 19:07:39 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/e076c7-1c1fe3@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Tue Sep  2 09:09:13 2025
From: noreply at github.com (aaron-auc)
Date: Tue, 02 Sep 2025 08:09:13 -0700
Subject: [us-commits] [ehb54/ultrascan3] 545dd0: fix static-analysis.yml
 only check changed files
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/1c1fe3-545dd0@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 545dd0c591ceb5f40b85403fe9d72a8dc2079608
      https://github.com/ehb54/ultrascan3/commit/545dd0c591ceb5f40b85403fe9d72a8dc2079608
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-02 (Tue, 02 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  fix static-analysis.yml only check changed files



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From noreply at github.com  Tue Sep  2 09:15:16 2025
From: noreply at github.com (aaron-auc)
Date: Tue, 02 Sep 2025 08:15:16 -0700
Subject: [us-commits] [ehb54/ultrascan3] ff3844: fix static-analysis.yml env
 variable handling
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/545dd0-ff3844@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: ff38446e4155e613f61b9ccfdadc5141796dba1d
      https://github.com/ehb54/ultrascan3/commit/ff38446e4155e613f61b9ccfdadc5141796dba1d
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-02 (Tue, 02 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  fix static-analysis.yml env variable handling



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From noreply at github.com  Tue Sep  2 09:31:26 2025
From: noreply at github.com (aaron-auc)
Date: Tue, 02 Sep 2025 08:31:26 -0700
Subject: [us-commits] [ehb54/ultrascan3] 44dc6b: fix static-analysis.yml env
 variable handling
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/ff3844-44dc6b@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 44dc6b5ad0d3a3b1288a71a6096e71bcf767d2fb
      https://github.com/ehb54/ultrascan3/commit/44dc6b5ad0d3a3b1288a71a6096e71bcf767d2fb
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-02 (Tue, 02 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  fix static-analysis.yml env variable handling



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From noreply at github.com  Tue Sep  2 10:58:06 2025
From: noreply at github.com (alexsav815)
Date: Tue, 02 Sep 2025 09:58:06 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue543/000000-55c201@github.com>

  Branch: refs/heads/alexey-dev-issue543
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Tue Sep  2 11:25:04 2025
From: noreply at github.com (aaron-auc)
Date: Tue, 02 Sep 2025 10:25:04 -0700
Subject: [us-commits] [ehb54/ultrascan3] ef4c4e: mod workflow triggers to
 push or pr on master only
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/44dc6b-ef4c4e@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: ef4c4e8e42954ff80a0ef6df92e9b990b7edaa68
      https://github.com/ehb54/ultrascan3/commit/ef4c4e8e42954ff80a0ef6df92e9b990b7edaa68
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-02 (Tue, 02 Sep 2025)

  Changed paths:
    M .github/workflows/codeql-analysis.yml
    M .github/workflows/static-analysis.yml
    M .github/workflows/unit-tests.yml

  Log Message:
  -----------
  mod workflow triggers to push or pr on master only



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From noreply at github.com  Tue Sep  2 12:26:47 2025
From: noreply at github.com (alexsav815)
Date: Tue, 02 Sep 2025 11:26:47 -0700
Subject: [us-commits] [ehb54/ultrascan3] befe3e: GMP | 1. EXP.: 8.Aprofile
 -- custom grid implement...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue543/55c201-befe3e@github.com>

  Branch: refs/heads/alexey-dev-issue543
  Home:   https://github.com/ehb54/ultrascan3
  Commit: befe3e2ed9031970d5d93eb3b0080c35868d586b
      https://github.com/ehb54/ultrascan3/commit/befe3e2ed9031970d5d93eb3b0080c35868d586b
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-02 (Tue, 02 Sep 2025)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h

  Log Message:
  -----------
  GMP | 1. EXP.: 8.Aprofile -- custom grid implementation...



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From noreply at github.com  Tue Sep  2 12:43:15 2025
From: noreply at github.com (alexsav815)
Date: Tue, 02 Sep 2025 11:43:15 -0700
Subject: [us-commits] [ehb54/ultrascan3] a75768: [2]GMP | 1. EXP.:
 8.Aprofile -- custom grid implem...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue543/befe3e-a75768@github.com>

  Branch: refs/heads/alexey-dev-issue543
  Home:   https://github.com/ehb54/ultrascan3
  Commit: a757689d32acc3aff80b1e0c9b5d4f580c01ffc9
      https://github.com/ehb54/ultrascan3/commit/a757689d32acc3aff80b1e0c9b5d4f580c01ffc9
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-02 (Tue, 02 Sep 2025)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h

  Log Message:
  -----------
  [2]GMP | 1. EXP.: 8.Aprofile -- custom grid implementation...



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From noreply at github.com  Tue Sep  2 13:17:49 2025
From: noreply at github.com (alexsav815)
Date: Tue, 02 Sep 2025 12:17:49 -0700
Subject: [us-commits] [ehb54/ultrascan3] 6f9f6d: [3]GMP | 1. EXP.:
 8.Aprofile -- custom grid implem...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue543/a75768-6f9f6d@github.com>

  Branch: refs/heads/alexey-dev-issue543
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 6f9f6d81148a6128933c1a30c8960fc7b0ca9b18
      https://github.com/ehb54/ultrascan3/commit/6f9f6d81148a6128933c1a30c8960fc7b0ca9b18
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-02 (Tue, 02 Sep 2025)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h

  Log Message:
  -----------
  [3]GMP | 1. EXP.: 8.Aprofile -- custom grid implementation...



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From noreply at github.com  Tue Sep  2 13:25:18 2025
From: noreply at github.com (alexsav815)
Date: Tue, 02 Sep 2025 12:25:18 -0700
Subject: [us-commits] [ehb54/ultrascan3] 826cea: [4]GMP | 1. EXP.:
 8.Aprofile -- custom grid implem...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue543/6f9f6d-826cea@github.com>

  Branch: refs/heads/alexey-dev-issue543
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 826cea37317d3d85e5a6c1e9f49a6f11a4456568
      https://github.com/ehb54/ultrascan3/commit/826cea37317d3d85e5a6c1e9f49a6f11a4456568
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-02 (Tue, 02 Sep 2025)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp

  Log Message:
  -----------
  [4]GMP | 1. EXP.: 8.Aprofile -- custom grid implementation...



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From noreply at github.com  Tue Sep  2 15:58:11 2025
From: noreply at github.com (alexsav815)
Date: Tue, 02 Sep 2025 14:58:11 -0700
Subject: [us-commits] [ehb54/ultrascan3] f1864d: [5]GMP | 1. EXP.:
 8.Aprofile -- custom grid implem...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue543/826cea-f1864d@github.com>

  Branch: refs/heads/alexey-dev-issue543
  Home:   https://github.com/ehb54/ultrascan3
  Commit: f1864dd5785437638d1fe97073331b90c06e7c22
      https://github.com/ehb54/ultrascan3/commit/f1864dd5785437638d1fe97073331b90c06e7c22
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-02 (Tue, 02 Sep 2025)

  Changed paths:
    M utils/us_ana_profile.cpp

  Log Message:
  -----------
  [5]GMP | 1. EXP.: 8.Aprofile -- custom grid implementation...



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From noreply at github.com  Tue Sep  2 16:12:24 2025
From: noreply at github.com (alexsav815)
Date: Tue, 02 Sep 2025 15:12:24 -0700
Subject: [us-commits] [ehb54/ultrascan3] 71f247: [6]GMP | 1. EXP.:
 8.Aprofile -- custom grid implem...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue543/f1864d-71f247@github.com>

  Branch: refs/heads/alexey-dev-issue543
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 71f24752c7eede2c90f377adda0d7a22bdacb0a5
      https://github.com/ehb54/ultrascan3/commit/71f24752c7eede2c90f377adda0d7a22bdacb0a5
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-02 (Tue, 02 Sep 2025)

  Changed paths:
    M utils/us_ana_profile.cpp

  Log Message:
  -----------
  [6]GMP | 1. EXP.: 8.Aprofile -- custom grid implementation...



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From noreply at github.com  Tue Sep  2 16:33:36 2025
From: noreply at github.com (alexsav815)
Date: Tue, 02 Sep 2025 15:33:36 -0700
Subject: [us-commits] [ehb54/ultrascan3] b3affb: GMP | 6. REPORT -- modify
 presentaion in case of C...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue543/71f247-b3affb@github.com>

  Branch: refs/heads/alexey-dev-issue543
  Home:   https://github.com/ehb54/ultrascan3
  Commit: b3affb0867414d2529ed378da6d7a56014388ffc
      https://github.com/ehb54/ultrascan3/commit/b3affb0867414d2529ed378da6d7a56014388ffc
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-02 (Tue, 02 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP | 6. REPORT -- modify presentaion in case of CG...



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From noreply at github.com  Thu Sep  4 12:45:43 2025
From: noreply at github.com (Borries Demeler)
Date: Thu, 04 Sep 2025 11:45:43 -0700
Subject: [us-commits] [ehb54/ultrascan3] befe3e: GMP | 1. EXP.: 8.Aprofile
 -- custom grid implement...
Message-ID: <ehb54/ultrascan3/push/refs/heads/master/55c201-f25403@github.com>

  Branch: refs/heads/master
  Home:   https://github.com/ehb54/ultrascan3
  Commit: befe3e2ed9031970d5d93eb3b0080c35868d586b
      https://github.com/ehb54/ultrascan3/commit/befe3e2ed9031970d5d93eb3b0080c35868d586b
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-02 (Tue, 02 Sep 2025)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h

  Log Message:
  -----------
  GMP | 1. EXP.: 8.Aprofile -- custom grid implementation...


  Commit: a757689d32acc3aff80b1e0c9b5d4f580c01ffc9
      https://github.com/ehb54/ultrascan3/commit/a757689d32acc3aff80b1e0c9b5d4f580c01ffc9
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-02 (Tue, 02 Sep 2025)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h

  Log Message:
  -----------
  [2]GMP | 1. EXP.: 8.Aprofile -- custom grid implementation...


  Commit: 6f9f6d81148a6128933c1a30c8960fc7b0ca9b18
      https://github.com/ehb54/ultrascan3/commit/6f9f6d81148a6128933c1a30c8960fc7b0ca9b18
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-02 (Tue, 02 Sep 2025)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h

  Log Message:
  -----------
  [3]GMP | 1. EXP.: 8.Aprofile -- custom grid implementation...


  Commit: 826cea37317d3d85e5a6c1e9f49a6f11a4456568
      https://github.com/ehb54/ultrascan3/commit/826cea37317d3d85e5a6c1e9f49a6f11a4456568
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-02 (Tue, 02 Sep 2025)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp

  Log Message:
  -----------
  [4]GMP | 1. EXP.: 8.Aprofile -- custom grid implementation...


  Commit: f1864dd5785437638d1fe97073331b90c06e7c22
      https://github.com/ehb54/ultrascan3/commit/f1864dd5785437638d1fe97073331b90c06e7c22
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-02 (Tue, 02 Sep 2025)

  Changed paths:
    M utils/us_ana_profile.cpp

  Log Message:
  -----------
  [5]GMP | 1. EXP.: 8.Aprofile -- custom grid implementation...


  Commit: 71f24752c7eede2c90f377adda0d7a22bdacb0a5
      https://github.com/ehb54/ultrascan3/commit/71f24752c7eede2c90f377adda0d7a22bdacb0a5
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-02 (Tue, 02 Sep 2025)

  Changed paths:
    M utils/us_ana_profile.cpp

  Log Message:
  -----------
  [6]GMP | 1. EXP.: 8.Aprofile -- custom grid implementation...


  Commit: b3affb0867414d2529ed378da6d7a56014388ffc
      https://github.com/ehb54/ultrascan3/commit/b3affb0867414d2529ed378da6d7a56014388ffc
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-02 (Tue, 02 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP | 6. REPORT -- modify presentaion in case of CG...


  Commit: f254035dd92e63c66f56cf040d8b7a153ccf21c1
      https://github.com/ehb54/ultrascan3/commit/f254035dd92e63c66f56cf040d8b7a153ccf21c1
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-09-04 (Thu, 04 Sep 2025)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M utils/us_ana_profile.cpp

  Log Message:
  -----------
  Merge pull request #259 from ehb54/alexey-dev-issue543

Alexey dev issue543: Custom Grid in GMP, GUI/protocol/report portions


Compare: https://github.com/ehb54/ultrascan3/compare/55c201891699...f254035dd92e

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From noreply at github.com  Thu Sep  4 12:45:44 2025
From: noreply at github.com (Borries Demeler)
Date: Thu, 04 Sep 2025 11:45:44 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue543/b3affb-000000@github.com>

  Branch: refs/heads/alexey-dev-issue543
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Thu Sep  4 16:10:22 2025
From: noreply at github.com (aaron-auc)
Date: Thu, 04 Sep 2025 15:10:22 -0700
Subject: [us-commits] [ehb54/ultrascan3] 42e263: code cleanup before PR
 review
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/ef4c4e-42e263@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 42e26337f0dd52027b91e41ba3af0f9e1b626a24
      https://github.com/ehb54/ultrascan3/commit/42e26337f0dd52027b91e41ba3af0f9e1b626a24
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-04 (Thu, 04 Sep 2025)

  Changed paths:
    M .github/workflows/codeql-analysis.yml
    M .gitignore
    R admin/codeql/custom-queries/cpp/codeql-pack.yml
    R admin/codeql/custom-queries/cpp/find-unused-functions.ql
    M gui/CMakeLists.txt
    M gui/us_buffer_gui.cpp
    M gui/us_data_loader.cpp
    M gui/us_load_auc.cpp
    M gui/us_loadable_noise.cpp
    R gui/us_model_editor.cpp
    R gui/us_model_editor.h
    M gui/us_model_gui.cpp
    M gui/us_model_loader.h
    M gui/us_noise_loader.h
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_edit/us_edit.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  code cleanup before PR review



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From noreply at github.com  Thu Sep  4 17:54:22 2025
From: noreply at github.com (aaron-auc)
Date: Thu, 04 Sep 2025 16:54:22 -0700
Subject: [us-commits] [ehb54/ultrascan3] 44bab6: GMP | R&D: 2. LIVE_UPDATE
 -- potential fixes for d...
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/42e263-895bcc@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 44bab627dcc91b01e021d5332de8d038b7bc3de4
      https://github.com/ehb54/ultrascan3/commit/44bab627dcc91b01e021d5332de8d038b7bc3de4
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-08-28 (Thu, 28 Aug 2025)

  Changed paths:
    M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp

  Log Message:
  -----------
  GMP | R&D: 2. LIVE_UPDATE -- potential fixes for dropped usiab-to-optima connection during various live update stages...


  Commit: 54c57691b594fde24dc40f2e99e4c3f485207899
      https://github.com/ehb54/ultrascan3/commit/54c57691b594fde24dc40f2e99e4c3f485207899
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-08-28 (Thu, 28 Aug 2025)

  Changed paths:
    M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp

  Log Message:
  -----------
  [1]GMP | R&D: 2. LIVE_UPDATE -- potential fixes for dropped usiab-to-optima connection during various live update stages...


  Commit: 6eb23eb217129f6cfa083e4c2d132b81eeb79449
      https://github.com/ehb54/ultrascan3/commit/6eb23eb217129f6cfa083e4c2d132b81eeb79449
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-08-28 (Thu, 28 Aug 2025)

  Changed paths:
    M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp

  Log Message:
  -----------
  [2]GMP | R&D: 2. LIVE_UPDATE -- potential fixes for dropped usiab-to-optima connection during various live update stages...


  Commit: b8424a8bc274fff5f4fb289c552e31023d1ec512
      https://github.com/ehb54/ultrascan3/commit/b8424a8bc274fff5f4fb289c552e31023d1ec512
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-08-28 (Thu, 28 Aug 2025)

  Changed paths:
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h

  Log Message:
  -----------
  GMP | R&D: Run MANAGER -- fix for the wrong event on refreshig Optima Runs Statuses causing forced setting new experiment upon attemt to re-attach...


  Commit: a6089455c047284229de979dc3cff6160bedc1e0
      https://github.com/ehb54/ultrascan3/commit/a6089455c047284229de979dc3cff6160bedc1e0
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-08-29 (Fri, 29 Aug 2025)

  Changed paths:
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h

  Log Message:
  -----------
  Merge pull request #258 from ehb54/alexey-dev-issue545

GMP | R&D: Run MANAGER -- fix for the wrong event on refreshig Optima?


  Commit: 55c201891699765e68d8771a3dd08daf89b25169
      https://github.com/ehb54/ultrascan3/commit/55c201891699765e68d8771a3dd08daf89b25169
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-08-29 (Fri, 29 Aug 2025)

  Changed paths:
    M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp

  Log Message:
  -----------
  Merge pull request #257 from ehb54/alexey-dev-issue544

GMP | R&D: 2. LIVE_UPDATE -- potential fixes for dropped usiab-to-optima


  Commit: befe3e2ed9031970d5d93eb3b0080c35868d586b
      https://github.com/ehb54/ultrascan3/commit/befe3e2ed9031970d5d93eb3b0080c35868d586b
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-02 (Tue, 02 Sep 2025)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h

  Log Message:
  -----------
  GMP | 1. EXP.: 8.Aprofile -- custom grid implementation...


  Commit: a757689d32acc3aff80b1e0c9b5d4f580c01ffc9
      https://github.com/ehb54/ultrascan3/commit/a757689d32acc3aff80b1e0c9b5d4f580c01ffc9
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-02 (Tue, 02 Sep 2025)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h

  Log Message:
  -----------
  [2]GMP | 1. EXP.: 8.Aprofile -- custom grid implementation...


  Commit: 6f9f6d81148a6128933c1a30c8960fc7b0ca9b18
      https://github.com/ehb54/ultrascan3/commit/6f9f6d81148a6128933c1a30c8960fc7b0ca9b18
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-02 (Tue, 02 Sep 2025)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h

  Log Message:
  -----------
  [3]GMP | 1. EXP.: 8.Aprofile -- custom grid implementation...


  Commit: 826cea37317d3d85e5a6c1e9f49a6f11a4456568
      https://github.com/ehb54/ultrascan3/commit/826cea37317d3d85e5a6c1e9f49a6f11a4456568
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-02 (Tue, 02 Sep 2025)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp

  Log Message:
  -----------
  [4]GMP | 1. EXP.: 8.Aprofile -- custom grid implementation...


  Commit: f1864dd5785437638d1fe97073331b90c06e7c22
      https://github.com/ehb54/ultrascan3/commit/f1864dd5785437638d1fe97073331b90c06e7c22
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-02 (Tue, 02 Sep 2025)

  Changed paths:
    M utils/us_ana_profile.cpp

  Log Message:
  -----------
  [5]GMP | 1. EXP.: 8.Aprofile -- custom grid implementation...


  Commit: 71f24752c7eede2c90f377adda0d7a22bdacb0a5
      https://github.com/ehb54/ultrascan3/commit/71f24752c7eede2c90f377adda0d7a22bdacb0a5
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-02 (Tue, 02 Sep 2025)

  Changed paths:
    M utils/us_ana_profile.cpp

  Log Message:
  -----------
  [6]GMP | 1. EXP.: 8.Aprofile -- custom grid implementation...


  Commit: b3affb0867414d2529ed378da6d7a56014388ffc
      https://github.com/ehb54/ultrascan3/commit/b3affb0867414d2529ed378da6d7a56014388ffc
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-02 (Tue, 02 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP | 6. REPORT -- modify presentaion in case of CG...


  Commit: f254035dd92e63c66f56cf040d8b7a153ccf21c1
      https://github.com/ehb54/ultrascan3/commit/f254035dd92e63c66f56cf040d8b7a153ccf21c1
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-09-04 (Thu, 04 Sep 2025)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M utils/us_ana_profile.cpp

  Log Message:
  -----------
  Merge pull request #259 from ehb54/alexey-dev-issue543

Alexey dev issue543: Custom Grid in GMP, GUI/protocol/report portions


  Commit: 895bcceea66cf95608da4f456620659d8e9517d5
      https://github.com/ehb54/ultrascan3/commit/895bcceea66cf95608da4f456620659d8e9517d5
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2025-09-04 (Thu, 04 Sep 2025)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
    M utils/us_ana_profile.cpp

  Log Message:
  -----------
  Merge pull request #260 from ehb54/master

commit update


Compare: https://github.com/ehb54/ultrascan3/compare/42e26337f0dd...895bcceea66c

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From noreply at github.com  Fri Sep  5 07:19:50 2025
From: noreply at github.com (aaron-auc)
Date: Fri, 05 Sep 2025 06:19:50 -0700
Subject: [us-commits] [ehb54/ultrascan3] 19e27c: mod: better reporting of
 critical issues
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/895bcc-3d25a6@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 19e27c3ec7093c10f143441101c85d0af09b12ac
      https://github.com/ehb54/ultrascan3/commit/19e27c3ec7093c10f143441101c85d0af09b12ac
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-05 (Fri, 05 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  mod: better reporting of critical issues


  Commit: 3d25a66f7dcdd4e3a849f5ea31ae253f22c303be
      https://github.com/ehb54/ultrascan3/commit/3d25a66f7dcdd4e3a849f5ea31ae253f22c303be
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-05 (Fri, 05 Sep 2025)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
    M utils/us_ana_profile.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/aaron-dev-test-utils' into aaron-dev-test-utils


Compare: https://github.com/ehb54/ultrascan3/compare/895bcceea66c...3d25a66f7dcd

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From noreply at github.com  Fri Sep  5 11:11:56 2025
From: noreply at github.com (aaron-auc)
Date: Fri, 05 Sep 2025 10:11:56 -0700
Subject: [us-commits] [ehb54/ultrascan3] eaf7d5: mod: artifact upload fix
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/3d25a6-eaf7d5@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: eaf7d5bc8dae71e71e890cbec10deb318fe0862c
      https://github.com/ehb54/ultrascan3/commit/eaf7d5bc8dae71e71e890cbec10deb318fe0862c
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-05 (Fri, 05 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  mod: artifact upload fix



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From noreply at github.com  Fri Sep  5 13:26:49 2025
From: noreply at github.com (aaron-auc)
Date: Fri, 05 Sep 2025 12:26:49 -0700
Subject: [us-commits] [ehb54/ultrascan3] 1ee227: fix: critical count and
 report not matching
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/eaf7d5-1ee227@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 1ee227e5c34daff6007f34ccaa2b9d5e793544a5
      https://github.com/ehb54/ultrascan3/commit/1ee227e5c34daff6007f34ccaa2b9d5e793544a5
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-05 (Fri, 05 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  fix: critical count and report not matching



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From noreply at github.com  Fri Sep  5 14:28:33 2025
From: noreply at github.com (aaron-auc)
Date: Fri, 05 Sep 2025 13:28:33 -0700
Subject: [us-commits] [ehb54/ultrascan3] 1cd8b7: fix: critical count and
 report not matching
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/1ee227-1cd8b7@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 1cd8b72876bb06e8a3ab78365aba21db716e9e9a
      https://github.com/ehb54/ultrascan3/commit/1cd8b72876bb06e8a3ab78365aba21db716e9e9a
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-05 (Fri, 05 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  fix: critical count and report not matching



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From noreply at github.com  Fri Sep  5 15:12:58 2025
From: noreply at github.com (aaron-auc)
Date: Fri, 05 Sep 2025 14:12:58 -0700
Subject: [us-commits] [ehb54/ultrascan3] 282034: fix: critical count and
 report not matching - debu...
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/1cd8b7-282034@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 282034725374b69aebdaffe8b45f7f9d139f4f86
      https://github.com/ehb54/ultrascan3/commit/282034725374b69aebdaffe8b45f7f9d139f4f86
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-05 (Fri, 05 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  fix: critical count and report not matching - debugging



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From noreply at github.com  Fri Sep  5 15:16:47 2025
From: noreply at github.com (aaron-auc)
Date: Fri, 05 Sep 2025 14:16:47 -0700
Subject: [us-commits] [ehb54/ultrascan3] bef16d: fix: critical count and
 report not matching - debu...
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/282034-bef16d@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: bef16df9fe897c1b9c5533b0e1dbf0380fe06cb7
      https://github.com/ehb54/ultrascan3/commit/bef16df9fe897c1b9c5533b0e1dbf0380fe06cb7
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-05 (Fri, 05 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  fix: critical count and report not matching - debugging



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From noreply at github.com  Fri Sep  5 15:53:53 2025
From: noreply at github.com (aaron-auc)
Date: Fri, 05 Sep 2025 14:53:53 -0700
Subject: [us-commits] [ehb54/ultrascan3] babadb: fix: critical count and
 report not matching - debu...
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/bef16d-babadb@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: babadb09d4235a957302b5c1d768a336ec133b27
      https://github.com/ehb54/ultrascan3/commit/babadb09d4235a957302b5c1d768a336ec133b27
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-05 (Fri, 05 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  fix: critical count and report not matching - debugging



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From noreply at github.com  Fri Sep  5 17:08:03 2025
From: noreply at github.com (aaron-auc)
Date: Fri, 05 Sep 2025 16:08:03 -0700
Subject: [us-commits] [ehb54/ultrascan3] a7f1a5: fix: critical count and
 report not matching - debu...
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/babadb-a7f1a5@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: a7f1a50e1b60e429edd9a8f6fd5ba1c2464e529a
      https://github.com/ehb54/ultrascan3/commit/a7f1a50e1b60e429edd9a8f6fd5ba1c2464e529a
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-05 (Fri, 05 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  fix: critical count and report not matching - debugging



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From noreply at github.com  Fri Sep  5 18:48:40 2025
From: noreply at github.com (aaron-auc)
Date: Fri, 05 Sep 2025 17:48:40 -0700
Subject: [us-commits] [ehb54/ultrascan3] 73f4b0: fix: critical count and
 report not matching - debu...
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/a7f1a5-73f4b0@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 73f4b0bb4ceec78edd9a81cf8243cc66dda50bf0
      https://github.com/ehb54/ultrascan3/commit/73f4b0bb4ceec78edd9a81cf8243cc66dda50bf0
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-05 (Fri, 05 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  fix: critical count and report not matching - debugging



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From noreply at github.com  Fri Sep  5 18:56:35 2025
From: noreply at github.com (aaron-auc)
Date: Fri, 05 Sep 2025 17:56:35 -0700
Subject: [us-commits] [ehb54/ultrascan3] 83ca73: fix: critical count and
 report not matching - debu...
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/73f4b0-83ca73@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 83ca731548b3c84ac1c90c7a24c79db551a34fbb
      https://github.com/ehb54/ultrascan3/commit/83ca731548b3c84ac1c90c7a24c79db551a34fbb
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-05 (Fri, 05 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  fix: critical count and report not matching - debugging



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From noreply at github.com  Fri Sep  5 19:58:29 2025
From: noreply at github.com (aaron-auc)
Date: Fri, 05 Sep 2025 18:58:29 -0700
Subject: [us-commits] [ehb54/ultrascan3] af9a38: fix: critical count and
 report not matching - debu...
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/83ca73-af9a38@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: af9a3890e0f7dc39992b4f6fa35002ebd2714f36
      https://github.com/ehb54/ultrascan3/commit/af9a3890e0f7dc39992b4f6fa35002ebd2714f36
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-05 (Fri, 05 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  fix: critical count and report not matching - debugging



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From noreply at github.com  Fri Sep  5 20:05:50 2025
From: noreply at github.com (aaron-auc)
Date: Fri, 05 Sep 2025 19:05:50 -0700
Subject: [us-commits] [ehb54/ultrascan3] 37c10e: fix: critical count and
 report not matching - debu...
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/af9a38-37c10e@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 37c10e14f8c331f683c2b298caa9b7335628bc75
      https://github.com/ehb54/ultrascan3/commit/37c10e14f8c331f683c2b298caa9b7335628bc75
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-05 (Fri, 05 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  fix: critical count and report not matching - debugging



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From noreply at github.com  Sat Sep  6 11:30:10 2025
From: noreply at github.com (aaron-auc)
Date: Sat, 06 Sep 2025 10:30:10 -0700
Subject: [us-commits] [ehb54/ultrascan3] 01c3ac: fix: critical analysis only
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/37c10e-01c3ac@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 01c3ac68c81ec557ae6e114aff1d19a63e202637
      https://github.com/ehb54/ultrascan3/commit/01c3ac68c81ec557ae6e114aff1d19a63e202637
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-06 (Sat, 06 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  fix: critical analysis only



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From noreply at github.com  Sat Sep  6 11:49:45 2025
From: noreply at github.com (aaron-auc)
Date: Sat, 06 Sep 2025 10:49:45 -0700
Subject: [us-commits] [ehb54/ultrascan3] 0c497b: fix: critical analysis only
 - debugging
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/22c94e-0c497b@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 0c497b06da3ee7829c48767d9351a66ef28e60c9
      https://github.com/ehb54/ultrascan3/commit/0c497b06da3ee7829c48767d9351a66ef28e60c9
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-06 (Sat, 06 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  fix: critical analysis only - debugging



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From noreply at github.com  Sat Sep  6 11:45:05 2025
From: noreply at github.com (aaron-auc)
Date: Sat, 06 Sep 2025 10:45:05 -0700
Subject: [us-commits] [ehb54/ultrascan3] 22c94e: fix: critical analysis only
 - debugging
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/01c3ac-22c94e@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 22c94e847970d3ccaa062bde9b1e2e877d1f9551
      https://github.com/ehb54/ultrascan3/commit/22c94e847970d3ccaa062bde9b1e2e877d1f9551
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-06 (Sat, 06 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  fix: critical analysis only - debugging



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From noreply at github.com  Sat Sep  6 11:55:24 2025
From: noreply at github.com (aaron-auc)
Date: Sat, 06 Sep 2025 10:55:24 -0700
Subject: [us-commits] [ehb54/ultrascan3] f04888: fix: critical static
 analysis only
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/0c497b-f04888@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: f04888d7116e9c5498dd5a316307e9f4dc238d40
      https://github.com/ehb54/ultrascan3/commit/f04888d7116e9c5498dd5a316307e9f4dc238d40
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-06 (Sat, 06 Sep 2025)

  Changed paths:
    M .github/workflows/static-analysis.yml

  Log Message:
  -----------
  fix: critical static analysis only



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From noreply at github.com  Sat Sep  6 18:45:41 2025
From: noreply at github.com (aaron-auc)
Date: Sat, 06 Sep 2025 17:45:41 -0700
Subject: [us-commits] [ehb54/ultrascan3] d9ed24: mod: address review comments
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/f04888-d9ed24@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: d9ed24af5742fb54910d7c1d9873b57c528b4661
      https://github.com/ehb54/ultrascan3/commit/d9ed24af5742fb54910d7c1d9873b57c528b4661
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-06 (Sat, 06 Sep 2025)

  Changed paths:
    M CMakeLists.txt
    M admin/cmake/FindQwt.cmake
    M gui/CMakeLists.txt
    M programs/us_autoflow_analysis/CMakeLists.txt
    M programs/us_com_project/CMakeLists.txt
    M programs/us_com_project_academic/CMakeLists.txt
    M programs/us_experiment/CMakeLists.txt
    M programs/us_fematch/CMakeLists.txt
    M programs/us_fit_meniscus/CMakeLists.txt
    M programs/us_mwl_species_fit/CMakeLists.txt
    M programs/us_protocol_dev/CMakeLists.txt
    M programs/us_query_rmsd/CMakeLists.txt
    M programs/us_reporter_gmp/CMakeLists.txt
    M qwtplot3d/CMakeLists.txt
    M test/utils/test_us_settings.cpp
    M utils/CMakeLists.txt

  Log Message:
  -----------
  mod: address review comments



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From noreply at github.com  Wed Sep 10 06:39:50 2025
From: noreply at github.com (ehb54)
Date: Wed, 10 Sep 2025 05:39:50 -0700
Subject: [us-commits] [ehb54/us3lims_gridctl]
Message-ID: <ehb54/us3lims_gridctl/push/refs/heads/ehb54-issue-552/000000-ef171b@github.com>

  Branch: refs/heads/ehb54-issue-552
  Home:   https://github.com/ehb54/us3lims_gridctl

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From noreply at github.com  Wed Sep 10 06:40:19 2025
From: noreply at github.com (ehb54)
Date: Wed, 10 Sep 2025 05:40:19 -0700
Subject: [us-commits] [ehb54/us3lims_gridctl] 91ccc2: issue 552 wip
Message-ID: <ehb54/us3lims_gridctl/push/refs/heads/ehb54-issue-552/ef171b-91ccc2@github.com>

  Branch: refs/heads/ehb54-issue-552
  Home:   https://github.com/ehb54/us3lims_gridctl
  Commit: 91ccc26b7f5c3b80f73962f81a2652bcaef7f1bb
      https://github.com/ehb54/us3lims_gridctl/commit/91ccc26b7f5c3b80f73962f81a2652bcaef7f1bb
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-09-10 (Wed, 10 Sep 2025)

  Changed paths:
    A autoflow_util/makeafrequest2DSA-CG.php

  Log Message:
  -----------
  issue 552 wip



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From noreply at github.com  Wed Sep 10 07:28:44 2025
From: noreply at github.com (ehb54)
Date: Wed, 10 Sep 2025 06:28:44 -0700
Subject: [us-commits] [ehb54/us3lims_dbinst]
Message-ID: <ehb54/us3lims_dbinst/push/refs/heads/ehb54-issue-552/000000-82c80d@github.com>

  Branch: refs/heads/ehb54-issue-552
  Home:   https://github.com/ehb54/us3lims_dbinst

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From noreply at github.com  Wed Sep 10 07:30:41 2025
From: noreply at github.com (ehb54)
Date: Wed, 10 Sep 2025 06:30:41 -0700
Subject: [us-commits] [ehb54/us3lims_dbinst] 390629: issue 552 changes to
 2DSA-CG*php to support cli
Message-ID: <ehb54/us3lims_dbinst/push/refs/heads/ehb54-issue-552/82c80d-390629@github.com>

  Branch: refs/heads/ehb54-issue-552
  Home:   https://github.com/ehb54/us3lims_dbinst
  Commit: 3906291798ded03e1891026d3d4f0e9fc633a280
      https://github.com/ehb54/us3lims_dbinst/commit/3906291798ded03e1891026d3d4f0e9fc633a280
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-09-10 (Wed, 10 Sep 2025)

  Changed paths:
    M 2DSA-CG_1.php
    M 2DSA-CG_2.php

  Log Message:
  -----------
  issue 552 changes to 2DSA-CG*php to support cli



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From noreply at github.com  Fri Sep 12 09:54:17 2025
From: noreply at github.com (ehb54)
Date: Fri, 12 Sep 2025 08:54:17 -0700
Subject: [us-commits] [ehb54/us3lims_gridctl] 706d79: submitone.php updates
 - wip
Message-ID: <ehb54/us3lims_gridctl/push/refs/heads/ehb54-issue-552/91ccc2-706d79@github.com>

  Branch: refs/heads/ehb54-issue-552
  Home:   https://github.com/ehb54/us3lims_gridctl
  Commit: 706d79f5372a688128e949eb61037a8915069eba
      https://github.com/ehb54/us3lims_gridctl/commit/706d79f5372a688128e949eb61037a8915069eba
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-09-12 (Fri, 12 Sep 2025)

  Changed paths:
    M autoflow_util/makeafrequest2DSA-CG.php
    M submitone.php

  Log Message:
  -----------
  submitone.php updates - wip



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From noreply at github.com  Fri Sep 12 10:39:42 2025
From: noreply at github.com (alexsav815)
Date: Fri, 12 Sep 2025 09:39:42 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue553/000000-f25403@github.com>

  Branch: refs/heads/alexey-dev-issue553
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Fri Sep 12 11:15:42 2025
From: noreply at github.com (alexsav815)
Date: Fri, 12 Sep 2025 10:15:42 -0700
Subject: [us-commits] [ehb54/ultrascan3] 52d2e1: GMP | 1. EXP.: 8.Aprofile
 -- [Add model ID to fram...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue553/f25403-52d2e1@github.com>

  Branch: refs/heads/alexey-dev-issue553
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 52d2e12f19167416a58de29b71876a11edd2caf6
      https://github.com/ehb54/ultrascan3/commit/52d2e12f19167416a58de29b71876a11edd2caf6
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-12 (Fri, 12 Sep 2025)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M utils/us_ana_profile.cpp
    M utils/us_ana_profile.h

  Log Message:
  -----------
  GMP | 1. EXP.: 8.Aprofile -- [Add model ID to framework]custom grid implementation...



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From noreply at github.com  Fri Sep 12 11:23:07 2025
From: noreply at github.com (alexsav815)
Date: Fri, 12 Sep 2025 10:23:07 -0700
Subject: [us-commits] [ehb54/ultrascan3] 5c1814: [1]GMP | 1. EXP.:
 8.Aprofile -- [Add model ID to f...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue553/52d2e1-5c1814@github.com>

  Branch: refs/heads/alexey-dev-issue553
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 5c1814ae911784afd312e835594b931008d8bed4
      https://github.com/ehb54/ultrascan3/commit/5c1814ae911784afd312e835594b931008d8bed4
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-12 (Fri, 12 Sep 2025)

  Changed paths:
    M utils/us_ana_profile.cpp

  Log Message:
  -----------
  [1]GMP | 1. EXP.: 8.Aprofile -- [Add model ID to framework]custom grid implementation...



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From noreply at github.com  Sat Sep 13 10:13:38 2025
From: noreply at github.com (ehb54)
Date: Sat, 13 Sep 2025 09:13:38 -0700
Subject: [us-commits] [ehb54/us3lims_dbinst] faf6ac: include -> include_once
 for cli
Message-ID: <ehb54/us3lims_dbinst/push/refs/heads/ehb54-issue-552/390629-faf6ac@github.com>

  Branch: refs/heads/ehb54-issue-552
  Home:   https://github.com/ehb54/us3lims_dbinst
  Commit: faf6acd22a7f12f866586657161be116ba2f6042
      https://github.com/ehb54/us3lims_dbinst/commit/faf6acd22a7f12f866586657161be116ba2f6042
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-09-13 (Sat, 13 Sep 2025)

  Changed paths:
    M 2DSA-CG_1.php
    M 2DSA-CG_2.php

  Log Message:
  -----------
  include -> include_once for cli



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From noreply at github.com  Sun Sep 14 10:10:41 2025
From: noreply at github.com (ehb54)
Date: Sun, 14 Sep 2025 09:10:41 -0700
Subject: [us-commits] [ehb54/us3lims_gridctl] 65a14e: add uniform_grid
 option for 2DSA-CG
Message-ID: <ehb54/us3lims_gridctl/push/refs/heads/ehb54-issue-552/706d79-65a14e@github.com>

  Branch: refs/heads/ehb54-issue-552
  Home:   https://github.com/ehb54/us3lims_gridctl
  Commit: 65a14e693b4ed937451461efa5d302e37ebe9948
      https://github.com/ehb54/us3lims_gridctl/commit/65a14e693b4ed937451461efa5d302e37ebe9948
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-09-14 (Sun, 14 Sep 2025)

  Changed paths:
    M submitone.php

  Log Message:
  -----------
  add uniform_grid option for 2DSA-CG



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From noreply at github.com  Sun Sep 14 11:05:36 2025
From: noreply at github.com (alexsav815)
Date: Sun, 14 Sep 2025 10:05:36 -0700
Subject: [us-commits] [ehb54/ultrascan3] 4e5d8b: [2]GMP | 1. EXP.:
 8.Aprofile -- [Add model ID to f...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue553/5c1814-4e5d8b@github.com>

  Branch: refs/heads/alexey-dev-issue553
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 4e5d8b4cc07c2a5c5065886cf61e61c76fafffad
      https://github.com/ehb54/ultrascan3/commit/4e5d8b4cc07c2a5c5065886cf61e61c76fafffad
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-14 (Sun, 14 Sep 2025)

  Changed paths:
    M utils/us_ana_profile.cpp

  Log Message:
  -----------
  [2]GMP | 1. EXP.: 8.Aprofile -- [Add model ID to framework]custom grid implementation...ush



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From noreply at github.com  Mon Sep 15 10:22:16 2025
From: noreply at github.com (alexsav815)
Date: Mon, 15 Sep 2025 09:22:16 -0700
Subject: [us-commits] [ehb54/ultrascan3] 747e42: GMP | 5. ANALYSIS -- fix
 for false 'no -FM data' m...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue553/4e5d8b-747e42@github.com>

  Branch: refs/heads/alexey-dev-issue553
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 747e42f7732dc906533cbd0cd954e81e3e565d98
      https://github.com/ehb54/ultrascan3/commit/747e42f7732dc906533cbd0cd954e81e3e565d98
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.cpp

  Log Message:
  -----------
  GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...



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From noreply at github.com  Mon Sep 15 13:13:55 2025
From: noreply at github.com (alexsav815)
Date: Mon, 15 Sep 2025 12:13:55 -0700
Subject: [us-commits] [ehb54/ultrascan3] 0337b9: [test1]GMP | 5. ANALYSIS --
 fix for false 'no -FM ...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue553/747e42-0337b9@github.com>

  Branch: refs/heads/alexey-dev-issue553
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 0337b97ebfe25072971b60c29b4a2d390667da17
      https://github.com/ehb54/ultrascan3/commit/0337b97ebfe25072971b60c29b4a2d390667da17
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M programs/us_fit_meniscus/us_fit_meniscus_main.cpp

  Log Message:
  -----------
  [test1]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...



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From noreply at github.com  Mon Sep 15 15:03:53 2025
From: noreply at github.com (alexsav815)
Date: Mon, 15 Sep 2025 14:03:53 -0700
Subject: [us-commits] [ehb54/us3_sql]
Message-ID: <ehb54/us3_sql/push/refs/heads/alexey-dev-for-issue553/000000-9375d5@github.com>

  Branch: refs/heads/alexey-dev-for-issue553
  Home:   https://github.com/ehb54/us3_sql

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From noreply at github.com  Mon Sep 15 15:11:00 2025
From: noreply at github.com (alexsav815)
Date: Mon, 15 Sep 2025 14:11:00 -0700
Subject: [us-commits] [ehb54/ultrascan3] 779878: [test2]GMP | 5. ANALYSIS --
 fix for false 'no -FM ...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue553/0337b9-779878@github.com>

  Branch: refs/heads/alexey-dev-issue553
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 77987890dfd45f62499deda691795b2e88ed4c26
      https://github.com/ehb54/ultrascan3/commit/77987890dfd45f62499deda691795b2e88ed4c26
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M programs/us_fit_meniscus/us_fit_meniscus_main.cpp

  Log Message:
  -----------
  [test2]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...



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From noreply at github.com  Mon Sep 15 15:11:58 2025
From: noreply at github.com (alexsav815)
Date: Mon, 15 Sep 2025 14:11:58 -0700
Subject: [us-commits] [ehb54/us3_sql] 71a561: [SQL for] [test2]GMP | 5.
 ANALYSIS -- fix for fals...
Message-ID: <ehb54/us3_sql/push/refs/heads/alexey-dev-for-issue553/9375d5-71a561@github.com>

  Branch: refs/heads/alexey-dev-for-issue553
  Home:   https://github.com/ehb54/us3_sql
  Commit: 71a561316a869efb3d8a4a212f34d448af5ee5f0
      https://github.com/ehb54/us3_sql/commit/71a561316a869efb3d8a4a212f34d448af5ee5f0
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M us3_model_procs.sql

  Log Message:
  -----------
  [SQL for] [test2]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis......



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From noreply at github.com  Mon Sep 15 16:39:04 2025
From: noreply at github.com (alexsav815)
Date: Mon, 15 Sep 2025 15:39:04 -0700
Subject: [us-commits] [ehb54/ultrascan3] f0d642: [test4]GMP | 5. ANALYSIS --
 fix for false 'no -FM ...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue553/779878-f0d642@github.com>

  Branch: refs/heads/alexey-dev-issue553
  Home:   https://github.com/ehb54/ultrascan3
  Commit: f0d642fb0b9364e641fb3119b5eb5f3d9a70d908
      https://github.com/ehb54/ultrascan3/commit/f0d642fb0b9364e641fb3119b5eb5f3d9a70d908
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.cpp

  Log Message:
  -----------
  [test4]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...



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From noreply at github.com  Mon Sep 15 20:28:53 2025
From: noreply at github.com (alexsav815)
Date: Mon, 15 Sep 2025 19:28:53 -0700
Subject: [us-commits] [ehb54/ultrascan3] cabec7: [test5]GMP | 5. ANALYSIS --
 fix for false 'no -FM ...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue553/f0d642-cabec7@github.com>

  Branch: refs/heads/alexey-dev-issue553
  Home:   https://github.com/ehb54/ultrascan3
  Commit: cabec77d85cef315e34c7a7362b56b19524d3972
      https://github.com/ehb54/ultrascan3/commit/cabec77d85cef315e34c7a7362b56b19524d3972
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [test5]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...



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From noreply at github.com  Mon Sep 15 20:42:31 2025
From: noreply at github.com (alexsav815)
Date: Mon, 15 Sep 2025 19:42:31 -0700
Subject: [us-commits] [ehb54/ultrascan3] ffb3fb: [test6]GMP | 5. ANALYSIS --
 fix for false 'no -FM ...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue553/cabec7-ffb3fb@github.com>

  Branch: refs/heads/alexey-dev-issue553
  Home:   https://github.com/ehb54/ultrascan3
  Commit: ffb3fb9dc2da42d44a60eaefd9a678aea956a204
      https://github.com/ehb54/ultrascan3/commit/ffb3fb9dc2da42d44a60eaefd9a678aea956a204
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M gui/us_model_loader.cpp

  Log Message:
  -----------
  [test6]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...



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From noreply at github.com  Tue Sep 16 06:33:56 2025
From: noreply at github.com (Lukas Dobler)
Date: Tue, 16 Sep 2025 05:33:56 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/bad-timestate/000000-f25403@github.com>

  Branch: refs/heads/lukas/bad-timestate
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Tue Sep 16 10:17:44 2025
From: noreply at github.com (alexsav815)
Date: Tue, 16 Sep 2025 09:17:44 -0700
Subject: [us-commits] [ehb54/ultrascan3] 8373d1: [test77]GMP | 5. ANALYSIS
 -- fix for false 'no -FM...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue553/ffb3fb-8373d1@github.com>

  Branch: refs/heads/alexey-dev-issue553
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 8373d17ba7f453a11426f8935218990b8e317f51
      https://github.com/ehb54/ultrascan3/commit/8373d17ba7f453a11426f8935218990b8e317f51
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [test77]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...



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From noreply at github.com  Tue Sep 16 10:29:45 2025
From: noreply at github.com (Lukas Dobler)
Date: Tue, 16 Sep 2025 09:29:45 -0700
Subject: [us-commits] [ehb54/ultrascan3] d29359: Add function to check
 acceleration rate and first ...
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/bad-timestate/f25403-e7990f@github.com>

  Branch: refs/heads/lukas/bad-timestate
  Home:   https://github.com/ehb54/ultrascan3
  Commit: d29359d571538fdcdba340546c1ace762f2585f7
      https://github.com/ehb54/ultrascan3/commit/d29359d571538fdcdba340546c1ace762f2585f7
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h

  Log Message:
  -----------
  Add function to check acceleration rate and first scan validity

Introduced `check_acceleration()` in `US_AstfemMath` to validate acceleration rates and detect potential issues with first scan timing. Enhanced error reporting for experiments with low acceleration or scans during acceleration phase. Updated header file accordingly.


  Commit: 00b9132e2f4a788b4b056a3277c0b52a4f0adec4
      https://github.com/ehb54/ultrascan3/commit/00b9132e2f4a788b4b056a3277c0b52a4f0adec4
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_2dsa/us_2dsa.cpp

  Log Message:
  -----------
  Refactor speed step validation logic and integrate `check_acceleration()`

Replaced manual speed step validation with the `check_acceleration()` function from `US_AstfemMath`, improving modularity and error detection. Enhanced message box handling for better user feedback on scan timing and acceleration issues.


  Commit: b3b5449d21badd09a6c72964db5f09a1c6ac22ab
      https://github.com/ehb54/ultrascan3/commit/b3b5449d21badd09a6c72964db5f09a1c6ac22ab
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp

  Log Message:
  -----------
  Replace manual acceleration checks with `check_acceleration()` helper

Streamlined acceleration validation using `US_AstfemMath::check_acceleration()` for improved modularity, reduced code redundancy, and enhanced error handling. Updated message box logic to display detailed user feedback when issues are detected.


  Commit: e7990f3902c576ee20053e446ae508e1d193ef29
      https://github.com/ehb54/ultrascan3/commit/e7990f3902c576ee20053e446ae508e1d193ef29
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_convert/us_convert_gui.cpp

  Log Message:
  -----------
  Refactor message box logic and integrate updated `check_acceleration()` validation

Simplified acceleration validation by utilizing `US_AstfemMath::check_acceleration()`. Streamlined message box handling to improve readability and user feedback for experiments with acceleration issues.


Compare: https://github.com/ehb54/ultrascan3/compare/f254035dd92e...e7990f3902c5

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From noreply at github.com  Tue Sep 16 12:54:50 2025
From: noreply at github.com (Lukas Dobler)
Date: Tue, 16 Sep 2025 11:54:50 -0700
Subject: [us-commits] [ehb54/ultrascan3] 31e99c: Remove obsolete low
 acceleration check and associa...
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/bad-timestate/e7990f-009aba@github.com>

  Branch: refs/heads/lukas/bad-timestate
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 31e99caf2928581de4943b1119be73a9436d1447
      https://github.com/ehb54/ultrascan3/commit/31e99caf2928581de4943b1119be73a9436d1447
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  Remove obsolete low acceleration check and associated UI logic

Eliminated redundant low acceleration validation and message box logic from `us_experiment_gui_optima.cpp`, simplifying the code and improving maintainability.


  Commit: 91d63509d1f79d315225eff1b2d7fb5b6115ecc3
      https://github.com/ehb54/ultrascan3/commit/91d63509d1f79d315225eff1b2d7fb5b6115ecc3
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_fematch/us_fematch.cpp

  Log Message:
  -----------
  Replace manual acceleration UI logic with `check_acceleration()` integration

Streamlined acceleration validation by utilizing `US_AstfemMath::check_acceleration()`. Removed redundant manual checks and simplified message box handling for improved user feedback and code maintainability.


  Commit: a460bef08c775745062f6fe891f2893e2002d117
      https://github.com/ehb54/ultrascan3/commit/a460bef08c775745062f6fe891f2893e2002d117
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_mpi_analysis/us_mpi_analysis.cpp

  Log Message:
  -----------
  Replace manual acceleration UI logic with `check_acceleration()` integration

Streamlined acceleration validation by utilizing `US_AstfemMath::check_acceleration()`. Removed redundant manual checks and simplified message box handling for improved user feedback and code maintainability.


  Commit: 009aba4948371da1e6e6f05f46f5a11c092b324c
      https://github.com/ehb54/ultrascan3/commit/009aba4948371da1e6e6f05f46f5a11c092b324c
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  Integrate `check_acceleration()` in `us_reporter_gmp.cpp`

Replaced manual acceleration checks with `US_AstfemMath::check_acceleration()`, streamlining validation and improving error reporting with enhanced message box logic. Removed redundant code for better maintainability.


Compare: https://github.com/ehb54/ultrascan3/compare/e7990f3902c5...009aba494837

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From noreply at github.com  Tue Sep 16 12:55:37 2025
From: noreply at github.com (Lukas Dobler)
Date: Tue, 16 Sep 2025 11:55:37 -0700
Subject: [us-commits] [ehb54/ultrascan3] bee67a: Update
 utils/us_astfem_math.cpp
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/bad-timestate/009aba-bee67a@github.com>

  Branch: refs/heads/lukas/bad-timestate
  Home:   https://github.com/ehb54/ultrascan3
  Commit: bee67ad94ebbc7c9821dc0aad18e6bce737b4568
      https://github.com/ehb54/ultrascan3/commit/bee67ad94ebbc7c9821dc0aad18e6bce737b4568
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Update utils/us_astfem_math.cpp

Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com>



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From noreply at github.com  Tue Sep 16 12:55:48 2025
From: noreply at github.com (Lukas Dobler)
Date: Tue, 16 Sep 2025 11:55:48 -0700
Subject: [us-commits] [ehb54/ultrascan3] 227d32: Update
 utils/us_astfem_math.cpp
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/bad-timestate/bee67a-227d32@github.com>

  Branch: refs/heads/lukas/bad-timestate
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 227d32eb57b85946a3d39e4643719738eeddabb5
      https://github.com/ehb54/ultrascan3/commit/227d32eb57b85946a3d39e4643719738eeddabb5
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Update utils/us_astfem_math.cpp

Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com>



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From noreply at github.com  Tue Sep 16 13:14:35 2025
From: noreply at github.com (Lukas Dobler)
Date: Tue, 16 Sep 2025 12:14:35 -0700
Subject: [us-commits] [ehb54/ultrascan3] fa4453: Integrate
 `check_acceleration()` in `us_vhw_enhanc...
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/bad-timestate/227d32-3b4ade@github.com>

  Branch: refs/heads/lukas/bad-timestate
  Home:   https://github.com/ehb54/ultrascan3
  Commit: fa44532656ec9a8863fe76d5878356f412f827fb
      https://github.com/ehb54/ultrascan3/commit/fa44532656ec9a8863fe76d5878356f412f827fb
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp

  Log Message:
  -----------
  Integrate `check_acceleration()` in `us_vhw_enhanced.cpp`

Added validation for acceleration profiles using `US_AstfemMath::check_acceleration()`. Enhanced message box logic for user feedback and streamlined error handling for scan data issues.


  Commit: 3b4ade0ff450252975099029f53fae26589346a6
      https://github.com/ehb54/ultrascan3/commit/3b4ade0ff450252975099029f53fae26589346a6
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M gui/us_analysis_base2.cpp

  Log Message:
  -----------
  Integrate `check_acceleration()` in `us_analysis_base2.cpp` in order to add it to us_second_moment, us_dcdt, us_pcsa

Added acceleration validation leveraging `US_AstfemMath::check_acceleration()`. Enhanced message box logic for user feedback and streamlined error handling for scan data issues.


Compare: https://github.com/ehb54/ultrascan3/compare/227d32eb57b8...3b4ade0ff450

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From noreply at github.com  Tue Sep 16 14:11:12 2025
From: noreply at github.com (alexsav815)
Date: Tue, 16 Sep 2025 13:11:12 -0700
Subject: [us-commits] [ehb54/ultrascan3] 9fb462: [debug]GMP | 6. REPORT: CG
 -- ...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue553/8373d1-9fb462@github.com>

  Branch: refs/heads/alexey-dev-issue553
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 9fb462a87d5cfef990e583e0aa8dda091841052b
      https://github.com/ehb54/ultrascan3/commit/9fb462a87d5cfef990e583e0aa8dda091841052b
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_fematch/us_resplot_fem.cpp

  Log Message:
  -----------
  [debug]GMP | 6. REPORT: CG -- ...



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From noreply at github.com  Tue Sep 16 14:40:38 2025
From: noreply at github.com (alexsav815)
Date: Tue, 16 Sep 2025 13:40:38 -0700
Subject: [us-commits] [ehb54/ultrascan3] 42982a: [debug1]GMP | 6. REPORT: CG
 -- ...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue553/9fb462-42982a@github.com>

  Branch: refs/heads/alexey-dev-issue553
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 42982afb88ddce0d00ece507d399d59735905d72
      https://github.com/ehb54/ultrascan3/commit/42982afb88ddce0d00ece507d399d59735905d72
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug1]GMP | 6. REPORT: CG -- ...



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From noreply at github.com  Tue Sep 16 14:45:06 2025
From: noreply at github.com (alexsav815)
Date: Tue, 16 Sep 2025 13:45:06 -0700
Subject: [us-commits] [ehb54/ultrascan3] 493798: [debug2]GMP | 6. REPORT: CG
 -- ...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue553/42982a-493798@github.com>

  Branch: refs/heads/alexey-dev-issue553
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 493798b230e227ab68985ca50882c28058efd160
      https://github.com/ehb54/ultrascan3/commit/493798b230e227ab68985ca50882c28058efd160
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug2]GMP | 6. REPORT: CG -- ...



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From noreply at github.com  Tue Sep 16 14:51:20 2025
From: noreply at github.com (alexsav815)
Date: Tue, 16 Sep 2025 13:51:20 -0700
Subject: [us-commits] [ehb54/ultrascan3] a468cc: [debug3]GMP | 6. REPORT: CG
 -- ...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue553/493798-a468cc@github.com>

  Branch: refs/heads/alexey-dev-issue553
  Home:   https://github.com/ehb54/ultrascan3
  Commit: a468cc16f534c3769ca2b90b209848d226d596fc
      https://github.com/ehb54/ultrascan3/commit/a468cc16f534c3769ca2b90b209848d226d596fc
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug3]GMP | 6. REPORT: CG -- ...



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From noreply at github.com  Tue Sep 16 14:59:52 2025
From: noreply at github.com (alexsav815)
Date: Tue, 16 Sep 2025 13:59:52 -0700
Subject: [us-commits] [ehb54/ultrascan3] 358516: [debug4]GMP | 6. REPORT: CG
 -- ...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue553/a468cc-358516@github.com>

  Branch: refs/heads/alexey-dev-issue553
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 35851638d1fc647e0bd2dd3861e329898ac2fec1
      https://github.com/ehb54/ultrascan3/commit/35851638d1fc647e0bd2dd3861e329898ac2fec1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug4]GMP | 6. REPORT: CG -- ...



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From noreply at github.com  Tue Sep 16 15:04:12 2025
From: noreply at github.com (alexsav815)
Date: Tue, 16 Sep 2025 14:04:12 -0700
Subject: [us-commits] [ehb54/ultrascan3] 8de77f: [debug5]GMP | 6. REPORT: CG
 -- ...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue553/358516-8de77f@github.com>

  Branch: refs/heads/alexey-dev-issue553
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 8de77f30a55f3d955960b24d9fc654f85a643da1
      https://github.com/ehb54/ultrascan3/commit/8de77f30a55f3d955960b24d9fc654f85a643da1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug5]GMP | 6. REPORT: CG -- ...



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From noreply at github.com  Tue Sep 16 15:08:20 2025
From: noreply at github.com (alexsav815)
Date: Tue, 16 Sep 2025 14:08:20 -0700
Subject: [us-commits] [ehb54/ultrascan3] 116f06: [debug5]GMP | 6. REPORT: CG
 -- ...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue553/8de77f-116f06@github.com>

  Branch: refs/heads/alexey-dev-issue553
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 116f06f0e3cb97e592455a896ea074987b1d687d
      https://github.com/ehb54/ultrascan3/commit/116f06f0e3cb97e592455a896ea074987b1d687d
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug5]GMP | 6. REPORT: CG -- ...



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From noreply at github.com  Tue Sep 16 15:14:12 2025
From: noreply at github.com (alexsav815)
Date: Tue, 16 Sep 2025 14:14:12 -0700
Subject: [us-commits] [ehb54/ultrascan3] ada9fc: [debug7]GMP | 6. REPORT: CG
 -- ...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue553/116f06-ada9fc@github.com>

  Branch: refs/heads/alexey-dev-issue553
  Home:   https://github.com/ehb54/ultrascan3
  Commit: ada9fc194b6107aa9234582f328928f990f49ab8
      https://github.com/ehb54/ultrascan3/commit/ada9fc194b6107aa9234582f328928f990f49ab8
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug7]GMP | 6. REPORT: CG -- ...



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From noreply at github.com  Thu Sep 18 07:20:27 2025
From: noreply at github.com (Lukas Dobler)
Date: Thu, 18 Sep 2025 06:20:27 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/debug_text_docs/000000-f25403@github.com>

  Branch: refs/heads/lukas/debug_text_docs
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Thu Sep 18 07:55:25 2025
From: noreply at github.com (Lukas Dobler)
Date: Thu, 18 Sep 2025 06:55:25 -0700
Subject: [us-commits] [ehb54/ultrascan3] 32bb4b: Enhance advanced_config
 documentation with new flags
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/debug_text_docs/f25403-32bb4b@github.com>

  Branch: refs/heads/lukas/debug_text_docs
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 32bb4b7a5dc2070311763e159ad64dab3cc648d4
      https://github.com/ehb54/ultrascan3/commit/32bb4b7a5dc2070311763e159ad64dab3cc648d4
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M doc/manual/advanced_config.body

  Log Message:
  -----------
  Enhance advanced_config documentation with new flags

Added detailed descriptions for various configuration flags related to debugging and speed settings.



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From noreply at github.com  Thu Sep 18 08:09:55 2025
From: noreply at github.com (Lukas Dobler)
Date: Thu, 18 Sep 2025 07:09:55 -0700
Subject: [us-commits] [ehb54/ultrascan3] b52f75: Update wording
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/debug_text_docs/32bb4b-b52f75@github.com>

  Branch: refs/heads/lukas/debug_text_docs
  Home:   https://github.com/ehb54/ultrascan3
  Commit: b52f75b2a6792fda0bab5a3eb02250629eed0b4a
      https://github.com/ehb54/ultrascan3/commit/b52f75b2a6792fda0bab5a3eb02250629eed0b4a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M doc/manual/advanced_config.body

  Log Message:
  -----------
  Update wording

Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com>



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From noreply at github.com  Thu Sep 18 08:13:11 2025
From: noreply at github.com (Lukas Dobler)
Date: Thu, 18 Sep 2025 07:13:11 -0700
Subject: [us-commits] [ehb54/ultrascan3] 62d4ea: Update hsclogo description
 in advanced_config
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/debug_text_docs/b52f75-62d4ea@github.com>

  Branch: refs/heads/lukas/debug_text_docs
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 62d4ea94709d6f723457f2bc6436f79c5486ddae
      https://github.com/ehb54/ultrascan3/commit/62d4ea94709d6f723457f2bc6436f79c5486ddae
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M doc/manual/advanced_config.body

  Log Message:
  -----------
  Update hsclogo description in advanced_config



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From noreply at github.com  Thu Sep 18 08:37:22 2025
From: noreply at github.com (Lukas Dobler)
Date: Thu, 18 Sep 2025 07:37:22 -0700
Subject: [us-commits] [ehb54/ultrascan3] 803cac: Integrate
 `check_acceleration()` in `us_fematch.cpp`
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/bad-timestate/3b4ade-803cac@github.com>

  Branch: refs/heads/lukas/bad-timestate
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 803cac4e0551cf55251878109066602030536089
      https://github.com/ehb54/ultrascan3/commit/803cac4e0551cf55251878109066602030536089
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M programs/us_fematch/us_fematch.cpp

  Log Message:
  -----------
  Integrate `check_acceleration()` in `us_fematch.cpp`

Replaced manual acceleration validation with `US_AstfemMath::check_acceleration()`. Improved error handling and message box logic to provide better user feedback for scan data issues.



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From noreply at github.com  Thu Sep 18 08:56:30 2025
From: noreply at github.com (Lukas Dobler)
Date: Thu, 18 Sep 2025 07:56:30 -0700
Subject: [us-commits] [ehb54/ultrascan3] 6147e9: Clarify
 `check_acceleration()` documentation for r...
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/bad-timestate/803cac-d976a8@github.com>

  Branch: refs/heads/lukas/bad-timestate
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 6147e952e75e949c7809a98a21beb2107f87e395
      https://github.com/ehb54/ultrascan3/commit/6147e952e75e949c7809a98a21beb2107f87e395
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.h

  Log Message:
  -----------
  Clarify `check_acceleration()` documentation for return format and behavior


  Commit: d976a8685de0adc6d272b35cec81016a34e4a38e
      https://github.com/ehb54/ultrascan3/commit/d976a8685de0adc6d272b35cec81016a34e4a38e
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Refactor `check_acceleration()` logic for improved readability and robustness

Simplified variable naming, added guards for edge cases, and clarified acceleration rate and time checks. Enhanced error messages to provide more detailed user feedback.


Compare: https://github.com/ehb54/ultrascan3/compare/803cac4e0551...d976a8685de0

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From noreply at github.com  Thu Sep 18 09:06:24 2025
From: noreply at github.com (Lukas Dobler)
Date: Thu, 18 Sep 2025 08:06:24 -0700
Subject: [us-commits] [ehb54/ultrascan3] 6c6ba4: Fix incorrect dereference
 of `edata` in `check_acc...
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/bad-timestate/d976a8-6c6ba4@github.com>

  Branch: refs/heads/lukas/bad-timestate
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 6c6ba45b05dacb1c10cf803c959c2b9b4bdbe14c
      https://github.com/ehb54/ultrascan3/commit/6c6ba45b05dacb1c10cf803c959c2b9b4bdbe14c
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp

  Log Message:
  -----------
  Fix incorrect dereference of `edata` in `check_acceleration()` call



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From noreply at github.com  Thu Sep 18 09:15:04 2025
From: noreply at github.com (Lukas Dobler)
Date: Thu, 18 Sep 2025 08:15:04 -0700
Subject: [us-commits] [ehb54/ultrascan3] 103683: Fix incorrect dereference
 of `edata` in `check_acc...
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/bad-timestate/6c6ba4-103683@github.com>

  Branch: refs/heads/lukas/bad-timestate
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 103683b0b42e6d3ee23a86bb3749b3cc0aa08e11
      https://github.com/ehb54/ultrascan3/commit/103683b0b42e6d3ee23a86bb3749b3cc0aa08e11
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  Fix incorrect dereference of `edata` in `check_acceleration()` call within `us_reporter_gmp.cpp`



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From noreply at github.com  Thu Sep 18 09:31:29 2025
From: noreply at github.com (Borries Demeler)
Date: Thu, 18 Sep 2025 08:31:29 -0700
Subject: [us-commits] [ehb54/ultrascan3] 32bb4b: Enhance advanced_config
 documentation with new flags
Message-ID: <ehb54/ultrascan3/push/refs/heads/master/f25403-347ef4@github.com>

  Branch: refs/heads/master
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 32bb4b7a5dc2070311763e159ad64dab3cc648d4
      https://github.com/ehb54/ultrascan3/commit/32bb4b7a5dc2070311763e159ad64dab3cc648d4
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M doc/manual/advanced_config.body

  Log Message:
  -----------
  Enhance advanced_config documentation with new flags

Added detailed descriptions for various configuration flags related to debugging and speed settings.


  Commit: b52f75b2a6792fda0bab5a3eb02250629eed0b4a
      https://github.com/ehb54/ultrascan3/commit/b52f75b2a6792fda0bab5a3eb02250629eed0b4a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M doc/manual/advanced_config.body

  Log Message:
  -----------
  Update wording

Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com>


  Commit: 62d4ea94709d6f723457f2bc6436f79c5486ddae
      https://github.com/ehb54/ultrascan3/commit/62d4ea94709d6f723457f2bc6436f79c5486ddae
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M doc/manual/advanced_config.body

  Log Message:
  -----------
  Update hsclogo description in advanced_config


  Commit: 347ef44a538b0dfd5dd64c49aa7d9baecf6f1c03
      https://github.com/ehb54/ultrascan3/commit/347ef44a538b0dfd5dd64c49aa7d9baecf6f1c03
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M doc/manual/advanced_config.body

  Log Message:
  -----------
  Merge pull request #263 from ehb54/lukas/debug_text_docs

Document advanced settings debug text values/flags


Compare: https://github.com/ehb54/ultrascan3/compare/f254035dd92e...347ef44a538b

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From noreply at github.com  Thu Sep 18 09:31:36 2025
From: noreply at github.com (Borries Demeler)
Date: Thu, 18 Sep 2025 08:31:36 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/debug_text_docs/62d4ea-000000@github.com>

  Branch: refs/heads/lukas/debug_text_docs
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Thu Sep 18 15:35:49 2025
From: noreply at github.com (alexsav815)
Date: Thu, 18 Sep 2025 14:35:49 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/000000-347ef4@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Fri Sep 19 07:31:10 2025
From: noreply at github.com (Lukas Dobler)
Date: Fri, 19 Sep 2025 06:31:10 -0700
Subject: [us-commits] [ehb54/ultrascan3] 9d51aa: Refactor speed profile and
 time state handling in ...
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/bad-timestate/103683-b21a55@github.com>

  Branch: refs/heads/lukas/bad-timestate
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 9d51aa93fbdb6f1a84076e3ddd128210f701d29d
      https://github.com/ehb54/ultrascan3/commit/9d51aa93fbdb6f1a84076e3ddd128210f701d29d
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-19 (Fri, 19 Sep 2025)

  Changed paths:
    M gui/us_analysis_base2.cpp

  Log Message:
  -----------
  Refactor speed profile and time state handling in `us_analysis_base2.cpp`

Refactored speed profile processing to improve clarity and maintainability. Added enhanced logic to handle time state files and initialization of simulation parameters. Simplified acceleration checks using `US_AstfemMath::check_acceleration()`.


  Commit: 1f7336dfecb15d81c71c88e6922196f0137c6431
      https://github.com/ehb54/ultrascan3/commit/1f7336dfecb15d81c71c88e6922196f0137c6431
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-19 (Fri, 19 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Adjust `kT1Factor` initialization and format specifiers in error messages

Revised `kT1Factor` to use explicit calculation for enhanced clarity. Updated float formatting in error messages from 'g' to 'f' for consistent precision in user feedback.


  Commit: b29fc424db0d4aa7e5e60d830be2fbadb73666e1
      https://github.com/ehb54/ultrascan3/commit/b29fc424db0d4aa7e5e60d830be2fbadb73666e1
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-19 (Fri, 19 Sep 2025)

  Changed paths:
    M programs/us_2dsa/us_2dsa.cpp

  Log Message:
  -----------
  Remove manual `check_acceleration()` validation in `us_2dsa.cpp`

Eliminated redundant acceleration validation logic and message box handling. Streamlined by removing unused `US_AstfemMath::check_acceleration()` integration.


  Commit: 626668c35b1cdd774c6ba744a7cd473feb548602
      https://github.com/ehb54/ultrascan3/commit/626668c35b1cdd774c6ba744a7cd473feb548602
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-19 (Fri, 19 Sep 2025)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_fematch/us_fematch.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  Simplify `check_results` bounds checks in message box handling across programs


  Commit: b21a559ee9e33fed395a785dbaa8f14fe58e9831
      https://github.com/ehb54/ultrascan3/commit/b21a559ee9e33fed395a785dbaa8f14fe58e9831
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-19 (Fri, 19 Sep 2025)

  Changed paths:
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp

  Log Message:
  -----------
  Remove unused `check_acceleration` logic and disable `update(0)` call in `us_vhw_enhanced.cpp` to prevent unnecessary update cycle


Compare: https://github.com/ehb54/ultrascan3/compare/103683b0b42e...b21a559ee9e3

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From noreply at github.com  Sun Sep 21 11:03:34 2025
From: noreply at github.com (ehb54)
Date: Sun, 21 Sep 2025 10:03:34 -0700
Subject: [us-commits] [ehb54/ultrascan3] 4efac0: somo saxs hplc experimental
 cyclic fit, now double...
Message-ID: <ehb54/ultrascan3/push/refs/heads/somo-dev/43ea17-4efac0@github.com>

  Branch: refs/heads/somo-dev
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 4efac04b4d2c806e678fc4ce2e2889517a24a756
      https://github.com/ehb54/ultrascan3/commit/4efac04b4d2c806e678fc4ce2e2889517a24a756
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-09-21 (Sun, 21 Sep 2025)

  Changed paths:
    M us_somo/develop/src/us_hydrodyn_saxs_hplc_makeiq.cpp

  Log Message:
  -----------
  somo saxs hplc experimental cyclic fit, now double cyclic and LM epsilon set earlier (prior to ->fit() call)



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From noreply at github.com  Sun Sep 21 19:50:00 2025
From: noreply at github.com (alexsav815)
Date: Sun, 21 Sep 2025 18:50:00 -0700
Subject: [us-commits] [ehb54/ultrascan3] a4fcd0: GMP | 1. EXP.: AProfile &&
 4. EDIT -- init. steps ...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/347ef4-a4fcd0@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: a4fcd0c5999879b9af70342cbf2a4d40b9d2b803
      https://github.com/ehb54/ultrascan3/commit/a4fcd0c5999879b9af70342cbf2a4d40b9d2b803
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-21 (Sun, 21 Sep 2025)

  Changed paths:
    M gui/us_scan_excl_gui.cpp
    M gui/us_scan_excl_gui.h
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M utils/us_ana_profile.cpp
    M utils/us_ana_profile.h

  Log Message:
  -----------
  GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...



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From noreply at github.com  Mon Sep 22 06:49:29 2025
From: noreply at github.com (Lukas Dobler)
Date: Mon, 22 Sep 2025 05:49:29 -0700
Subject: [us-commits] [ehb54/ultrascan3] e49834: Add `calc_omega2t`
 functionality to `US_AstfemMath...
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/bad-timestate/b21a55-046484@github.com>

  Branch: refs/heads/lukas/bad-timestate
  Home:   https://github.com/ehb54/ultrascan3
  Commit: e49834c3a05a6ffbc730f24be564d3c319a06d2a
      https://github.com/ehb54/ultrascan3/commit/e49834c3a05a6ffbc730f24be564d3c319a06d2a
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h

  Log Message:
  -----------
  Add `calc_omega2t` functionality to `US_AstfemMath` for omega2t calculations

Introduced a new method `calc_omega2t` in `US_AstfemMath` to calculate omega2t values based on speed profiles, acceleration rates, and time parameters. Enhanced flexibility for processing speed step data.


  Commit: 046484c8433d54042b223de7aebd2b793424b6a9
      https://github.com/ehb54/ultrascan3/commit/046484c8433d54042b223de7aebd2b793424b6a9
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M programs/us_astfem_sim/us_astfem_sim.cpp

  Log Message:
  -----------
  Refactor speed step simulation logic in `us_astfem_sim.cpp`

Streamlined speed profile processing by removing redundant legacy logic and incorporating `calc_omega2t` for precise omega2t and time grid calculations. Enhanced clarity and maintainability of simulation loop.


Compare: https://github.com/ehb54/ultrascan3/compare/b21a559ee9e3...046484c8433d

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From noreply at github.com  Mon Sep 22 12:08:10 2025
From: noreply at github.com (alexsav815)
Date: Mon, 22 Sep 2025 11:08:10 -0700
Subject: [us-commits] [ehb54/ultrascan3] 1246e6: [1a]GMP | 1. EXP.: AProfile
 && 4. EDIT -- init. st...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/a4fcd0-1246e6@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 1246e6e3724e8a382585cc65e0208d3008bfbeeb
      https://github.com/ehb54/ultrascan3/commit/1246e6e3724e8a382585cc65e0208d3008bfbeeb
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  [1a]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...



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From noreply at github.com  Mon Sep 22 12:20:10 2025
From: noreply at github.com (alexsav815)
Date: Mon, 22 Sep 2025 11:20:10 -0700
Subject: [us-commits] [ehb54/ultrascan3] 5e6c7f: [2]GMP | 1. EXP.: AProfile
 && 4. EDIT -- init. ste...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/1246e6-5e6c7f@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 5e6c7f858d8e6163099c500c970c02e54801243b
      https://github.com/ehb54/ultrascan3/commit/5e6c7f858d8e6163099c500c970c02e54801243b
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [2]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...



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From noreply at github.com  Mon Sep 22 12:42:23 2025
From: noreply at github.com (alexsav815)
Date: Mon, 22 Sep 2025 11:42:23 -0700
Subject: [us-commits] [ehb54/ultrascan3] 5c98f8: [3]GMP | 1. EXP.: AProfile
 && 4. EDIT -- init. ste...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/5e6c7f-5c98f8@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 5c98f81ac04ec7e465bdc36d6c858c27e3f146a1
      https://github.com/ehb54/ultrascan3/commit/5c98f81ac04ec7e465bdc36d6c858c27e3f146a1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M gui/us_scan_excl_gui.cpp
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [3]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...



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From noreply at github.com  Mon Sep 22 13:11:18 2025
From: noreply at github.com (alexsav815)
Date: Mon, 22 Sep 2025 12:11:18 -0700
Subject: [us-commits] [ehb54/ultrascan3] 5edb9c: [4]GMP | 1. EXP.: AProfile
 && 4. EDIT -- init. ste...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/5c98f8-5edb9c@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 5edb9ce91335769271fb5f593482a97dc4233059
      https://github.com/ehb54/ultrascan3/commit/5edb9ce91335769271fb5f593482a97dc4233059
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [4]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...



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From noreply at github.com  Mon Sep 22 13:21:16 2025
From: noreply at github.com (alexsav815)
Date: Mon, 22 Sep 2025 12:21:16 -0700
Subject: [us-commits] [ehb54/ultrascan3] 9aff49: [5]GMP | 1. EXP.: AProfile
 && 4. EDIT -- init. ste...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/5edb9c-9aff49@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 9aff495b37873080961f8c231a3ce673377f80d3
      https://github.com/ehb54/ultrascan3/commit/9aff495b37873080961f8c231a3ce673377f80d3
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [5]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...



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From noreply at github.com  Mon Sep 22 13:31:23 2025
From: noreply at github.com (alexsav815)
Date: Mon, 22 Sep 2025 12:31:23 -0700
Subject: [us-commits] [ehb54/ultrascan3] 1351f8: [5a]GMP | 1. EXP.: AProfile
 && 4. EDIT -- init. st...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/9aff49-1351f8@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 1351f83ecb06b104ec53c3eac4dfa8e1deb9e008
      https://github.com/ehb54/ultrascan3/commit/1351f83ecb06b104ec53c3eac4dfa8e1deb9e008
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [5a]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...



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From noreply at github.com  Mon Sep 22 13:48:30 2025
From: noreply at github.com (alexsav815)
Date: Mon, 22 Sep 2025 12:48:30 -0700
Subject: [us-commits] [ehb54/ultrascan3] 321a8c: [5b-TEST]GMP | 1. EXP.:
 AProfile && 4. EDIT -- ini...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/1351f8-321a8c@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 321a8cba345ec3c3f2187e0ba10f28376fd49a3e
      https://github.com/ehb54/ultrascan3/commit/321a8cba345ec3c3f2187e0ba10f28376fd49a3e
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit_main.cpp

  Log Message:
  -----------
  [5b-TEST]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...



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From noreply at github.com  Mon Sep 22 13:52:58 2025
From: noreply at github.com (alexsav815)
Date: Mon, 22 Sep 2025 12:52:58 -0700
Subject: [us-commits] [ehb54/ultrascan3] 373ac0: [6b-TEST]GMP | 1. EXP.:
 AProfile && 4. EDIT -- ini...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/321a8c-373ac0@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 373ac0ac501856ea0df8f4f579f953d89ec810b0
      https://github.com/ehb54/ultrascan3/commit/373ac0ac501856ea0df8f4f579f953d89ec810b0
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [6b-TEST]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...



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From noreply at github.com  Mon Sep 22 14:00:05 2025
From: noreply at github.com (alexsav815)
Date: Mon, 22 Sep 2025 13:00:05 -0700
Subject: [us-commits] [ehb54/ultrascan3] ea3905: [6b-TEST- restore]GMP | 1.
 EXP.: AProfile && 4. ED...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/373ac0-ea3905@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: ea3905ba9097c5eed14e034d6656fd0c84dff988
      https://github.com/ehb54/ultrascan3/commit/ea3905ba9097c5eed14e034d6656fd0c84dff988
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit_main.cpp

  Log Message:
  -----------
  [6b-TEST- restore]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...



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From noreply at github.com  Mon Sep 22 14:15:36 2025
From: noreply at github.com (alexsav815)
Date: Mon, 22 Sep 2025 13:15:36 -0700
Subject: [us-commits] [ehb54/ultrascan3] ed8dbf: [7-TEST- restore]GMP | 1.
 EXP.: AProfile && 4. EDI...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/ea3905-ed8dbf@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: ed8dbfb27ca0afd51e92c0717d6e05536217b8b4
      https://github.com/ehb54/ultrascan3/commit/ed8dbfb27ca0afd51e92c0717d6e05536217b8b4
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [7-TEST- restore]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...



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From noreply at github.com  Mon Sep 22 14:48:23 2025
From: noreply at github.com (Borries Demeler)
Date: Mon, 22 Sep 2025 13:48:23 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/bad-timestate/046484-000000@github.com>

  Branch: refs/heads/lukas/bad-timestate
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Mon Sep 22 14:48:30 2025
From: noreply at github.com (Borries Demeler)
Date: Mon, 22 Sep 2025 13:48:30 -0700
Subject: [us-commits] [ehb54/ultrascan3] d29359: Add function to check
 acceleration rate and first ...
Message-ID: <ehb54/ultrascan3/push/refs/heads/master/347ef4-df769b@github.com>

  Branch: refs/heads/master
  Home:   https://github.com/ehb54/ultrascan3
  Commit: d29359d571538fdcdba340546c1ace762f2585f7
      https://github.com/ehb54/ultrascan3/commit/d29359d571538fdcdba340546c1ace762f2585f7
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h

  Log Message:
  -----------
  Add function to check acceleration rate and first scan validity

Introduced `check_acceleration()` in `US_AstfemMath` to validate acceleration rates and detect potential issues with first scan timing. Enhanced error reporting for experiments with low acceleration or scans during acceleration phase. Updated header file accordingly.


  Commit: 00b9132e2f4a788b4b056a3277c0b52a4f0adec4
      https://github.com/ehb54/ultrascan3/commit/00b9132e2f4a788b4b056a3277c0b52a4f0adec4
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_2dsa/us_2dsa.cpp

  Log Message:
  -----------
  Refactor speed step validation logic and integrate `check_acceleration()`

Replaced manual speed step validation with the `check_acceleration()` function from `US_AstfemMath`, improving modularity and error detection. Enhanced message box handling for better user feedback on scan timing and acceleration issues.


  Commit: b3b5449d21badd09a6c72964db5f09a1c6ac22ab
      https://github.com/ehb54/ultrascan3/commit/b3b5449d21badd09a6c72964db5f09a1c6ac22ab
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp

  Log Message:
  -----------
  Replace manual acceleration checks with `check_acceleration()` helper

Streamlined acceleration validation using `US_AstfemMath::check_acceleration()` for improved modularity, reduced code redundancy, and enhanced error handling. Updated message box logic to display detailed user feedback when issues are detected.


  Commit: e7990f3902c576ee20053e446ae508e1d193ef29
      https://github.com/ehb54/ultrascan3/commit/e7990f3902c576ee20053e446ae508e1d193ef29
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_convert/us_convert_gui.cpp

  Log Message:
  -----------
  Refactor message box logic and integrate updated `check_acceleration()` validation

Simplified acceleration validation by utilizing `US_AstfemMath::check_acceleration()`. Streamlined message box handling to improve readability and user feedback for experiments with acceleration issues.


  Commit: 31e99caf2928581de4943b1119be73a9436d1447
      https://github.com/ehb54/ultrascan3/commit/31e99caf2928581de4943b1119be73a9436d1447
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  Remove obsolete low acceleration check and associated UI logic

Eliminated redundant low acceleration validation and message box logic from `us_experiment_gui_optima.cpp`, simplifying the code and improving maintainability.


  Commit: 91d63509d1f79d315225eff1b2d7fb5b6115ecc3
      https://github.com/ehb54/ultrascan3/commit/91d63509d1f79d315225eff1b2d7fb5b6115ecc3
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_fematch/us_fematch.cpp

  Log Message:
  -----------
  Replace manual acceleration UI logic with `check_acceleration()` integration

Streamlined acceleration validation by utilizing `US_AstfemMath::check_acceleration()`. Removed redundant manual checks and simplified message box handling for improved user feedback and code maintainability.


  Commit: a460bef08c775745062f6fe891f2893e2002d117
      https://github.com/ehb54/ultrascan3/commit/a460bef08c775745062f6fe891f2893e2002d117
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_mpi_analysis/us_mpi_analysis.cpp

  Log Message:
  -----------
  Replace manual acceleration UI logic with `check_acceleration()` integration

Streamlined acceleration validation by utilizing `US_AstfemMath::check_acceleration()`. Removed redundant manual checks and simplified message box handling for improved user feedback and code maintainability.


  Commit: 009aba4948371da1e6e6f05f46f5a11c092b324c
      https://github.com/ehb54/ultrascan3/commit/009aba4948371da1e6e6f05f46f5a11c092b324c
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  Integrate `check_acceleration()` in `us_reporter_gmp.cpp`

Replaced manual acceleration checks with `US_AstfemMath::check_acceleration()`, streamlining validation and improving error reporting with enhanced message box logic. Removed redundant code for better maintainability.


  Commit: bee67ad94ebbc7c9821dc0aad18e6bce737b4568
      https://github.com/ehb54/ultrascan3/commit/bee67ad94ebbc7c9821dc0aad18e6bce737b4568
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Update utils/us_astfem_math.cpp

Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com>


  Commit: 227d32eb57b85946a3d39e4643719738eeddabb5
      https://github.com/ehb54/ultrascan3/commit/227d32eb57b85946a3d39e4643719738eeddabb5
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Update utils/us_astfem_math.cpp

Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com>


  Commit: fa44532656ec9a8863fe76d5878356f412f827fb
      https://github.com/ehb54/ultrascan3/commit/fa44532656ec9a8863fe76d5878356f412f827fb
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp

  Log Message:
  -----------
  Integrate `check_acceleration()` in `us_vhw_enhanced.cpp`

Added validation for acceleration profiles using `US_AstfemMath::check_acceleration()`. Enhanced message box logic for user feedback and streamlined error handling for scan data issues.


  Commit: 3b4ade0ff450252975099029f53fae26589346a6
      https://github.com/ehb54/ultrascan3/commit/3b4ade0ff450252975099029f53fae26589346a6
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M gui/us_analysis_base2.cpp

  Log Message:
  -----------
  Integrate `check_acceleration()` in `us_analysis_base2.cpp` in order to add it to us_second_moment, us_dcdt, us_pcsa

Added acceleration validation leveraging `US_AstfemMath::check_acceleration()`. Enhanced message box logic for user feedback and streamlined error handling for scan data issues.


  Commit: 803cac4e0551cf55251878109066602030536089
      https://github.com/ehb54/ultrascan3/commit/803cac4e0551cf55251878109066602030536089
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M programs/us_fematch/us_fematch.cpp

  Log Message:
  -----------
  Integrate `check_acceleration()` in `us_fematch.cpp`

Replaced manual acceleration validation with `US_AstfemMath::check_acceleration()`. Improved error handling and message box logic to provide better user feedback for scan data issues.


  Commit: 6147e952e75e949c7809a98a21beb2107f87e395
      https://github.com/ehb54/ultrascan3/commit/6147e952e75e949c7809a98a21beb2107f87e395
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.h

  Log Message:
  -----------
  Clarify `check_acceleration()` documentation for return format and behavior


  Commit: d976a8685de0adc6d272b35cec81016a34e4a38e
      https://github.com/ehb54/ultrascan3/commit/d976a8685de0adc6d272b35cec81016a34e4a38e
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Refactor `check_acceleration()` logic for improved readability and robustness

Simplified variable naming, added guards for edge cases, and clarified acceleration rate and time checks. Enhanced error messages to provide more detailed user feedback.


  Commit: 6c6ba45b05dacb1c10cf803c959c2b9b4bdbe14c
      https://github.com/ehb54/ultrascan3/commit/6c6ba45b05dacb1c10cf803c959c2b9b4bdbe14c
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp

  Log Message:
  -----------
  Fix incorrect dereference of `edata` in `check_acceleration()` call


  Commit: 103683b0b42e6d3ee23a86bb3749b3cc0aa08e11
      https://github.com/ehb54/ultrascan3/commit/103683b0b42e6d3ee23a86bb3749b3cc0aa08e11
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  Fix incorrect dereference of `edata` in `check_acceleration()` call within `us_reporter_gmp.cpp`


  Commit: 9d51aa93fbdb6f1a84076e3ddd128210f701d29d
      https://github.com/ehb54/ultrascan3/commit/9d51aa93fbdb6f1a84076e3ddd128210f701d29d
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-19 (Fri, 19 Sep 2025)

  Changed paths:
    M gui/us_analysis_base2.cpp

  Log Message:
  -----------
  Refactor speed profile and time state handling in `us_analysis_base2.cpp`

Refactored speed profile processing to improve clarity and maintainability. Added enhanced logic to handle time state files and initialization of simulation parameters. Simplified acceleration checks using `US_AstfemMath::check_acceleration()`.


  Commit: 1f7336dfecb15d81c71c88e6922196f0137c6431
      https://github.com/ehb54/ultrascan3/commit/1f7336dfecb15d81c71c88e6922196f0137c6431
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-19 (Fri, 19 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Adjust `kT1Factor` initialization and format specifiers in error messages

Revised `kT1Factor` to use explicit calculation for enhanced clarity. Updated float formatting in error messages from 'g' to 'f' for consistent precision in user feedback.


  Commit: b29fc424db0d4aa7e5e60d830be2fbadb73666e1
      https://github.com/ehb54/ultrascan3/commit/b29fc424db0d4aa7e5e60d830be2fbadb73666e1
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-19 (Fri, 19 Sep 2025)

  Changed paths:
    M programs/us_2dsa/us_2dsa.cpp

  Log Message:
  -----------
  Remove manual `check_acceleration()` validation in `us_2dsa.cpp`

Eliminated redundant acceleration validation logic and message box handling. Streamlined by removing unused `US_AstfemMath::check_acceleration()` integration.


  Commit: 626668c35b1cdd774c6ba744a7cd473feb548602
      https://github.com/ehb54/ultrascan3/commit/626668c35b1cdd774c6ba744a7cd473feb548602
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-19 (Fri, 19 Sep 2025)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_fematch/us_fematch.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  Simplify `check_results` bounds checks in message box handling across programs


  Commit: b21a559ee9e33fed395a785dbaa8f14fe58e9831
      https://github.com/ehb54/ultrascan3/commit/b21a559ee9e33fed395a785dbaa8f14fe58e9831
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-19 (Fri, 19 Sep 2025)

  Changed paths:
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp

  Log Message:
  -----------
  Remove unused `check_acceleration` logic and disable `update(0)` call in `us_vhw_enhanced.cpp` to prevent unnecessary update cycle


  Commit: e49834c3a05a6ffbc730f24be564d3c319a06d2a
      https://github.com/ehb54/ultrascan3/commit/e49834c3a05a6ffbc730f24be564d3c319a06d2a
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h

  Log Message:
  -----------
  Add `calc_omega2t` functionality to `US_AstfemMath` for omega2t calculations

Introduced a new method `calc_omega2t` in `US_AstfemMath` to calculate omega2t values based on speed profiles, acceleration rates, and time parameters. Enhanced flexibility for processing speed step data.


  Commit: 046484c8433d54042b223de7aebd2b793424b6a9
      https://github.com/ehb54/ultrascan3/commit/046484c8433d54042b223de7aebd2b793424b6a9
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M programs/us_astfem_sim/us_astfem_sim.cpp

  Log Message:
  -----------
  Refactor speed step simulation logic in `us_astfem_sim.cpp`

Streamlined speed profile processing by removing redundant legacy logic and incorporating `calc_omega2t` for precise omega2t and time grid calculations. Enhanced clarity and maintainability of simulation loop.


  Commit: df769b270aea86fedc2fb0da2875e71741354606
      https://github.com/ehb54/ultrascan3/commit/df769b270aea86fedc2fb0da2875e71741354606
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M gui/us_analysis_base2.cpp
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_fematch/us_fematch.cpp
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h

  Log Message:
  -----------
  Merge pull request #262 from ehb54/lukas/bad-timestate

Bad timestate warnings


Compare: https://github.com/ehb54/ultrascan3/compare/347ef44a538b...df769b270aea

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From noreply at github.com  Tue Sep 23 08:30:39 2025
From: noreply at github.com (Lukas Dobler)
Date: Tue, 23 Sep 2025 07:30:39 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/window-management/ddc167-000000@github.com>

  Branch: refs/heads/lukas/window-management
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Tue Sep 23 08:30:05 2025
From: noreply at github.com (Lukas Dobler)
Date: Tue, 23 Sep 2025 07:30:05 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/clang-format-example-microsoft/57684f-000000@github.com>

  Branch: refs/heads/lukas/clang-format-example-microsoft
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From noreply at github.com  Tue Sep 23 08:25:45 2025
From: noreply at github.com (Lukas Dobler)
Date: Tue, 23 Sep 2025 07:25:45 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/us_math2linefit-doxygen/ccb241-000000@github.com>

  Branch: refs/heads/us_math2linefit-doxygen
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From noreply at github.com  Tue Sep 23 08:25:41 2025
From: noreply at github.com (Lukas Dobler)
Date: Tue, 23 Sep 2025 07:25:41 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/Lukas-low-speed-convert/014528-000000@github.com>

  Branch: refs/heads/Lukas-low-speed-convert
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From noreply at github.com  Tue Sep 23 08:25:37 2025
From: noreply at github.com (Lukas Dobler)
Date: Tue, 23 Sep 2025 07:25:37 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas-bug-388/522bfd-000000@github.com>

  Branch: refs/heads/lukas-bug-388
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From noreply at github.com  Tue Sep 23 10:02:57 2025
From: noreply at github.com (ehb54)
Date: Tue, 23 Sep 2025 09:02:57 -0700
Subject: [us-commits] [ehb54/us3_sql] 71a561: [SQL for] [test2]GMP | 5.
 ANALYSIS -- fix for fals...
Message-ID: <ehb54/us3_sql/push/refs/heads/master/9375d5-6ffbfa@github.com>

  Branch: refs/heads/master
  Home:   https://github.com/ehb54/us3_sql
  Commit: 71a561316a869efb3d8a4a212f34d448af5ee5f0
      https://github.com/ehb54/us3_sql/commit/71a561316a869efb3d8a4a212f34d448af5ee5f0
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M us3_model_procs.sql

  Log Message:
  -----------
  [SQL for] [test2]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis......


  Commit: 6ffbfa7edcdd8ba25d019ec6f4aad9810606d12b
      https://github.com/ehb54/us3_sql/commit/6ffbfa7edcdd8ba25d019ec6f4aad9810606d12b
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-09-23 (Tue, 23 Sep 2025)

  Changed paths:
    M us3_model_procs.sql

  Log Message:
  -----------
  Merge pull request #19 from ehb54/alexey-dev-for-issue553

[SQL for] [test2]GMP | 5. ANALYSIS -- fix for false 'no -FM data' mes?


Compare: https://github.com/ehb54/us3_sql/compare/9375d5d07093...6ffbfa7edcdd

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From noreply at github.com  Tue Sep 23 08:28:05 2025
From: noreply at github.com (Lukas Dobler)
Date: Tue, 23 Sep 2025 07:28:05 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/workflow-upgrade/28b9db-000000@github.com>

  Branch: refs/heads/lukas/workflow-upgrade
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From noreply at github.com  Tue Sep 23 08:25:34 2025
From: noreply at github.com (Lukas Dobler)
Date: Tue, 23 Sep 2025 07:25:34 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_astfem_sim_empty_simparams/d3a9e0-000000@github.com>

  Branch: refs/heads/lukas/us_astfem_sim_empty_simparams
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From noreply at github.com  Tue Sep 23 08:25:32 2025
From: noreply at github.com (Lukas Dobler)
Date: Tue, 23 Sep 2025 07:25:32 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_astfem_sim_timestate/25a0b6-000000@github.com>

  Branch: refs/heads/lukas/us_astfem_sim_timestate
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Tue Sep 23 10:58:23 2025
From: noreply at github.com (Borries Demeler)
Date: Tue, 23 Sep 2025 09:58:23 -0700
Subject: [us-commits] [ehb54/ultrascan3] 52d2e1: GMP | 1. EXP.: 8.Aprofile
 -- [Add model ID to fram...
Message-ID: <ehb54/ultrascan3/push/refs/heads/master/df769b-021924@github.com>

  Branch: refs/heads/master
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 52d2e12f19167416a58de29b71876a11edd2caf6
      https://github.com/ehb54/ultrascan3/commit/52d2e12f19167416a58de29b71876a11edd2caf6
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-12 (Fri, 12 Sep 2025)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M utils/us_ana_profile.cpp
    M utils/us_ana_profile.h

  Log Message:
  -----------
  GMP | 1. EXP.: 8.Aprofile -- [Add model ID to framework]custom grid implementation...


  Commit: 5c1814ae911784afd312e835594b931008d8bed4
      https://github.com/ehb54/ultrascan3/commit/5c1814ae911784afd312e835594b931008d8bed4
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-12 (Fri, 12 Sep 2025)

  Changed paths:
    M utils/us_ana_profile.cpp

  Log Message:
  -----------
  [1]GMP | 1. EXP.: 8.Aprofile -- [Add model ID to framework]custom grid implementation...


  Commit: 4e5d8b4cc07c2a5c5065886cf61e61c76fafffad
      https://github.com/ehb54/ultrascan3/commit/4e5d8b4cc07c2a5c5065886cf61e61c76fafffad
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-14 (Sun, 14 Sep 2025)

  Changed paths:
    M utils/us_ana_profile.cpp

  Log Message:
  -----------
  [2]GMP | 1. EXP.: 8.Aprofile -- [Add model ID to framework]custom grid implementation...ush


  Commit: 747e42f7732dc906533cbd0cd954e81e3e565d98
      https://github.com/ehb54/ultrascan3/commit/747e42f7732dc906533cbd0cd954e81e3e565d98
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.cpp

  Log Message:
  -----------
  GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...


  Commit: 0337b97ebfe25072971b60c29b4a2d390667da17
      https://github.com/ehb54/ultrascan3/commit/0337b97ebfe25072971b60c29b4a2d390667da17
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M programs/us_fit_meniscus/us_fit_meniscus_main.cpp

  Log Message:
  -----------
  [test1]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...


  Commit: 77987890dfd45f62499deda691795b2e88ed4c26
      https://github.com/ehb54/ultrascan3/commit/77987890dfd45f62499deda691795b2e88ed4c26
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M programs/us_fit_meniscus/us_fit_meniscus_main.cpp

  Log Message:
  -----------
  [test2]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...


  Commit: f0d642fb0b9364e641fb3119b5eb5f3d9a70d908
      https://github.com/ehb54/ultrascan3/commit/f0d642fb0b9364e641fb3119b5eb5f3d9a70d908
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.cpp

  Log Message:
  -----------
  [test4]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...


  Commit: cabec77d85cef315e34c7a7362b56b19524d3972
      https://github.com/ehb54/ultrascan3/commit/cabec77d85cef315e34c7a7362b56b19524d3972
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [test5]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...


  Commit: ffb3fb9dc2da42d44a60eaefd9a678aea956a204
      https://github.com/ehb54/ultrascan3/commit/ffb3fb9dc2da42d44a60eaefd9a678aea956a204
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M gui/us_model_loader.cpp

  Log Message:
  -----------
  [test6]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...


  Commit: 8373d17ba7f453a11426f8935218990b8e317f51
      https://github.com/ehb54/ultrascan3/commit/8373d17ba7f453a11426f8935218990b8e317f51
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [test77]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...


  Commit: 9fb462a87d5cfef990e583e0aa8dda091841052b
      https://github.com/ehb54/ultrascan3/commit/9fb462a87d5cfef990e583e0aa8dda091841052b
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_fematch/us_resplot_fem.cpp

  Log Message:
  -----------
  [debug]GMP | 6. REPORT: CG -- ...


  Commit: 42982afb88ddce0d00ece507d399d59735905d72
      https://github.com/ehb54/ultrascan3/commit/42982afb88ddce0d00ece507d399d59735905d72
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug1]GMP | 6. REPORT: CG -- ...


  Commit: 493798b230e227ab68985ca50882c28058efd160
      https://github.com/ehb54/ultrascan3/commit/493798b230e227ab68985ca50882c28058efd160
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug2]GMP | 6. REPORT: CG -- ...


  Commit: a468cc16f534c3769ca2b90b209848d226d596fc
      https://github.com/ehb54/ultrascan3/commit/a468cc16f534c3769ca2b90b209848d226d596fc
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug3]GMP | 6. REPORT: CG -- ...


  Commit: 35851638d1fc647e0bd2dd3861e329898ac2fec1
      https://github.com/ehb54/ultrascan3/commit/35851638d1fc647e0bd2dd3861e329898ac2fec1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug4]GMP | 6. REPORT: CG -- ...


  Commit: 8de77f30a55f3d955960b24d9fc654f85a643da1
      https://github.com/ehb54/ultrascan3/commit/8de77f30a55f3d955960b24d9fc654f85a643da1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug5]GMP | 6. REPORT: CG -- ...


  Commit: 116f06f0e3cb97e592455a896ea074987b1d687d
      https://github.com/ehb54/ultrascan3/commit/116f06f0e3cb97e592455a896ea074987b1d687d
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug5]GMP | 6. REPORT: CG -- ...


  Commit: ada9fc194b6107aa9234582f328928f990f49ab8
      https://github.com/ehb54/ultrascan3/commit/ada9fc194b6107aa9234582f328928f990f49ab8
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug7]GMP | 6. REPORT: CG -- ...


  Commit: 021924be498aba94508063128ff7d169d1d6c80c
      https://github.com/ehb54/ultrascan3/commit/021924be498aba94508063128ff7d169d1d6c80c
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-09-23 (Tue, 23 Sep 2025)

  Changed paths:
    M gui/us_model_loader.cpp
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_fematch/us_resplot_fem.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.cpp
    M programs/us_fit_meniscus/us_fit_meniscus_main.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M utils/us_ana_profile.cpp
    M utils/us_ana_profile.h

  Log Message:
  -----------
  Merge pull request #261 from ehb54/alexey-dev-issue553

Alexey dev issue553: GMP-Custom grid: pass also CG-modelID throught the framework


Compare: https://github.com/ehb54/ultrascan3/compare/df769b270aea...021924be498a

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From noreply at github.com  Tue Sep 23 10:58:26 2025
From: noreply at github.com (Borries Demeler)
Date: Tue, 23 Sep 2025 09:58:26 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue553/ada9fc-000000@github.com>

  Branch: refs/heads/alexey-dev-issue553
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Wed Sep 24 10:20:15 2025
From: noreply at github.com (alexsav815)
Date: Wed, 24 Sep 2025 09:20:15 -0700
Subject: [us-commits] [ehb54/ultrascan3] 905f41: GMP | 1. EXP.: AProfile &&
 4. EDIT -- [proper sett...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/ed8dbf-905f41@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 905f41462ec9dab9667e915d639af2970e21a7a4
      https://github.com/ehb54/ultrascan3/commit/905f41462ec9dab9667e915d639af2970e21a7a4
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-24 (Wed, 24 Sep 2025)

  Changed paths:
    M gui/us_scan_excl_gui.cpp

  Log Message:
  -----------
  GMP | 1. EXP.: AProfile && 4. EDIT -- [proper settings of min/max for scan_beg|nth|end for different optics systems] init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...



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From noreply at github.com  Wed Sep 24 11:49:33 2025
From: noreply at github.com (Lukas Dobler)
Date: Wed, 24 Sep 2025 10:49:33 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_xpn_viewer_timestate/000000-021924@github.com>

  Branch: refs/heads/lukas/us_xpn_viewer_timestate
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Wed Sep 24 12:48:31 2025
From: noreply at github.com (alexsav815)
Date: Wed, 24 Sep 2025 11:48:31 -0700
Subject: [us-commits] [ehb54/ultrascan3] 671b8e: GMP | 1. EXP.: AProfile &&
 4. EDIT -- [UNIT TEST f...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/905f41-671b8e@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 671b8e4d0e4951014a52280942d6a6c9712f14fa
      https://github.com/ehb54/ultrascan3/commit/671b8e4d0e4951014a52280942d6a6c9712f14fa
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-24 (Wed, 24 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit_main.cpp

  Log Message:
  -----------
  GMP | 1. EXP.: AProfile && 4. EDIT -- [UNIT TEST for multi-channel run] init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...



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From noreply at github.com  Wed Sep 24 13:07:20 2025
From: noreply at github.com (alexsav815)
Date: Wed, 24 Sep 2025 12:07:20 -0700
Subject: [us-commits] [ehb54/ultrascan3] d584fa: GMP | 1. EXP.: AProfile &&
 4. EDIT -- [RESTORE--UN...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/671b8e-d584fa@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: d584fa48438a0f9d744b750a6abe23533cc48b52
      https://github.com/ehb54/ultrascan3/commit/d584fa48438a0f9d744b750a6abe23533cc48b52
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-24 (Wed, 24 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit_main.cpp

  Log Message:
  -----------
  GMP | 1. EXP.: AProfile && 4. EDIT -- [RESTORE--UNIT TEST for multi-channel run] init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...



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From noreply at github.com  Wed Sep 24 13:25:06 2025
From: noreply at github.com (alexsav815)
Date: Wed, 24 Sep 2025 12:25:06 -0700
Subject: [us-commits] [ehb54/ultrascan3] 84f86b: [DEBUGS]GMP | 1. EXP.:
 AProfile && 4. EDIT -- init...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/d584fa-84f86b@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 84f86b86f77bbcd33e113217d09cbda59701b58b
      https://github.com/ehb54/ultrascan3/commit/84f86b86f77bbcd33e113217d09cbda59701b58b
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-24 (Wed, 24 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [DEBUGS]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...



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From noreply at github.com  Wed Sep 24 13:36:32 2025
From: noreply at github.com (alexsav815)
Date: Wed, 24 Sep 2025 12:36:32 -0700
Subject: [us-commits] [ehb54/ultrascan3] 8ecca1: [1 DEBUGS]GMP | 1. EXP.:
 AProfile && 4. EDIT -- in...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/84f86b-8ecca1@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 8ecca10f20a347fd906905b16f8e85ef5afff22a
      https://github.com/ehb54/ultrascan3/commit/8ecca10f20a347fd906905b16f8e85ef5afff22a
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-24 (Wed, 24 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [1 DEBUGS]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...



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From noreply at github.com  Wed Sep 24 13:50:15 2025
From: noreply at github.com (alexsav815)
Date: Wed, 24 Sep 2025 12:50:15 -0700
Subject: [us-commits] [ehb54/ultrascan3] fe9b90: [2 DEBUGS]GMP | 1. EXP.:
 AProfile && 4. EDIT -- in...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/8ecca1-fe9b90@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: fe9b9031b3af683efa02792cf18ca46a51d376d8
      https://github.com/ehb54/ultrascan3/commit/fe9b9031b3af683efa02792cf18ca46a51d376d8
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-24 (Wed, 24 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [2 DEBUGS]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...



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From noreply at github.com  Wed Sep 24 14:32:16 2025
From: noreply at github.com (alexsav815)
Date: Wed, 24 Sep 2025 13:32:16 -0700
Subject: [us-commits] [ehb54/ultrascan3] 4c16cc: GMP | 1. EXP.: AProfile &&
 4. EDIT -- treat scan e...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/fe9b90-4c16cc@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 4c16cc30bec6d2d9ea234a0ad826339c18f1dc27
      https://github.com/ehb54/ultrascan3/commit/4c16cc30bec6d2d9ea234a0ad826339c18f1dc27
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-24 (Wed, 24 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  GMP | 1. EXP.: AProfile && 4. EDIT -- treat scan exclusion differently for ABDE vs. VELOCITY types (ABDE - usually only last scan remains for each triple, ensured manually; VEL. - based on AProfile's settings beg|nth|end)...



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From noreply at github.com  Wed Sep 24 18:02:16 2025
From: noreply at github.com (aaron-auc)
Date: Wed, 24 Sep 2025 17:02:16 -0700
Subject: [us-commits] [ehb54/ultrascan3] dd3e9b: Update CMakeLists.txt
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/d9ed24-dd3e9b@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: dd3e9be9669f28156c33235c7e73db3040c614a5
      https://github.com/ehb54/ultrascan3/commit/dd3e9be9669f28156c33235c7e73db3040c614a5
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2025-09-24 (Wed, 24 Sep 2025)

  Changed paths:
    M CMakeLists.txt

  Log Message:
  -----------
  Update CMakeLists.txt

Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>



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From noreply at github.com  Wed Sep 24 18:05:18 2025
From: noreply at github.com (aaron-auc)
Date: Wed, 24 Sep 2025 17:05:18 -0700
Subject: [us-commits] [ehb54/ultrascan3] 93c11d: Update CMakeLists.txt
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/dd3e9b-93c11d@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 93c11d987df52db6a1d9484f4f49a7acb54bd4dc
      https://github.com/ehb54/ultrascan3/commit/93c11d987df52db6a1d9484f4f49a7acb54bd4dc
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2025-09-24 (Wed, 24 Sep 2025)

  Changed paths:
    M CMakeLists.txt

  Log Message:
  -----------
  Update CMakeLists.txt

Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>



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From noreply at github.com  Wed Sep 24 18:05:48 2025
From: noreply at github.com (aaron-auc)
Date: Wed, 24 Sep 2025 17:05:48 -0700
Subject: [us-commits] [ehb54/ultrascan3] ea9923: Update utils/CMakeLists.txt
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/93c11d-ea9923@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: ea99232fad84d9c9e2e785ee18794694bb22b883
      https://github.com/ehb54/ultrascan3/commit/ea99232fad84d9c9e2e785ee18794694bb22b883
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2025-09-24 (Wed, 24 Sep 2025)

  Changed paths:
    M utils/CMakeLists.txt

  Log Message:
  -----------
  Update utils/CMakeLists.txt

Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>



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From noreply at github.com  Wed Sep 24 18:07:57 2025
From: noreply at github.com (aaron-auc)
Date: Wed, 24 Sep 2025 17:07:57 -0700
Subject: [us-commits] [ehb54/ultrascan3] a13445: Update gui/CMakeLists.txt
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/ea9923-a13445@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: a1344544e53b2158a855ac3ddb3296bbb15d21e0
      https://github.com/ehb54/ultrascan3/commit/a1344544e53b2158a855ac3ddb3296bbb15d21e0
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2025-09-24 (Wed, 24 Sep 2025)

  Changed paths:
    M gui/CMakeLists.txt

  Log Message:
  -----------
  Update gui/CMakeLists.txt

Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>



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From noreply at github.com  Wed Sep 24 18:08:23 2025
From: noreply at github.com (aaron-auc)
Date: Wed, 24 Sep 2025 17:08:23 -0700
Subject: [us-commits] [ehb54/ultrascan3] 6115f7: Update
 test/utils/CMakeLists.txt
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/a13445-6115f7@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 6115f78b236f317ecc7ce852c9541d8ac10084e4
      https://github.com/ehb54/ultrascan3/commit/6115f78b236f317ecc7ce852c9541d8ac10084e4
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2025-09-24 (Wed, 24 Sep 2025)

  Changed paths:
    M test/utils/CMakeLists.txt

  Log Message:
  -----------
  Update test/utils/CMakeLists.txt

Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>



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From noreply at github.com  Thu Sep 25 13:53:14 2025
From: noreply at github.com (alexsav815)
Date: Thu, 25 Sep 2025 12:53:14 -0700
Subject: [us-commits] [ehb54/ultrascan3] b1ff38: GMP | 6. REPORT -- display
 scan exclusion settings...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/4c16cc-b1ff38@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: b1ff389cba607cd5f34556fb6945f050ad099ff8
      https://github.com/ehb54/ultrascan3/commit/b1ff389cba607cd5f34556fb6945f050ad099ff8
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-25 (Thu, 25 Sep 2025)

  Changed paths:
    M gui/us_scan_excl_gui.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...



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From noreply at github.com  Thu Sep 25 14:07:57 2025
From: noreply at github.com (alexsav815)
Date: Thu, 25 Sep 2025 13:07:57 -0700
Subject: [us-commits] [ehb54/ultrascan3] b557af: [1]GMP | 6. REPORT --
 display scan exclusion setti...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/b1ff38-b557af@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: b557af349d02a148cef58c38976319f129cf4afa
      https://github.com/ehb54/ultrascan3/commit/b557af349d02a148cef58c38976319f129cf4afa
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-25 (Thu, 25 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  [1]GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...



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From noreply at github.com  Thu Sep 25 14:11:28 2025
From: noreply at github.com (alexsav815)
Date: Thu, 25 Sep 2025 13:11:28 -0700
Subject: [us-commits] [ehb54/ultrascan3] 57f3b6: [1]GMP | 6. REPORT --
 display scan exclusion setti...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/b557af-57f3b6@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 57f3b61a10ffe0edcfdee555dbf12a7a6d15dc11
      https://github.com/ehb54/ultrascan3/commit/57f3b61a10ffe0edcfdee555dbf12a7a6d15dc11
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-25 (Thu, 25 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [1]GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...



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From noreply at github.com  Thu Sep 25 14:13:37 2025
From: noreply at github.com (alexsav815)
Date: Thu, 25 Sep 2025 13:13:37 -0700
Subject: [us-commits] [ehb54/ultrascan3] 825feb: [3]GMP | 6. REPORT --
 display scan exclusion setti...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/57f3b6-825feb@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 825febd6fda9e31b55b9c0e13a0f2af701b3c6e0
      https://github.com/ehb54/ultrascan3/commit/825febd6fda9e31b55b9c0e13a0f2af701b3c6e0
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-25 (Thu, 25 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [3]GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...



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From noreply at github.com  Thu Sep 25 14:20:59 2025
From: noreply at github.com (alexsav815)
Date: Thu, 25 Sep 2025 13:20:59 -0700
Subject: [us-commits] [ehb54/ultrascan3] 4f9217: [4]GMP | 6. REPORT --
 display scan exclusion setti...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/825feb-4f9217@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 4f9217705b688c38c3e420a609c2692c23a7e160
      https://github.com/ehb54/ultrascan3/commit/4f9217705b688c38c3e420a609c2692c23a7e160
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-25 (Thu, 25 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [4]GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...



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From noreply at github.com  Thu Sep 25 14:28:44 2025
From: noreply at github.com (alexsav815)
Date: Thu, 25 Sep 2025 13:28:44 -0700
Subject: [us-commits] [ehb54/ultrascan3] f83796: [5]GMP | 6. REPORT --
 display scan exclusion setti...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/4f9217-f83796@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: f8379662ac83a104ca49b29cc3b5a7f830944d05
      https://github.com/ehb54/ultrascan3/commit/f8379662ac83a104ca49b29cc3b5a7f830944d05
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-25 (Thu, 25 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [5]GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...



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From noreply at github.com  Thu Sep 25 21:16:35 2025
From: noreply at github.com (aaron-auc)
Date: Thu, 25 Sep 2025 20:16:35 -0700
Subject: [us-commits] [ehb54/ultrascan3] e87ab9: fix: cmake collision during
 build
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/6115f7-e87ab9@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: e87ab944bf93815dda5842e3dadee3249c11a52c
      https://github.com/ehb54/ultrascan3/commit/e87ab944bf93815dda5842e3dadee3249c11a52c
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-25 (Thu, 25 Sep 2025)

  Changed paths:
    M programs/CMakeLists.txt
    M test-docker.sh
    M test/utils/CMakeLists.txt
    M test/utils/test_us_vector.cpp

  Log Message:
  -----------
  fix: cmake collision during build



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From noreply at github.com  Thu Sep 25 21:32:53 2025
From: noreply at github.com (aaron-auc)
Date: Thu, 25 Sep 2025 20:32:53 -0700
Subject: [us-commits] [ehb54/ultrascan3] 4a401e: fix: add QWT to
 us_program_common
Message-ID: <ehb54/ultrascan3/push/refs/heads/aaron-dev-test-utils/e87ab9-4a401e@github.com>

  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 4a401e5be566119b5510674930f3b4365211a052
      https://github.com/ehb54/ultrascan3/commit/4a401e5be566119b5510674930f3b4365211a052
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-09-25 (Thu, 25 Sep 2025)

  Changed paths:
    M programs/CMakeLists.txt

  Log Message:
  -----------
  fix: add QWT to us_program_common



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From noreply at github.com  Fri Sep 26 10:57:30 2025
From: noreply at github.com (alexsav815)
Date: Fri, 26 Sep 2025 09:57:30 -0700
Subject: [us-commits] [ehb54/ultrascan3] 036113: [unit test for
 multi-channel case] GMP | 4. EDIT -...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/f83796-036113@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 036113902d7405af0d641ad3afb98b2010cef02f
      https://github.com/ehb54/ultrascan3/commit/036113902d7405af0d641ad3afb98b2010cef02f
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-26 (Fri, 26 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit_main.cpp

  Log Message:
  -----------
  [unit test for multi-channel case] GMP | 4. EDIT -- treat scan exclusion differently for ABDE vs. VELOCITY types (ABDE - usually only last scan remains for each triple, ensured manually; VEL. - based on AProfile's settings beg|nth|end)...



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From noreply at github.com  Fri Sep 26 12:53:57 2025
From: noreply at github.com (aaron-auc)
Date: Fri, 26 Sep 2025 11:53:57 -0700
Subject: [us-commits] [ehb54/ultrascan3] 69b601: PAM for linux password for
 php
Message-ID: <ehb54/ultrascan3/push/refs/heads/master/021924-2e456f@github.com>

  Branch: refs/heads/master
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 69b6016db937a41c6d364bda55101d76f5564bc6
      https://github.com/ehb54/ultrascan3/commit/69b6016db937a41c6d364bda55101d76f5564bc6
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-06-09 (Mon, 09 Jun 2025)

  Changed paths:
    A admin/pam_auth_helper/README.md
    A admin/pam_auth_helper/pam.d/php-helper
    A admin/pam_auth_helper/pam_auth_helper.c
    A admin/pam_auth_helper/pam_auth_test.php

  Log Message:
  -----------
  PAM for linux password for php


  Commit: 22b88019d6a64a92f89f361f6cfd6737cab591d9
      https://github.com/ehb54/ultrascan3/commit/22b88019d6a64a92f89f361f6cfd6737cab591d9
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-06-09 (Mon, 09 Jun 2025)

  Changed paths:
    M admin/pam_auth_helper/README.md

  Log Message:
  -----------
  Update README.md


  Commit: e64cf5274f1d7302ca4582ea2e138b08a870e828
      https://github.com/ehb54/ultrascan3/commit/e64cf5274f1d7302ca4582ea2e138b08a870e828
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-06-09 (Mon, 09 Jun 2025)

  Changed paths:
    A admin/pam_auth_helper/Makefile

  Log Message:
  -----------
  PAM for linux password for php - makefile


  Commit: 56f6b69169ad4e990282f20f3531d347cdca36bf
      https://github.com/ehb54/ultrascan3/commit/56f6b69169ad4e990282f20f3531d347cdca36bf
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    A admin/pam/pam_no_ad/Makefile
    A admin/pam/pam_no_ad/README.md
    A admin/pam/pam_no_ad/files/php
    A admin/pam/pam_no_ad/files/sssd.conf
    R admin/pam_auth_helper/Makefile
    R admin/pam_auth_helper/README.md
    R admin/pam_auth_helper/pam.d/php-helper
    R admin/pam_auth_helper/pam_auth_helper.c
    R admin/pam_auth_helper/pam_auth_test.php

  Log Message:
  -----------
  PAM auth no AD/LDAP, Linux passwords only


  Commit: 5050f341dbde4ea01ba7f0e3aa9862fbb5fbe6b9
      https://github.com/ehb54/ultrascan3/commit/5050f341dbde4ea01ba7f0e3aa9862fbb5fbe6b9
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    M gui/us_csv_loader.cpp
    M gui/us_csv_loader.h

  Log Message:
  -----------
  Merge pull request #226 from ehb54/master

merge master to issue branch


  Commit: b16f0504f2f4404db161c55323d9df63622854fc
      https://github.com/ehb54/ultrascan3/commit/b16f0504f2f4404db161c55323d9df63622854fc
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/README.md

  Log Message:
  -----------
  Update README.md


  Commit: bd0a2263e0e3493aaa08624c81fcbd820f172a1d
      https://github.com/ehb54/ultrascan3/commit/bd0a2263e0e3493aaa08624c81fcbd820f172a1d
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    A admin/pam/pam_no_ad/pam_auth_test.php

  Log Message:
  -----------
  PAM for linux password for php - pam_auth_test.php


  Commit: 1a4ce194b046f388b13ae0c04a5f361478f90700
      https://github.com/ehb54/ultrascan3/commit/1a4ce194b046f388b13ae0c04a5f361478f90700
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/README.md

  Log Message:
  -----------
  Update README.md


  Commit: df89a15dee591af68573b8840c6f78586499c3a3
      https://github.com/ehb54/ultrascan3/commit/df89a15dee591af68573b8840c6f78586499c3a3
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/pam_auth_test.php

  Log Message:
  -----------
  PAM for linux password for php - pam_auth_test.php


  Commit: c65ba3d71581de0a41ee41787e66c4026190dc18
      https://github.com/ehb54/ultrascan3/commit/c65ba3d71581de0a41ee41787e66c4026190dc18
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/Makefile
    A admin/pam/pam_no_ad/files/mariadb
    M admin/pam/pam_no_ad/files/sssd.conf
    A admin/pam/pam_no_ad/files/system-auth-nosss

  Log Message:
  -----------
  pam - updated config


  Commit: 93f3f88fd38b866aad319181f61dc3e4aa8bcfe3
      https://github.com/ehb54/ultrascan3/commit/93f3f88fd38b866aad319181f61dc3e4aa8bcfe3
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/README.md

  Log Message:
  -----------
  pam - updated READEM


  Commit: bb52f3f31f0438cd66c01a5d7e4eb903ce4b37d0
      https://github.com/ehb54/ultrascan3/commit/bb52f3f31f0438cd66c01a5d7e4eb903ce4b37d0
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/README.md

  Log Message:
  -----------
  Update README.md


  Commit: 1eb1eb3811ccfad632482d58ed2a9ba6015609a4
      https://github.com/ehb54/ultrascan3/commit/1eb1eb3811ccfad632482d58ed2a9ba6015609a4
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-06-13 (Fri, 13 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/files/sssd.conf

  Log Message:
  -----------
  remove proxy_fast_switch

sssd.log reports [sssd] [sss_ini_call_validators] (0x0020): [rule/allowed_domain_options]: Attribute 'proxy_fast_switch' is not allowed in section 'domain/local'.


  Commit: 1c7bcff1b439d260af022b29abcf3f0bb17c3983
      https://github.com/ehb54/ultrascan3/commit/1c7bcff1b439d260af022b29abcf3f0bb17c3983
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-06-13 (Fri, 13 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/README.md
    A admin/pam/pam_no_ad/pam_auth_pamtester.php

  Log Message:
  -----------
  issue496 - pamtester testing


  Commit: 7ce6ebcdb8cbd49311441bf7937aba4fec2bffd6
      https://github.com/ehb54/ultrascan3/commit/7ce6ebcdb8cbd49311441bf7937aba4fec2bffd6
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-06-13 (Fri, 13 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/README.md

  Log Message:
  -----------
  Update README.md


  Commit: 2e456f0922765ab66ffb5844fc6ef570a37ce431
      https://github.com/ehb54/ultrascan3/commit/2e456f0922765ab66ffb5844fc6ef570a37ce431
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2025-09-26 (Fri, 26 Sep 2025)

  Changed paths:
    A admin/pam/pam_no_ad/Makefile
    A admin/pam/pam_no_ad/README.md
    A admin/pam/pam_no_ad/files/mariadb
    A admin/pam/pam_no_ad/files/php
    A admin/pam/pam_no_ad/files/sssd.conf
    A admin/pam/pam_no_ad/files/system-auth-nosss
    A admin/pam/pam_no_ad/pam_auth_pamtester.php
    A admin/pam/pam_no_ad/pam_auth_test.php

  Log Message:
  -----------
  Merge pull request #225 from ehb54/ehb54-issue-496

PAM for linux password for php


Compare: https://github.com/ehb54/ultrascan3/compare/021924be498a...2e456f092276

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From noreply at github.com  Fri Sep 26 12:54:25 2025
From: noreply at github.com (aaron-auc)
Date: Fri, 26 Sep 2025 11:54:25 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/ehb54-issue-496/7ce6eb-000000@github.com>

  Branch: refs/heads/ehb54-issue-496
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Fri Sep 26 13:36:13 2025
From: noreply at github.com (alexsav815)
Date: Fri, 26 Sep 2025 12:36:13 -0700
Subject: [us-commits] [ehb54/ultrascan3] 0fa81d: [REstore form -- unit test
 for multi-channel case]...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/036113-0fa81d@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 0fa81d8ac6c3fc80cbfb121038e9a6a0cde634bf
      https://github.com/ehb54/ultrascan3/commit/0fa81d8ac6c3fc80cbfb121038e9a6a0cde634bf
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-26 (Fri, 26 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit_main.cpp

  Log Message:
  -----------
  [REstore form -- unit test for multi-channel case] GMP | 4. EDIT -- treat scan exclusion differently for ABDE vs. VELOCITY types (ABDE - usually only last scan remains for each triple, ensured manually; VEL. - based on AProfile's settings beg|nth|end)...



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From noreply at github.com  Fri Sep 26 18:07:28 2025
From: noreply at github.com (alexsav815)
Date: Fri, 26 Sep 2025 17:07:28 -0700
Subject: [us-commits] [ehb54/ultrascan3] 42b30b: GMP | 6. REPORT -- do not
 display scan exclusion s...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/0fa81d-42b30b@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 42b30b23222d6e9b070861a382ebe34ad77611ab
      https://github.com/ehb54/ultrascan3/commit/42b30b23222d6e9b070861a382ebe34ad77611ab
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-26 (Fri, 26 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP | 6. REPORT -- do not display scan exclusion settings Scan section if optics type not used...



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From noreply at github.com  Sat Sep 27 20:47:36 2025
From: noreply at github.com (Borries Demeler)
Date: Sat, 27 Sep 2025 19:47:36 -0700
Subject: [us-commits] [ehb54/ultrascan3] 154500: us_grid_editor: update the
 program GUI to get the ...
Message-ID: <ehb54/ultrascan3/push/refs/heads/master/2e456f-f286c4@github.com>

  Branch: refs/heads/master
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 154500215bfe391bf9dd7fda43456fe170c3c834
      https://github.com/ehb54/ultrascan3/commit/154500215bfe391bf9dd7fda43456fe170c3c834
  Author: saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-09-26 (Fri, 26 Sep 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: update the program GUI to get the cusotm grid from the users


  Commit: 9f8fa54c2859fc4a8c4f996ef37443963f0e4ab2
      https://github.com/ehb54/ultrascan3/commit/9f8fa54c2859fc4a8c4f996ef37443963f0e4ab2
  Author: saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-09-26 (Fri, 26 Sep 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: add function to parse a grid file


  Commit: f6b215b4f73633db8bee542cefd88da89761620b
      https://github.com/ehb54/ultrascan3/commit/f6b215b4f73633db8bee542cefd88da89761620b
  Author: saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-09-26 (Fri, 26 Sep 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp

  Log Message:
  -----------
  us_grid_editor: save the user grid model locally and on DB


  Commit: 4ec94c4a344d53369ca022d39c166df3b0859490
      https://github.com/ehb54/ultrascan3/commit/4ec94c4a344d53369ca022d39c166df3b0859490
  Author: saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-09-27 (Sat, 27 Sep 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  fixed the issue with resetting to the default after pasrsing the CSV file. Refine the functions to reload the model from DB and local drive


  Commit: f286c4ffff8050ccb898b5446f3915031c6b7585
      https://github.com/ehb54/ultrascan3/commit/f286c4ffff8050ccb898b5446f3915031c6b7585
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-09-27 (Sat, 27 Sep 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  Merge pull request #264 from samo38/issue_563

Issue 563: Custom Grid Program


Compare: https://github.com/ehb54/ultrascan3/compare/2e456f092276...f286c4ffff80

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From noreply at github.com  Sun Sep 28 02:34:35 2025
From: noreply at github.com (Lukas Dobler)
Date: Sun, 28 Sep 2025 01:34:35 -0700
Subject: [us-commits] [ehb54/ultrascan3] bb0aa9: Refactor scan handling in
 `us_xpn_data.cpp` for im...
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_xpn_viewer_timestate/021924-bb0aa9@github.com>

  Branch: refs/heads/lukas/us_xpn_viewer_timestate
  Home:   https://github.com/ehb54/ultrascan3
  Commit: bb0aa9e39a0dbe5f7e27e10da64bf65846b81337
      https://github.com/ehb54/ultrascan3/commit/bb0aa9e39a0dbe5f7e27e10da64bf65846b81337
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-28 (Sun, 28 Sep 2025)

  Changed paths:
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Refactor scan handling in `us_xpn_data.cpp` for improved sorting and speed step calculation

Replaced direct usage of `scanData` with a centralized `scans` vector for consistent access and sorting by time. Updated speed step computation and related logic to utilize the sorted vector, enhancing clarity and maintainability.



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From noreply at github.com  Mon Sep 29 15:38:03 2025
From: noreply at github.com (alexsav815)
Date: Mon, 29 Sep 2025 14:38:03 -0700
Subject: [us-commits] [ehb54/ultrascan3] e3282f: GMP | 6. REPORT -- do not
 specify details on Scan ...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/42b30b-e3282f@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: e3282fcfa778c046776d3abf2a718a9617230b4d
      https://github.com/ehb54/ultrascan3/commit/e3282fcfa778c046776d3abf2a718a9617230b4d
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-29 (Mon, 29 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  GMP | 6. REPORT -- do not specify details on Scan exlusions of there were no any...



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From noreply at github.com  Mon Sep 29 15:44:21 2025
From: noreply at github.com (alexsav815)
Date: Mon, 29 Sep 2025 14:44:21 -0700
Subject: [us-commits] [ehb54/ultrascan3] 8a112b: [1]GMP | 6. REPORT -- do
 not specify details on Sc...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/e3282f-8a112b@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 8a112ba9e5ae7859d58f117c486f2e52cbba2899
      https://github.com/ehb54/ultrascan3/commit/8a112ba9e5ae7859d58f117c486f2e52cbba2899
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-29 (Mon, 29 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [1]GMP | 6. REPORT -- do not specify details on Scan exlusions of there were no any...



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From noreply at github.com  Mon Sep 29 16:02:00 2025
From: noreply at github.com (alexsav815)
Date: Mon, 29 Sep 2025 15:02:00 -0700
Subject: [us-commits] [ehb54/ultrascan3] 69b601: PAM for linux password for
 php
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/8a112b-d1287d@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 69b6016db937a41c6d364bda55101d76f5564bc6
      https://github.com/ehb54/ultrascan3/commit/69b6016db937a41c6d364bda55101d76f5564bc6
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-06-09 (Mon, 09 Jun 2025)

  Changed paths:
    A admin/pam_auth_helper/README.md
    A admin/pam_auth_helper/pam.d/php-helper
    A admin/pam_auth_helper/pam_auth_helper.c
    A admin/pam_auth_helper/pam_auth_test.php

  Log Message:
  -----------
  PAM for linux password for php


  Commit: 22b88019d6a64a92f89f361f6cfd6737cab591d9
      https://github.com/ehb54/ultrascan3/commit/22b88019d6a64a92f89f361f6cfd6737cab591d9
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-06-09 (Mon, 09 Jun 2025)

  Changed paths:
    M admin/pam_auth_helper/README.md

  Log Message:
  -----------
  Update README.md


  Commit: e64cf5274f1d7302ca4582ea2e138b08a870e828
      https://github.com/ehb54/ultrascan3/commit/e64cf5274f1d7302ca4582ea2e138b08a870e828
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-06-09 (Mon, 09 Jun 2025)

  Changed paths:
    A admin/pam_auth_helper/Makefile

  Log Message:
  -----------
  PAM for linux password for php - makefile


  Commit: 56f6b69169ad4e990282f20f3531d347cdca36bf
      https://github.com/ehb54/ultrascan3/commit/56f6b69169ad4e990282f20f3531d347cdca36bf
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    A admin/pam/pam_no_ad/Makefile
    A admin/pam/pam_no_ad/README.md
    A admin/pam/pam_no_ad/files/php
    A admin/pam/pam_no_ad/files/sssd.conf
    R admin/pam_auth_helper/Makefile
    R admin/pam_auth_helper/README.md
    R admin/pam_auth_helper/pam.d/php-helper
    R admin/pam_auth_helper/pam_auth_helper.c
    R admin/pam_auth_helper/pam_auth_test.php

  Log Message:
  -----------
  PAM auth no AD/LDAP, Linux passwords only


  Commit: 5050f341dbde4ea01ba7f0e3aa9862fbb5fbe6b9
      https://github.com/ehb54/ultrascan3/commit/5050f341dbde4ea01ba7f0e3aa9862fbb5fbe6b9
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    M gui/us_csv_loader.cpp
    M gui/us_csv_loader.h

  Log Message:
  -----------
  Merge pull request #226 from ehb54/master

merge master to issue branch


  Commit: b16f0504f2f4404db161c55323d9df63622854fc
      https://github.com/ehb54/ultrascan3/commit/b16f0504f2f4404db161c55323d9df63622854fc
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/README.md

  Log Message:
  -----------
  Update README.md


  Commit: bd0a2263e0e3493aaa08624c81fcbd820f172a1d
      https://github.com/ehb54/ultrascan3/commit/bd0a2263e0e3493aaa08624c81fcbd820f172a1d
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    A admin/pam/pam_no_ad/pam_auth_test.php

  Log Message:
  -----------
  PAM for linux password for php - pam_auth_test.php


  Commit: 1a4ce194b046f388b13ae0c04a5f361478f90700
      https://github.com/ehb54/ultrascan3/commit/1a4ce194b046f388b13ae0c04a5f361478f90700
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/README.md

  Log Message:
  -----------
  Update README.md


  Commit: df89a15dee591af68573b8840c6f78586499c3a3
      https://github.com/ehb54/ultrascan3/commit/df89a15dee591af68573b8840c6f78586499c3a3
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/pam_auth_test.php

  Log Message:
  -----------
  PAM for linux password for php - pam_auth_test.php


  Commit: c65ba3d71581de0a41ee41787e66c4026190dc18
      https://github.com/ehb54/ultrascan3/commit/c65ba3d71581de0a41ee41787e66c4026190dc18
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/Makefile
    A admin/pam/pam_no_ad/files/mariadb
    M admin/pam/pam_no_ad/files/sssd.conf
    A admin/pam/pam_no_ad/files/system-auth-nosss

  Log Message:
  -----------
  pam - updated config


  Commit: 93f3f88fd38b866aad319181f61dc3e4aa8bcfe3
      https://github.com/ehb54/ultrascan3/commit/93f3f88fd38b866aad319181f61dc3e4aa8bcfe3
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/README.md

  Log Message:
  -----------
  pam - updated READEM


  Commit: bb52f3f31f0438cd66c01a5d7e4eb903ce4b37d0
      https://github.com/ehb54/ultrascan3/commit/bb52f3f31f0438cd66c01a5d7e4eb903ce4b37d0
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/README.md

  Log Message:
  -----------
  Update README.md


  Commit: 1eb1eb3811ccfad632482d58ed2a9ba6015609a4
      https://github.com/ehb54/ultrascan3/commit/1eb1eb3811ccfad632482d58ed2a9ba6015609a4
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-06-13 (Fri, 13 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/files/sssd.conf

  Log Message:
  -----------
  remove proxy_fast_switch

sssd.log reports [sssd] [sss_ini_call_validators] (0x0020): [rule/allowed_domain_options]: Attribute 'proxy_fast_switch' is not allowed in section 'domain/local'.


  Commit: 1c7bcff1b439d260af022b29abcf3f0bb17c3983
      https://github.com/ehb54/ultrascan3/commit/1c7bcff1b439d260af022b29abcf3f0bb17c3983
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-06-13 (Fri, 13 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/README.md
    A admin/pam/pam_no_ad/pam_auth_pamtester.php

  Log Message:
  -----------
  issue496 - pamtester testing


  Commit: 7ce6ebcdb8cbd49311441bf7937aba4fec2bffd6
      https://github.com/ehb54/ultrascan3/commit/7ce6ebcdb8cbd49311441bf7937aba4fec2bffd6
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-06-13 (Fri, 13 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/README.md

  Log Message:
  -----------
  Update README.md


  Commit: 52d2e12f19167416a58de29b71876a11edd2caf6
      https://github.com/ehb54/ultrascan3/commit/52d2e12f19167416a58de29b71876a11edd2caf6
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-12 (Fri, 12 Sep 2025)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M utils/us_ana_profile.cpp
    M utils/us_ana_profile.h

  Log Message:
  -----------
  GMP | 1. EXP.: 8.Aprofile -- [Add model ID to framework]custom grid implementation...


  Commit: 5c1814ae911784afd312e835594b931008d8bed4
      https://github.com/ehb54/ultrascan3/commit/5c1814ae911784afd312e835594b931008d8bed4
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-12 (Fri, 12 Sep 2025)

  Changed paths:
    M utils/us_ana_profile.cpp

  Log Message:
  -----------
  [1]GMP | 1. EXP.: 8.Aprofile -- [Add model ID to framework]custom grid implementation...


  Commit: 4e5d8b4cc07c2a5c5065886cf61e61c76fafffad
      https://github.com/ehb54/ultrascan3/commit/4e5d8b4cc07c2a5c5065886cf61e61c76fafffad
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-14 (Sun, 14 Sep 2025)

  Changed paths:
    M utils/us_ana_profile.cpp

  Log Message:
  -----------
  [2]GMP | 1. EXP.: 8.Aprofile -- [Add model ID to framework]custom grid implementation...ush


  Commit: 747e42f7732dc906533cbd0cd954e81e3e565d98
      https://github.com/ehb54/ultrascan3/commit/747e42f7732dc906533cbd0cd954e81e3e565d98
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.cpp

  Log Message:
  -----------
  GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...


  Commit: 0337b97ebfe25072971b60c29b4a2d390667da17
      https://github.com/ehb54/ultrascan3/commit/0337b97ebfe25072971b60c29b4a2d390667da17
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M programs/us_fit_meniscus/us_fit_meniscus_main.cpp

  Log Message:
  -----------
  [test1]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...


  Commit: 77987890dfd45f62499deda691795b2e88ed4c26
      https://github.com/ehb54/ultrascan3/commit/77987890dfd45f62499deda691795b2e88ed4c26
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M programs/us_fit_meniscus/us_fit_meniscus_main.cpp

  Log Message:
  -----------
  [test2]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...


  Commit: f0d642fb0b9364e641fb3119b5eb5f3d9a70d908
      https://github.com/ehb54/ultrascan3/commit/f0d642fb0b9364e641fb3119b5eb5f3d9a70d908
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.cpp

  Log Message:
  -----------
  [test4]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...


  Commit: cabec77d85cef315e34c7a7362b56b19524d3972
      https://github.com/ehb54/ultrascan3/commit/cabec77d85cef315e34c7a7362b56b19524d3972
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [test5]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...


  Commit: ffb3fb9dc2da42d44a60eaefd9a678aea956a204
      https://github.com/ehb54/ultrascan3/commit/ffb3fb9dc2da42d44a60eaefd9a678aea956a204
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M gui/us_model_loader.cpp

  Log Message:
  -----------
  [test6]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...


  Commit: 8373d17ba7f453a11426f8935218990b8e317f51
      https://github.com/ehb54/ultrascan3/commit/8373d17ba7f453a11426f8935218990b8e317f51
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [test77]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...


  Commit: d29359d571538fdcdba340546c1ace762f2585f7
      https://github.com/ehb54/ultrascan3/commit/d29359d571538fdcdba340546c1ace762f2585f7
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h

  Log Message:
  -----------
  Add function to check acceleration rate and first scan validity

Introduced `check_acceleration()` in `US_AstfemMath` to validate acceleration rates and detect potential issues with first scan timing. Enhanced error reporting for experiments with low acceleration or scans during acceleration phase. Updated header file accordingly.


  Commit: 00b9132e2f4a788b4b056a3277c0b52a4f0adec4
      https://github.com/ehb54/ultrascan3/commit/00b9132e2f4a788b4b056a3277c0b52a4f0adec4
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_2dsa/us_2dsa.cpp

  Log Message:
  -----------
  Refactor speed step validation logic and integrate `check_acceleration()`

Replaced manual speed step validation with the `check_acceleration()` function from `US_AstfemMath`, improving modularity and error detection. Enhanced message box handling for better user feedback on scan timing and acceleration issues.


  Commit: b3b5449d21badd09a6c72964db5f09a1c6ac22ab
      https://github.com/ehb54/ultrascan3/commit/b3b5449d21badd09a6c72964db5f09a1c6ac22ab
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp

  Log Message:
  -----------
  Replace manual acceleration checks with `check_acceleration()` helper

Streamlined acceleration validation using `US_AstfemMath::check_acceleration()` for improved modularity, reduced code redundancy, and enhanced error handling. Updated message box logic to display detailed user feedback when issues are detected.


  Commit: e7990f3902c576ee20053e446ae508e1d193ef29
      https://github.com/ehb54/ultrascan3/commit/e7990f3902c576ee20053e446ae508e1d193ef29
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_convert/us_convert_gui.cpp

  Log Message:
  -----------
  Refactor message box logic and integrate updated `check_acceleration()` validation

Simplified acceleration validation by utilizing `US_AstfemMath::check_acceleration()`. Streamlined message box handling to improve readability and user feedback for experiments with acceleration issues.


  Commit: 31e99caf2928581de4943b1119be73a9436d1447
      https://github.com/ehb54/ultrascan3/commit/31e99caf2928581de4943b1119be73a9436d1447
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  Remove obsolete low acceleration check and associated UI logic

Eliminated redundant low acceleration validation and message box logic from `us_experiment_gui_optima.cpp`, simplifying the code and improving maintainability.


  Commit: 91d63509d1f79d315225eff1b2d7fb5b6115ecc3
      https://github.com/ehb54/ultrascan3/commit/91d63509d1f79d315225eff1b2d7fb5b6115ecc3
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_fematch/us_fematch.cpp

  Log Message:
  -----------
  Replace manual acceleration UI logic with `check_acceleration()` integration

Streamlined acceleration validation by utilizing `US_AstfemMath::check_acceleration()`. Removed redundant manual checks and simplified message box handling for improved user feedback and code maintainability.


  Commit: a460bef08c775745062f6fe891f2893e2002d117
      https://github.com/ehb54/ultrascan3/commit/a460bef08c775745062f6fe891f2893e2002d117
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_mpi_analysis/us_mpi_analysis.cpp

  Log Message:
  -----------
  Replace manual acceleration UI logic with `check_acceleration()` integration

Streamlined acceleration validation by utilizing `US_AstfemMath::check_acceleration()`. Removed redundant manual checks and simplified message box handling for improved user feedback and code maintainability.


  Commit: 009aba4948371da1e6e6f05f46f5a11c092b324c
      https://github.com/ehb54/ultrascan3/commit/009aba4948371da1e6e6f05f46f5a11c092b324c
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  Integrate `check_acceleration()` in `us_reporter_gmp.cpp`

Replaced manual acceleration checks with `US_AstfemMath::check_acceleration()`, streamlining validation and improving error reporting with enhanced message box logic. Removed redundant code for better maintainability.


  Commit: bee67ad94ebbc7c9821dc0aad18e6bce737b4568
      https://github.com/ehb54/ultrascan3/commit/bee67ad94ebbc7c9821dc0aad18e6bce737b4568
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Update utils/us_astfem_math.cpp

Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com>


  Commit: 227d32eb57b85946a3d39e4643719738eeddabb5
      https://github.com/ehb54/ultrascan3/commit/227d32eb57b85946a3d39e4643719738eeddabb5
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Update utils/us_astfem_math.cpp

Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com>


  Commit: fa44532656ec9a8863fe76d5878356f412f827fb
      https://github.com/ehb54/ultrascan3/commit/fa44532656ec9a8863fe76d5878356f412f827fb
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp

  Log Message:
  -----------
  Integrate `check_acceleration()` in `us_vhw_enhanced.cpp`

Added validation for acceleration profiles using `US_AstfemMath::check_acceleration()`. Enhanced message box logic for user feedback and streamlined error handling for scan data issues.


  Commit: 3b4ade0ff450252975099029f53fae26589346a6
      https://github.com/ehb54/ultrascan3/commit/3b4ade0ff450252975099029f53fae26589346a6
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M gui/us_analysis_base2.cpp

  Log Message:
  -----------
  Integrate `check_acceleration()` in `us_analysis_base2.cpp` in order to add it to us_second_moment, us_dcdt, us_pcsa

Added acceleration validation leveraging `US_AstfemMath::check_acceleration()`. Enhanced message box logic for user feedback and streamlined error handling for scan data issues.


  Commit: 9fb462a87d5cfef990e583e0aa8dda091841052b
      https://github.com/ehb54/ultrascan3/commit/9fb462a87d5cfef990e583e0aa8dda091841052b
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_fematch/us_resplot_fem.cpp

  Log Message:
  -----------
  [debug]GMP | 6. REPORT: CG -- ...


  Commit: 42982afb88ddce0d00ece507d399d59735905d72
      https://github.com/ehb54/ultrascan3/commit/42982afb88ddce0d00ece507d399d59735905d72
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug1]GMP | 6. REPORT: CG -- ...


  Commit: 493798b230e227ab68985ca50882c28058efd160
      https://github.com/ehb54/ultrascan3/commit/493798b230e227ab68985ca50882c28058efd160
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug2]GMP | 6. REPORT: CG -- ...


  Commit: a468cc16f534c3769ca2b90b209848d226d596fc
      https://github.com/ehb54/ultrascan3/commit/a468cc16f534c3769ca2b90b209848d226d596fc
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug3]GMP | 6. REPORT: CG -- ...


  Commit: 35851638d1fc647e0bd2dd3861e329898ac2fec1
      https://github.com/ehb54/ultrascan3/commit/35851638d1fc647e0bd2dd3861e329898ac2fec1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug4]GMP | 6. REPORT: CG -- ...


  Commit: 8de77f30a55f3d955960b24d9fc654f85a643da1
      https://github.com/ehb54/ultrascan3/commit/8de77f30a55f3d955960b24d9fc654f85a643da1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug5]GMP | 6. REPORT: CG -- ...


  Commit: 116f06f0e3cb97e592455a896ea074987b1d687d
      https://github.com/ehb54/ultrascan3/commit/116f06f0e3cb97e592455a896ea074987b1d687d
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug5]GMP | 6. REPORT: CG -- ...


  Commit: ada9fc194b6107aa9234582f328928f990f49ab8
      https://github.com/ehb54/ultrascan3/commit/ada9fc194b6107aa9234582f328928f990f49ab8
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug7]GMP | 6. REPORT: CG -- ...


  Commit: 803cac4e0551cf55251878109066602030536089
      https://github.com/ehb54/ultrascan3/commit/803cac4e0551cf55251878109066602030536089
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M programs/us_fematch/us_fematch.cpp

  Log Message:
  -----------
  Integrate `check_acceleration()` in `us_fematch.cpp`

Replaced manual acceleration validation with `US_AstfemMath::check_acceleration()`. Improved error handling and message box logic to provide better user feedback for scan data issues.


  Commit: 6147e952e75e949c7809a98a21beb2107f87e395
      https://github.com/ehb54/ultrascan3/commit/6147e952e75e949c7809a98a21beb2107f87e395
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.h

  Log Message:
  -----------
  Clarify `check_acceleration()` documentation for return format and behavior


  Commit: d976a8685de0adc6d272b35cec81016a34e4a38e
      https://github.com/ehb54/ultrascan3/commit/d976a8685de0adc6d272b35cec81016a34e4a38e
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Refactor `check_acceleration()` logic for improved readability and robustness

Simplified variable naming, added guards for edge cases, and clarified acceleration rate and time checks. Enhanced error messages to provide more detailed user feedback.


  Commit: 6c6ba45b05dacb1c10cf803c959c2b9b4bdbe14c
      https://github.com/ehb54/ultrascan3/commit/6c6ba45b05dacb1c10cf803c959c2b9b4bdbe14c
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp

  Log Message:
  -----------
  Fix incorrect dereference of `edata` in `check_acceleration()` call


  Commit: 103683b0b42e6d3ee23a86bb3749b3cc0aa08e11
      https://github.com/ehb54/ultrascan3/commit/103683b0b42e6d3ee23a86bb3749b3cc0aa08e11
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  Fix incorrect dereference of `edata` in `check_acceleration()` call within `us_reporter_gmp.cpp`


  Commit: 9d51aa93fbdb6f1a84076e3ddd128210f701d29d
      https://github.com/ehb54/ultrascan3/commit/9d51aa93fbdb6f1a84076e3ddd128210f701d29d
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-19 (Fri, 19 Sep 2025)

  Changed paths:
    M gui/us_analysis_base2.cpp

  Log Message:
  -----------
  Refactor speed profile and time state handling in `us_analysis_base2.cpp`

Refactored speed profile processing to improve clarity and maintainability. Added enhanced logic to handle time state files and initialization of simulation parameters. Simplified acceleration checks using `US_AstfemMath::check_acceleration()`.


  Commit: 1f7336dfecb15d81c71c88e6922196f0137c6431
      https://github.com/ehb54/ultrascan3/commit/1f7336dfecb15d81c71c88e6922196f0137c6431
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-19 (Fri, 19 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Adjust `kT1Factor` initialization and format specifiers in error messages

Revised `kT1Factor` to use explicit calculation for enhanced clarity. Updated float formatting in error messages from 'g' to 'f' for consistent precision in user feedback.


  Commit: b29fc424db0d4aa7e5e60d830be2fbadb73666e1
      https://github.com/ehb54/ultrascan3/commit/b29fc424db0d4aa7e5e60d830be2fbadb73666e1
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-19 (Fri, 19 Sep 2025)

  Changed paths:
    M programs/us_2dsa/us_2dsa.cpp

  Log Message:
  -----------
  Remove manual `check_acceleration()` validation in `us_2dsa.cpp`

Eliminated redundant acceleration validation logic and message box handling. Streamlined by removing unused `US_AstfemMath::check_acceleration()` integration.


  Commit: 626668c35b1cdd774c6ba744a7cd473feb548602
      https://github.com/ehb54/ultrascan3/commit/626668c35b1cdd774c6ba744a7cd473feb548602
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-19 (Fri, 19 Sep 2025)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_fematch/us_fematch.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  Simplify `check_results` bounds checks in message box handling across programs


  Commit: b21a559ee9e33fed395a785dbaa8f14fe58e9831
      https://github.com/ehb54/ultrascan3/commit/b21a559ee9e33fed395a785dbaa8f14fe58e9831
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-19 (Fri, 19 Sep 2025)

  Changed paths:
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp

  Log Message:
  -----------
  Remove unused `check_acceleration` logic and disable `update(0)` call in `us_vhw_enhanced.cpp` to prevent unnecessary update cycle


  Commit: e49834c3a05a6ffbc730f24be564d3c319a06d2a
      https://github.com/ehb54/ultrascan3/commit/e49834c3a05a6ffbc730f24be564d3c319a06d2a
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h

  Log Message:
  -----------
  Add `calc_omega2t` functionality to `US_AstfemMath` for omega2t calculations

Introduced a new method `calc_omega2t` in `US_AstfemMath` to calculate omega2t values based on speed profiles, acceleration rates, and time parameters. Enhanced flexibility for processing speed step data.


  Commit: 046484c8433d54042b223de7aebd2b793424b6a9
      https://github.com/ehb54/ultrascan3/commit/046484c8433d54042b223de7aebd2b793424b6a9
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M programs/us_astfem_sim/us_astfem_sim.cpp

  Log Message:
  -----------
  Refactor speed step simulation logic in `us_astfem_sim.cpp`

Streamlined speed profile processing by removing redundant legacy logic and incorporating `calc_omega2t` for precise omega2t and time grid calculations. Enhanced clarity and maintainability of simulation loop.


  Commit: df769b270aea86fedc2fb0da2875e71741354606
      https://github.com/ehb54/ultrascan3/commit/df769b270aea86fedc2fb0da2875e71741354606
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M gui/us_analysis_base2.cpp
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_fematch/us_fematch.cpp
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h

  Log Message:
  -----------
  Merge pull request #262 from ehb54/lukas/bad-timestate

Bad timestate warnings


  Commit: 021924be498aba94508063128ff7d169d1d6c80c
      https://github.com/ehb54/ultrascan3/commit/021924be498aba94508063128ff7d169d1d6c80c
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-09-23 (Tue, 23 Sep 2025)

  Changed paths:
    M gui/us_model_loader.cpp
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_fematch/us_resplot_fem.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.cpp
    M programs/us_fit_meniscus/us_fit_meniscus_main.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M utils/us_ana_profile.cpp
    M utils/us_ana_profile.h

  Log Message:
  -----------
  Merge pull request #261 from ehb54/alexey-dev-issue553

Alexey dev issue553: GMP-Custom grid: pass also CG-modelID throught the framework


  Commit: 2e456f0922765ab66ffb5844fc6ef570a37ce431
      https://github.com/ehb54/ultrascan3/commit/2e456f0922765ab66ffb5844fc6ef570a37ce431
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2025-09-26 (Fri, 26 Sep 2025)

  Changed paths:
    A admin/pam/pam_no_ad/Makefile
    A admin/pam/pam_no_ad/README.md
    A admin/pam/pam_no_ad/files/mariadb
    A admin/pam/pam_no_ad/files/php
    A admin/pam/pam_no_ad/files/sssd.conf
    A admin/pam/pam_no_ad/files/system-auth-nosss
    A admin/pam/pam_no_ad/pam_auth_pamtester.php
    A admin/pam/pam_no_ad/pam_auth_test.php

  Log Message:
  -----------
  Merge pull request #225 from ehb54/ehb54-issue-496

PAM for linux password for php


  Commit: 154500215bfe391bf9dd7fda43456fe170c3c834
      https://github.com/ehb54/ultrascan3/commit/154500215bfe391bf9dd7fda43456fe170c3c834
  Author: saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-09-26 (Fri, 26 Sep 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: update the program GUI to get the cusotm grid from the users


  Commit: 9f8fa54c2859fc4a8c4f996ef37443963f0e4ab2
      https://github.com/ehb54/ultrascan3/commit/9f8fa54c2859fc4a8c4f996ef37443963f0e4ab2
  Author: saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-09-26 (Fri, 26 Sep 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: add function to parse a grid file


  Commit: f6b215b4f73633db8bee542cefd88da89761620b
      https://github.com/ehb54/ultrascan3/commit/f6b215b4f73633db8bee542cefd88da89761620b
  Author: saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-09-26 (Fri, 26 Sep 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp

  Log Message:
  -----------
  us_grid_editor: save the user grid model locally and on DB


  Commit: 4ec94c4a344d53369ca022d39c166df3b0859490
      https://github.com/ehb54/ultrascan3/commit/4ec94c4a344d53369ca022d39c166df3b0859490
  Author: saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-09-27 (Sat, 27 Sep 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  fixed the issue with resetting to the default after pasrsing the CSV file. Refine the functions to reload the model from DB and local drive


  Commit: f286c4ffff8050ccb898b5446f3915031c6b7585
      https://github.com/ehb54/ultrascan3/commit/f286c4ffff8050ccb898b5446f3915031c6b7585
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-09-27 (Sat, 27 Sep 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  Merge pull request #264 from samo38/issue_563

Issue 563: Custom Grid Program


  Commit: d1287da6bdde6dcb79acc019617ea24b5d93d410
      https://github.com/ehb54/ultrascan3/commit/d1287da6bdde6dcb79acc019617ea24b5d93d410
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-29 (Mon, 29 Sep 2025)

  Changed paths:
    A admin/pam/pam_no_ad/Makefile
    A admin/pam/pam_no_ad/README.md
    A admin/pam/pam_no_ad/files/mariadb
    A admin/pam/pam_no_ad/files/php
    A admin/pam/pam_no_ad/files/sssd.conf
    A admin/pam/pam_no_ad/files/system-auth-nosss
    A admin/pam/pam_no_ad/pam_auth_pamtester.php
    A admin/pam/pam_no_ad/pam_auth_test.php
    M gui/us_analysis_base2.cpp
    M gui/us_model_loader.cpp
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_fematch/us_fematch.cpp
    M programs/us_fematch/us_resplot_fem.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.cpp
    M programs/us_fit_meniscus/us_fit_meniscus_main.cpp
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
    M utils/us_ana_profile.cpp
    M utils/us_ana_profile.h
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h

  Log Message:
  -----------
  Merge pull request #265 from ehb54/master

add master


Compare: https://github.com/ehb54/ultrascan3/compare/8a112ba9e5ae...d1287da6bdde

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From noreply at github.com  Mon Sep 29 16:25:39 2025
From: noreply at github.com (alexsav815)
Date: Mon, 29 Sep 2025 15:25:39 -0700
Subject: [us-commits] [ehb54/ultrascan3] 8dff35: [2]GMP | 6. REPORT -- do
 not specify details on Sc...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/d1287d-8dff35@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 8dff3550c25c2827799de8e3f245f1f34a9044ab
      https://github.com/ehb54/ultrascan3/commit/8dff3550c25c2827799de8e3f245f1f34a9044ab
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-29 (Mon, 29 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  [2]GMP | 6. REPORT -- do not specify details on Scan exlusions of there were no any...



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From noreply at github.com  Mon Sep 29 17:56:00 2025
From: noreply at github.com (ehb54)
Date: Mon, 29 Sep 2025 16:56:00 -0700
Subject: [us-commits] [ehb54/ultrascan3] 0f876f: prevent libc.so from being
 included in linux packages
Message-ID: <ehb54/ultrascan3/push/refs/heads/ehb-issue-565/000000-0f876f@github.com>

  Branch: refs/heads/ehb-issue-565
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 0f876fc415d19c3f560858304208b941c863dbc1
      https://github.com/ehb54/ultrascan3/commit/0f876fc415d19c3f560858304208b941c863dbc1
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-09-29 (Mon, 29 Sep 2025)

  Changed paths:
    M admin/release/linux.pl

  Log Message:
  -----------
  prevent libc.so from being included in linux packages



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From noreply at github.com  Mon Sep 29 19:21:36 2025
From: noreply at github.com (ehb54)
Date: Mon, 29 Sep 2025 18:21:36 -0700
Subject: [us-commits] [ehb54/ultrascan3] 939ab2: redhat 9 variants build
 release pkg - wip
Message-ID: <ehb54/ultrascan3/push/refs/heads/ehb-issue-565/0f876f-939ab2@github.com>

  Branch: refs/heads/ehb-issue-565
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 939ab2b948c6976a54e5690d1a245c4dfe997cf3
      https://github.com/ehb54/ultrascan3/commit/939ab2b948c6976a54e5690d1a245c4dfe997cf3
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-09-30 (Tue, 30 Sep 2025)

  Changed paths:
    M admin/release/buildpkg.pl
    A admin/release/fixarchive.pl
    M admin/release/redhat/Dockerfile

  Log Message:
  -----------
  redhat 9 variants build release pkg - wip



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From noreply at github.com  Tue Sep 30 13:59:32 2025
From: noreply at github.com (alexsav815)
Date: Tue, 30 Sep 2025 12:59:32 -0700
Subject: [us-commits] [ehb54/ultrascan3] d927f1: GMP | 1.
 EXP.:APorile:ScanExcls. -- do not allow r...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/8dff35-d927f1@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: d927f1c7acffd7436189c83726111d960cbd1e2d
      https://github.com/ehb54/ultrascan3/commit/d927f1c7acffd7436189c83726111d960cbd1e2d
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-30 (Tue, 30 Sep 2025)

  Changed paths:
    M gui/us_scan_excl_gui.cpp

  Log Message:
  -----------
  GMP | 1. EXP.:APorile:ScanExcls. -- do not allow remainig scans to be less than 3 per channel;restore otherwise...



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From noreply at github.com  Tue Sep 30 16:01:43 2025
From: noreply at github.com (alexsav815)
Date: Tue, 30 Sep 2025 15:01:43 -0700
Subject: [us-commits] [ehb54/ultrascan3] 4c3a97: GMP | 1.
 EXP.:APorile:ScanExcls. -- [Modified logi...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/d927f1-4c3a97@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 4c3a97f136b46591a7381b85fb726ea2fb87f7f2
      https://github.com/ehb54/ultrascan3/commit/4c3a97f136b46591a7381b85fb726ea2fb87f7f2
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-30 (Tue, 30 Sep 2025)

  Changed paths:
    M gui/us_scan_excl_gui.cpp
    M gui/us_scan_excl_gui.h

  Log Message:
  -----------
  GMP | 1. EXP.:APorile:ScanExcls. -- [Modified logic for--] do not allow remainig scans to be less than 3 per channel;restore otherwise...



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From noreply at github.com  Tue Sep 30 16:05:54 2025
From: noreply at github.com (alexsav815)
Date: Tue, 30 Sep 2025 15:05:54 -0700
Subject: [us-commits] [ehb54/ultrascan3] 7c65e1: [1]GMP | 1.
 EXP.:APorile:ScanExcls. -- [Modified l...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/4c3a97-7c65e1@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 7c65e196caeaf47f46d74fe305d0dec5c3f6f4e1
      https://github.com/ehb54/ultrascan3/commit/7c65e196caeaf47f46d74fe305d0dec5c3f6f4e1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-30 (Tue, 30 Sep 2025)

  Changed paths:
    M gui/us_scan_excl_gui.cpp

  Log Message:
  -----------
  [1]GMP | 1. EXP.:APorile:ScanExcls. -- [Modified logic for--] do not allow remainig scans to be less than 3 per channel;restore otherwise...



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From noreply at github.com  Tue Sep 30 16:58:00 2025
From: noreply at github.com (alexsav815)
Date: Tue, 30 Sep 2025 15:58:00 -0700
Subject: [us-commits] [ehb54/ultrascan3] 07f7d5: GMP | 1.
 EXP.:APorile:ScanExcls. -- backward compa...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/7c65e1-07f7d5@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 07f7d5c89032aa8dac1c13fe611e51d8e076cfde
      https://github.com/ehb54/ultrascan3/commit/07f7d5c89032aa8dac1c13fe611e51d8e076cfde
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-30 (Tue, 30 Sep 2025)

  Changed paths:
    M gui/us_scan_excl_gui.cpp

  Log Message:
  -----------
  GMP | 1. EXP.:APorile:ScanExcls. -- backward compatibility with older protocols with no nth scan excl. settings...



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From noreply at github.com  Tue Sep 30 17:04:29 2025
From: noreply at github.com (alexsav815)
Date: Tue, 30 Sep 2025 16:04:29 -0700
Subject: [us-commits] [ehb54/ultrascan3] 232008: [1]GMP | 1.
 EXP.:APorile:ScanExcls. -- backward co...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue556/07f7d5-232008@github.com>

  Branch: refs/heads/alexey-dev-issue556
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 232008ddbb42fa37d28890542961579241726f13
      https://github.com/ehb54/ultrascan3/commit/232008ddbb42fa37d28890542961579241726f13
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-30 (Tue, 30 Sep 2025)

  Changed paths:
    M gui/us_scan_excl_gui.cpp

  Log Message:
  -----------
  [1]GMP | 1. EXP.:APorile:ScanExcls. -- backward compatibility with older protocols with no nth scan excl. settings...



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