From noreply at github.com Thu Apr 2 13:49:52 2026 From: noreply at github.com (alexsav815) Date: Thu, 02 Apr 2026 12:49:52 -0700 Subject: [us-commits] [ehb54/ultrascan3] 82d4d1: GMP-ABDE -- 4. EDIT: ask user if only last scan wa... Message-ID: Branch: refs/heads/alexey-dev-issue792 Home: https://github.com/ehb54/ultrascan3 Commit: 82d4d191eb9afe4cf103b3792c6730f51eb8bafa https://github.com/ehb54/ultrascan3/commit/82d4d191eb9afe4cf103b3792c6730f51eb8bafa Author: alexsav815 Date: 2026-04-02 (Thu, 02 Apr 2026) Changed paths: M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h Log Message: ----------- GMP-ABDE -- 4. EDIT: ask user if only last scan was selected for each channel before accepting new edit parameters... To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Thu Apr 2 16:26:50 2026 From: noreply at github.com (alexsav815) Date: Thu, 02 Apr 2026 15:26:50 -0700 Subject: [us-commits] [ehb54/ultrascan3] b1fbfb: GMP-dataDisk -- enable centerpiece selection in Ce... Message-ID: Branch: refs/heads/main Home: https://github.com/ehb54/ultrascan3 Commit: b1fbfbcbd47cd296b70ccd6ac9178c4efd6b4a4e https://github.com/ehb54/ultrascan3/commit/b1fbfbcbd47cd296b70ccd6ac9178c4efd6b4a4e Author: alexsav815 Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h Log Message: ----------- GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk... Commit: a3b6b6a58f4f1d94a9268cc04a014d3ce1a1471e https://github.com/ehb54/ultrascan3/commit/a3b6b6a58f4f1d94a9268cc04a014d3ce1a1471e Author: alexsav815 Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp Log Message: ----------- [1]GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk... Commit: 992f15191ea67cf8c4dc85736429ab5939967d2f https://github.com/ehb54/ultrascan3/commit/992f15191ea67cf8c4dc85736429ab5939967d2f Author: alexsav815 Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp Log Message: ----------- [2]GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk... Commit: 50c4d0f4452a8f5f8052b4e63ae06abb11f8fe89 https://github.com/ehb54/ultrascan3/commit/50c4d0f4452a8f5f8052b4e63ae06abb11f8fe89 Author: alexsav815 Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp Log Message: ----------- [3]GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk... Commit: abe431ae514b67270d74e84b599ef069673c1164 https://github.com/ehb54/ultrascan3/commit/abe431ae514b67270d74e84b599ef069673c1164 Author: alexsav815 Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h Log Message: ----------- GMP-ABDE -- 4. EDIT points addressed for ticket #792... Commit: b1c5c0de414d093440081fca1a975a4e1118a9d1 https://github.com/ehb54/ultrascan3/commit/b1c5c0de414d093440081fca1a975a4e1118a9d1 Author: alexsav815 Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- [1]GMP-ABDE -- 4. EDIT points addressed for ticket #792... Commit: c53782335d3f1e5fc4fc2ea6f97ee3d64c79389b https://github.com/ehb54/ultrascan3/commit/c53782335d3f1e5fc4fc2ea6f97ee3d64c79389b Author: alexsav815 Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- [2]GMP-ABDE -- 4. EDIT points addressed for ticket #792... Commit: 672254d0e59b1e555aa0aa2506e7871bb188c5d4 https://github.com/ehb54/ultrascan3/commit/672254d0e59b1e555aa0aa2506e7871bb188c5d4 Author: alexsav815 Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- [3]GMP-ABDE -- 4. EDIT points addressed for ticket #792... Commit: 01301f4fb775a852d7048cf88a308ff8dd796f5a https://github.com/ehb54/ultrascan3/commit/01301f4fb775a852d7048cf88a308ff8dd796f5a Author: alexsav815 Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M programs/us_abde/us_norm_profile.cpp Log Message: ----------- GMP-ABDE -- 5. Analysis addressed for ticket #792... Commit: 3ba588420b506827b73516e8dfa8cd4ae9b2ff28 https://github.com/ehb54/ultrascan3/commit/3ba588420b506827b73516e8dfa8cd4ae9b2ff28 Author: alexsav815 Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M programs/us_abde/us_norm_profile.cpp Log Message: ----------- [2]GMP-ABDE -- 5. Analysis addressed for ticket #792... Commit: b543a92af379330a545e7dcc63e12daaf3d45239 https://github.com/ehb54/ultrascan3/commit/b543a92af379330a545e7dcc63e12daaf3d45239 Author: alexsav815 Date: 2026-03-27 (Fri, 27 Mar 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- GMP-ABDE -- 4. EDIT typo fixed... Commit: 407aa2fbe647825650959edafde01a47e49ac0a4 https://github.com/ehb54/ultrascan3/commit/407aa2fbe647825650959edafde01a47e49ac0a4 Author: alexsav815 Date: 2026-03-27 (Fri, 27 Mar 2026) Changed paths: M .github/workflows/bump-version.yml M .gitignore M CMakeLists.txt M CMakePresets.json M LICENSE.txt M README.manual M admin/cmake/GenerateVersion.cmake A admin/cmake/README.md A admin/cmake/packaging/README.md A admin/cmake/packaging/linux/LinuxDeploy.cmake A admin/cmake/packaging/linux/LinuxHpcDeploy.cmake A admin/cmake/packaging/linux/LinuxHpcPkg.cmake A admin/cmake/packaging/linux/LinuxPkg.cmake A admin/cmake/packaging/macos/MacDeploy.cmake A admin/cmake/packaging/macos/MacHpcDeploy.cmake A admin/cmake/packaging/macos/MacHpcPkg.cmake A admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake A admin/cmake/packaging/macos/MacOsPkg.cmake A admin/cmake/packaging/macos/StageAssistantDev.cmake A admin/cmake/packaging/windows/WinDeploy.cmake A admin/cmake/packaging/windows/WinPkg.cmake A 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doc/manual/usfont2.body R doc/manual/vhw_combine.body R doc/manual/vhw_distrib_plot.body R doc/manual/vhw_enhanced.body R doc/manual/wrapped-images.lst M gui/CMakeLists.txt M gui/us_help.cpp M gui/us_solution_gui.cpp M gui/us_solution_gui.h M makeall.sh A pkg/macos/README.md A pkg/macos/component.plist A pkg/macos/distribution.xml.in A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3 A pkg/macos/postinstall A pkg/macos/preinstall A pkg/macos/resources/Welcome.txt.in A pkg/macos/resources/background.png A pkg/macos/ultrascan_sysctl.plist A pkg/macos/uninstall.sh M programs/CMakeLists.txt M programs/us/CMakeLists.txt M programs/us/revision.sh M programs/us/us.cpp M programs/us_astfem_sim/us_astfem_sim.cpp M programs/us_helpdaemon/us_helpdaemon.cpp M programs/us_mpi_analysis/2dsa_worker.cpp M programs/us_mpi_analysis/CMakeLists.txt M programs/us_mpi_analysis/pcsa_worker.cpp M programs/us_mpi_analysis/revision.sh M programs/us_mpi_analysis/us_mpi_analysis.cpp M qmakeall.sh M qwtplot3d/CMakeLists.txt A scripts/bootstrap-linux.sh A scripts/bootstrap-macos.sh A scripts/bootstrap-windows.ps1 A scripts/bootstrap.bat M scripts/build.bat M scripts/build.ps1 M scripts/build.sh A us-build M utils/CMakeLists.txt M utils/us_astfem_rsa.cpp M utils/us_memory.cpp M vcpkg.json Log Message: ----------- Merge pull request #401 from ehb54/main pull main into alexey-dev-issue792 Commit: 82d4d191eb9afe4cf103b3792c6730f51eb8bafa https://github.com/ehb54/ultrascan3/commit/82d4d191eb9afe4cf103b3792c6730f51eb8bafa Author: alexsav815 Date: 2026-04-02 (Thu, 02 Apr 2026) Changed paths: M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h Log Message: ----------- GMP-ABDE -- 4. EDIT: ask user if only last scan was selected for each channel before accepting new edit parameters... Commit: e58b784f94dc22571d37ac77acdc90c148ee0004 https://github.com/ehb54/ultrascan3/commit/e58b784f94dc22571d37ac77acdc90c148ee0004 Author: alexsav815 Date: 2026-04-02 (Thu, 02 Apr 2026) Changed paths: M programs/us_abde/us_norm_profile.cpp M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h Log Message: ----------- Merge pull request #398 from ehb54/alexey-dev-issue792 Alexey dev issue792: GMP-ABDE & dataDisk changes Compare: https://github.com/ehb54/ultrascan3/compare/abf971e0666f...e58b784f94dc To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Fri Apr 3 00:29:56 2026 From: noreply at github.com (Lukas Dobler) Date: Thu, 02 Apr 2026 23:29:56 -0700 Subject: [us-commits] [ehb54/ultrascan3] Message-ID: Branch: refs/heads/lukas/manual Home: https://github.com/ehb54/ultrascan3 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Fri Apr 3 04:28:28 2026 From: noreply at github.com (Lukas Dobler) Date: Fri, 03 Apr 2026 03:28:28 -0700 Subject: [us-commits] [ehb54/ultrascan3] 94b9a5: Update CMakeLists to use `${SPHINX_PROJECT}` varia... Message-ID: Branch: refs/heads/lukas/manual Home: https://github.com/ehb54/ultrascan3 Commit: 94b9a553e412fb675ba67eea2c9f665b6207233d https://github.com/ehb54/ultrascan3/commit/94b9a553e412fb675ba67eea2c9f665b6207233d Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/CMakeLists.txt Log Message: ----------- Update CMakeLists to use `${SPHINX_PROJECT}` variables for Qt help file generation paths (`.qhp` and `.qhcp`). Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: e2d7da6bbf9fcc62e4bfa452f5ec19623488611e https://github.com/ehb54/ultrascan3/commit/e2d7da6bbf9fcc62e4bfa452f5ec19623488611e Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/requirements.txt Log Message: ----------- Add `sphinxcontrib-qthelp` and `myst-parser` to documentation requirements for Qt help and Markdown support. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 1e69c5071f55b5bc4963bc33c54c1f5978d9a86f https://github.com/ehb54/ultrascan3/commit/1e69c5071f55b5bc4963bc33c54c1f5978d9a86f Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Enhance Sphinx configuration: add version metadata generation from Git, update QtHelp/HTML output, and refine documentation structure. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 64293373d85c1dd99096806b49351207ccc8fcbd https://github.com/ehb54/ultrascan3/commit/64293373d85c1dd99096806b49351207ccc8fcbd Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/index.rst Log Message: ----------- Expand UltraScan-III documentation: add comprehensive structure, improve navigation with toctree captions, and include download link for PDF manual. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 4996aa594c1ed86a6a18b51f4a2e7f2f312ba230 https://github.com/ehb54/ultrascan3/commit/4996aa594c1ed86a6a18b51f4a2e7f2f312ba230 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: A doc/manual/source/2dsa/2dsa_adv.rst A doc/manual/source/2dsa/2dsa_analys.rst A doc/manual/source/2dsa/2dsa_main.rst A doc/manual/source/2dsa/index.rst A doc/manual/source/3000_rpm.rst A doc/manual/source/3d_plot.rst A doc/manual/source/_static/custom.css A doc/manual/source/_static/images/2dsa_3dplot.png A doc/manual/source/_static/images/2dsa_advan.png A doc/manual/source/_static/images/2dsa_analvv.png A doc/manual/source/_static/images/2dsa_analys.png A doc/manual/source/_static/images/2dsa_main-c.png A doc/manual/source/_static/images/2dsa_main-o.png A doc/manual/source/_static/images/2dsa_resplot.png A doc/manual/source/_static/images/D20W_bar.png A 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----------- Expand UltraScan-III documentation: add detailed GMP workflow guides, including protocol development, automation, e-signatures, report generation, and data acquisition. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Compare: https://github.com/ehb54/ultrascan3/compare/e58b784f94dc...4996aa594c1e To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Fri Apr 3 05:23:22 2026 From: noreply at github.com (Lukas Dobler) Date: Fri, 03 Apr 2026 04:23:22 -0700 Subject: [us-commits] [ehb54/ultrascan3] 518c1e: Update Sphinx configuration: adjust LaTeX preamble... Message-ID: Branch: refs/heads/lukas/manual Home: https://github.com/ehb54/ultrascan3 Commit: 518c1ee39c53443282fc68ec37cc855b2e5aa4f0 https://github.com/ehb54/ultrascan3/commit/518c1ee39c53443282fc68ec37cc855b2e5aa4f0 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update Sphinx configuration: adjust LaTeX preamble for header height and standardize document titles across output formats. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Fri Apr 3 14:17:13 2026 From: noreply at github.com (Lukas Dobler) Date: Fri, 03 Apr 2026 13:17:13 -0700 Subject: [us-commits] [ehb54/ultrascan3] 2946f9: Standardize "Optima" capitalization across XPN Vie... Message-ID: Branch: refs/heads/lukas/manual Home: https://github.com/ehb54/ultrascan3 Commit: 2946f944109702806ad7b25d283b258d3702adfa https://github.com/ehb54/ultrascan3/commit/2946f944109702806ad7b25d283b258d3702adfa Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/xpn_viewer.rst Log Message: ----------- Standardize "Optima" capitalization across XPN Viewer documentation. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 34d316c7e97fcdabcf86b0939a85e834d6d878f6 https://github.com/ehb54/ultrascan3/commit/34d316c7e97fcdabcf86b0939a85e834d6d878f6 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/vhw_enhanced.rst Log Message: ----------- Fix typo in vHW documentation: correct "Wieschet" to "Weischet". Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 56e8463890e60e8501b4233fb88a6dd74f0e39f4 https://github.com/ehb54/ultrascan3/commit/56e8463890e60e8501b4233fb88a6dd74f0e39f4 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/index.rst Log Message: ----------- Update Ultrascan-III website URL in documentation. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: ff5165410e579e9e3bf489cf74532942d4dd1b6d https://github.com/ehb54/ultrascan3/commit/ff5165410e579e9e3bf489cf74532942d4dd1b6d Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/config.rst Log Message: ----------- Revise configuration documentation: clarify directory descriptions, standardize terminology, improve debugging/debug level explanations, and update Optima panel section with centered image and corrected details. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 9d89cccbd5d1edac19f5118f9f73b017b4b62768 https://github.com/ehb54/ultrascan3/commit/9d89cccbd5d1edac19f5118f9f73b017b4b62768 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/experiment/import.rst Log Message: ----------- Fix image filename in import documentation: correct "Triplicate" to "triple". Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Compare: https://github.com/ehb54/ultrascan3/compare/518c1ee39c53...9d89cccbd5d1 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Fri Apr 3 15:35:38 2026 From: noreply at github.com (Lukas Dobler) Date: Fri, 03 Apr 2026 14:35:38 -0700 Subject: [us-commits] [ehb54/ultrascan3] 20e6e3: Add Sphinx transform for auto-generating index ent... Message-ID: Branch: refs/heads/lukas/manual Home: https://github.com/ehb54/ultrascan3 Commit: 20e6e37595eff7fcd8c617c1ae65f049be8e60f5 https://github.com/ehb54/ultrascan3/commit/20e6e37595eff7fcd8c617c1ae65f049be8e60f5 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: A doc/manual/source/auto_index.py Log Message: ----------- Add Sphinx transform for auto-generating index entries from section titles. Commit: 78763cd74bcca991929a7dc53e314e9e61a755b6 https://github.com/ehb54/ultrascan3/commit/78763cd74bcca991929a7dc53e314e9e61a755b6 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update Sphinx configuration: add `auto_index` extension and adjust sys.path setup for dynamic module resolution. Commit: e67f33a49e896d701d7a71317d8d8b2dcebb45a9 https://github.com/ehb54/ultrascan3/commit/e67f33a49e896d701d7a71317d8d8b2dcebb45a9 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: R doc/manual/source/_static/images/optima_config_edit.png M doc/manual/source/_static/images/optima_config_new.png Log Message: ----------- Update Optima configuration images in documentation: delete outdated file and revise new image. Commit: a0df61141d5869a4c8d57ccdaf8896b84fbf1add https://github.com/ehb54/ultrascan3/commit/a0df61141d5869a4c8d57ccdaf8896b84fbf1add Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/config.rst Log Message: ----------- Standardize header formatting in configuration documentation: adjust underline lengths and update section titles for consistency. Compare: https://github.com/ehb54/ultrascan3/compare/9d89cccbd5d1...a0df61141d58 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Fri Apr 3 15:43:53 2026 From: noreply at github.com (Lukas Dobler) Date: Fri, 03 Apr 2026 14:43:53 -0700 Subject: [us-commits] [ehb54/ultrascan3] 20a795: Update Sphinx configuration: fix sys.path insertio... Message-ID: Branch: refs/heads/lukas/manual Home: https://github.com/ehb54/ultrascan3 Commit: 20a795daec1d9d2b8a1e99a9522c5b0f39516f9f https://github.com/ehb54/ultrascan3/commit/20a795daec1d9d2b8a1e99a9522c5b0f39516f9f Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update Sphinx configuration: fix sys.path insertion to correctly add the current directory. 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Message-ID: Branch: refs/heads/lukas/manual Home: https://github.com/ehb54/ultrascan3 Commit: 213c7d1f346ca9afa40c688dc5d4daae4e55d79f https://github.com/ehb54/ultrascan3/commit/213c7d1f346ca9afa40c688dc5d4daae4e55d79f Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: R doc/manual/source/_static/css/custom.css M doc/manual/source/_static/custom.css Log Message: ----------- Remove unused `custom.css` file and retain only essential styles in `custom.css` for cleaner documentation styling. Commit: f31826280b208f87c2044d91ceed9b3b725941b8 https://github.com/ehb54/ultrascan3/commit/f31826280b208f87c2044d91ceed9b3b725941b8 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/_static/images/gmp/automation/auto_edit.png M doc/manual/source/_static/images/gmp/automation/data_viewer_tin.png M doc/manual/source/_static/images/gmp/automation/lims.png M doc/manual/source/_static/images/reporter-cmenu.png M doc/manual/source/_static/images/us_project_webed.png Log Message: ----------- Downscale extremely large images Commit: 0d8aa5eb3868f4fa28393c667f367905088267c1 https://github.com/ehb54/ultrascan3/commit/0d8aa5eb3868f4fa28393c667f367905088267c1 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Add support for qthelp exclusive css file Commit: 50222b23f0a251076777810ba005c924ef2ddb00 https://github.com/ehb54/ultrascan3/commit/50222b23f0a251076777810ba005c924ef2ddb00 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: A doc/manual/source/_static/qthelp.css Log Message: ----------- Add `qthelp.css` file to define default styling for QtHelp documentation Compare: https://github.com/ehb54/ultrascan3/compare/fec01135a70f...50222b23f0a2 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Sat Apr 4 04:16:29 2026 From: noreply at github.com (Lukas Dobler) Date: Sat, 04 Apr 2026 03:16:29 -0700 Subject: [us-commits] [ehb54/ultrascan3] 86fcf7: Standardize help text and add debug text options i... Message-ID: Branch: refs/heads/lukas/manual Home: https://github.com/ehb54/ultrascan3 Commit: 86fcf7036c1ad44220fbb6544552d2e7458fd76e https://github.com/ehb54/ultrascan3/commit/86fcf7036c1ad44220fbb6544552d2e7458fd76e Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/3d_plot.rst M doc/manual/source/config.rst M doc/manual/source/fit_meniscus.rst M doc/manual/source/pseudo3d.rst Log Message: ----------- Standardize help text and add debug text options in configuration documentation. To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Sat Apr 4 05:22:11 2026 From: noreply at github.com (Lukas Dobler) Date: Sat, 04 Apr 2026 04:22:11 -0700 Subject: [us-commits] [ehb54/ultrascan3] 38351d: Refine `auto_index` title processing: improve whit... Message-ID: Branch: refs/heads/lukas/manual Home: https://github.com/ehb54/ultrascan3 Commit: 38351d9b483d34b0d464cdc0a02cf4d0c711a5f0 https://github.com/ehb54/ultrascan3/commit/38351d9b483d34b0d464cdc0a02cf4d0c711a5f0 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/auto_index.py Log Message: ----------- Refine `auto_index` title processing: improve whitespace handling, enhance dimensional notation standardization, and ensure title case consistency. Commit: 881728a585525975764e48eb87de544e1a8f5ed6 https://github.com/ehb54/ultrascan3/commit/881728a585525975764e48eb87de544e1a8f5ed6 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/fe_match/index.rst Log Message: ----------- Standardize section headers and titles in FE Match documentation for consistency and improve formatting. Commit: 278eeecf4ee5b0f5e03bbcd8eae65e831f15837b https://github.com/ehb54/ultrascan3/commit/278eeecf4ee5b0f5e03bbcd8eae65e831f15837b Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_distrib_plot.rst M doc/manual/source/vhw_enhanced.rst Log Message: ----------- Standardize "van Holde-Weischet" terminology across documentation for improved consistency. Commit: 99bbe83fea89b40008e71864323759b4a75ff8cb https://github.com/ehb54/ultrascan3/commit/99bbe83fea89b40008e71864323759b4a75ff8cb Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/start_page-rpt.rst Log Message: ----------- Standardize section headers, titles, and dimensional notations in documentation for improved formatting and consistency. 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Message-ID: Branch: refs/heads/main Home: https://github.com/ehb54/ultrascan3 Commit: 94b9a553e412fb675ba67eea2c9f665b6207233d https://github.com/ehb54/ultrascan3/commit/94b9a553e412fb675ba67eea2c9f665b6207233d Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/CMakeLists.txt Log Message: ----------- Update CMakeLists to use `${SPHINX_PROJECT}` variables for Qt help file generation paths (`.qhp` and `.qhcp`). Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: e2d7da6bbf9fcc62e4bfa452f5ec19623488611e https://github.com/ehb54/ultrascan3/commit/e2d7da6bbf9fcc62e4bfa452f5ec19623488611e Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/requirements.txt Log Message: ----------- Add `sphinxcontrib-qthelp` and `myst-parser` to documentation requirements for Qt help and Markdown support. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 1e69c5071f55b5bc4963bc33c54c1f5978d9a86f https://github.com/ehb54/ultrascan3/commit/1e69c5071f55b5bc4963bc33c54c1f5978d9a86f Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Enhance Sphinx configuration: add version metadata generation from Git, update QtHelp/HTML output, and refine documentation structure. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 64293373d85c1dd99096806b49351207ccc8fcbd https://github.com/ehb54/ultrascan3/commit/64293373d85c1dd99096806b49351207ccc8fcbd Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/index.rst Log Message: ----------- Expand UltraScan-III documentation: add comprehensive structure, improve navigation with toctree captions, and include download link for PDF manual. 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Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 34d316c7e97fcdabcf86b0939a85e834d6d878f6 https://github.com/ehb54/ultrascan3/commit/34d316c7e97fcdabcf86b0939a85e834d6d878f6 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/vhw_enhanced.rst Log Message: ----------- Fix typo in vHW documentation: correct "Wieschet" to "Weischet". Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 56e8463890e60e8501b4233fb88a6dd74f0e39f4 https://github.com/ehb54/ultrascan3/commit/56e8463890e60e8501b4233fb88a6dd74f0e39f4 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/index.rst Log Message: ----------- Update Ultrascan-III website URL in documentation. 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Commit: 78763cd74bcca991929a7dc53e314e9e61a755b6 https://github.com/ehb54/ultrascan3/commit/78763cd74bcca991929a7dc53e314e9e61a755b6 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update Sphinx configuration: add `auto_index` extension and adjust sys.path setup for dynamic module resolution. Commit: e67f33a49e896d701d7a71317d8d8b2dcebb45a9 https://github.com/ehb54/ultrascan3/commit/e67f33a49e896d701d7a71317d8d8b2dcebb45a9 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: R doc/manual/source/_static/images/optima_config_edit.png M doc/manual/source/_static/images/optima_config_new.png Log Message: ----------- Update Optima configuration images in documentation: delete outdated file and revise new image. Commit: a0df61141d5869a4c8d57ccdaf8896b84fbf1add https://github.com/ehb54/ultrascan3/commit/a0df61141d5869a4c8d57ccdaf8896b84fbf1add Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/config.rst Log Message: ----------- Standardize header formatting in configuration documentation: adjust underline lengths and update section titles for consistency. Commit: 20a795daec1d9d2b8a1e99a9522c5b0f39516f9f https://github.com/ehb54/ultrascan3/commit/20a795daec1d9d2b8a1e99a9522c5b0f39516f9f Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update Sphinx configuration: fix sys.path insertion to correctly add the current directory. 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Commit: f31826280b208f87c2044d91ceed9b3b725941b8 https://github.com/ehb54/ultrascan3/commit/f31826280b208f87c2044d91ceed9b3b725941b8 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/_static/images/gmp/automation/auto_edit.png M doc/manual/source/_static/images/gmp/automation/data_viewer_tin.png M doc/manual/source/_static/images/gmp/automation/lims.png M doc/manual/source/_static/images/reporter-cmenu.png M doc/manual/source/_static/images/us_project_webed.png Log Message: ----------- Downscale extremely large images Commit: 0d8aa5eb3868f4fa28393c667f367905088267c1 https://github.com/ehb54/ultrascan3/commit/0d8aa5eb3868f4fa28393c667f367905088267c1 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Add support for qthelp exclusive css file Commit: 50222b23f0a251076777810ba005c924ef2ddb00 https://github.com/ehb54/ultrascan3/commit/50222b23f0a251076777810ba005c924ef2ddb00 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: A doc/manual/source/_static/qthelp.css Log Message: ----------- Add `qthelp.css` file to define default styling for QtHelp documentation Commit: 86fcf7036c1ad44220fbb6544552d2e7458fd76e https://github.com/ehb54/ultrascan3/commit/86fcf7036c1ad44220fbb6544552d2e7458fd76e Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/3d_plot.rst M doc/manual/source/config.rst M doc/manual/source/fit_meniscus.rst M doc/manual/source/pseudo3d.rst Log Message: ----------- Standardize help text and add debug text options in configuration documentation. Commit: 38351d9b483d34b0d464cdc0a02cf4d0c711a5f0 https://github.com/ehb54/ultrascan3/commit/38351d9b483d34b0d464cdc0a02cf4d0c711a5f0 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/auto_index.py Log Message: ----------- Refine `auto_index` title processing: improve whitespace handling, enhance dimensional notation standardization, and ensure title case consistency. Commit: 881728a585525975764e48eb87de544e1a8f5ed6 https://github.com/ehb54/ultrascan3/commit/881728a585525975764e48eb87de544e1a8f5ed6 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/fe_match/index.rst Log Message: ----------- Standardize section headers and titles in FE Match documentation for consistency and improve formatting. Commit: 278eeecf4ee5b0f5e03bbcd8eae65e831f15837b https://github.com/ehb54/ultrascan3/commit/278eeecf4ee5b0f5e03bbcd8eae65e831f15837b Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_distrib_plot.rst M doc/manual/source/vhw_enhanced.rst Log Message: ----------- Standardize "van Holde-Weischet" terminology across documentation for improved consistency. Commit: 99bbe83fea89b40008e71864323759b4a75ff8cb https://github.com/ehb54/ultrascan3/commit/99bbe83fea89b40008e71864323759b4a75ff8cb Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/start_page-rpt.rst Log Message: ----------- Standardize section headers, titles, and dimensional notations in documentation for improved formatting and consistency. 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----------- Merge pull request #402 from ehb54/lukas/manual Add sphinx manual Compare: https://github.com/ehb54/ultrascan3/compare/e58b784f94dc...75a2cca73b6c To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Sat Apr 4 13:40:23 2026 From: noreply at github.com (Lukas Dobler) Date: Sat, 04 Apr 2026 12:40:23 -0700 Subject: [us-commits] [ehb54/ultrascan3] Message-ID: Branch: refs/heads/lukas/manual Home: https://github.com/ehb54/ultrascan3 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Sat Apr 4 13:42:28 2026 From: noreply at github.com (Borries Demeler) Date: Sat, 04 Apr 2026 12:42:28 -0700 Subject: [us-commits] [ehb54/ultrascan3] 94b9a5: Update CMakeLists to use `${SPHINX_PROJECT}` varia... Message-ID: Branch: refs/heads/demeler-doc1 Home: https://github.com/ehb54/ultrascan3 Commit: 94b9a553e412fb675ba67eea2c9f665b6207233d https://github.com/ehb54/ultrascan3/commit/94b9a553e412fb675ba67eea2c9f665b6207233d Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/CMakeLists.txt Log Message: ----------- Update CMakeLists to use `${SPHINX_PROJECT}` variables for Qt help file generation paths (`.qhp` and `.qhcp`). Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: e2d7da6bbf9fcc62e4bfa452f5ec19623488611e https://github.com/ehb54/ultrascan3/commit/e2d7da6bbf9fcc62e4bfa452f5ec19623488611e Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/requirements.txt Log Message: ----------- Add `sphinxcontrib-qthelp` and `myst-parser` to documentation requirements for Qt help and Markdown support. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 1e69c5071f55b5bc4963bc33c54c1f5978d9a86f https://github.com/ehb54/ultrascan3/commit/1e69c5071f55b5bc4963bc33c54c1f5978d9a86f Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Enhance Sphinx configuration: add version metadata generation from Git, update QtHelp/HTML output, and refine documentation structure. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 64293373d85c1dd99096806b49351207ccc8fcbd https://github.com/ehb54/ultrascan3/commit/64293373d85c1dd99096806b49351207ccc8fcbd Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/index.rst Log Message: ----------- Expand UltraScan-III documentation: add comprehensive structure, improve navigation with toctree captions, and include download link for PDF manual. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 4996aa594c1ed86a6a18b51f4a2e7f2f312ba230 https://github.com/ehb54/ultrascan3/commit/4996aa594c1ed86a6a18b51f4a2e7f2f312ba230 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: A doc/manual/source/2dsa/2dsa_adv.rst A doc/manual/source/2dsa/2dsa_analys.rst A doc/manual/source/2dsa/2dsa_main.rst A doc/manual/source/2dsa/index.rst A doc/manual/source/3000_rpm.rst A doc/manual/source/3d_plot.rst A doc/manual/source/_static/custom.css A doc/manual/source/_static/images/2dsa_3dplot.png A doc/manual/source/_static/images/2dsa_advan.png A doc/manual/source/_static/images/2dsa_analvv.png A doc/manual/source/_static/images/2dsa_analys.png A doc/manual/source/_static/images/2dsa_main-c.png A doc/manual/source/_static/images/2dsa_main-o.png A doc/manual/source/_static/images/2dsa_resplot.png A doc/manual/source/_static/images/D20W_bar.png A 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----------- Expand UltraScan-III documentation: add detailed GMP workflow guides, including protocol development, automation, e-signatures, report generation, and data acquisition. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 518c1ee39c53443282fc68ec37cc855b2e5aa4f0 https://github.com/ehb54/ultrascan3/commit/518c1ee39c53443282fc68ec37cc855b2e5aa4f0 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update Sphinx configuration: adjust LaTeX preamble for header height and standardize document titles across output formats. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 2946f944109702806ad7b25d283b258d3702adfa https://github.com/ehb54/ultrascan3/commit/2946f944109702806ad7b25d283b258d3702adfa Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/xpn_viewer.rst Log Message: ----------- Standardize "Optima" capitalization across XPN Viewer documentation. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 34d316c7e97fcdabcf86b0939a85e834d6d878f6 https://github.com/ehb54/ultrascan3/commit/34d316c7e97fcdabcf86b0939a85e834d6d878f6 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/vhw_enhanced.rst Log Message: ----------- Fix typo in vHW documentation: correct "Wieschet" to "Weischet". Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 56e8463890e60e8501b4233fb88a6dd74f0e39f4 https://github.com/ehb54/ultrascan3/commit/56e8463890e60e8501b4233fb88a6dd74f0e39f4 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/index.rst Log Message: ----------- Update Ultrascan-III website URL in documentation. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: ff5165410e579e9e3bf489cf74532942d4dd1b6d https://github.com/ehb54/ultrascan3/commit/ff5165410e579e9e3bf489cf74532942d4dd1b6d Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/config.rst Log Message: ----------- Revise configuration documentation: clarify directory descriptions, standardize terminology, improve debugging/debug level explanations, and update Optima panel section with centered image and corrected details. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 9d89cccbd5d1edac19f5118f9f73b017b4b62768 https://github.com/ehb54/ultrascan3/commit/9d89cccbd5d1edac19f5118f9f73b017b4b62768 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/experiment/import.rst Log Message: ----------- Fix image filename in import documentation: correct "Triplicate" to "triple". Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 20e6e37595eff7fcd8c617c1ae65f049be8e60f5 https://github.com/ehb54/ultrascan3/commit/20e6e37595eff7fcd8c617c1ae65f049be8e60f5 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: A doc/manual/source/auto_index.py Log Message: ----------- Add Sphinx transform for auto-generating index entries from section titles. Commit: 78763cd74bcca991929a7dc53e314e9e61a755b6 https://github.com/ehb54/ultrascan3/commit/78763cd74bcca991929a7dc53e314e9e61a755b6 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update Sphinx configuration: add `auto_index` extension and adjust sys.path setup for dynamic module resolution. Commit: e67f33a49e896d701d7a71317d8d8b2dcebb45a9 https://github.com/ehb54/ultrascan3/commit/e67f33a49e896d701d7a71317d8d8b2dcebb45a9 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: R doc/manual/source/_static/images/optima_config_edit.png M doc/manual/source/_static/images/optima_config_new.png Log Message: ----------- Update Optima configuration images in documentation: delete outdated file and revise new image. Commit: a0df61141d5869a4c8d57ccdaf8896b84fbf1add https://github.com/ehb54/ultrascan3/commit/a0df61141d5869a4c8d57ccdaf8896b84fbf1add Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/config.rst Log Message: ----------- Standardize header formatting in configuration documentation: adjust underline lengths and update section titles for consistency. Commit: 20a795daec1d9d2b8a1e99a9522c5b0f39516f9f https://github.com/ehb54/ultrascan3/commit/20a795daec1d9d2b8a1e99a9522c5b0f39516f9f Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update Sphinx configuration: fix sys.path insertion to correctly add the current directory. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 7022886ca10e06e291974dd36c40d68886f97592 https://github.com/ehb54/ultrascan3/commit/7022886ca10e06e291974dd36c40d68886f97592 Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_adv.rst Log Message: ----------- Update doc/manual/source/2dsa/2dsa_adv.rst Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com> Commit: fec01135a70f30bb6fe279c6355c6d8d46e50f02 https://github.com/ehb54/ultrascan3/commit/fec01135a70f30bb6fe279c6355c6d8d46e50f02 Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_analys.rst Log Message: ----------- Update doc/manual/source/2dsa/2dsa_analys.rst Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com> Commit: 213c7d1f346ca9afa40c688dc5d4daae4e55d79f https://github.com/ehb54/ultrascan3/commit/213c7d1f346ca9afa40c688dc5d4daae4e55d79f Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: R doc/manual/source/_static/css/custom.css M doc/manual/source/_static/custom.css Log Message: ----------- Remove unused `custom.css` file and retain only essential styles in `custom.css` for cleaner documentation styling. Commit: f31826280b208f87c2044d91ceed9b3b725941b8 https://github.com/ehb54/ultrascan3/commit/f31826280b208f87c2044d91ceed9b3b725941b8 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/_static/images/gmp/automation/auto_edit.png M doc/manual/source/_static/images/gmp/automation/data_viewer_tin.png M doc/manual/source/_static/images/gmp/automation/lims.png M doc/manual/source/_static/images/reporter-cmenu.png M doc/manual/source/_static/images/us_project_webed.png Log Message: ----------- Downscale extremely large images Commit: 0d8aa5eb3868f4fa28393c667f367905088267c1 https://github.com/ehb54/ultrascan3/commit/0d8aa5eb3868f4fa28393c667f367905088267c1 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Add support for qthelp exclusive css file Commit: 50222b23f0a251076777810ba005c924ef2ddb00 https://github.com/ehb54/ultrascan3/commit/50222b23f0a251076777810ba005c924ef2ddb00 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: A doc/manual/source/_static/qthelp.css Log Message: ----------- Add `qthelp.css` file to define default styling for QtHelp documentation Commit: 86fcf7036c1ad44220fbb6544552d2e7458fd76e https://github.com/ehb54/ultrascan3/commit/86fcf7036c1ad44220fbb6544552d2e7458fd76e Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/3d_plot.rst M doc/manual/source/config.rst M doc/manual/source/fit_meniscus.rst M doc/manual/source/pseudo3d.rst Log Message: ----------- Standardize help text and add debug text options in configuration documentation. Commit: 38351d9b483d34b0d464cdc0a02cf4d0c711a5f0 https://github.com/ehb54/ultrascan3/commit/38351d9b483d34b0d464cdc0a02cf4d0c711a5f0 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/auto_index.py Log Message: ----------- Refine `auto_index` title processing: improve whitespace handling, enhance dimensional notation standardization, and ensure title case consistency. Commit: 881728a585525975764e48eb87de544e1a8f5ed6 https://github.com/ehb54/ultrascan3/commit/881728a585525975764e48eb87de544e1a8f5ed6 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/fe_match/index.rst Log Message: ----------- Standardize section headers and titles in FE Match documentation for consistency and improve formatting. 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Commit: 99bbe83fea89b40008e71864323759b4a75ff8cb https://github.com/ehb54/ultrascan3/commit/99bbe83fea89b40008e71864323759b4a75ff8cb Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/start_page-rpt.rst Log Message: ----------- Standardize section headers, titles, and dimensional notations in documentation for improved formatting and consistency. 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----------- Merge pull request #402 from ehb54/lukas/manual Add sphinx manual Commit: dd51d90b60e4fd6785c98531588a585dc0fb34ed https://github.com/ehb54/ultrascan3/commit/dd51d90b60e4fd6785c98531588a585dc0fb34ed Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/CMakeLists.txt A doc/manual/source/2dsa/2dsa_adv.rst A doc/manual/source/2dsa/2dsa_analys.rst A doc/manual/source/2dsa/2dsa_main.rst A doc/manual/source/2dsa/index.rst A doc/manual/source/3000_rpm.rst A doc/manual/source/3d_plot.rst R doc/manual/source/_static/css/custom.css A doc/manual/source/_static/custom.css A doc/manual/source/_static/images/2dsa_3dplot.png A doc/manual/source/_static/images/2dsa_advan.png A doc/manual/source/_static/images/2dsa_analvv.png A doc/manual/source/_static/images/2dsa_analys.png A doc/manual/source/_static/images/2dsa_main-c.png A doc/manual/source/_static/images/2dsa_main-o.png A 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----------- Merge pull request #404 from ehb54/main update demeler-doc1 to main Compare: https://github.com/ehb54/ultrascan3/compare/e58b784f94dc...dd51d90b60e4 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Sat Apr 4 14:23:20 2026 From: noreply at github.com (Borries Demeler) Date: Sat, 04 Apr 2026 13:23:20 -0700 Subject: [us-commits] [ehb54/ultrascan3] cd2bc2: Modify capitalization in fit meniscus Message-ID: Branch: refs/heads/demeler-doc1 Home: https://github.com/ehb54/ultrascan3 Commit: cd2bc2e7c99e075b63a282c8e687e6d0e111670d https://github.com/ehb54/ultrascan3/commit/cd2bc2e7c99e075b63a282c8e687e6d0e111670d Author: Demeler Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/fit_meniscus.rst Log Message: ----------- Modify capitalization in fit meniscus To unsubscribe from these emails, change your notification settings at 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A doc/manual/source/start_page-rpt.rst A doc/manual/source/start_page.rst A doc/manual/source/time_derivative.rst A doc/manual/source/tmst_viewer.rst A doc/manual/source/us_buoyancy.rst A doc/manual/source/us_edit.rst A doc/manual/source/us_equiltime.rst A doc/manual/source/us_extinction.rst A doc/manual/source/us_fds_filemanager.rst A doc/manual/source/us_investigator.rst A doc/manual/source/us_modelmetrics.rst A doc/manual/source/us_project.rst A doc/manual/source/us_spectrum.rst A doc/manual/source/vhw_combine.rst A doc/manual/source/vhw_distrib_plot.rst A doc/manual/source/vhw_enhanced.rst A doc/manual/source/xpn_viewer.rst Log Message: ----------- Merge pull request #404 from ehb54/main update demeler-doc1 to main Commit: cd2bc2e7c99e075b63a282c8e687e6d0e111670d https://github.com/ehb54/ultrascan3/commit/cd2bc2e7c99e075b63a282c8e687e6d0e111670d Author: Demeler Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/fit_meniscus.rst Log Message: ----------- Modify 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[us-commits] [ehb54/ultrascan3] 94b9a5: Update CMakeLists to use `${SPHINX_PROJECT}` varia... Message-ID: Branch: refs/heads/lukas/us_branch_python_venv Home: https://github.com/ehb54/ultrascan3 Commit: 94b9a553e412fb675ba67eea2c9f665b6207233d https://github.com/ehb54/ultrascan3/commit/94b9a553e412fb675ba67eea2c9f665b6207233d Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/CMakeLists.txt Log Message: ----------- Update CMakeLists to use `${SPHINX_PROJECT}` variables for Qt help file generation paths (`.qhp` and `.qhcp`). Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: e2d7da6bbf9fcc62e4bfa452f5ec19623488611e https://github.com/ehb54/ultrascan3/commit/e2d7da6bbf9fcc62e4bfa452f5ec19623488611e Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/requirements.txt Log Message: ----------- Add `sphinxcontrib-qthelp` and `myst-parser` to documentation requirements for Qt help and Markdown support. 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Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 64293373d85c1dd99096806b49351207ccc8fcbd https://github.com/ehb54/ultrascan3/commit/64293373d85c1dd99096806b49351207ccc8fcbd Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/index.rst Log Message: ----------- Expand UltraScan-III documentation: add comprehensive structure, improve navigation with toctree captions, and include download link for PDF manual. 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Commit: 38351d9b483d34b0d464cdc0a02cf4d0c711a5f0 https://github.com/ehb54/ultrascan3/commit/38351d9b483d34b0d464cdc0a02cf4d0c711a5f0 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/auto_index.py Log Message: ----------- Refine `auto_index` title processing: improve whitespace handling, enhance dimensional notation standardization, and ensure title case consistency. Commit: 881728a585525975764e48eb87de544e1a8f5ed6 https://github.com/ehb54/ultrascan3/commit/881728a585525975764e48eb87de544e1a8f5ed6 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/fe_match/index.rst Log Message: ----------- Standardize section headers and titles in FE Match documentation for consistency and improve formatting. 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Commit: 99bbe83fea89b40008e71864323759b4a75ff8cb https://github.com/ehb54/ultrascan3/commit/99bbe83fea89b40008e71864323759b4a75ff8cb Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/start_page-rpt.rst Log Message: ----------- Standardize section headers, titles, and dimensional notations in documentation for improved formatting and consistency. 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----------- Merge pull request #402 from ehb54/lukas/manual Add sphinx manual Commit: dd51d90b60e4fd6785c98531588a585dc0fb34ed https://github.com/ehb54/ultrascan3/commit/dd51d90b60e4fd6785c98531588a585dc0fb34ed Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/CMakeLists.txt A doc/manual/source/2dsa/2dsa_adv.rst A doc/manual/source/2dsa/2dsa_analys.rst A doc/manual/source/2dsa/2dsa_main.rst A doc/manual/source/2dsa/index.rst A doc/manual/source/3000_rpm.rst A doc/manual/source/3d_plot.rst R doc/manual/source/_static/css/custom.css A doc/manual/source/_static/custom.css A doc/manual/source/_static/images/2dsa_3dplot.png A doc/manual/source/_static/images/2dsa_advan.png A doc/manual/source/_static/images/2dsa_analvv.png A doc/manual/source/_static/images/2dsa_analys.png A doc/manual/source/_static/images/2dsa_main-c.png A doc/manual/source/_static/images/2dsa_main-o.png A 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----------- Merge pull request #404 from ehb54/main update demeler-doc1 to main Commit: cd2bc2e7c99e075b63a282c8e687e6d0e111670d https://github.com/ehb54/ultrascan3/commit/cd2bc2e7c99e075b63a282c8e687e6d0e111670d Author: Demeler Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/fit_meniscus.rst Log Message: ----------- Modify capitalization in fit meniscus Commit: cc049b493eb8cb3409dd4d22051e345fd80c7982 https://github.com/ehb54/ultrascan3/commit/cc049b493eb8cb3409dd4d22051e345fd80c7982 Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/fit_meniscus.rst Log Message: ----------- Merge pull request #405 from ehb54/demeler-doc1 Demeler doc1 Commit: e992b5f9eb5fea3d4198ca7bdc74f9eab05c57f3 https://github.com/ehb54/ultrascan3/commit/e992b5f9eb5fea3d4198ca7bdc74f9eab05c57f3 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-05 (Sun, 05 Apr 2026) Changed 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notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Sun Apr 5 03:43:51 2026 From: noreply at github.com (Lukas Dobler) Date: Sun, 05 Apr 2026 02:43:51 -0700 Subject: [us-commits] [ehb54/ultrascan3] Message-ID: Branch: refs/heads/lukas/packaging_sphinx Home: https://github.com/ehb54/ultrascan3 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Mon Apr 6 04:42:28 2026 From: noreply at github.com (Lukas Dobler) Date: Mon, 06 Apr 2026 03:42:28 -0700 Subject: [us-commits] [ehb54/ultrascan3] Message-ID: Branch: refs/heads/lukas/manual_test/make Home: https://github.com/ehb54/ultrascan3 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Mon Apr 6 10:57:37 2026 From: noreply at github.com (Lukas Dobler) Date: Mon, 06 Apr 2026 09:57:37 -0700 Subject: [us-commits] [ehb54/ultrascan3] 11572c: Update Sphinx build system: include `auto_index.py... Message-ID: Branch: refs/heads/lukas/manual_test/make Home: https://github.com/ehb54/ultrascan3 Commit: 11572ca66d369080b73f5925c9b46c3b7200c538 https://github.com/ehb54/ultrascan3/commit/11572ca66d369080b73f5925c9b46c3b7200c538 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-06 (Mon, 06 Apr 2026) Changed paths: M doc/manual/CMakeLists.txt M doc/manual/Makefile M doc/manual/source/index.rst Log Message: ----------- Update Sphinx build system: include `auto_index.py`, link PDF manual in HTML, and clean PDF on `make clean`. Commit: e2fbf48c659f3fad2922c9067a43f1b3bdc0ec5e https://github.com/ehb54/ultrascan3/commit/e2fbf48c659f3fad2922c9067a43f1b3bdc0ec5e Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-06 (Mon, 06 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update LaTeX configuration: set `latex_use_xindy` to False and redefine font settings for better Unicode handling and compatibility. 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Message-ID: Branch: refs/heads/lukas/us_plot_zoom_qwt616 Home: https://github.com/ehb54/ultrascan3 Commit: dcc8ccbdac5394275563aeee0c8c523a6df45589 https://github.com/ehb54/ultrascan3/commit/dcc8ccbdac5394275563aeee0c8c523a6df45589 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-06 (Mon, 06 Apr 2026) Changed paths: M gui/us_plot.cpp Log Message: ----------- Refactor zoom logic to handle null plots and absolute values To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Mon Apr 6 14:34:35 2026 From: noreply at github.com (alexsav815) Date: Mon, 06 Apr 2026 13:34:35 -0700 Subject: [us-commits] [ehb54/ultrascan3] 254289: ACAB doubled Message-ID: Branch: refs/heads/alexey-dev-issue798 Home: https://github.com/ehb54/ultrascan3 Commit: 2542899201e17dd085de687f6fdfe671fa123bdb https://github.com/ehb54/ultrascan3/commit/2542899201e17dd085de687f6fdfe671fa123bdb 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doc/manual/source/tmp.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/xpn_viewer.rst Log Message: ----------- WALICAFB Commit: 779bf5e32b16d7eddc415ecc2fe90709ac0026b9 https://github.com/ehb54/ultrascan3/commit/779bf5e32b16d7eddc415ecc2fe90709ac0026b9 Author: Haben Gabir Date: 2026-02-20 (Fri, 20 Feb 2026) Changed paths: A .github/workflows/bump-version.yml M CMakeLists.txt M CMakePresets.json A admin/cmake/toolchain-macos.cmake A admin/cmake/triplets/arm64-osx-dynamic.cmake M admin/cmake/triplets/x64-osx-dynamic.cmake R alpha/srcdevel R alpha/us.cpp M gui/us_analysis_base2.cpp M gui/us_analysis_base2.h M gui/us_csv_loader.cpp M gui/us_model_loader.cpp M gui/us_plot.cpp M gui/us_report_gui.cpp M gui/us_report_gui.h M programs/CMakeLists.txt M programs/us/CMakeLists.txt M programs/us_2dsa/us_2dsa.cpp M programs/us_2dsa/us_2dsa.h M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_analysis_profile/us_analysis_profile.h M 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programs/us_experiment/us_proto_ranges.cpp Log Message: ----------- Merge branch 'main' into 527-enhancement-sphinx-migration-2 Commit: 534da76a2eb5090416dc3e2fa4416db272ac9b91 https://github.com/ehb54/ultrascan3/commit/534da76a2eb5090416dc3e2fa4416db272ac9b91 Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-02-24 (Tue, 24 Feb 2026) Changed paths: M programs/us_com_project/us_com_project_gui.cpp M programs/us_com_project/us_com_project_gui.h M programs/us_experiment/us_experiment_gui_optima.h Log Message: ----------- Merge branch 'main' into 527-enhancement-sphinx-migration-2 Commit: d28e726d4e40aae7be0f55ed03c1e7fe45e36d00 https://github.com/ehb54/ultrascan3/commit/d28e726d4e40aae7be0f55ed03c1e7fe45e36d00 Author: aaron-auc Date: 2026-02-24 (Tue, 24 Feb 2026) Changed paths: M doc/manual/source/colorgradient.rst M doc/manual/source/conf.py M doc/manual/source/config.rst M doc/manual/source/experiment/range.rst M doc/manual/source/export_legacy.rst M 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Commit: 572bb723ed591be3225aacbdbc387c93c17ca792 https://github.com/ehb54/ultrascan3/commit/572bb723ed591be3225aacbdbc387c93c17ca792 Author: emre brookes Date: 2026-02-26 (Thu, 26 Feb 2026) Changed paths: M gui/us_spectrodata.h M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_ddist_combine/us_ddist_combine.h M programs/us_ga_init/us_ga_init.cpp M programs/us_ga_init/us_ga_init.h M programs/us_ga_init/us_solutedata.cpp M programs/us_integral/us_integral.cpp M programs/us_integral/us_integral.h M programs/us_modelmetrics/us_modelmetrics.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.h Log Message: ----------- Merge branch 'main' into ehb54-issue-670 Commit: 85100ef73842bc75a8f210f7b9038301adae82db https://github.com/ehb54/ultrascan3/commit/85100ef73842bc75a8f210f7b9038301adae82db Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-02-27 (Fri, 27 Feb 2026) Changed paths: M gui/us_spectrodata.h M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_ddist_combine/us_ddist_combine.h M programs/us_ga_init/us_ga_init.cpp M programs/us_ga_init/us_ga_init.h M programs/us_ga_init/us_solutedata.cpp M programs/us_integral/us_integral.cpp M programs/us_integral/us_integral.h M programs/us_modelmetrics/us_modelmetrics.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.h Log Message: ----------- Merge branch 'main' into 527-enhancement-sphinx-migration-2 Commit: 7f63285b165bc88c2a317f9f368082e0d24d8861 https://github.com/ehb54/ultrascan3/commit/7f63285b165bc88c2a317f9f368082e0d24d8861 Author: aaron-auc Date: 2026-02-28 (Sat, 28 Feb 2026) Changed paths: M .gitignore M CMakeLists.txt A admin/cmake/MacDeploy.cmake R buildsys/vcpkg/overlay-ports/qt5-tools/fix-pkgconfig-qt5uiplugin-not-found.patch R buildsys/vcpkg/overlay-ports/qt5-tools/fix-spawnvp-argv.patch R buildsys/vcpkg/overlay-ports/qt5-tools/libclang.patch R buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake R buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json M doc/manual/CMakeLists.txt A doc/manual/StageAssistant.cmake M doc/manual/source/mwl_spectra.rst M gui/CMakeLists.txt M gui/us_help.cpp M programs/us_helpdaemon/us_helpdaemon.cpp M qwtplot3d/CMakeLists.txt M scripts/build.sh M vcpkg.json Log Message: ----------- fix: fix qt help search and implement dmg Commit: 8e3d67b30d1a4eaf6faf0d18d80a835288ee5ae7 https://github.com/ehb54/ultrascan3/commit/8e3d67b30d1a4eaf6faf0d18d80a835288ee5ae7 Author: aaron-auc Date: 2026-02-28 (Sat, 28 Feb 2026) Changed paths: M .gitignore M CMakeLists.txt M CMakePresets.json R admin/cmake/toolchain-macos.cmake A admin/cmake/toolchain.cmake A admin/cmake/triplets/arm64-linux.cmake A admin/cmake/triplets/arm64-windows.cmake A etc/icons/make-icons.sh A etc/icons/us3-icon-master-512.png M etc/us3-icon-128x128.ico M etc/us3-icon-128x128.png M etc/us3-icon-32x32.png M etc/us3-icon-48x48.ico M etc/us3-icon-48x48.png M etc/us3-icon.icns M gui/CMakeLists.txt M gui/images/us3-icon-128x128.png M gui/images/us3-icon-16x16.png M gui/images/us3-icon-256x256.png M gui/images/us3-icon-32x32.png M gui/images/us3-icon-48x48.png M gui/images/us3-icon-512x512.png M gui/images/us3-icon-64x64.png M gui/us_spectrodata.h M programs/us/CMakeLists.txt M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_ddist_combine/us_ddist_combine.h M programs/us_ga_init/us_ga_init.cpp M programs/us_ga_init/us_ga_init.h M programs/us_ga_init/us_solutedata.cpp M programs/us_integral/us_integral.cpp M programs/us_integral/us_integral.h M programs/us_modelmetrics/us_modelmetrics.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.h M qwtplot3d/include/qwt3d_openglhelper.h A scripts/build.bat A scripts/build.ps1 M scripts/build.sh M vcpkg.json Log Message: ----------- Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2 # Conflicts: # .gitignore # scripts/build.sh Commit: ef3356b450a93ec526f92ee27da0a9bfcfa9c04a https://github.com/ehb54/ultrascan3/commit/ef3356b450a93ec526f92ee27da0a9bfcfa9c04a Author: aaron-auc Date: 2026-03-01 (Sun, 01 Mar 2026) Changed paths: M LICENSE.txt Log Message: ----------- fix: text was original utf-8 so quotes became questions marks with ascii tool. 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Commit: 82c2dc2269b90376cf1f69ca3f88b4bee38c641e https://github.com/ehb54/ultrascan3/commit/82c2dc2269b90376cf1f69ca3f88b4bee38c641e Author: aaron-auc Date: 2026-03-02 (Mon, 02 Mar 2026) Changed paths: R admin/cmake/MacDeploy.cmake A admin/cmake/packaging/macos/MacDeploy.cmake A admin/cmake/packaging/macos/MacOsPkg.cmake A pkg/macos/component.plist A pkg/macos/distribution.xml.in A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3 A pkg/macos/postinstall A pkg/macos/preinstall A pkg/macos/resources/Welcome.txt.in A pkg/macos/resources/background.png A pkg/macos/ultrascan_sysctl.plist A pkg/macos/uninstall.sh M scripts/build.sh Log Message: ----------- add: launcher and packaging step Commit: 88ef4e481d1b4ea751d997b156e3782f1befce93 https://github.com/ehb54/ultrascan3/commit/88ef4e481d1b4ea751d997b156e3782f1befce93 Author: aaron-auc Date: 2026-03-02 (Mon, 02 Mar 2026) Changed paths: M CMakeLists.txt M CMakePresets.json M admin/cmake/packaging/macos/MacDeploy.cmake M admin/cmake/toolchain.cmake M doc/manual/CMakeLists.txt M doc/manual/StageAssistant.cmake Log Message: ----------- add: working qt6 build and install Commit: 04583d8a1b0bcf01875f31b93a12343610284126 https://github.com/ehb54/ultrascan3/commit/04583d8a1b0bcf01875f31b93a12343610284126 Author: aaron-auc Date: 2026-03-04 (Wed, 04 Mar 2026) Changed paths: M CMakeLists.txt A admin/cmake/packaging/windows/WinDeploy.cmake A admin/cmake/packaging/windows/WinPkg.cmake Log Message: ----------- add: windows installer Commit: 20b958cec1d253988daedd88a2fec65efd28448d https://github.com/ehb54/ultrascan3/commit/20b958cec1d253988daedd88a2fec65efd28448d Author: aaron-auc Date: 2026-03-04 (Wed, 04 Mar 2026) Changed paths: M scripts/build.ps1 Log Message: ----------- add: pkg command to build.ps1 Commit: 2698e05dd320a374785cab43ed05a52db3c5c3a7 https://github.com/ehb54/ultrascan3/commit/2698e05dd320a374785cab43ed05a52db3c5c3a7 Author: aaron-auc Date: 2026-03-04 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programs/us/CMakeLists.txt M scripts/build.ps1 M scripts/build.sh Log Message: ----------- mod: windows and macos qt assistant fix Commit: adb74a9f1e5a1e238c264228544137f56a4125b5 https://github.com/ehb54/ultrascan3/commit/adb74a9f1e5a1e238c264228544137f56a4125b5 Author: aaron-auc Date: 2026-03-06 (Fri, 06 Mar 2026) Changed paths: M scripts/build.ps1 Log Message: ----------- fix: builddir set at the beginning Commit: cea2ea0e77baf6dbcc9097b3062ede36ca70f800 https://github.com/ehb54/ultrascan3/commit/cea2ea0e77baf6dbcc9097b3062ede36ca70f800 Author: aaron-auc Date: 2026-03-06 (Fri, 06 Mar 2026) Changed paths: M CMakeLists.txt M doc/manual/CMakeLists.txt M scripts/build.ps1 Log Message: ----------- fix: windows path issues Commit: 99a443309500f6d44fde4d4ba640770dfadeec24 https://github.com/ehb54/ultrascan3/commit/99a443309500f6d44fde4d4ba640770dfadeec24 Author: aaron-auc Date: 2026-03-06 (Fri, 06 Mar 2026) Changed paths: M admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake M doc/manual/CMakeLists.txt M programs/us/CMakeLists.txt M programs/us_helpdaemon/us_helpdaemon.cpp Log Message: ----------- fix: windows missing dll Commit: 399ad6ee7636d4885c37adff02b723d1e6af48c9 https://github.com/ehb54/ultrascan3/commit/399ad6ee7636d4885c37adff02b723d1e6af48c9 Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M CMakeLists.txt A admin/cmake/packaging/linux/LinuxDeploy.cmake A admin/cmake/packaging/linux/LinuxPkg.cmake M scripts/build.sh M utils/CMakeLists.txt Log Message: ----------- add: linux cmake packaging Commit: c3215226c1e826bd7c620115a98fe3694cfe771e https://github.com/ehb54/ultrascan3/commit/c3215226c1e826bd7c620115a98fe3694cfe771e Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M scripts/build.sh M utils/us_memory.cpp Log Message: ----------- fix: cross platform page size Commit: 16d1f75e51f11ad87c8f18b11e0a8a2bb755ea44 https://github.com/ehb54/ultrascan3/commit/16d1f75e51f11ad87c8f18b11e0a8a2bb755ea44 Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M CMakeLists.txt M admin/cmake/packaging/linux/LinuxDeploy.cmake M scripts/build.ps1 M scripts/build.sh M vcpkg.json Log Message: ----------- fix: assistant on linux Commit: 5ab554ce68ae411774740695115c51b480df8c8a https://github.com/ehb54/ultrascan3/commit/5ab554ce68ae411774740695115c51b480df8c8a Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M scripts/build.ps1 M scripts/build.sh Log Message: ----------- fix: vcpkg cache clear Commit: a8b6e9963d8ed447dc737af6b4e3b69c3894945f https://github.com/ehb54/ultrascan3/commit/a8b6e9963d8ed447dc737af6b4e3b69c3894945f Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M scripts/build.ps1 M scripts/build.sh Log Message: ----------- fix: vcpkg cache clear fix Commit: 19f656eb532b2218880402623455153763d66d50 https://github.com/ehb54/ultrascan3/commit/19f656eb532b2218880402623455153763d66d50 Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M CMakeLists.txt Log Message: ----------- fix: assistant now copied to bin on dev build Commit: 75e0dc23de6fbdd330b322115c640d973e916d02 https://github.com/ehb54/ultrascan3/commit/75e0dc23de6fbdd330b322115c640d973e916d02 Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M CMakeLists.txt Log Message: ----------- fix: assistant find update Commit: 57f162e692e1a548bb426454e7e768e6f68b1bc4 https://github.com/ehb54/ultrascan3/commit/57f162e692e1a548bb426454e7e768e6f68b1bc4 Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M CMakeLists.txt M programs/us/us.cpp Log Message: ----------- fix: program path issue Commit: 4700970e14e8ef1bf44b3fe91efd8dbcd15ba544 https://github.com/ehb54/ultrascan3/commit/4700970e14e8ef1bf44b3fe91efd8dbcd15ba544 Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M CMakeLists.txt Log Message: ----------- fix: assistant not found Commit: 14d6c7e63b928fb3a73559fdafa9426502eda98c https://github.com/ehb54/ultrascan3/commit/14d6c7e63b928fb3a73559fdafa9426502eda98c Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M scripts/build.sh Log Message: ----------- fix: guard specific macos required tools Commit: 1c6be4ed0464373db7a5a1a6a780f17bc12dbcf5 https://github.com/ehb54/ultrascan3/commit/1c6be4ed0464373db7a5a1a6a780f17bc12dbcf5 Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M admin/cmake/packaging/linux/LinuxDeploy.cmake Log Message: ----------- fix: missing library in pkg Commit: 216860fe02c9358e021e6a54b84aa2aa0e462a99 https://github.com/ehb54/ultrascan3/commit/216860fe02c9358e021e6a54b84aa2aa0e462a99 Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M scripts/build.sh Log Message: ----------- fix: rcc error Commit: be038ad56e172897c3f18b8a1319fced62a708a0 https://github.com/ehb54/ultrascan3/commit/be038ad56e172897c3f18b8a1319fced62a708a0 Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M CMakeLists.txt M admin/cmake/packaging/linux/LinuxDeploy.cmake Log Message: ----------- fix: update plugin directory Commit: 87c38bbe59db529cf02b7887c7bfe57ebc8e62da https://github.com/ehb54/ultrascan3/commit/87c38bbe59db529cf02b7887c7bfe57ebc8e62da Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M admin/cmake/packaging/linux/LinuxDeploy.cmake Log Message: ----------- add: readme Commit: f4323bc883bb8996c6e627bfb9b8295063ef176f https://github.com/ehb54/ultrascan3/commit/f4323bc883bb8996c6e627bfb9b8295063ef176f Author: aaron-auc Date: 2026-03-08 (Sun, 08 Mar 2026) Changed paths: M CMakeLists.txt M CMakePresets.json M admin/cmake/GenerateVersion.cmake A admin/cmake/packaging/linux/LinuxHpcDeploy.cmake A admin/cmake/packaging/linux/LinuxHpcPkg.cmake A admin/cmake/packaging/macos/MacHpcDeploy.cmake A admin/cmake/packaging/macos/MacHpcPkg.cmake M programs/CMakeLists.txt M programs/us_mpi_analysis/2dsa_worker.cpp M programs/us_mpi_analysis/CMakeLists.txt M programs/us_mpi_analysis/pcsa_worker.cpp M programs/us_mpi_analysis/us_mpi_analysis.cpp M scripts/build.sh Log Message: ----------- fix: hpc build Commit: c515903ce23bec6067e47ed10ae663518f3de230 https://github.com/ehb54/ultrascan3/commit/c515903ce23bec6067e47ed10ae663518f3de230 Author: aaron-auc Date: 2026-03-08 (Sun, 08 Mar 2026) Changed paths: M scripts/build.ps1 M scripts/build.sh Log Message: ----------- mod: use all cores with CI runners Commit: 7a8a012754d242634bca20501e1a1c94be231d6c https://github.com/ehb54/ultrascan3/commit/7a8a012754d242634bca20501e1a1c94be231d6c Author: aaron-auc Date: 2026-03-08 (Sun, 08 Mar 2026) Changed paths: M CMakePresets.json M scripts/build.ps1 M scripts/build.sh Log Message: ----------- fix: CI runners and hpc build Commit: 5277352caa620430b2bf8a580f9f10d43218d930 https://github.com/ehb54/ultrascan3/commit/5277352caa620430b2bf8a580f9f10d43218d930 Author: aaron-auc Date: 2026-03-08 (Sun, 08 Mar 2026) Changed paths: M scripts/build.sh Log Message: ----------- fix: not all dependencies found Commit: 60b1b16425fcda080aea3bfac20f1abad9e8bc32 https://github.com/ehb54/ultrascan3/commit/60b1b16425fcda080aea3bfac20f1abad9e8bc32 Author: aaron-auc Date: 2026-03-08 (Sun, 08 Mar 2026) Changed paths: M scripts/build.sh Log Message: ----------- fix: dependenies added Commit: 3b29d9afdd3d29c7e33af7f0b989ccf1c642bc8c https://github.com/ehb54/ultrascan3/commit/3b29d9afdd3d29c7e33af7f0b989ccf1c642bc8c Author: aaron-auc Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: A scripts/bootstrap-deps.sh A scripts/bootstrap-macos.sh A scripts/bootstrap-windows.ps1 A scripts/bootstrap.bat M scripts/build.ps1 M scripts/build.sh Log Message: ----------- fix: bootstrap deps Commit: 4975707ad3f001539ceeea7d716043118c23d07a https://github.com/ehb54/ultrascan3/commit/4975707ad3f001539ceeea7d716043118c23d07a Author: aaron-auc Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: A buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake A buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json M scripts/bootstrap-deps.sh Log Message: ----------- fix: qt5 tools overlay Commit: e7e0613e5d7d234f835e4e9490416e0a7f5b9803 https://github.com/ehb54/ultrascan3/commit/e7e0613e5d7d234f835e4e9490416e0a7f5b9803 Author: aaron-auc Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: M scripts/bootstrap-deps.sh M scripts/bootstrap-macos.sh M scripts/build.sh A us-build Log Message: ----------- add: bash wrapper Commit: b93b52b3acb64a650854a16f3983473f49becee9 https://github.com/ehb54/ultrascan3/commit/b93b52b3acb64a650854a16f3983473f49becee9 Author: aaron-auc Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: M scripts/build.ps1 Log Message: ----------- mod: make profile positional for powershell Commit: dfec7b06f5af8e9ad31d7b4c682197a103bd5fb1 https://github.com/ehb54/ultrascan3/commit/dfec7b06f5af8e9ad31d7b4c682197a103bd5fb1 Author: aaron-auc Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: M scripts/bootstrap-windows.ps1 M scripts/build.bat Log Message: ----------- fix: convert -- pkg to - pkg for windows Commit: 2f98f90faa5b640815d571359919c09034a266c1 https://github.com/ehb54/ultrascan3/commit/2f98f90faa5b640815d571359919c09034a266c1 Author: aaron-auc Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: M scripts/bootstrap-windows.ps1 Log Message: ----------- fix: getwin Commit: 7249d6b2d508075f65d61b2643639c789db68d8e https://github.com/ehb54/ultrascan3/commit/7249d6b2d508075f65d61b2643639c789db68d8e Author: aaron-auc Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: M scripts/bootstrap-windows.ps1 Log Message: ----------- fix: add chocolatey fallback for ci Commit: fd116b43987cda26a351438dcd70082a7c27ce17 https://github.com/ehb54/ultrascan3/commit/fd116b43987cda26a351438dcd70082a7c27ce17 Author: emre brookes Date: 2026-03-10 (Tue, 10 Mar 2026) Changed paths: M gui/us_convert_gui.cpp M gui/us_convert_gui.h M programs/us_mwl_species_sim/us_mwl_species_sim.cpp M programs/us_pseudo_absorbance/us_convert_scan.cpp M programs/us_pseudo_absorbance/us_convert_scan.h M test/utils/test_us_time_state.cpp M utils/us_astfem_math.cpp M utils/us_astfem_math.h M utils/us_cfa_data.cpp M utils/us_time_state.cpp M utils/us_time_state.h M utils/us_xpn_data.cpp Log Message: ----------- Merge branch 'main' into ehb54-issue-670 Commit: 45140eeddd64e45d6b5c87061f79c9aefc3ce25e https://github.com/ehb54/ultrascan3/commit/45140eeddd64e45d6b5c87061f79c9aefc3ce25e Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json M programs/us/revision.sh M scripts/build.ps1 Log Message: ----------- fix: windows CI vcpkg cache usage Commit: 1ec6ec52d283b6c710abe095ebcad82139a64ae3 https://github.com/ehb54/ultrascan3/commit/1ec6ec52d283b6c710abe095ebcad82139a64ae3 Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M CMakePresets.json M scripts/build.sh Log Message: ----------- add: macos intel build Commit: 39ad33c5c781b0f007822456803df7d591795fe7 https://github.com/ehb54/ultrascan3/commit/39ad33c5c781b0f007822456803df7d591795fe7 Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M scripts/build.ps1 Log Message: ----------- fix: vcpkg CI handling Commit: 7fad3a4dfaa187ad4eb94554cedbe3ec6cf56773 https://github.com/ehb54/ultrascan3/commit/7fad3a4dfaa187ad4eb94554cedbe3ec6cf56773 Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M programs/us_mpi_analysis/revision.sh Log Message: ----------- fix: change revision to git_revision to be consistent with other programs Commit: b4417a6bfd0cfcc840668d21e88718e957734e47 https://github.com/ehb54/ultrascan3/commit/b4417a6bfd0cfcc840668d21e88718e957734e47 Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: R README.linguist M etc/etc_belongs_list.txt R etc/us3-GMP-icon-128x128.ico M etc/us3-GMP-icon-128x128.png R etc/us3-GMP-icon-128x128.xpm R etc/us3-GMP-icon-32x32.ico R etc/us3-GMP-icon-32x32.png R etc/us3-GMP-icon-32x32.xpm R etc/us3-GMP-icon-48x48.ico R etc/us3-GMP-icon-48x48.png R etc/us3-GMP-icon-48x48.xpm M gui/libus_gui.pro M gui/us_convert_gui.cpp M gui/us_convert_gui.h M programs/us/us.pro R programs/us/us_de_DE.ts M programs/us_config/us_config.pro M programs/us_mwl_species_sim/us_mwl_species_sim.cpp M programs/us_pseudo_absorbance/us_convert_scan.cpp M programs/us_pseudo_absorbance/us_convert_scan.h R propignore R proppng R proptext R qwtplot3d/lingua_de.ts M test/utils/test_us_crypto.cpp M test/utils/test_us_time_state.cpp M utils/libus_utils.pro M utils/us_astfem_math.cpp M utils/us_astfem_math.h M utils/us_cfa_data.cpp M utils/us_crypto.cpp M utils/us_crypto.h M utils/us_time_state.cpp M utils/us_time_state.h M utils/us_xpn_data.cpp Log Message: ----------- Merge branch 'main' into 527-enhancement-sphinx-migration-2 Commit: f0c8ede548bfb3a6f2380059dd1aacf09c6a7883 https://github.com/ehb54/ultrascan3/commit/f0c8ede548bfb3a6f2380059dd1aacf09c6a7883 Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M scripts/bootstrap-macos.sh Log Message: ----------- fix: add missing dependencies Commit: 09eeb4bec49931c943f732f024f1166b882c3e3a https://github.com/ehb54/ultrascan3/commit/09eeb4bec49931c943f732f024f1166b882c3e3a Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: R README.linguist M etc/etc_belongs_list.txt R etc/us3-GMP-icon-128x128.ico M etc/us3-GMP-icon-128x128.png R etc/us3-GMP-icon-128x128.xpm R etc/us3-GMP-icon-32x32.ico R etc/us3-GMP-icon-32x32.png R etc/us3-GMP-icon-32x32.xpm R etc/us3-GMP-icon-48x48.ico R etc/us3-GMP-icon-48x48.png R etc/us3-GMP-icon-48x48.xpm M gui/libus_gui.pro M gui/us_convert_gui.cpp M gui/us_convert_gui.h M programs/us/us.pro R programs/us/us_de_DE.ts M programs/us_config/us_config.pro M programs/us_mwl_species_sim/us_mwl_species_sim.cpp M programs/us_pseudo_absorbance/us_convert_scan.cpp M programs/us_pseudo_absorbance/us_convert_scan.h R propignore R proppng R proptext R qwtplot3d/lingua_de.ts M test/utils/test_us_crypto.cpp M test/utils/test_us_time_state.cpp M utils/libus_utils.pro M utils/us_astfem_math.cpp M utils/us_astfem_math.h M utils/us_cfa_data.cpp M utils/us_crypto.cpp M utils/us_crypto.h M utils/us_time_state.cpp M utils/us_time_state.h M utils/us_xpn_data.cpp Log Message: ----------- Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2 Commit: 51ba58286eaaa41af877ff9330d19560633e1c16 https://github.com/ehb54/ultrascan3/commit/51ba58286eaaa41af877ff9330d19560633e1c16 Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M scripts/bootstrap-macos.sh Log Message: ----------- fix: add missing dependencies Commit: 21a5f4a7ad52a67040b9426ed30a082038813498 https://github.com/ehb54/ultrascan3/commit/21a5f4a7ad52a67040b9426ed30a082038813498 Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M scripts/build.sh Log Message: ----------- mod: reduce linux disk space usage Commit: 12b7e30a17e5c86f8e9d4960f7e8da86d67b3b4f https://github.com/ehb54/ultrascan3/commit/12b7e30a17e5c86f8e9d4960f7e8da86d67b3b4f Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M scripts/build.sh Log Message: ----------- mod: removed vcpkg folder creation Commit: ece15a944fb55077213717e00f084056004367a7 https://github.com/ehb54/ultrascan3/commit/ece15a944fb55077213717e00f084056004367a7 Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M admin/cmake/packaging/windows/WinDeploy.cmake Log Message: ----------- mod: change qt warnings an error to force build to stop Commit: 80474c759ff865d72c8c6043ba64d38bf98e1e15 https://github.com/ehb54/ultrascan3/commit/80474c759ff865d72c8c6043ba64d38bf98e1e15 Author: aaron-auc Date: 2026-03-12 (Thu, 12 Mar 2026) Changed paths: M scripts/build.sh Log Message: ----------- mod: reduce to 2 cores for ubuntu Commit: e9f0952dea5d8bb82a866082b546997a3e457ec4 https://github.com/ehb54/ultrascan3/commit/e9f0952dea5d8bb82a866082b546997a3e457ec4 Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-12 (Thu, 12 Mar 2026) Changed paths: M gui/us_extinction_gui.cpp M gui/us_extinction_gui.h M programs/us_legacy_converter/us_legacy_converter.cpp M programs/us_legacy_converter/us_legacy_converter.h M programs/us_query_rmsd/us_query_rmsd.cpp M programs/us_query_rmsd/us_query_rmsd.h M programs/us_ramp/us_ramp_gui.h M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- Merge branch 'main' into ehb54-issue-670 Commit: c4af75ba6a8e299d819034f87528f9d6997e469f https://github.com/ehb54/ultrascan3/commit/c4af75ba6a8e299d819034f87528f9d6997e469f Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-12 (Thu, 12 Mar 2026) Changed paths: M gui/us_extinction_gui.cpp M gui/us_extinction_gui.h M programs/us_legacy_converter/us_legacy_converter.cpp M programs/us_legacy_converter/us_legacy_converter.h M programs/us_query_rmsd/us_query_rmsd.cpp M programs/us_query_rmsd/us_query_rmsd.h M programs/us_ramp/us_ramp_gui.h M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- Merge branch 'main' into 527-enhancement-sphinx-migration-2 Commit: 0f81d3f0d1fb567b1e570ed90147a17f49e57c1f https://github.com/ehb54/ultrascan3/commit/0f81d3f0d1fb567b1e570ed90147a17f49e57c1f Author: aaron-auc Date: 2026-03-12 (Thu, 12 Mar 2026) Changed paths: M CMakeLists.txt M CMakePresets.json M admin/cmake/packaging/windows/WinDeploy.cmake R scripts/bootstrap-deps.sh A scripts/bootstrap-linux.sh M scripts/bootstrap-macos.sh M scripts/build.sh M utils/CMakeLists.txt M vcpkg.json Log Message: ----------- mod: move checks to bootstrap Commit: 4ff50388194860753c3e8bc4d697e944ce0f1641 https://github.com/ehb54/ultrascan3/commit/4ff50388194860753c3e8bc4d697e944ce0f1641 Author: aaron-auc Date: 2026-03-12 (Thu, 12 Mar 2026) Changed paths: M gui/us_extinction_gui.cpp M gui/us_extinction_gui.h M programs/us_legacy_converter/us_legacy_converter.cpp M programs/us_legacy_converter/us_legacy_converter.h M programs/us_query_rmsd/us_query_rmsd.cpp M programs/us_query_rmsd/us_query_rmsd.h M programs/us_ramp/us_ramp_gui.h M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2 Commit: 82349a16124679984a45c562feb3f2583dbdb531 https://github.com/ehb54/ultrascan3/commit/82349a16124679984a45c562feb3f2583dbdb531 Author: aaron-auc Date: 2026-03-13 (Fri, 13 Mar 2026) Changed paths: M scripts/build.sh Log Message: ----------- mod: add platform safe check Commit: 8a2d982f8e8906a85bfe363487622d59a1ff361e https://github.com/ehb54/ultrascan3/commit/8a2d982f8e8906a85bfe363487622d59a1ff361e Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M gui/us_analyte_gui.cpp M gui/us_plot3d.cpp M programs/CMakeLists.txt M programs/us/CMakeLists.txt M utils/us_timer.h M vcpkg.json Log Message: ----------- Merge branch 'main' into 527-enhancement-sphinx-migration-2 Commit: 6d361b64fc8f314fe8399f028d2c79ef9d0e417b https://github.com/ehb54/ultrascan3/commit/6d361b64fc8f314fe8399f028d2c79ef9d0e417b Author: aaron-auc Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M scripts/build.sh Log Message: ----------- mod: clean after build set Commit: 5b81b9c41fc973670663047afba591d6edaa898c https://github.com/ehb54/ultrascan3/commit/5b81b9c41fc973670663047afba591d6edaa898c Author: aaron-auc Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M admin/cmake/packaging/windows/WinDeploy.cmake Log Message: ----------- fix: packaging Commit: 10e620037c83dddc66d518ab28e33eb36c3e3c17 https://github.com/ehb54/ultrascan3/commit/10e620037c83dddc66d518ab28e33eb36c3e3c17 Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M gui/us_analyte_gui.cpp M gui/us_plot3d.cpp M programs/CMakeLists.txt M programs/us/CMakeLists.txt M utils/us_timer.h M vcpkg.json Log Message: ----------- Merge branch 'main' into ehb54-issue-670 Commit: 3afad49842a3c53daabf741428b683cb8e86837c https://github.com/ehb54/ultrascan3/commit/3afad49842a3c53daabf741428b683cb8e86837c Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-15 (Sun, 15 Mar 2026) Changed paths: M programs/us_config/us_admin.cpp Log Message: ----------- Merge branch 'main' into 527-enhancement-sphinx-migration-2 Commit: afdf12344c5555d4130fa310bf352f2c27bbdadc https://github.com/ehb54/ultrascan3/commit/afdf12344c5555d4130fa310bf352f2c27bbdadc Author: aaron-auc Date: 2026-03-15 (Sun, 15 Mar 2026) Changed paths: A buildsys/vcpkg/overlay-ports/qttools.disable/devendor-litehtml.patch A buildsys/vcpkg/overlay-ports/qttools.disable/portfile.cmake A buildsys/vcpkg/overlay-ports/qttools.disable/vcpkg.json A buildsys/vcpkg/overlay-ports/qttools.disable/windeployqt.debug.bat R buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch R buildsys/vcpkg/overlay-ports/qttools/portfile.cmake R buildsys/vcpkg/overlay-ports/qttools/vcpkg.json R buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat Log Message: ----------- test remove qttools overlay Commit: 691c2112f822e5f82f6f153dbb8d568663367a2c https://github.com/ehb54/ultrascan3/commit/691c2112f822e5f82f6f153dbb8d568663367a2c Author: aaron-auc Date: 2026-03-15 (Sun, 15 Mar 2026) Changed paths: M programs/us_config/us_admin.cpp Log Message: ----------- Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2 Commit: 5fbfc3b610b9edaa535c2cdde484daba5a1f6d23 https://github.com/ehb54/ultrascan3/commit/5fbfc3b610b9edaa535c2cdde484daba5a1f6d23 Author: aaron-auc Date: 2026-03-16 (Mon, 16 Mar 2026) Changed paths: M admin/cmake/packaging/windows/WinDeploy.cmake A buildsys/vcpkg/overlay-ports/qt5-tools/fix-pkgconfig-qt5uiplugin-not-found.patch A buildsys/vcpkg/overlay-ports/qt5-tools/fix-spawnvp-argv.patch A buildsys/vcpkg/overlay-ports/qt5-tools/libclang.patch M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake M buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json M scripts/bootstrap-windows.ps1 M scripts/build.ps1 Log Message: ----------- fix: restore patch for qt5-tools Commit: ee9314b8a10555d579148933ce5fb59dc77f25a5 https://github.com/ehb54/ultrascan3/commit/ee9314b8a10555d579148933ce5fb59dc77f25a5 Author: aaron-auc Date: 2026-03-16 (Mon, 16 Mar 2026) Changed paths: M admin/cmake/packaging/windows/WinDeploy.cmake M scripts/bootstrap-windows.ps1 Log Message: ----------- fix: nasm check and add supporting dlls to installation Commit: f9860bd8d1ac6f5c5c4a4b0dd90e3cb7f09bd131 https://github.com/ehb54/ultrascan3/commit/f9860bd8d1ac6f5c5c4a4b0dd90e3cb7f09bd131 Author: aaron-auc Date: 2026-03-16 (Mon, 16 Mar 2026) Changed paths: M scripts/build.ps1 M vcpkg.json Log Message: ----------- mod: check path length is too long on qt 5 Commit: 4365eb02a1c29a38a42fe848da39deab69e67715 https://github.com/ehb54/ultrascan3/commit/4365eb02a1c29a38a42fe848da39deab69e67715 Author: aaron-auc Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: R buildsys/vcpkg/overlay-ports/qttools.disable/devendor-litehtml.patch R buildsys/vcpkg/overlay-ports/qttools.disable/portfile.cmake R buildsys/vcpkg/overlay-ports/qttools.disable/vcpkg.json R buildsys/vcpkg/overlay-ports/qttools.disable/windeployqt.debug.bat Log Message: ----------- del: remove unused overlay Commit: efe1a2ba8b277a19ae50d1262c14239f9f9dac81 https://github.com/ehb54/ultrascan3/commit/efe1a2ba8b277a19ae50d1262c14239f9f9dac81 Author: aaron-auc Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M scripts/bootstrap-linux.sh Log Message: ----------- add: missing linux packages libsm-dev libice-dev Commit: 84f1faaa0819a233d3023bd3ae0d75d2ccaf6430 https://github.com/ehb54/ultrascan3/commit/84f1faaa0819a233d3023bd3ae0d75d2ccaf6430 Author: aaron-auc Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: A buildsys/vcpkg/overlay-ports/mpg123/fix-arm64-no-fpu-neon64.patch A buildsys/vcpkg/overlay-ports/mpg123/have-fpu.diff A buildsys/vcpkg/overlay-ports/mpg123/pkgconfig.diff A buildsys/vcpkg/overlay-ports/mpg123/portfile.cmake A buildsys/vcpkg/overlay-ports/mpg123/vcpkg.json Log Message: ----------- add: port overlay for linux arm fix Commit: 501adedca88f7d331c3a70d62c04cc4992f86979 https://github.com/ehb54/ultrascan3/commit/501adedca88f7d331c3a70d62c04cc4992f86979 Author: aaron-auc Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M admin/cmake/packaging/macos/MacDeploy.cmake M admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake A admin/cmake/packaging/macos/StageAssistantDev.cmake M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake A buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch A buildsys/vcpkg/overlay-ports/qttools/port.data.cmake A buildsys/vcpkg/overlay-ports/qttools/portfile.cmake A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake M programs/us/CMakeLists.txt M scripts/build.sh Log Message: ----------- add: overlay port for qttools Commit: e1e93704ad79bf8d43c6c4eba74a4c90b1dc1fdf https://github.com/ehb54/ultrascan3/commit/e1e93704ad79bf8d43c6c4eba74a4c90b1dc1fdf Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h M test/utils/test_us_crypto.cpp M utils/us_crypto.cpp Log Message: ----------- Merge branch 'main' into 527-enhancement-sphinx-migration-2 Commit: b1fbfbcbd47cd296b70ccd6ac9178c4efd6b4a4e https://github.com/ehb54/ultrascan3/commit/b1fbfbcbd47cd296b70ccd6ac9178c4efd6b4a4e Author: alexsav815 Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h Log Message: ----------- GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk... Commit: a3b6b6a58f4f1d94a9268cc04a014d3ce1a1471e https://github.com/ehb54/ultrascan3/commit/a3b6b6a58f4f1d94a9268cc04a014d3ce1a1471e Author: alexsav815 Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp Log Message: ----------- [1]GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk... Commit: 992f15191ea67cf8c4dc85736429ab5939967d2f https://github.com/ehb54/ultrascan3/commit/992f15191ea67cf8c4dc85736429ab5939967d2f Author: alexsav815 Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp Log Message: ----------- [2]GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk... Commit: 50c4d0f4452a8f5f8052b4e63ae06abb11f8fe89 https://github.com/ehb54/ultrascan3/commit/50c4d0f4452a8f5f8052b4e63ae06abb11f8fe89 Author: alexsav815 Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp Log Message: ----------- [3]GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk... Commit: 81695e7ad3f97f7cd46fe42d8148a8911fc3fc43 https://github.com/ehb54/ultrascan3/commit/81695e7ad3f97f7cd46fe42d8148a8911fc3fc43 Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M programs/us_analysis_profile/us_anapro_utils.cpp M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h M utils/us_run_protocol.cpp M utils/us_run_protocol.h Log Message: ----------- Merge branch 'main' into 527-enhancement-sphinx-migration-2 Commit: bed8960f5d491db022be512a82491fc248abcbf9 https://github.com/ehb54/ultrascan3/commit/bed8960f5d491db022be512a82491fc248abcbf9 Author: aaron-auc Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M CMakeLists.txt M doc/manual/CMakeLists.txt M doc/manual/README.md M doc/manual/source/conf.py M programs/us/CMakeLists.txt Log Message: ----------- mod: PR comments addressed Commit: 5205cb5542bd366b63909189ac9691c6473fc071 https://github.com/ehb54/ultrascan3/commit/5205cb5542bd366b63909189ac9691c6473fc071 Author: aaron-auc Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h M programs/us_analysis_profile/us_anapro_utils.cpp M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h M test/utils/test_us_crypto.cpp M utils/us_crypto.cpp M utils/us_run_protocol.cpp M utils/us_run_protocol.h Log Message: ----------- Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2 Commit: 76e772666ba74f76a6d525444b9c0cd8f9d01e76 https://github.com/ehb54/ultrascan3/commit/76e772666ba74f76a6d525444b9c0cd8f9d01e76 Author: aaron-auc Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M CMakeLists.txt M doc/manual/CMakeLists.txt Log Message: ----------- fix: skip subdirectory doc/manual if hpc or documentation off Commit: abe431ae514b67270d74e84b599ef069673c1164 https://github.com/ehb54/ultrascan3/commit/abe431ae514b67270d74e84b599ef069673c1164 Author: alexsav815 Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h Log Message: ----------- GMP-ABDE -- 4. EDIT points addressed for ticket #792... Commit: b1c5c0de414d093440081fca1a975a4e1118a9d1 https://github.com/ehb54/ultrascan3/commit/b1c5c0de414d093440081fca1a975a4e1118a9d1 Author: alexsav815 Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- [1]GMP-ABDE -- 4. EDIT points addressed for ticket #792... Commit: c53782335d3f1e5fc4fc2ea6f97ee3d64c79389b https://github.com/ehb54/ultrascan3/commit/c53782335d3f1e5fc4fc2ea6f97ee3d64c79389b Author: alexsav815 Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- [2]GMP-ABDE -- 4. EDIT points addressed for ticket #792... Commit: 672254d0e59b1e555aa0aa2506e7871bb188c5d4 https://github.com/ehb54/ultrascan3/commit/672254d0e59b1e555aa0aa2506e7871bb188c5d4 Author: alexsav815 Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- [3]GMP-ABDE -- 4. EDIT points addressed for ticket #792... Commit: 05b438d52cffda88429e278cae66fead57b193ec https://github.com/ehb54/ultrascan3/commit/05b438d52cffda88429e278cae66fead57b193ec Author: aaron-auc Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M CMakePresets.json M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake R doc/manual/source/conf.py-orig.081225 M gui/CMakeLists.txt M programs/us_helpdaemon/us_helpdaemon.cpp Log Message: ----------- fix: Reformat CMakePresets.json to multi-line style; add US3_NO_DB=ON to all HPC presets; fix GLU elseif(UNIX) branch; drop dead Windows assistant path check. Commit: 21882cd1fd05a489de72b721e1e4bebaa8fb9ac5 https://github.com/ehb54/ultrascan3/commit/21882cd1fd05a489de72b721e1e4bebaa8fb9ac5 Author: aaron-auc Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M CMakeLists.txt M doc/manual/CMakeLists.txt M programs/us/CMakeLists.txt Log Message: ----------- fix: pr comments Commit: 39a94736afc6e6b1450549833138c494fc1ff36b https://github.com/ehb54/ultrascan3/commit/39a94736afc6e6b1450549833138c494fc1ff36b Author: aaron-auc Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M doc/manual/Makefile Log Message: ----------- fix: make all moved to top Commit: 5470c9ac380ea0b9e9e522bcb85e831bf0e466fd https://github.com/ehb54/ultrascan3/commit/5470c9ac380ea0b9e9e522bcb85e831bf0e466fd Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M gui/us_solution_gui.cpp M gui/us_solution_gui.h Log Message: ----------- Enforce analyte for solution in us_solution_gui Commit: cb5e49b544fddf3329fd8662619f4a524628a69e https://github.com/ehb54/ultrascan3/commit/cb5e49b544fddf3329fd8662619f4a524628a69e Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M gui/us_solution_gui.cpp M gui/us_solution_gui.h Log Message: ----------- Update comments, fix function signature Commit: 01301f4fb775a852d7048cf88a308ff8dd796f5a https://github.com/ehb54/ultrascan3/commit/01301f4fb775a852d7048cf88a308ff8dd796f5a Author: alexsav815 Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M programs/us_abde/us_norm_profile.cpp Log Message: ----------- GMP-ABDE -- 5. Analysis addressed for ticket #792... Commit: 3ba588420b506827b73516e8dfa8cd4ae9b2ff28 https://github.com/ehb54/ultrascan3/commit/3ba588420b506827b73516e8dfa8cd4ae9b2ff28 Author: alexsav815 Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M programs/us_abde/us_norm_profile.cpp Log Message: ----------- [2]GMP-ABDE -- 5. Analysis addressed for ticket #792... Commit: 55ad77b5ea4726efff74c2e3da2b763af7b12070 https://github.com/ehb54/ultrascan3/commit/55ad77b5ea4726efff74c2e3da2b763af7b12070 Author: aaron-auc Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M CMakeLists.txt M CMakePresets.json M doc/manual/CMakeLists.txt Log Message: ----------- fix: presets Commit: ad1ceab5b0c51349e506ad4feebf2d0e9442b18f https://github.com/ehb54/ultrascan3/commit/ad1ceab5b0c51349e506ad4feebf2d0e9442b18f Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-21 (Sat, 21 Mar 2026) Changed paths: M gui/us_solution_gui.cpp Log Message: ----------- Show warning before accepting a solution without analyte or common vbar Commit: 7bfe32ca6b7830a5b30fc3e995feb35daccc7460 https://github.com/ehb54/ultrascan3/commit/7bfe32ca6b7830a5b30fc3e995feb35daccc7460 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-21 (Sat, 21 Mar 2026) Changed paths: M utils/us_astfem_rsa.cpp Log Message: ----------- Add band_forming check for low concentration flag Commit: fb3b2bbbe972a00864dd68b72b5da64234516056 https://github.com/ehb54/ultrascan3/commit/fb3b2bbbe972a00864dd68b72b5da64234516056 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-21 (Sat, 21 Mar 2026) Changed paths: M programs/us_astfem_sim/us_astfem_sim.cpp Log Message: ----------- Fix y-axis scale for band-forming plots Commit: 8aeda75b69a9c2d9df2af035ea7265bb93bdacef https://github.com/ehb54/ultrascan3/commit/8aeda75b69a9c2d9df2af035ea7265bb93bdacef Author: aaron-auc Date: 2026-03-21 (Sat, 21 Mar 2026) Changed paths: A admin/cmake/README.md A admin/cmake/packaging/README.md A pkg/macos/README.md Log Message: ----------- mod: readmes Commit: 81c3a3a5d2a743645b19098027b58ecdc429d634 https://github.com/ehb54/ultrascan3/commit/81c3a3a5d2a743645b19098027b58ecdc429d634 Author: aaron-auc Date: 2026-03-22 (Sun, 22 Mar 2026) Changed paths: R doc/manual/source/2dsa/2dsa_adv.rst R doc/manual/source/2dsa/2dsa_analys.rst R 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programs/us_mpi_analysis/pcsa_worker.cpp M programs/us_mpi_analysis/revision.sh M programs/us_mpi_analysis/us_mpi_analysis.cpp M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h M qwtplot3d/CMakeLists.txt A scripts/bootstrap-linux.sh A scripts/bootstrap-macos.sh A scripts/bootstrap-windows.ps1 A scripts/bootstrap.bat M scripts/build.bat M scripts/build.ps1 M scripts/build.sh M test/utils/test_us_crypto.cpp A us-build M utils/CMakeLists.txt M utils/us_crypto.cpp M utils/us_memory.cpp M utils/us_run_protocol.cpp M utils/us_run_protocol.h M vcpkg.json Log Message: ----------- Merge branch 'main' into ehb54-issue-670 Commit: a3d889c69f7012ff5840a86814780d3490d5ea2a https://github.com/ehb54/ultrascan3/commit/a3d889c69f7012ff5840a86814780d3490d5ea2a Author: emre brookes Date: 2026-03-24 (Tue, 24 Mar 2026) Changed paths: M programs/us/revision.sh Log Message: ----------- Merge pull request #377 from ehb54/ehb54-issue-670 fix revision.sh checks osx/linux compat. 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A admin/cmake/packaging/windows/WinPkg.cmake A admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake M admin/cmake/toolchain.cmake A buildsys/vcpkg/overlay-ports/mpg123/fix-arm64-no-fpu-neon64.patch A buildsys/vcpkg/overlay-ports/mpg123/have-fpu.diff A buildsys/vcpkg/overlay-ports/mpg123/pkgconfig.diff A buildsys/vcpkg/overlay-ports/mpg123/portfile.cmake A buildsys/vcpkg/overlay-ports/mpg123/vcpkg.json M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake A buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch A buildsys/vcpkg/overlay-ports/qttools/port.data.cmake A buildsys/vcpkg/overlay-ports/qttools/portfile.cmake A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake R doc/manual/2dsa/2dsa.body R doc/manual/2dsa/2dsa_advan.body R doc/manual/2dsa/2dsa_analvv.body R doc/manual/2dsa/2dsa_analys.body M doc/manual/CMakeLists.txt M doc/manual/Makefile M 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vcpkg.json Log Message: ----------- Merge branch 'main' into lukas/us_astfem_sim_bfe_fix Commit: e219670a84259a14eabcbd6567f410caa19460e4 https://github.com/ehb54/ultrascan3/commit/e219670a84259a14eabcbd6567f410caa19460e4 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-26 (Thu, 26 Mar 2026) Changed paths: M makeall.sh Log Message: ----------- Fix makeall.sh permissions Commit: ffbfc46c1f6425db8f285c8ebfe83093848eb1b6 https://github.com/ehb54/ultrascan3/commit/ffbfc46c1f6425db8f285c8ebfe83093848eb1b6 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-26 (Thu, 26 Mar 2026) Changed paths: M qmakeall.sh Log Message: ----------- Fix qmakeall.sh permissions Commit: ce69cccd373c62d3682696c7c1e3afbec47ca21c https://github.com/ehb54/ultrascan3/commit/ce69cccd373c62d3682696c7c1e3afbec47ca21c Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-27 (Fri, 27 Mar 2026) Changed paths: M gui/us_solution_gui.cpp M gui/us_solution_gui.h Log Message: ----------- Merge pull request #397 from ehb54/lukas/us_solution_analyte Enforce analyte for solution in us_solution_gui Commit: cdf7099448e0de34a4e877280839f6acfacf5596 https://github.com/ehb54/ultrascan3/commit/cdf7099448e0de34a4e877280839f6acfacf5596 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-27 (Fri, 27 Mar 2026) Changed paths: M gui/us_solution_gui.cpp M gui/us_solution_gui.h Log Message: ----------- Merge branch 'main' into lukas/us_astfem_sim_bfe_fix Commit: b543a92af379330a545e7dcc63e12daaf3d45239 https://github.com/ehb54/ultrascan3/commit/b543a92af379330a545e7dcc63e12daaf3d45239 Author: alexsav815 Date: 2026-03-27 (Fri, 27 Mar 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- GMP-ABDE -- 4. 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vcpkg.json Log Message: ----------- Merge pull request #401 from ehb54/main pull main into alexey-dev-issue792 Commit: 82d4d191eb9afe4cf103b3792c6730f51eb8bafa https://github.com/ehb54/ultrascan3/commit/82d4d191eb9afe4cf103b3792c6730f51eb8bafa Author: alexsav815 Date: 2026-04-02 (Thu, 02 Apr 2026) Changed paths: M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h Log Message: ----------- GMP-ABDE -- 4. EDIT: ask user if only last scan was selected for each channel before accepting new edit parameters... Commit: e58b784f94dc22571d37ac77acdc90c148ee0004 https://github.com/ehb54/ultrascan3/commit/e58b784f94dc22571d37ac77acdc90c148ee0004 Author: alexsav815 Date: 2026-04-02 (Thu, 02 Apr 2026) Changed paths: M programs/us_abde/us_norm_profile.cpp M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h Log Message: ----------- Merge pull request #398 from ehb54/alexey-dev-issue792 Alexey dev issue792: GMP-ABDE & dataDisk changes Commit: 94b9a553e412fb675ba67eea2c9f665b6207233d https://github.com/ehb54/ultrascan3/commit/94b9a553e412fb675ba67eea2c9f665b6207233d Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/CMakeLists.txt Log Message: ----------- Update CMakeLists to use `${SPHINX_PROJECT}` variables for Qt help file generation paths (`.qhp` and `.qhcp`). Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: e2d7da6bbf9fcc62e4bfa452f5ec19623488611e https://github.com/ehb54/ultrascan3/commit/e2d7da6bbf9fcc62e4bfa452f5ec19623488611e Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/requirements.txt Log Message: ----------- Add `sphinxcontrib-qthelp` and `myst-parser` to documentation requirements for Qt help and Markdown support. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 1e69c5071f55b5bc4963bc33c54c1f5978d9a86f https://github.com/ehb54/ultrascan3/commit/1e69c5071f55b5bc4963bc33c54c1f5978d9a86f Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Enhance Sphinx configuration: add version metadata generation from Git, update QtHelp/HTML output, and refine documentation structure. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 64293373d85c1dd99096806b49351207ccc8fcbd https://github.com/ehb54/ultrascan3/commit/64293373d85c1dd99096806b49351207ccc8fcbd Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/index.rst Log Message: ----------- Expand UltraScan-III documentation: add comprehensive structure, improve navigation with toctree captions, and include download link for PDF manual. 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----------- Expand UltraScan-III documentation: add detailed GMP workflow guides, including protocol development, automation, e-signatures, report generation, and data acquisition. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 518c1ee39c53443282fc68ec37cc855b2e5aa4f0 https://github.com/ehb54/ultrascan3/commit/518c1ee39c53443282fc68ec37cc855b2e5aa4f0 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update Sphinx configuration: adjust LaTeX preamble for header height and standardize document titles across output formats. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 2946f944109702806ad7b25d283b258d3702adfa https://github.com/ehb54/ultrascan3/commit/2946f944109702806ad7b25d283b258d3702adfa Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/xpn_viewer.rst Log Message: ----------- Standardize "Optima" capitalization across XPN Viewer documentation. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 34d316c7e97fcdabcf86b0939a85e834d6d878f6 https://github.com/ehb54/ultrascan3/commit/34d316c7e97fcdabcf86b0939a85e834d6d878f6 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/vhw_enhanced.rst Log Message: ----------- Fix typo in vHW documentation: correct "Wieschet" to "Weischet". Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 56e8463890e60e8501b4233fb88a6dd74f0e39f4 https://github.com/ehb54/ultrascan3/commit/56e8463890e60e8501b4233fb88a6dd74f0e39f4 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/index.rst Log Message: ----------- Update Ultrascan-III website URL in documentation. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: ff5165410e579e9e3bf489cf74532942d4dd1b6d https://github.com/ehb54/ultrascan3/commit/ff5165410e579e9e3bf489cf74532942d4dd1b6d Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/config.rst Log Message: ----------- Revise configuration documentation: clarify directory descriptions, standardize terminology, improve debugging/debug level explanations, and update Optima panel section with centered image and corrected details. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 9d89cccbd5d1edac19f5118f9f73b017b4b62768 https://github.com/ehb54/ultrascan3/commit/9d89cccbd5d1edac19f5118f9f73b017b4b62768 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/experiment/import.rst Log Message: ----------- Fix image filename in import documentation: correct "Triplicate" to "triple". Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 20e6e37595eff7fcd8c617c1ae65f049be8e60f5 https://github.com/ehb54/ultrascan3/commit/20e6e37595eff7fcd8c617c1ae65f049be8e60f5 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: A doc/manual/source/auto_index.py Log Message: ----------- Add Sphinx transform for auto-generating index entries from section titles. Commit: 78763cd74bcca991929a7dc53e314e9e61a755b6 https://github.com/ehb54/ultrascan3/commit/78763cd74bcca991929a7dc53e314e9e61a755b6 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update Sphinx configuration: add `auto_index` extension and adjust sys.path setup for dynamic module resolution. Commit: e67f33a49e896d701d7a71317d8d8b2dcebb45a9 https://github.com/ehb54/ultrascan3/commit/e67f33a49e896d701d7a71317d8d8b2dcebb45a9 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: R doc/manual/source/_static/images/optima_config_edit.png M doc/manual/source/_static/images/optima_config_new.png Log Message: ----------- Update Optima configuration images in documentation: delete outdated file and revise new image. Commit: a0df61141d5869a4c8d57ccdaf8896b84fbf1add https://github.com/ehb54/ultrascan3/commit/a0df61141d5869a4c8d57ccdaf8896b84fbf1add Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/config.rst Log Message: ----------- Standardize header formatting in configuration documentation: adjust underline lengths and update section titles for consistency. Commit: 20a795daec1d9d2b8a1e99a9522c5b0f39516f9f https://github.com/ehb54/ultrascan3/commit/20a795daec1d9d2b8a1e99a9522c5b0f39516f9f Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update Sphinx configuration: fix sys.path insertion to correctly add the current directory. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 7022886ca10e06e291974dd36c40d68886f97592 https://github.com/ehb54/ultrascan3/commit/7022886ca10e06e291974dd36c40d68886f97592 Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_adv.rst Log Message: ----------- Update doc/manual/source/2dsa/2dsa_adv.rst Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com> Commit: fec01135a70f30bb6fe279c6355c6d8d46e50f02 https://github.com/ehb54/ultrascan3/commit/fec01135a70f30bb6fe279c6355c6d8d46e50f02 Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_analys.rst Log Message: ----------- Update doc/manual/source/2dsa/2dsa_analys.rst Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com> Commit: 213c7d1f346ca9afa40c688dc5d4daae4e55d79f https://github.com/ehb54/ultrascan3/commit/213c7d1f346ca9afa40c688dc5d4daae4e55d79f Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: R doc/manual/source/_static/css/custom.css M doc/manual/source/_static/custom.css Log Message: ----------- Remove unused `custom.css` file and retain only essential styles in `custom.css` for cleaner documentation styling. Commit: f31826280b208f87c2044d91ceed9b3b725941b8 https://github.com/ehb54/ultrascan3/commit/f31826280b208f87c2044d91ceed9b3b725941b8 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/_static/images/gmp/automation/auto_edit.png M doc/manual/source/_static/images/gmp/automation/data_viewer_tin.png M doc/manual/source/_static/images/gmp/automation/lims.png M doc/manual/source/_static/images/reporter-cmenu.png M doc/manual/source/_static/images/us_project_webed.png Log Message: ----------- Downscale extremely large images Commit: 0d8aa5eb3868f4fa28393c667f367905088267c1 https://github.com/ehb54/ultrascan3/commit/0d8aa5eb3868f4fa28393c667f367905088267c1 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Add support for qthelp exclusive css file Commit: 50222b23f0a251076777810ba005c924ef2ddb00 https://github.com/ehb54/ultrascan3/commit/50222b23f0a251076777810ba005c924ef2ddb00 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: A doc/manual/source/_static/qthelp.css Log Message: ----------- Add `qthelp.css` file to define default styling for QtHelp documentation Commit: 86fcf7036c1ad44220fbb6544552d2e7458fd76e https://github.com/ehb54/ultrascan3/commit/86fcf7036c1ad44220fbb6544552d2e7458fd76e Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/3d_plot.rst M doc/manual/source/config.rst M doc/manual/source/fit_meniscus.rst M doc/manual/source/pseudo3d.rst Log Message: ----------- Standardize help text and add debug text options in configuration documentation. Commit: 38351d9b483d34b0d464cdc0a02cf4d0c711a5f0 https://github.com/ehb54/ultrascan3/commit/38351d9b483d34b0d464cdc0a02cf4d0c711a5f0 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/auto_index.py Log Message: ----------- Refine `auto_index` title processing: improve whitespace handling, enhance dimensional notation standardization, and ensure title case consistency. Commit: 881728a585525975764e48eb87de544e1a8f5ed6 https://github.com/ehb54/ultrascan3/commit/881728a585525975764e48eb87de544e1a8f5ed6 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/fe_match/index.rst Log Message: ----------- Standardize section headers and titles in FE Match documentation for consistency and improve formatting. Commit: 278eeecf4ee5b0f5e03bbcd8eae65e831f15837b https://github.com/ehb54/ultrascan3/commit/278eeecf4ee5b0f5e03bbcd8eae65e831f15837b Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_distrib_plot.rst M doc/manual/source/vhw_enhanced.rst Log Message: ----------- Standardize "van Holde-Weischet" terminology across documentation for improved consistency. Commit: 99bbe83fea89b40008e71864323759b4a75ff8cb https://github.com/ehb54/ultrascan3/commit/99bbe83fea89b40008e71864323759b4a75ff8cb Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/start_page-rpt.rst Log Message: ----------- Standardize section headers, titles, and dimensional notations in documentation for improved formatting and consistency. 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----------- Merge pull request #404 from ehb54/main update demeler-doc1 to main Commit: cd2bc2e7c99e075b63a282c8e687e6d0e111670d https://github.com/ehb54/ultrascan3/commit/cd2bc2e7c99e075b63a282c8e687e6d0e111670d Author: Demeler Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/fit_meniscus.rst Log Message: ----------- Modify capitalization in fit meniscus Commit: cc049b493eb8cb3409dd4d22051e345fd80c7982 https://github.com/ehb54/ultrascan3/commit/cc049b493eb8cb3409dd4d22051e345fd80c7982 Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/fit_meniscus.rst Log Message: ----------- Merge pull request #405 from ehb54/demeler-doc1 Demeler doc1 Commit: 6ee00313db89d52c1d7276966aa314e3c3a34219 https://github.com/ehb54/ultrascan3/commit/6ee00313db89d52c1d7276966aa314e3c3a34219 Author: alexsav815 Date: 2026-04-06 (Mon, 06 Apr 2026) Changed paths: M .github/workflows/bump-version.yml M 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doc/manual/source/combine_models.rst A doc/manual/source/common_dialogs.rst A doc/manual/source/components.rst A doc/manual/source/conf.py A doc/manual/source/config.rst A doc/manual/source/convert.rst A doc/manual/source/ddist_combine.rst A doc/manual/source/dens_match.rst A doc/manual/source/dmga_init.rst A doc/manual/source/dmga_init_constr.rst A doc/manual/source/experiment/cells.rst A doc/manual/source/experiment/general.rst A doc/manual/source/experiment/import.rst A doc/manual/source/experiment/index.rst A doc/manual/source/experiment/liveupdate.rst A doc/manual/source/experiment/optics.rst A doc/manual/source/experiment/range.rst A doc/manual/source/experiment/rotor.rst A doc/manual/source/experiment/solutions.rst A doc/manual/source/experiment/speeds.rst A doc/manual/source/experiment/submit.rst A doc/manual/source/export_legacy.rst A doc/manual/source/fe_match/fe_match_adv.rst A doc/manual/source/fe_match/fe_match_main.rst A doc/manual/source/fe_match/fe_match_simulate.rst A doc/manual/source/fe_match/index.rst A doc/manual/source/fit_meniscus.rst A doc/manual/source/ga_initialize.rst A doc/manual/source/gmp/gmp.rst A doc/manual/source/gmp/gmp_audit_trail.rst A doc/manual/source/gmp/gmp_automation.rst A doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst A doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst A doc/manual/source/gmp/gmp_data_acquisition/index.rst A doc/manual/source/gmp/gmp_protocol_development.rst A doc/manual/source/gmp/gmp_report_generator.rst A doc/manual/source/gmp/gmp_signature.rst A doc/manual/source/gmp/index.rst A doc/manual/source/grid_editor.rst A doc/manual/source/idist_combine.rst A doc/manual/source/index.rst A doc/manual/source/manage_data.rst A doc/manual/source/model_editor.rst A doc/manual/source/multi-wavelength/index.rst A doc/manual/source/multi-wavelength/mwl_species_fit.rst A doc/manual/source/multi-wavelength/mwl_species_sim.rst A doc/manual/source/multi-wavelength/mwl_spectra.rst A doc/manual/source/multi-wavelength/mwlr_viewer.rst A doc/manual/source/pcsa/index.rst A doc/manual/source/pcsa/pcsa.rst A doc/manual/source/pcsa/pcsa_adv.rst A doc/manual/source/pcsa/pcsa_analys.rst A doc/manual/source/pcsa/pcsa_mlines.rst A doc/manual/source/pcsa/pcsa_results.rst A doc/manual/source/pcsa/pcsa_rpscan.rst A doc/manual/source/predict1.rst A doc/manual/source/predict2.rst A doc/manual/source/pseudo3d.rst A doc/manual/source/register.rst A doc/manual/source/reporter.rst A doc/manual/source/requirements.txt A doc/manual/source/rmsd_query.rst A doc/manual/source/rotor.rst A doc/manual/source/rotor_calibration.rst A doc/manual/source/run_details.rst A doc/manual/source/sassoc.rst A doc/manual/source/second_moment.rst A doc/manual/source/simparams.rst A doc/manual/source/solutions/index.rst A doc/manual/source/solutions/solution_edit.rst A doc/manual/source/solutions/solution_new.rst A doc/manual/source/solutions/solution_select.rst A doc/manual/source/solutions/solution_settings.rst A doc/manual/source/start_page-abde.rst A doc/manual/source/start_page-dm.rst A doc/manual/source/start_page-int.rst A doc/manual/source/start_page-mw.rst A doc/manual/source/start_page-new.rst A doc/manual/source/start_page-rpt.rst A doc/manual/source/start_page.rst A doc/manual/source/time_derivative.rst A doc/manual/source/tmst_viewer.rst A doc/manual/source/us_buoyancy.rst A doc/manual/source/us_edit.rst A doc/manual/source/us_equiltime.rst A doc/manual/source/us_extinction.rst A doc/manual/source/us_fds_filemanager.rst A doc/manual/source/us_investigator.rst A doc/manual/source/us_modelmetrics.rst A doc/manual/source/us_project.rst A doc/manual/source/us_spectrum.rst A doc/manual/source/vhw_combine.rst A doc/manual/source/vhw_distrib_plot.rst A doc/manual/source/vhw_enhanced.rst A doc/manual/source/xpn_viewer.rst R doc/manual/template.img.body R doc/manual/tidy.conf R doc/manual/time_derivative.body R doc/manual/ultrascan3.txt R doc/manual/us_buffer.body R doc/manual/us_edit.body R doc/manual/us_edit_mwl.body R doc/manual/us_equiltime.body R doc/manual/us_fds_filemanager.body R doc/manual/us_investigator.body R doc/manual/us_modelmetrics.body R doc/manual/us_project.body R doc/manual/us_solution.body R doc/manual/uscol.body R doc/manual/uscolor2.body R doc/manual/usfont.body R doc/manual/usfont2.body R doc/manual/vhw_combine.body R doc/manual/vhw_distrib_plot.body R doc/manual/vhw_enhanced.body R doc/manual/wrapped-images.lst M gui/CMakeLists.txt M gui/us_help.cpp M gui/us_solution_gui.cpp M gui/us_solution_gui.h M makeall.sh A pkg/macos/README.md A pkg/macos/component.plist A pkg/macos/distribution.xml.in A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3 A pkg/macos/postinstall A pkg/macos/preinstall A pkg/macos/resources/Welcome.txt.in A pkg/macos/resources/background.png A pkg/macos/ultrascan_sysctl.plist A pkg/macos/uninstall.sh M programs/CMakeLists.txt M programs/us/CMakeLists.txt M programs/us/revision.sh M programs/us/us.cpp M programs/us_abde/us_norm_profile.cpp M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_astfem_sim/us_astfem_sim.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_helpdaemon/us_helpdaemon.cpp M programs/us_mpi_analysis/2dsa_worker.cpp M programs/us_mpi_analysis/CMakeLists.txt M programs/us_mpi_analysis/pcsa_worker.cpp M programs/us_mpi_analysis/revision.sh M programs/us_mpi_analysis/us_mpi_analysis.cpp M qmakeall.sh M qwtplot3d/CMakeLists.txt A scripts/bootstrap-linux.sh A scripts/bootstrap-macos.sh A scripts/bootstrap-windows.ps1 A scripts/bootstrap.bat M scripts/build.bat M scripts/build.ps1 M scripts/build.sh A us-build M utils/CMakeLists.txt M utils/us_astfem_rsa.cpp M utils/us_memory.cpp M vcpkg.json Log Message: ----------- Merge pull request #407 from ehb54/main Merge main into alexey-dev-issue798 (pdf bookmarks) Compare: https://github.com/ehb54/ultrascan3/compare/3812e8a5445e...6ee00313db89 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Mon Apr 6 15:00:21 2026 From: noreply at github.com (alexsav815) Date: Mon, 06 Apr 2026 14:00:21 -0700 Subject: [us-commits] [ehb54/ultrascan3] b99d4c: GMP: REPORT && eSignatures -- [for tesing] inject ... Message-ID: Branch: refs/heads/alexey-dev-issue798 Home: https://github.com/ehb54/ultrascan3 Commit: b99d4c07fc385103693a93678e917f93a8f4126c https://github.com/ehb54/ultrascan3/commit/b99d4c07fc385103693a93678e917f93a8f4126c Author: alexsav815 Date: 2026-04-06 (Mon, 06 Apr 2026) Changed paths: M programs/us_assign_reviewers_gmp/us_assign_reviewers_gmp.pro M programs/us_esigner_gmp/us_esigner_gmp.cpp M programs/us_esigner_gmp/us_esigner_gmp.h M programs/us_esigner_gmp/us_esigner_gmp.pro M programs/us_experiment/us_experiment.pro M programs/us_reassign_reviewers_gmp/us_reassign_reviewers_gmp.pro M programs/us_reporter_gmp/CMakeLists.txt Log Message: ----------- GMP: REPORT && eSignatures -- [for tesing] inject bookmarks based on HTML's headers into final PDF report upon e-Signatures... To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Mon Apr 6 16:21:57 2026 From: noreply at github.com (Lukas Dobler) Date: Mon, 06 Apr 2026 15:21:57 -0700 Subject: [us-commits] [ehb54/ultrascan3] f7169d: Add unit test for validating existence of help pag... Message-ID: Branch: refs/heads/lukas/manual_test/make Home: https://github.com/ehb54/ultrascan3 Commit: f7169d62eaece4fd69dd8f88ab06432a8bb390f0 https://github.com/ehb54/ultrascan3/commit/f7169d62eaece4fd69dd8f88ab06432a8bb390f0 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h A test/utils/test_us_help_pages.cpp Log Message: ----------- Add unit test for validating existence of help pages and refactor zoom stack initialization for improved consistency. Commit: a542b58b077c8629e05993705eb0967c8e2ed720 https://github.com/ehb54/ultrascan3/commit/a542b58b077c8629e05993705eb0967c8e2ed720 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .gitignore Log Message: ----------- Update .gitignore to exclude `doc/manual/build` Commit: 3841b3da9b269c931e61bd8332217ea7edafa5ce https://github.com/ehb54/ultrascan3/commit/3841b3da9b269c931e61bd8332217ea7edafa5ce Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M utils/CMakeLists.txt M utils/us_extern.h Log Message: ----------- Add static library support: define `US_UTIL_STATIC` and conditionally update `us_extern.h`. Commit: 8bd5bb513393dabe50c036ffbfe60f96a6b3ca21 https://github.com/ehb54/ultrascan3/commit/8bd5bb513393dabe50c036ffbfe60f96a6b3ca21 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M utils/us_buffer.h Log Message: ----------- Initialize `grad_form` flag to `false` in `us_buffer.h`. Commit: 923260944deb1b79e310ceb98a16effa5b5090ca https://github.com/ehb54/ultrascan3/commit/923260944deb1b79e310ceb98a16effa5b5090ca Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M gui/us_abstractrotor_gui.h M gui/us_analyte_gui.h M gui/us_buffer_gui.h M gui/us_data_loader.h M gui/us_experiment_gui.h M gui/us_get_run.h M gui/us_load_auc.h M gui/us_model_loader.h M gui/us_select_triples.h M gui/us_solution_gui.h M programs/us_2dsa/us_adv_analysis_2d.h M programs/us_2dsa/us_analysis_control_2d.h M programs/us_2dsa/us_plot_control_2d.h M programs/us_esigner_gmp/us_esigner_gmp.h M programs/us_fematch/us_advanced_fem.h M programs/us_fematch/us_fematch.h M programs/us_fematch/us_plot_control_fem.h M programs/us_mwl_species_fit/us_mwl_species_fit.h M programs/us_mwl_species_sim/us_mwl_species_sim.h M programs/us_mwl_spectra/us_mwl_spectra.h M programs/us_mwl_spectra/us_mwls_pltctl.h M programs/us_mwlr_viewer/us_mwlr_viewer.h M programs/us_pcsa/us_adv_analysis_pc.h M programs/us_pcsa/us_analysis_control_pc.h M programs/us_pcsa/us_pcsa.h M programs/us_pcsa/us_plot_control_pc.h M programs/us_pcsa/us_rpscan.h M programs/us_pseudo3d_combine/us_pseudo3d_combine.h M programs/us_pseudo3d_combine/us_remove_distros.h M programs/us_ramp/us_select_triples_ra.h M programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_vhw_combine/us_vhwc_pltctl.h Log Message: ----------- Update help file paths for improved documentation consistency and organization. Compare: https://github.com/ehb54/ultrascan3/compare/e2fbf48c659f...923260944deb To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Mon Apr 6 16:29:55 2026 From: noreply at github.com (Lukas Dobler) Date: Mon, 06 Apr 2026 15:29:55 -0700 Subject: [us-commits] [ehb54/ultrascan3] 78e6d9: Let github action only build the documnetaion with... Message-ID: Branch: refs/heads/lukas/manual_test/make Home: https://github.com/ehb54/ultrascan3 Commit: 78e6d90c9756f558dd3c67e03ec447dbaa996a8a https://github.com/ehb54/ultrascan3/commit/78e6d90c9756f558dd3c67e03ec447dbaa996a8a Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .github/workflows/doc-build.yml Log Message: ----------- Let github action only build the documnetaion with the qthelp builder, because latex dependencies are currently missing Commit: 05eb1370b6158124bcafd398fef77466e66be0aa https://github.com/ehb54/ultrascan3/commit/05eb1370b6158124bcafd398fef77466e66be0aa Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h Log Message: ----------- Remove feature commit in wrong branch Compare: https://github.com/ehb54/ultrascan3/compare/923260944deb...05eb1370b615 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Mon Apr 6 16:40:18 2026 From: noreply at github.com (Lukas Dobler) Date: Mon, 06 Apr 2026 15:40:18 -0700 Subject: [us-commits] [ehb54/ultrascan3] 78d927: Ensure zoom stack initialization on zoom button press Message-ID: Branch: refs/heads/main Home: https://github.com/ehb54/ultrascan3 Commit: 78d927e26195be17b4a8ff09959676a6247bcb34 https://github.com/ehb54/ultrascan3/commit/78d927e26195be17b4a8ff09959676a6247bcb34 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-06 (Mon, 06 Apr 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h Log Message: ----------- Ensure zoom stack initialization on zoom button press Commit: dcc8ccbdac5394275563aeee0c8c523a6df45589 https://github.com/ehb54/ultrascan3/commit/dcc8ccbdac5394275563aeee0c8c523a6df45589 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-06 (Mon, 06 Apr 2026) Changed paths: M gui/us_plot.cpp Log Message: ----------- Refactor zoom logic to handle null plots and absolute values Commit: 18c02644a764f585fd585e1af1c21e4d5790b60c https://github.com/ehb54/ultrascan3/commit/18c02644a764f585fd585e1af1c21e4d5790b60c Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h Log Message: ----------- Merge pull request #406 from ehb54/lukas/us_plot_zoom_qwt616 Ensure zoom stack initialization on zoom button press Compare: https://github.com/ehb54/ultrascan3/compare/cc049b493eb8...18c02644a764 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Mon Apr 6 16:40:19 2026 From: noreply at github.com (Lukas Dobler) Date: Mon, 06 Apr 2026 15:40:19 -0700 Subject: [us-commits] [ehb54/ultrascan3] Message-ID: Branch: refs/heads/lukas/us_plot_zoom_qwt616 Home: https://github.com/ehb54/ultrascan3 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Mon Apr 6 16:40:55 2026 From: noreply at github.com (Lukas Dobler) Date: Mon, 06 Apr 2026 15:40:55 -0700 Subject: [us-commits] [ehb54/ultrascan3] 78d927: Ensure zoom stack initialization on zoom button press Message-ID: Branch: refs/heads/lukas/manual_test/make Home: https://github.com/ehb54/ultrascan3 Commit: 78d927e26195be17b4a8ff09959676a6247bcb34 https://github.com/ehb54/ultrascan3/commit/78d927e26195be17b4a8ff09959676a6247bcb34 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-06 (Mon, 06 Apr 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h Log Message: ----------- Ensure zoom stack initialization on zoom button press Commit: dcc8ccbdac5394275563aeee0c8c523a6df45589 https://github.com/ehb54/ultrascan3/commit/dcc8ccbdac5394275563aeee0c8c523a6df45589 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-06 (Mon, 06 Apr 2026) Changed paths: M gui/us_plot.cpp Log Message: ----------- Refactor zoom logic to handle null plots and absolute values Commit: 18c02644a764f585fd585e1af1c21e4d5790b60c https://github.com/ehb54/ultrascan3/commit/18c02644a764f585fd585e1af1c21e4d5790b60c Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h Log Message: ----------- Merge pull request #406 from ehb54/lukas/us_plot_zoom_qwt616 Ensure zoom stack initialization on zoom button press Commit: 3c1312a39ac562248315fb410c301c9d8eab79f5 https://github.com/ehb54/ultrascan3/commit/3c1312a39ac562248315fb410c301c9d8eab79f5 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h Log Message: ----------- Merge branch 'main' into lukas/manual_test/make Compare: https://github.com/ehb54/ultrascan3/compare/05eb1370b615...3c1312a39ac5 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Mon Apr 6 17:19:30 2026 From: noreply at github.com (alexsav815) Date: Mon, 06 Apr 2026 16:19:30 -0700 Subject: [us-commits] [ehb54/ultrascan3] Message-ID: Branch: refs/heads/alexey-dev-issue805 Home: https://github.com/ehb54/ultrascan3 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Mon Apr 6 19:07:29 2026 From: noreply at github.com (alexsav815) Date: Mon, 06 Apr 2026 18:07:29 -0700 Subject: [us-commits] [ehb54/ultrascan3] 769733: GMP -- address (most of the GUI) issues reported b... Message-ID: Branch: refs/heads/alexey-dev-issue805 Home: https://github.com/ehb54/ultrascan3 Commit: 7697330b00e5852c70f2e4efbded617d5d388245 https://github.com/ehb54/ultrascan3/commit/7697330b00e5852c70f2e4efbded617d5d388245 Author: alexsav815 Date: 2026-04-06 (Mon, 06 Apr 2026) Changed paths: M gui/us_select_item.cpp M programs/us_abde/us_norm_profile.cpp M programs/us_analysis_profile/us_anapro_utils.cpp M programs/us_com_project/us_com_project_gui.cpp M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp Log Message: ----------- GMP -- address (most of the GUI) issues reported by valgrind... To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Tue Apr 7 04:53:16 2026 From: noreply at github.com (Lukas Dobler) Date: Tue, 07 Apr 2026 03:53:16 -0700 Subject: [us-commits] [ehb54/ultrascan3] 99fc3a: Add GitHub Actions workflow for Sphinx documentati... Message-ID: Branch: refs/heads/lukas/manual_test/make Home: https://github.com/ehb54/ultrascan3 Commit: 99fc3a66c861b6275cedd397bfd03e34e85d9435 https://github.com/ehb54/ultrascan3/commit/99fc3a66c861b6275cedd397bfd03e34e85d9435 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: A .github/workflows/sphinx-doc-build.yml Log Message: ----------- Add GitHub Actions workflow for Sphinx documentation build To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Tue Apr 7 07:02:28 2026 From: noreply at github.com (Lukas Dobler) Date: Tue, 07 Apr 2026 06:02:28 -0700 Subject: [us-commits] [ehb54/ultrascan3] 5fa677: Refactor Sphinx GitHub Actions workflow: replace d... Message-ID: Branch: refs/heads/lukas/manual_test/make Home: https://github.com/ehb54/ultrascan3 Commit: 5fa677c2afd3175fa29a37165561f4125a867c5d https://github.com/ehb54/ultrascan3/commit/5fa677c2afd3175fa29a37165561f4125a867c5d Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .github/workflows/sphinx-doc-build.yml Log Message: ----------- Refactor Sphinx GitHub Actions workflow: replace deprecated problem matcher usage, streamline build commands, and add error handling. To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Tue Apr 7 07:02:41 2026 From: noreply at github.com (Lukas Dobler) Date: Tue, 07 Apr 2026 06:02:41 -0700 Subject: [us-commits] [ehb54/ultrascan3] b91a5a: Add Sphinx problem matcher configuration for GitHu... Message-ID: Branch: refs/heads/lukas/manual_test/make Home: https://github.com/ehb54/ultrascan3 Commit: b91a5ae2fecdc63970efdf031426e000eff8cc6e https://github.com/ehb54/ultrascan3/commit/b91a5ae2fecdc63970efdf031426e000eff8cc6e Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: A .github/sphinx-matcher.json Log Message: ----------- Add Sphinx problem matcher configuration for GitHub Actions To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Tue Apr 7 07:44:38 2026 From: noreply at github.com (Lukas Dobler) Date: Tue, 07 Apr 2026 06:44:38 -0700 Subject: [us-commits] [ehb54/ultrascan3] 45da34: Annotate Sphinx build warnings in GitHub Actions w... Message-ID: Branch: refs/heads/lukas/manual_test/make Home: https://github.com/ehb54/ultrascan3 Commit: 45da34200ce91a23a4f1f8d168e7a1ee612b03b5 https://github.com/ehb54/ultrascan3/commit/45da34200ce91a23a4f1f8d168e7a1ee612b03b5 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .github/workflows/sphinx-doc-build.yml Log Message: ----------- Annotate Sphinx build warnings in GitHub Actions workflow and update qthelp build step for improved error handling. To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Tue Apr 7 07:52:05 2026 From: noreply at github.com (Lukas Dobler) Date: Tue, 07 Apr 2026 06:52:05 -0700 Subject: [us-commits] [ehb54/ultrascan3] f37503: Replace custom Sphinx warning annotation script wi... Message-ID: Branch: refs/heads/lukas/manual_test/make Home: https://github.com/ehb54/ultrascan3 Commit: f3750319ef93a4a4b5f925ffaa38acd1ebb8f6f5 https://github.com/ehb54/ultrascan3/commit/f3750319ef93a4a4b5f925ffaa38acd1ebb8f6f5 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .github/workflows/sphinx-doc-build.yml Log Message: ----------- Replace custom Sphinx warning annotation script with `sphinx-doc/github-problem-matcher` for streamlined GitHub Actions workflow. To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Tue Apr 7 08:29:39 2026 From: noreply at github.com (Lukas Dobler) Date: Tue, 07 Apr 2026 07:29:39 -0700 Subject: [us-commits] [ehb54/ultrascan3] bc2b74: Remove obsolete Sphinx problem matcher configurati... Message-ID: Branch: refs/heads/lukas/manual_test/make Home: https://github.com/ehb54/ultrascan3 Commit: bc2b74fbb9b5698c8269f2d6b060ce420ab6697a https://github.com/ehb54/ultrascan3/commit/bc2b74fbb9b5698c8269f2d6b060ce420ab6697a Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: R .github/sphinx-matcher.json Log Message: ----------- Remove obsolete Sphinx problem matcher configuration from GitHub Actions. To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Tue Apr 7 14:36:18 2026 From: noreply at github.com (Lukas Dobler) Date: Tue, 07 Apr 2026 13:36:18 -0700 Subject: [us-commits] [ehb54/ultrascan3] 715a3f: Fix triplicates to triples Message-ID: Branch: refs/heads/lukas/manual_test/make Home: https://github.com/ehb54/ultrascan3 Commit: 715a3fd86ec9bdb692b3e1fa0ce393a86548c213 https://github.com/ehb54/ultrascan3/commit/715a3fd86ec9bdb692b3e1fa0ce393a86548c213 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/convert.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/export_legacy.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/second_moment.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst Log Message: ----------- Fix triplicates to triples To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Tue Apr 7 15:05:08 2026 From: noreply at github.com (Lukas Dobler) Date: Tue, 07 Apr 2026 14:05:08 -0700 Subject: [us-commits] [ehb54/ultrascan3] 254289: ACAB doubled Message-ID: Branch: refs/heads/lukas/us_fematch Home: https://github.com/ehb54/ultrascan3 Commit: 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programs/us_com_project/us_com_project_gui.h M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp M qwtplot3d/include/qwt3d_openglhelper.h A scripts/build.bat A scripts/build.ps1 M scripts/build.sh R vcpkg M vcpkg.json Log Message: ----------- Merge remote-tracking branch 'upstream/main' into ticket_748 Commit: 572bb723ed591be3225aacbdbc387c93c17ca792 https://github.com/ehb54/ultrascan3/commit/572bb723ed591be3225aacbdbc387c93c17ca792 Author: emre brookes Date: 2026-02-26 (Thu, 26 Feb 2026) Changed paths: M gui/us_spectrodata.h M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_ddist_combine/us_ddist_combine.h M programs/us_ga_init/us_ga_init.cpp M programs/us_ga_init/us_ga_init.h M programs/us_ga_init/us_solutedata.cpp M programs/us_integral/us_integral.cpp M programs/us_integral/us_integral.h M programs/us_modelmetrics/us_modelmetrics.cpp M 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M programs/us_ga_init/us_ga_init.h M programs/us_ga_init/us_solutedata.cpp M programs/us_integral/us_integral.cpp M programs/us_integral/us_integral.h M programs/us_modelmetrics/us_modelmetrics.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.h M qwtplot3d/include/qwt3d_openglhelper.h A scripts/build.bat A scripts/build.ps1 M scripts/build.sh M vcpkg.json Log Message: ----------- Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2 # Conflicts: # .gitignore # scripts/build.sh Commit: ef3356b450a93ec526f92ee27da0a9bfcfa9c04a https://github.com/ehb54/ultrascan3/commit/ef3356b450a93ec526f92ee27da0a9bfcfa9c04a Author: aaron-auc Date: 2026-03-01 (Sun, 01 Mar 2026) Changed paths: M LICENSE.txt Log Message: ----------- fix: text was original utf-8 so quotes became questions marks with ascii tool. 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Commit: 82c2dc2269b90376cf1f69ca3f88b4bee38c641e https://github.com/ehb54/ultrascan3/commit/82c2dc2269b90376cf1f69ca3f88b4bee38c641e Author: aaron-auc Date: 2026-03-02 (Mon, 02 Mar 2026) Changed paths: R admin/cmake/MacDeploy.cmake A admin/cmake/packaging/macos/MacDeploy.cmake A admin/cmake/packaging/macos/MacOsPkg.cmake A pkg/macos/component.plist A pkg/macos/distribution.xml.in A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3 A pkg/macos/postinstall A pkg/macos/preinstall A pkg/macos/resources/Welcome.txt.in A pkg/macos/resources/background.png A pkg/macos/ultrascan_sysctl.plist A pkg/macos/uninstall.sh M scripts/build.sh Log Message: ----------- add: launcher and packaging step Commit: 88ef4e481d1b4ea751d997b156e3782f1befce93 https://github.com/ehb54/ultrascan3/commit/88ef4e481d1b4ea751d997b156e3782f1befce93 Author: aaron-auc Date: 2026-03-02 (Mon, 02 Mar 2026) Changed paths: M CMakeLists.txt M CMakePresets.json M admin/cmake/packaging/macos/MacDeploy.cmake M admin/cmake/toolchain.cmake M doc/manual/CMakeLists.txt M doc/manual/StageAssistant.cmake Log Message: ----------- add: working qt6 build and install Commit: 5ee4575063fb99b0b70eb335bc0d88e3a903b857 https://github.com/ehb54/ultrascan3/commit/5ee4575063fb99b0b70eb335bc0d88e3a903b857 Author: Saeed Date: 2026-03-03 (Tue, 03 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- us_spectrum: update GUI and DataProfile Commit: d864a615e96c4dd2c66a738120c35c6eb556d647 https://github.com/ehb54/ultrascan3/commit/d864a615e96c4dd2c66a738120c35c6eb556d647 Author: Saeed Date: 2026-03-03 (Tue, 03 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- us_spectrum: use minmax Commit: 644141ae003ec988b86eb7b01c1e21cf208b0dac https://github.com/ehb54/ultrascan3/commit/644141ae003ec988b86eb7b01c1e21cf208b0dac Author: Saeed Date: 2026-03-04 (Wed, 04 Mar 2026) Changed paths: M gui/us_spectrodata.h M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_ddist_combine/us_ddist_combine.h M programs/us_ga_init/us_ga_init.cpp M programs/us_ga_init/us_ga_init.h M programs/us_ga_init/us_solutedata.cpp M programs/us_integral/us_integral.cpp M programs/us_integral/us_integral.h M programs/us_modelmetrics/us_modelmetrics.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.h Log Message: ----------- Merge remote-tracking branch 'upstream/main' into ticket_748 Commit: 04583d8a1b0bcf01875f31b93a12343610284126 https://github.com/ehb54/ultrascan3/commit/04583d8a1b0bcf01875f31b93a12343610284126 Author: aaron-auc Date: 2026-03-04 (Wed, 04 Mar 2026) Changed paths: M CMakeLists.txt A admin/cmake/packaging/windows/WinDeploy.cmake A admin/cmake/packaging/windows/WinPkg.cmake Log Message: ----------- add: windows installer Commit: 20b958cec1d253988daedd88a2fec65efd28448d https://github.com/ehb54/ultrascan3/commit/20b958cec1d253988daedd88a2fec65efd28448d Author: aaron-auc Date: 2026-03-04 (Wed, 04 Mar 2026) Changed paths: M scripts/build.ps1 Log Message: ----------- add: pkg command to build.ps1 Commit: 2698e05dd320a374785cab43ed05a52db3c5c3a7 https://github.com/ehb54/ultrascan3/commit/2698e05dd320a374785cab43ed05a52db3c5c3a7 Author: aaron-auc Date: 2026-03-04 (Wed, 04 Mar 2026) Changed paths: M admin/cmake/packaging/windows/WinPkg.cmake M scripts/build.ps1 Log Message: ----------- fix: missing programs in installer package Commit: 499648d1ea27751d008981e0d9f1447cfbef7072 https://github.com/ehb54/ultrascan3/commit/499648d1ea27751d008981e0d9f1447cfbef7072 Author: aaron-auc Date: 2026-03-04 (Wed, 04 Mar 2026) Changed paths: M CMakeLists.txt M scripts/build.ps1 Log Message: ----------- fix: missing sphinx on windows build Commit: 2fcc6637f35ea3ab3c8e1450a06b60932d033f1b https://github.com/ehb54/ultrascan3/commit/2fcc6637f35ea3ab3c8e1450a06b60932d033f1b Author: Saeed Date: 2026-03-05 (Thu, 05 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- us_spectrum: update Commit: b2c2afd33a8ed941e547021628bcb32abea1675a https://github.com/ehb54/ultrascan3/commit/b2c2afd33a8ed941e547021628bcb32abea1675a Author: emre brookes Date: 2026-03-05 (Thu, 05 Mar 2026) Changed paths: R README.linguist M etc/etc_belongs_list.txt R etc/us3-GMP-icon-128x128.ico M etc/us3-GMP-icon-128x128.png R etc/us3-GMP-icon-128x128.xpm R etc/us3-GMP-icon-32x32.ico R etc/us3-GMP-icon-32x32.png R etc/us3-GMP-icon-32x32.xpm R etc/us3-GMP-icon-48x48.ico R etc/us3-GMP-icon-48x48.png R etc/us3-GMP-icon-48x48.xpm M gui/libus_gui.pro M programs/us/us.pro R programs/us/us_de_DE.ts M programs/us_config/us_config.pro R propignore R proppng R proptext R qwtplot3d/lingua_de.ts M test/utils/test_us_crypto.cpp M utils/libus_utils.pro M utils/us_crypto.cpp M utils/us_crypto.h Log Message: ----------- Merge branch 'main' into ehb54-issue-670 Commit: 41a6910c567f5d60a14f6a802af0a1134eef03c4 https://github.com/ehb54/ultrascan3/commit/41a6910c567f5d60a14f6a802af0a1134eef03c4 Author: Saeed Date: 2026-03-05 (Thu, 05 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- add argsort and sort functions Commit: 6a9245189a1804e4557df78035f6f4401a5883ea https://github.com/ehb54/ultrascan3/commit/6a9245189a1804e4557df78035f6f4401a5883ea Author: aaron-auc Date: 2026-03-05 (Thu, 05 Mar 2026) Changed paths: M doc/manual/Makefile M doc/manual/source/2dsa/2dsa_adv.rst M doc/manual/source/2dsa/2dsa_analys.rst M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/2dsa/index.rst M doc/manual/source/3d_plot.rst R doc/manual/source/_static/custom.css R doc/manual/source/_static/images/2dsa_3dplot.png R 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Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- us_spectrum: large updates Commit: 15ea3878148a0987efd94cdedb07b9e3db570cfd https://github.com/ehb54/ultrascan3/commit/15ea3878148a0987efd94cdedb07b9e3db570cfd Author: Saeed Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- finish the fit function Commit: 1c6be507a58b5e30438f1565b772e544ee297d86 https://github.com/ehb54/ultrascan3/commit/1c6be507a58b5e30438f1565b772e544ee297d86 Author: Saeed Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- improve find_lambda function Commit: 3b29d9afdd3d29c7e33af7f0b989ccf1c642bc8c https://github.com/ehb54/ultrascan3/commit/3b29d9afdd3d29c7e33af7f0b989ccf1c642bc8c Author: aaron-auc Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: A scripts/bootstrap-deps.sh A scripts/bootstrap-macos.sh A scripts/bootstrap-windows.ps1 A scripts/bootstrap.bat M scripts/build.ps1 M scripts/build.sh Log Message: ----------- fix: bootstrap deps Commit: 4975707ad3f001539ceeea7d716043118c23d07a https://github.com/ehb54/ultrascan3/commit/4975707ad3f001539ceeea7d716043118c23d07a Author: aaron-auc Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: A buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake A buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json M scripts/bootstrap-deps.sh Log Message: ----------- fix: qt5 tools overlay Commit: e7e0613e5d7d234f835e4e9490416e0a7f5b9803 https://github.com/ehb54/ultrascan3/commit/e7e0613e5d7d234f835e4e9490416e0a7f5b9803 Author: aaron-auc Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: M scripts/bootstrap-deps.sh M scripts/bootstrap-macos.sh M scripts/build.sh A us-build Log Message: ----------- add: bash wrapper Commit: b93b52b3acb64a650854a16f3983473f49becee9 https://github.com/ehb54/ultrascan3/commit/b93b52b3acb64a650854a16f3983473f49becee9 Author: aaron-auc Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: M scripts/build.ps1 Log Message: ----------- mod: make profile positional for powershell Commit: dfec7b06f5af8e9ad31d7b4c682197a103bd5fb1 https://github.com/ehb54/ultrascan3/commit/dfec7b06f5af8e9ad31d7b4c682197a103bd5fb1 Author: aaron-auc Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: M scripts/bootstrap-windows.ps1 M scripts/build.bat Log Message: ----------- fix: convert -- pkg to - pkg for windows Commit: 2f98f90faa5b640815d571359919c09034a266c1 https://github.com/ehb54/ultrascan3/commit/2f98f90faa5b640815d571359919c09034a266c1 Author: aaron-auc Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: M scripts/bootstrap-windows.ps1 Log Message: ----------- fix: getwin Commit: 7249d6b2d508075f65d61b2643639c789db68d8e https://github.com/ehb54/ultrascan3/commit/7249d6b2d508075f65d61b2643639c789db68d8e Author: aaron-auc Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: M scripts/bootstrap-windows.ps1 Log Message: ----------- fix: add chocolatey fallback for ci Commit: fd116b43987cda26a351438dcd70082a7c27ce17 https://github.com/ehb54/ultrascan3/commit/fd116b43987cda26a351438dcd70082a7c27ce17 Author: emre brookes Date: 2026-03-10 (Tue, 10 Mar 2026) Changed paths: M gui/us_convert_gui.cpp M gui/us_convert_gui.h M programs/us_mwl_species_sim/us_mwl_species_sim.cpp M programs/us_pseudo_absorbance/us_convert_scan.cpp M programs/us_pseudo_absorbance/us_convert_scan.h M test/utils/test_us_time_state.cpp M utils/us_astfem_math.cpp M utils/us_astfem_math.h M utils/us_cfa_data.cpp M utils/us_time_state.cpp M utils/us_time_state.h M utils/us_xpn_data.cpp Log Message: ----------- Merge branch 'main' into ehb54-issue-670 Commit: 12ffcd24c66797e3e2d49303bce6232cc9c13d7c https://github.com/ehb54/ultrascan3/commit/12ffcd24c66797e3e2d49303bce6232cc9c13d7c Author: Saeed Date: 2026-03-10 (Tue, 10 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- us_spectrum: finilized the widget Commit: 21473e24e6f59d7d4edaba9f4ea29e1174a8f579 https://github.com/ehb54/ultrascan3/commit/21473e24e6f59d7d4edaba9f4ea29e1174a8f579 Author: Saeed Date: 2026-03-10 (Tue, 10 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp Log Message: ----------- reformat some lines Commit: 55d03f81788bc585236ce0b642d89abc3293ad3a https://github.com/ehb54/ultrascan3/commit/55d03f81788bc585236ce0b642d89abc3293ad3a Author: Saeed Date: 2026-03-10 (Tue, 10 Mar 2026) Changed paths: R README.linguist M etc/etc_belongs_list.txt R etc/us3-GMP-icon-128x128.ico M etc/us3-GMP-icon-128x128.png R etc/us3-GMP-icon-128x128.xpm R etc/us3-GMP-icon-32x32.ico R etc/us3-GMP-icon-32x32.png R etc/us3-GMP-icon-32x32.xpm R etc/us3-GMP-icon-48x48.ico R etc/us3-GMP-icon-48x48.png R etc/us3-GMP-icon-48x48.xpm M gui/libus_gui.pro M gui/us_convert_gui.cpp M gui/us_convert_gui.h M programs/us/us.pro R programs/us/us_de_DE.ts M programs/us_config/us_config.pro M programs/us_mwl_species_sim/us_mwl_species_sim.cpp M programs/us_pseudo_absorbance/us_convert_scan.cpp M programs/us_pseudo_absorbance/us_convert_scan.h R propignore R proppng R proptext R qwtplot3d/lingua_de.ts M test/utils/test_us_crypto.cpp M test/utils/test_us_time_state.cpp M utils/libus_utils.pro M utils/us_astfem_math.cpp M utils/us_astfem_math.h M utils/us_cfa_data.cpp M utils/us_crypto.cpp M utils/us_crypto.h M utils/us_time_state.cpp M utils/us_time_state.h M utils/us_xpn_data.cpp Log Message: ----------- Merge remote-tracking branch 'upstream/main' into ticket_748 Commit: c3dd2ab6d66893c243fe40ba02010696a7b78d52 https://github.com/ehb54/ultrascan3/commit/c3dd2ab6d66893c243fe40ba02010696a7b78d52 Author: Saeed Date: 2026-03-10 (Tue, 10 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.h Log Message: ----------- reformat comments Commit: 74f3ba1cd3b6646dce0b4638c98b2707dff60f2e https://github.com/ehb54/ultrascan3/commit/74f3ba1cd3b6646dce0b4638c98b2707dff60f2e Author: Saeed Date: 2026-03-10 (Tue, 10 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.h Log Message: ----------- us_spectrum.h: removed us_math2.h Commit: 45140eeddd64e45d6b5c87061f79c9aefc3ce25e https://github.com/ehb54/ultrascan3/commit/45140eeddd64e45d6b5c87061f79c9aefc3ce25e Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json M programs/us/revision.sh M scripts/build.ps1 Log Message: ----------- fix: windows CI vcpkg cache usage Commit: 1ec6ec52d283b6c710abe095ebcad82139a64ae3 https://github.com/ehb54/ultrascan3/commit/1ec6ec52d283b6c710abe095ebcad82139a64ae3 Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M CMakePresets.json M scripts/build.sh Log Message: ----------- add: macos intel build Commit: 39ad33c5c781b0f007822456803df7d591795fe7 https://github.com/ehb54/ultrascan3/commit/39ad33c5c781b0f007822456803df7d591795fe7 Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M scripts/build.ps1 Log Message: ----------- fix: vcpkg CI handling Commit: 7fad3a4dfaa187ad4eb94554cedbe3ec6cf56773 https://github.com/ehb54/ultrascan3/commit/7fad3a4dfaa187ad4eb94554cedbe3ec6cf56773 Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M programs/us_mpi_analysis/revision.sh Log Message: ----------- fix: change revision to git_revision to be consistent with other programs Commit: b4417a6bfd0cfcc840668d21e88718e957734e47 https://github.com/ehb54/ultrascan3/commit/b4417a6bfd0cfcc840668d21e88718e957734e47 Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: R README.linguist M etc/etc_belongs_list.txt R etc/us3-GMP-icon-128x128.ico M etc/us3-GMP-icon-128x128.png R etc/us3-GMP-icon-128x128.xpm R etc/us3-GMP-icon-32x32.ico R etc/us3-GMP-icon-32x32.png R etc/us3-GMP-icon-32x32.xpm R etc/us3-GMP-icon-48x48.ico R etc/us3-GMP-icon-48x48.png R etc/us3-GMP-icon-48x48.xpm M gui/libus_gui.pro M gui/us_convert_gui.cpp M gui/us_convert_gui.h M programs/us/us.pro R programs/us/us_de_DE.ts M programs/us_config/us_config.pro M programs/us_mwl_species_sim/us_mwl_species_sim.cpp M programs/us_pseudo_absorbance/us_convert_scan.cpp M programs/us_pseudo_absorbance/us_convert_scan.h R propignore R proppng R proptext R qwtplot3d/lingua_de.ts M test/utils/test_us_crypto.cpp M test/utils/test_us_time_state.cpp M utils/libus_utils.pro M utils/us_astfem_math.cpp M utils/us_astfem_math.h M utils/us_cfa_data.cpp M utils/us_crypto.cpp M utils/us_crypto.h M utils/us_time_state.cpp M utils/us_time_state.h M utils/us_xpn_data.cpp Log Message: ----------- Merge branch 'main' into 527-enhancement-sphinx-migration-2 Commit: f0c8ede548bfb3a6f2380059dd1aacf09c6a7883 https://github.com/ehb54/ultrascan3/commit/f0c8ede548bfb3a6f2380059dd1aacf09c6a7883 Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M scripts/bootstrap-macos.sh Log Message: ----------- fix: add missing dependencies Commit: 09eeb4bec49931c943f732f024f1166b882c3e3a https://github.com/ehb54/ultrascan3/commit/09eeb4bec49931c943f732f024f1166b882c3e3a Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: R README.linguist M etc/etc_belongs_list.txt R etc/us3-GMP-icon-128x128.ico M etc/us3-GMP-icon-128x128.png R etc/us3-GMP-icon-128x128.xpm R etc/us3-GMP-icon-32x32.ico R etc/us3-GMP-icon-32x32.png R etc/us3-GMP-icon-32x32.xpm R etc/us3-GMP-icon-48x48.ico R etc/us3-GMP-icon-48x48.png R etc/us3-GMP-icon-48x48.xpm M gui/libus_gui.pro M gui/us_convert_gui.cpp M gui/us_convert_gui.h M programs/us/us.pro R programs/us/us_de_DE.ts M programs/us_config/us_config.pro M programs/us_mwl_species_sim/us_mwl_species_sim.cpp M programs/us_pseudo_absorbance/us_convert_scan.cpp M programs/us_pseudo_absorbance/us_convert_scan.h R propignore R proppng R proptext R qwtplot3d/lingua_de.ts M test/utils/test_us_crypto.cpp M test/utils/test_us_time_state.cpp M utils/libus_utils.pro M utils/us_astfem_math.cpp M utils/us_astfem_math.h M utils/us_cfa_data.cpp M utils/us_crypto.cpp M utils/us_crypto.h M utils/us_time_state.cpp M utils/us_time_state.h M utils/us_xpn_data.cpp Log Message: ----------- Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2 Commit: 51ba58286eaaa41af877ff9330d19560633e1c16 https://github.com/ehb54/ultrascan3/commit/51ba58286eaaa41af877ff9330d19560633e1c16 Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M scripts/bootstrap-macos.sh Log Message: ----------- fix: add missing dependencies Commit: 21a5f4a7ad52a67040b9426ed30a082038813498 https://github.com/ehb54/ultrascan3/commit/21a5f4a7ad52a67040b9426ed30a082038813498 Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M scripts/build.sh Log Message: ----------- mod: reduce linux disk space usage Commit: 12b7e30a17e5c86f8e9d4960f7e8da86d67b3b4f https://github.com/ehb54/ultrascan3/commit/12b7e30a17e5c86f8e9d4960f7e8da86d67b3b4f Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M scripts/build.sh Log Message: ----------- mod: removed vcpkg folder creation Commit: ece15a944fb55077213717e00f084056004367a7 https://github.com/ehb54/ultrascan3/commit/ece15a944fb55077213717e00f084056004367a7 Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M admin/cmake/packaging/windows/WinDeploy.cmake Log Message: ----------- mod: change qt warnings an error to force build to stop Commit: 80474c759ff865d72c8c6043ba64d38bf98e1e15 https://github.com/ehb54/ultrascan3/commit/80474c759ff865d72c8c6043ba64d38bf98e1e15 Author: aaron-auc Date: 2026-03-12 (Thu, 12 Mar 2026) Changed paths: M scripts/build.sh Log Message: ----------- mod: reduce to 2 cores for ubuntu Commit: e9f0952dea5d8bb82a866082b546997a3e457ec4 https://github.com/ehb54/ultrascan3/commit/e9f0952dea5d8bb82a866082b546997a3e457ec4 Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-12 (Thu, 12 Mar 2026) Changed paths: M gui/us_extinction_gui.cpp M gui/us_extinction_gui.h M programs/us_legacy_converter/us_legacy_converter.cpp M programs/us_legacy_converter/us_legacy_converter.h M programs/us_query_rmsd/us_query_rmsd.cpp M programs/us_query_rmsd/us_query_rmsd.h M programs/us_ramp/us_ramp_gui.h M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- Merge branch 'main' into ehb54-issue-670 Commit: c4af75ba6a8e299d819034f87528f9d6997e469f https://github.com/ehb54/ultrascan3/commit/c4af75ba6a8e299d819034f87528f9d6997e469f Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-12 (Thu, 12 Mar 2026) Changed paths: M gui/us_extinction_gui.cpp M gui/us_extinction_gui.h M programs/us_legacy_converter/us_legacy_converter.cpp M programs/us_legacy_converter/us_legacy_converter.h M programs/us_query_rmsd/us_query_rmsd.cpp M programs/us_query_rmsd/us_query_rmsd.h M programs/us_ramp/us_ramp_gui.h M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- Merge branch 'main' into 527-enhancement-sphinx-migration-2 Commit: 0f81d3f0d1fb567b1e570ed90147a17f49e57c1f https://github.com/ehb54/ultrascan3/commit/0f81d3f0d1fb567b1e570ed90147a17f49e57c1f Author: aaron-auc Date: 2026-03-12 (Thu, 12 Mar 2026) Changed paths: M CMakeLists.txt M CMakePresets.json M admin/cmake/packaging/windows/WinDeploy.cmake R scripts/bootstrap-deps.sh A scripts/bootstrap-linux.sh M scripts/bootstrap-macos.sh M scripts/build.sh M utils/CMakeLists.txt M vcpkg.json Log Message: ----------- mod: move checks to bootstrap Commit: 4ff50388194860753c3e8bc4d697e944ce0f1641 https://github.com/ehb54/ultrascan3/commit/4ff50388194860753c3e8bc4d697e944ce0f1641 Author: aaron-auc Date: 2026-03-12 (Thu, 12 Mar 2026) Changed paths: M gui/us_extinction_gui.cpp M gui/us_extinction_gui.h M programs/us_legacy_converter/us_legacy_converter.cpp M programs/us_legacy_converter/us_legacy_converter.h M programs/us_query_rmsd/us_query_rmsd.cpp M programs/us_query_rmsd/us_query_rmsd.h M programs/us_ramp/us_ramp_gui.h M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2 Commit: 82349a16124679984a45c562feb3f2583dbdb531 https://github.com/ehb54/ultrascan3/commit/82349a16124679984a45c562feb3f2583dbdb531 Author: aaron-auc Date: 2026-03-13 (Fri, 13 Mar 2026) Changed paths: M scripts/build.sh Log Message: ----------- mod: add platform safe check Commit: 844f0378f9d93d9976788b58bd853ff5baafd865 https://github.com/ehb54/ultrascan3/commit/844f0378f9d93d9976788b58bd853ff5baafd865 Author: alexsav815 Date: 2026-03-13 (Fri, 13 Mar 2026) Changed paths: M programs/us_analysis_profile/us_anapro_utils.cpp M programs/us_reporter_gmp/us_reporter_gmp.cpp Log Message: ----------- GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report... Commit: ef226636cf28fac5f0b62c8cc7535c518336f7cd https://github.com/ehb54/ultrascan3/commit/ef226636cf28fac5f0b62c8cc7535c518336f7cd Author: alexsav815 Date: 2026-03-13 (Fri, 13 Mar 2026) Changed paths: M programs/us_analysis_profile/us_anapro_utils.cpp Log Message: ----------- [1]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report... Commit: 008ab8725529f70ff36e4845202c893ddb0e4213 https://github.com/ehb54/ultrascan3/commit/008ab8725529f70ff36e4845202c893ddb0e4213 Author: alexsav815 Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M programs/us_analysis_profile/us_anapro_utils.cpp Log Message: ----------- [2]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report... Commit: cee06353e7b931a3f580d1bffbeb9f2326d63532 https://github.com/ehb54/ultrascan3/commit/cee06353e7b931a3f580d1bffbeb9f2326d63532 Author: alexsav815 Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M programs/us_analysis_profile/us_anapro_utils.cpp Log Message: ----------- [3]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report... Commit: 5d9bc472d7f67b7cc2de87cfa943d8db9b3bc1c5 https://github.com/ehb54/ultrascan3/commit/5d9bc472d7f67b7cc2de87cfa943d8db9b3bc1c5 Author: alexsav815 Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M programs/us_analysis_profile/us_anapro_utils.cpp Log Message: ----------- [4]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report... Commit: 8a2d982f8e8906a85bfe363487622d59a1ff361e https://github.com/ehb54/ultrascan3/commit/8a2d982f8e8906a85bfe363487622d59a1ff361e Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M gui/us_analyte_gui.cpp M gui/us_plot3d.cpp M programs/CMakeLists.txt M programs/us/CMakeLists.txt M utils/us_timer.h M vcpkg.json Log Message: ----------- Merge branch 'main' into 527-enhancement-sphinx-migration-2 Commit: 6d361b64fc8f314fe8399f028d2c79ef9d0e417b https://github.com/ehb54/ultrascan3/commit/6d361b64fc8f314fe8399f028d2c79ef9d0e417b Author: aaron-auc Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M scripts/build.sh Log Message: ----------- mod: clean after build set Commit: 5b81b9c41fc973670663047afba591d6edaa898c https://github.com/ehb54/ultrascan3/commit/5b81b9c41fc973670663047afba591d6edaa898c Author: aaron-auc Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M admin/cmake/packaging/windows/WinDeploy.cmake Log Message: ----------- fix: packaging Commit: 10e620037c83dddc66d518ab28e33eb36c3e3c17 https://github.com/ehb54/ultrascan3/commit/10e620037c83dddc66d518ab28e33eb36c3e3c17 Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M gui/us_analyte_gui.cpp M gui/us_plot3d.cpp M programs/CMakeLists.txt M programs/us/CMakeLists.txt M utils/us_timer.h M vcpkg.json Log Message: ----------- Merge branch 'main' into ehb54-issue-670 Commit: 3afad49842a3c53daabf741428b683cb8e86837c https://github.com/ehb54/ultrascan3/commit/3afad49842a3c53daabf741428b683cb8e86837c Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-15 (Sun, 15 Mar 2026) Changed paths: M programs/us_config/us_admin.cpp Log Message: ----------- Merge branch 'main' into 527-enhancement-sphinx-migration-2 Commit: afdf12344c5555d4130fa310bf352f2c27bbdadc https://github.com/ehb54/ultrascan3/commit/afdf12344c5555d4130fa310bf352f2c27bbdadc Author: aaron-auc Date: 2026-03-15 (Sun, 15 Mar 2026) Changed paths: A buildsys/vcpkg/overlay-ports/qttools.disable/devendor-litehtml.patch A buildsys/vcpkg/overlay-ports/qttools.disable/portfile.cmake A buildsys/vcpkg/overlay-ports/qttools.disable/vcpkg.json A buildsys/vcpkg/overlay-ports/qttools.disable/windeployqt.debug.bat R buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch R buildsys/vcpkg/overlay-ports/qttools/portfile.cmake R buildsys/vcpkg/overlay-ports/qttools/vcpkg.json R buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat Log Message: ----------- test remove qttools overlay Commit: 691c2112f822e5f82f6f153dbb8d568663367a2c https://github.com/ehb54/ultrascan3/commit/691c2112f822e5f82f6f153dbb8d568663367a2c Author: aaron-auc Date: 2026-03-15 (Sun, 15 Mar 2026) Changed paths: M programs/us_config/us_admin.cpp Log Message: ----------- Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2 Commit: a73d1f0d1b712c4345cbd63219466ef87ccabfdb https://github.com/ehb54/ultrascan3/commit/a73d1f0d1b712c4345cbd63219466ef87ccabfdb Author: alexsav815 Date: 2026-03-16 (Mon, 16 Mar 2026) Changed paths: M programs/us_reporter_gmp/us_reporter_gmp.cpp Log Message: ----------- [5]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report... Commit: 28dafe4f6fe91d2a19d25a13dca2a9700c8524c1 https://github.com/ehb54/ultrascan3/commit/28dafe4f6fe91d2a19d25a13dca2a9700c8524c1 Author: alexsav815 Date: 2026-03-16 (Mon, 16 Mar 2026) Changed paths: M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h Log Message: ----------- [6]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report... Commit: 88e5262aa244a552236f70eb1b00274e245d2f90 https://github.com/ehb54/ultrascan3/commit/88e5262aa244a552236f70eb1b00274e245d2f90 Author: alexsav815 Date: 2026-03-16 (Mon, 16 Mar 2026) Changed paths: M programs/us_reporter_gmp/us_reporter_gmp.cpp Log Message: ----------- [6a]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...ush Commit: 5e19ef3b84e9f0542544c16ad99f1909133b6197 https://github.com/ehb54/ultrascan3/commit/5e19ef3b84e9f0542544c16ad99f1909133b6197 Author: alexsav815 Date: 2026-03-16 (Mon, 16 Mar 2026) Changed paths: M programs/us_reporter_gmp/us_reporter_gmp.cpp Log Message: ----------- [6b]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...ush Commit: cfd2bf22ab1f023d0f1bf0c3677f13218d99b4e3 https://github.com/ehb54/ultrascan3/commit/cfd2bf22ab1f023d0f1bf0c3677f13218d99b4e3 Author: alexsav815 Date: 2026-03-16 (Mon, 16 Mar 2026) Changed paths: M gui/us_analyte_gui.cpp M gui/us_plot3d.cpp M programs/CMakeLists.txt M programs/us/CMakeLists.txt M programs/us_config/us_admin.cpp M utils/us_timer.h M vcpkg.json Log Message: ----------- Merge pull request #393 from ehb54/main Merge main into alexey-dev-issue785 Commit: 5304d85db5ed89082fe2cf86d0fd9f3f3fbd65c3 https://github.com/ehb54/ultrascan3/commit/5304d85db5ed89082fe2cf86d0fd9f3f3fbd65c3 Author: Saeed Date: 2026-03-16 (Mon, 16 Mar 2026) Changed paths: M gui/us_analyte_gui.cpp M gui/us_extinction_gui.cpp M gui/us_extinction_gui.h M gui/us_plot3d.cpp M programs/CMakeLists.txt M programs/us/CMakeLists.txt M programs/us_config/us_admin.cpp M programs/us_legacy_converter/us_legacy_converter.cpp M programs/us_legacy_converter/us_legacy_converter.h M programs/us_query_rmsd/us_query_rmsd.cpp M programs/us_query_rmsd/us_query_rmsd.h M programs/us_ramp/us_ramp_gui.h M utils/us_timer.h M vcpkg.json Log Message: ----------- merge upstream/main , resolved conflicts Commit: 5fbfc3b610b9edaa535c2cdde484daba5a1f6d23 https://github.com/ehb54/ultrascan3/commit/5fbfc3b610b9edaa535c2cdde484daba5a1f6d23 Author: aaron-auc Date: 2026-03-16 (Mon, 16 Mar 2026) Changed paths: M admin/cmake/packaging/windows/WinDeploy.cmake A buildsys/vcpkg/overlay-ports/qt5-tools/fix-pkgconfig-qt5uiplugin-not-found.patch A buildsys/vcpkg/overlay-ports/qt5-tools/fix-spawnvp-argv.patch A buildsys/vcpkg/overlay-ports/qt5-tools/libclang.patch M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake M buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json M scripts/bootstrap-windows.ps1 M scripts/build.ps1 Log Message: ----------- fix: restore patch for qt5-tools Commit: ee9314b8a10555d579148933ce5fb59dc77f25a5 https://github.com/ehb54/ultrascan3/commit/ee9314b8a10555d579148933ce5fb59dc77f25a5 Author: aaron-auc Date: 2026-03-16 (Mon, 16 Mar 2026) Changed paths: M admin/cmake/packaging/windows/WinDeploy.cmake M scripts/bootstrap-windows.ps1 Log Message: ----------- fix: nasm check and add supporting dlls to installation Commit: f9860bd8d1ac6f5c5c4a4b0dd90e3cb7f09bd131 https://github.com/ehb54/ultrascan3/commit/f9860bd8d1ac6f5c5c4a4b0dd90e3cb7f09bd131 Author: aaron-auc Date: 2026-03-16 (Mon, 16 Mar 2026) Changed paths: M scripts/build.ps1 M vcpkg.json Log Message: ----------- mod: check path length is too long on qt 5 Commit: 4365eb02a1c29a38a42fe848da39deab69e67715 https://github.com/ehb54/ultrascan3/commit/4365eb02a1c29a38a42fe848da39deab69e67715 Author: aaron-auc Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: R buildsys/vcpkg/overlay-ports/qttools.disable/devendor-litehtml.patch R buildsys/vcpkg/overlay-ports/qttools.disable/portfile.cmake R buildsys/vcpkg/overlay-ports/qttools.disable/vcpkg.json R buildsys/vcpkg/overlay-ports/qttools.disable/windeployqt.debug.bat Log Message: ----------- del: remove unused overlay Commit: efe1a2ba8b277a19ae50d1262c14239f9f9dac81 https://github.com/ehb54/ultrascan3/commit/efe1a2ba8b277a19ae50d1262c14239f9f9dac81 Author: aaron-auc Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M scripts/bootstrap-linux.sh Log Message: ----------- add: missing linux packages libsm-dev libice-dev Commit: 84f1faaa0819a233d3023bd3ae0d75d2ccaf6430 https://github.com/ehb54/ultrascan3/commit/84f1faaa0819a233d3023bd3ae0d75d2ccaf6430 Author: aaron-auc Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: A buildsys/vcpkg/overlay-ports/mpg123/fix-arm64-no-fpu-neon64.patch A buildsys/vcpkg/overlay-ports/mpg123/have-fpu.diff A buildsys/vcpkg/overlay-ports/mpg123/pkgconfig.diff A buildsys/vcpkg/overlay-ports/mpg123/portfile.cmake A buildsys/vcpkg/overlay-ports/mpg123/vcpkg.json Log Message: ----------- add: port overlay for linux arm fix Commit: aae4ac3a14f0a1c0ce391cedb1844ac845045869 https://github.com/ehb54/ultrascan3/commit/aae4ac3a14f0a1c0ce391cedb1844ac845045869 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M utils/us_crypto.cpp Log Message: ----------- Change encryption finalization to decryption Commit: 9454cb777d85cb65835ea5eb51fc05bc18d58e78 https://github.com/ehb54/ultrascan3/commit/9454cb777d85cb65835ea5eb51fc05bc18d58e78 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M test/utils/test_us_crypto.cpp Log Message: ----------- Implement EncryptDecryptTest for US_Crypto Add unit test for encryption and decryption consistency Commit: 2c028de85502d48e60a380c61b93dc7a7e2f7727 https://github.com/ehb54/ultrascan3/commit/2c028de85502d48e60a380c61b93dc7a7e2f7727 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M test/utils/test_us_crypto.cpp Log Message: ----------- Add unit test for encryption with different passwords Commit: ac1ca1f8183d056ed7e98541ac5ac52d725b33f8 https://github.com/ehb54/ultrascan3/commit/ac1ca1f8183d056ed7e98541ac5ac52d725b33f8 Author: alexsav815 Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp M utils/us_run_protocol.cpp M utils/us_run_protocol.h Log Message: ----------- GMP-ABDE: Ranges & Upload check for ext. profiles -- while situations when extinction profiles for one or more analytes do not cover all wvls in Ranges are caught, the message is misleading and does not provide a hint for inability to proceed; capture exact message at the stage of living 7. Ranges panel & pass to Upload tab before enabling run submission... Commit: 8ba4b05b7f14586d7e527145ba6c464fd3dc3e4d https://github.com/ehb54/ultrascan3/commit/8ba4b05b7f14586d7e527145ba6c464fd3dc3e4d Author: Saeed Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- add wavelength limit picker, add checkbox for db loadings Commit: efd337809634d3a364046f3a040862ce1b2a81f4 https://github.com/ehb54/ultrascan3/commit/efd337809634d3a364046f3a040862ce1b2a81f4 Author: Saeed Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h Log Message: ----------- Merge remote-tracking branch 'upstream/main' into ticket_748 Commit: b94ce34c55dd06ddc8ccfbb1239c262fe1c9cd52 https://github.com/ehb54/ultrascan3/commit/b94ce34c55dd06ddc8ccfbb1239c262fe1c9cd52 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M test/utils/test_us_crypto.cpp M utils/us_crypto.cpp Log Message: ----------- Merge pull request #395 from ehb54/lukas/us_crypto_decrypt_fix Change encryption finalization to decryption Commit: d6c8bb86eb4e77d526599971c15a35328a4927d8 https://github.com/ehb54/ultrascan3/commit/d6c8bb86eb4e77d526599971c15a35328a4927d8 Author: alexsav815 Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M test/utils/test_us_crypto.cpp M utils/us_crypto.cpp Log Message: ----------- Merge branch 'main' into alexey-dev-issue791 Commit: e163509a00c5876ac83d78f14c8a969dae251b75 https://github.com/ehb54/ultrascan3/commit/e163509a00c5876ac83d78f14c8a969dae251b75 Author: alexsav815 Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h M test/utils/test_us_crypto.cpp M utils/us_crypto.cpp Log Message: ----------- Merge branch 'main' into alexey-dev-issue785 Commit: 501adedca88f7d331c3a70d62c04cc4992f86979 https://github.com/ehb54/ultrascan3/commit/501adedca88f7d331c3a70d62c04cc4992f86979 Author: aaron-auc Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M admin/cmake/packaging/macos/MacDeploy.cmake M admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake A admin/cmake/packaging/macos/StageAssistantDev.cmake M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake A buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch A buildsys/vcpkg/overlay-ports/qttools/port.data.cmake A buildsys/vcpkg/overlay-ports/qttools/portfile.cmake A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake M programs/us/CMakeLists.txt M scripts/build.sh Log Message: ----------- add: overlay port for qttools Commit: e1e93704ad79bf8d43c6c4eba74a4c90b1dc1fdf https://github.com/ehb54/ultrascan3/commit/e1e93704ad79bf8d43c6c4eba74a4c90b1dc1fdf Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h M test/utils/test_us_crypto.cpp M utils/us_crypto.cpp Log Message: ----------- Merge branch 'main' into 527-enhancement-sphinx-migration-2 Commit: ce7a1d14ace3b2d645b17aeab7be4f3fb881ff7b https://github.com/ehb54/ultrascan3/commit/ce7a1d14ace3b2d645b17aeab7be4f3fb881ff7b Author: alexsav815 Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M programs/us_analysis_profile/us_anapro_utils.cpp M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h Log Message: ----------- Merge pull request #394 from ehb54/alexey-dev-issue785 Alexey dev issue785: Show sigle-channel-replica group info in the Average over Replicas Section of the Report Commit: e6579802fd032cde1c91863e8af0b2885d936062 https://github.com/ehb54/ultrascan3/commit/e6579802fd032cde1c91863e8af0b2885d936062 Author: alexsav815 Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M programs/us_analysis_profile/us_anapro_utils.cpp M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h Log Message: ----------- Merge branch 'main' into alexey-dev-issue791 Commit: d0eb3d3a8f27a33f4dc6b857f1a2ddcb6c52af5d https://github.com/ehb54/ultrascan3/commit/d0eb3d3a8f27a33f4dc6b857f1a2ddcb6c52af5d Author: Saeed Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_analysis_profile/us_anapro_utils.cpp M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h M test/utils/test_us_crypto.cpp M utils/us_crypto.cpp Log Message: ----------- Merge remote-tracking branch 'upstream/main' into ticket_748 Commit: 563c55a8a0ccb209a43dc363ec87842b0f4d6489 https://github.com/ehb54/ultrascan3/commit/563c55a8a0ccb209a43dc363ec87842b0f4d6489 Author: Saeed Mortezazadeh <49119048+samo38 at users.noreply.github.com> Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- Merge pull request #387 from samo38/ticket_748 Ticket 748: Enhance Spectrum Decomposition GUI and functionality Commit: 3fef021d4fad55bc1bb07521af0bff3e7ac12095 https://github.com/ehb54/ultrascan3/commit/3fef021d4fad55bc1bb07521af0bff3e7ac12095 Author: alexsav815 Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- Merge branch 'main' into alexey-dev-issue791 Commit: cb192562f44149651f3157090d395a05f79da39e https://github.com/ehb54/ultrascan3/commit/cb192562f44149651f3157090d395a05f79da39e Author: alexsav815 Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp M utils/us_run_protocol.cpp M utils/us_run_protocol.h Log Message: ----------- Merge pull request #396 from ehb54/alexey-dev-issue791 GMP-ABDE: Ranges & Upload check for ext. profiles -- while situations? Commit: b1fbfbcbd47cd296b70ccd6ac9178c4efd6b4a4e https://github.com/ehb54/ultrascan3/commit/b1fbfbcbd47cd296b70ccd6ac9178c4efd6b4a4e Author: alexsav815 Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h Log Message: ----------- GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk... Commit: a3b6b6a58f4f1d94a9268cc04a014d3ce1a1471e https://github.com/ehb54/ultrascan3/commit/a3b6b6a58f4f1d94a9268cc04a014d3ce1a1471e Author: alexsav815 Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp Log Message: ----------- [1]GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk... Commit: 992f15191ea67cf8c4dc85736429ab5939967d2f https://github.com/ehb54/ultrascan3/commit/992f15191ea67cf8c4dc85736429ab5939967d2f Author: alexsav815 Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp Log Message: ----------- [2]GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk... Commit: 50c4d0f4452a8f5f8052b4e63ae06abb11f8fe89 https://github.com/ehb54/ultrascan3/commit/50c4d0f4452a8f5f8052b4e63ae06abb11f8fe89 Author: alexsav815 Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp Log Message: ----------- [3]GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk... Commit: 81695e7ad3f97f7cd46fe42d8148a8911fc3fc43 https://github.com/ehb54/ultrascan3/commit/81695e7ad3f97f7cd46fe42d8148a8911fc3fc43 Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M programs/us_analysis_profile/us_anapro_utils.cpp M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h M utils/us_run_protocol.cpp M utils/us_run_protocol.h Log Message: ----------- Merge branch 'main' into 527-enhancement-sphinx-migration-2 Commit: bed8960f5d491db022be512a82491fc248abcbf9 https://github.com/ehb54/ultrascan3/commit/bed8960f5d491db022be512a82491fc248abcbf9 Author: aaron-auc Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M CMakeLists.txt M doc/manual/CMakeLists.txt M doc/manual/README.md M doc/manual/source/conf.py M programs/us/CMakeLists.txt Log Message: ----------- mod: PR comments addressed Commit: 5205cb5542bd366b63909189ac9691c6473fc071 https://github.com/ehb54/ultrascan3/commit/5205cb5542bd366b63909189ac9691c6473fc071 Author: aaron-auc Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h M programs/us_analysis_profile/us_anapro_utils.cpp M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h M test/utils/test_us_crypto.cpp M utils/us_crypto.cpp M utils/us_run_protocol.cpp M utils/us_run_protocol.h Log Message: ----------- Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2 Commit: 76e772666ba74f76a6d525444b9c0cd8f9d01e76 https://github.com/ehb54/ultrascan3/commit/76e772666ba74f76a6d525444b9c0cd8f9d01e76 Author: aaron-auc Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M CMakeLists.txt M doc/manual/CMakeLists.txt Log Message: ----------- fix: skip subdirectory doc/manual if hpc or documentation off Commit: abe431ae514b67270d74e84b599ef069673c1164 https://github.com/ehb54/ultrascan3/commit/abe431ae514b67270d74e84b599ef069673c1164 Author: alexsav815 Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h Log Message: ----------- GMP-ABDE -- 4. EDIT points addressed for ticket #792... Commit: b1c5c0de414d093440081fca1a975a4e1118a9d1 https://github.com/ehb54/ultrascan3/commit/b1c5c0de414d093440081fca1a975a4e1118a9d1 Author: alexsav815 Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- [1]GMP-ABDE -- 4. EDIT points addressed for ticket #792... Commit: c53782335d3f1e5fc4fc2ea6f97ee3d64c79389b https://github.com/ehb54/ultrascan3/commit/c53782335d3f1e5fc4fc2ea6f97ee3d64c79389b Author: alexsav815 Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- [2]GMP-ABDE -- 4. EDIT points addressed for ticket #792... Commit: 672254d0e59b1e555aa0aa2506e7871bb188c5d4 https://github.com/ehb54/ultrascan3/commit/672254d0e59b1e555aa0aa2506e7871bb188c5d4 Author: alexsav815 Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- [3]GMP-ABDE -- 4. EDIT points addressed for ticket #792... Commit: 05b438d52cffda88429e278cae66fead57b193ec https://github.com/ehb54/ultrascan3/commit/05b438d52cffda88429e278cae66fead57b193ec Author: aaron-auc Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M CMakePresets.json M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake R doc/manual/source/conf.py-orig.081225 M gui/CMakeLists.txt M programs/us_helpdaemon/us_helpdaemon.cpp Log Message: ----------- fix: Reformat CMakePresets.json to multi-line style; add US3_NO_DB=ON to all HPC presets; fix GLU elseif(UNIX) branch; drop dead Windows assistant path check. Commit: 21882cd1fd05a489de72b721e1e4bebaa8fb9ac5 https://github.com/ehb54/ultrascan3/commit/21882cd1fd05a489de72b721e1e4bebaa8fb9ac5 Author: aaron-auc Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M CMakeLists.txt M doc/manual/CMakeLists.txt M programs/us/CMakeLists.txt Log Message: ----------- fix: pr comments Commit: 39a94736afc6e6b1450549833138c494fc1ff36b https://github.com/ehb54/ultrascan3/commit/39a94736afc6e6b1450549833138c494fc1ff36b Author: aaron-auc Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M doc/manual/Makefile Log Message: ----------- fix: make all moved to top Commit: 5470c9ac380ea0b9e9e522bcb85e831bf0e466fd https://github.com/ehb54/ultrascan3/commit/5470c9ac380ea0b9e9e522bcb85e831bf0e466fd Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M gui/us_solution_gui.cpp M gui/us_solution_gui.h Log Message: ----------- Enforce analyte for solution in us_solution_gui Commit: cb5e49b544fddf3329fd8662619f4a524628a69e https://github.com/ehb54/ultrascan3/commit/cb5e49b544fddf3329fd8662619f4a524628a69e Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M gui/us_solution_gui.cpp M gui/us_solution_gui.h Log Message: ----------- Update comments, fix function signature Commit: 01301f4fb775a852d7048cf88a308ff8dd796f5a https://github.com/ehb54/ultrascan3/commit/01301f4fb775a852d7048cf88a308ff8dd796f5a Author: alexsav815 Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M programs/us_abde/us_norm_profile.cpp Log Message: ----------- GMP-ABDE -- 5. Analysis addressed for ticket #792... Commit: 3ba588420b506827b73516e8dfa8cd4ae9b2ff28 https://github.com/ehb54/ultrascan3/commit/3ba588420b506827b73516e8dfa8cd4ae9b2ff28 Author: alexsav815 Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M programs/us_abde/us_norm_profile.cpp Log Message: ----------- [2]GMP-ABDE -- 5. Analysis addressed for ticket #792... Commit: 55ad77b5ea4726efff74c2e3da2b763af7b12070 https://github.com/ehb54/ultrascan3/commit/55ad77b5ea4726efff74c2e3da2b763af7b12070 Author: aaron-auc Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M CMakeLists.txt M CMakePresets.json M doc/manual/CMakeLists.txt Log Message: ----------- fix: presets Commit: ad1ceab5b0c51349e506ad4feebf2d0e9442b18f https://github.com/ehb54/ultrascan3/commit/ad1ceab5b0c51349e506ad4feebf2d0e9442b18f Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-21 (Sat, 21 Mar 2026) Changed paths: M gui/us_solution_gui.cpp Log Message: ----------- Show warning before accepting a solution without analyte or common vbar Commit: 7bfe32ca6b7830a5b30fc3e995feb35daccc7460 https://github.com/ehb54/ultrascan3/commit/7bfe32ca6b7830a5b30fc3e995feb35daccc7460 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-21 (Sat, 21 Mar 2026) Changed paths: M utils/us_astfem_rsa.cpp Log Message: ----------- Add band_forming check for low concentration flag Commit: fb3b2bbbe972a00864dd68b72b5da64234516056 https://github.com/ehb54/ultrascan3/commit/fb3b2bbbe972a00864dd68b72b5da64234516056 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-21 (Sat, 21 Mar 2026) Changed paths: M programs/us_astfem_sim/us_astfem_sim.cpp Log Message: ----------- Fix y-axis scale for band-forming plots Commit: 8aeda75b69a9c2d9df2af035ea7265bb93bdacef https://github.com/ehb54/ultrascan3/commit/8aeda75b69a9c2d9df2af035ea7265bb93bdacef Author: aaron-auc Date: 2026-03-21 (Sat, 21 Mar 2026) Changed paths: A admin/cmake/README.md A admin/cmake/packaging/README.md A pkg/macos/README.md Log Message: ----------- mod: readmes Commit: 81c3a3a5d2a743645b19098027b58ecdc429d634 https://github.com/ehb54/ultrascan3/commit/81c3a3a5d2a743645b19098027b58ecdc429d634 Author: aaron-auc Date: 2026-03-22 (Sun, 22 Mar 2026) Changed paths: R doc/manual/source/2dsa/2dsa_adv.rst R doc/manual/source/2dsa/2dsa_analys.rst R 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Commit: f448548065ff12b1c240270de9d4827cf5f51a79 https://github.com/ehb54/ultrascan3/commit/f448548065ff12b1c240270de9d4827cf5f51a79 Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-24 (Tue, 24 Mar 2026) Changed paths: M .github/workflows/bump-version.yml M .gitignore M CMakeLists.txt M CMakePresets.json M LICENSE.txt M README.manual M admin/cmake/GenerateVersion.cmake A admin/cmake/README.md A admin/cmake/packaging/README.md A admin/cmake/packaging/linux/LinuxDeploy.cmake A admin/cmake/packaging/linux/LinuxHpcDeploy.cmake A admin/cmake/packaging/linux/LinuxHpcPkg.cmake A admin/cmake/packaging/linux/LinuxPkg.cmake A admin/cmake/packaging/macos/MacDeploy.cmake A admin/cmake/packaging/macos/MacHpcDeploy.cmake A admin/cmake/packaging/macos/MacHpcPkg.cmake A admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake A admin/cmake/packaging/macos/MacOsPkg.cmake A admin/cmake/packaging/macos/StageAssistantDev.cmake A admin/cmake/packaging/windows/WinDeploy.cmake 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vcpkg.json Log Message: ----------- Merge branch 'main' into lukas/us_astfem_sim_bfe_fix Commit: e219670a84259a14eabcbd6567f410caa19460e4 https://github.com/ehb54/ultrascan3/commit/e219670a84259a14eabcbd6567f410caa19460e4 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-26 (Thu, 26 Mar 2026) Changed paths: M makeall.sh Log Message: ----------- Fix makeall.sh permissions Commit: ffbfc46c1f6425db8f285c8ebfe83093848eb1b6 https://github.com/ehb54/ultrascan3/commit/ffbfc46c1f6425db8f285c8ebfe83093848eb1b6 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-26 (Thu, 26 Mar 2026) Changed paths: M qmakeall.sh Log Message: ----------- Fix qmakeall.sh permissions Commit: ce69cccd373c62d3682696c7c1e3afbec47ca21c https://github.com/ehb54/ultrascan3/commit/ce69cccd373c62d3682696c7c1e3afbec47ca21c Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-27 (Fri, 27 Mar 2026) Changed paths: M gui/us_solution_gui.cpp M gui/us_solution_gui.h Log Message: ----------- Merge pull request #397 from ehb54/lukas/us_solution_analyte Enforce analyte for solution in us_solution_gui Commit: cdf7099448e0de34a4e877280839f6acfacf5596 https://github.com/ehb54/ultrascan3/commit/cdf7099448e0de34a4e877280839f6acfacf5596 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-27 (Fri, 27 Mar 2026) Changed paths: M gui/us_solution_gui.cpp M gui/us_solution_gui.h Log Message: ----------- Merge branch 'main' into lukas/us_astfem_sim_bfe_fix Commit: b543a92af379330a545e7dcc63e12daaf3d45239 https://github.com/ehb54/ultrascan3/commit/b543a92af379330a545e7dcc63e12daaf3d45239 Author: alexsav815 Date: 2026-03-27 (Fri, 27 Mar 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- GMP-ABDE -- 4. 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vcpkg.json Log Message: ----------- Merge pull request #401 from ehb54/main pull main into alexey-dev-issue792 Commit: 82d4d191eb9afe4cf103b3792c6730f51eb8bafa https://github.com/ehb54/ultrascan3/commit/82d4d191eb9afe4cf103b3792c6730f51eb8bafa Author: alexsav815 Date: 2026-04-02 (Thu, 02 Apr 2026) Changed paths: M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h Log Message: ----------- GMP-ABDE -- 4. EDIT: ask user if only last scan was selected for each channel before accepting new edit parameters... Commit: e58b784f94dc22571d37ac77acdc90c148ee0004 https://github.com/ehb54/ultrascan3/commit/e58b784f94dc22571d37ac77acdc90c148ee0004 Author: alexsav815 Date: 2026-04-02 (Thu, 02 Apr 2026) Changed paths: M programs/us_abde/us_norm_profile.cpp M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h Log Message: ----------- Merge pull request #398 from ehb54/alexey-dev-issue792 Alexey dev issue792: GMP-ABDE & dataDisk changes Commit: 94b9a553e412fb675ba67eea2c9f665b6207233d https://github.com/ehb54/ultrascan3/commit/94b9a553e412fb675ba67eea2c9f665b6207233d Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/CMakeLists.txt Log Message: ----------- Update CMakeLists to use `${SPHINX_PROJECT}` variables for Qt help file generation paths (`.qhp` and `.qhcp`). Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: e2d7da6bbf9fcc62e4bfa452f5ec19623488611e https://github.com/ehb54/ultrascan3/commit/e2d7da6bbf9fcc62e4bfa452f5ec19623488611e Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/requirements.txt Log Message: ----------- Add `sphinxcontrib-qthelp` and `myst-parser` to documentation requirements for Qt help and Markdown support. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 1e69c5071f55b5bc4963bc33c54c1f5978d9a86f https://github.com/ehb54/ultrascan3/commit/1e69c5071f55b5bc4963bc33c54c1f5978d9a86f Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Enhance Sphinx configuration: add version metadata generation from Git, update QtHelp/HTML output, and refine documentation structure. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 64293373d85c1dd99096806b49351207ccc8fcbd https://github.com/ehb54/ultrascan3/commit/64293373d85c1dd99096806b49351207ccc8fcbd Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/index.rst Log Message: ----------- Expand UltraScan-III documentation: add comprehensive structure, improve navigation with toctree captions, and include download link for PDF manual. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 4996aa594c1ed86a6a18b51f4a2e7f2f312ba230 https://github.com/ehb54/ultrascan3/commit/4996aa594c1ed86a6a18b51f4a2e7f2f312ba230 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: A doc/manual/source/2dsa/2dsa_adv.rst A doc/manual/source/2dsa/2dsa_analys.rst A doc/manual/source/2dsa/2dsa_main.rst A doc/manual/source/2dsa/index.rst A doc/manual/source/3000_rpm.rst A doc/manual/source/3d_plot.rst A doc/manual/source/_static/custom.css A doc/manual/source/_static/images/2dsa_3dplot.png A doc/manual/source/_static/images/2dsa_advan.png A doc/manual/source/_static/images/2dsa_analvv.png A doc/manual/source/_static/images/2dsa_analys.png A doc/manual/source/_static/images/2dsa_main-c.png A doc/manual/source/_static/images/2dsa_main-o.png A doc/manual/source/_static/images/2dsa_resplot.png A doc/manual/source/_static/images/D20W_bar.png A 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Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 34d316c7e97fcdabcf86b0939a85e834d6d878f6 https://github.com/ehb54/ultrascan3/commit/34d316c7e97fcdabcf86b0939a85e834d6d878f6 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/vhw_enhanced.rst Log Message: ----------- Fix typo in vHW documentation: correct "Wieschet" to "Weischet". Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 56e8463890e60e8501b4233fb88a6dd74f0e39f4 https://github.com/ehb54/ultrascan3/commit/56e8463890e60e8501b4233fb88a6dd74f0e39f4 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/index.rst Log Message: ----------- Update Ultrascan-III website URL in documentation. 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Commit: 78763cd74bcca991929a7dc53e314e9e61a755b6 https://github.com/ehb54/ultrascan3/commit/78763cd74bcca991929a7dc53e314e9e61a755b6 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update Sphinx configuration: add `auto_index` extension and adjust sys.path setup for dynamic module resolution. Commit: e67f33a49e896d701d7a71317d8d8b2dcebb45a9 https://github.com/ehb54/ultrascan3/commit/e67f33a49e896d701d7a71317d8d8b2dcebb45a9 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: R doc/manual/source/_static/images/optima_config_edit.png M doc/manual/source/_static/images/optima_config_new.png Log Message: ----------- Update Optima configuration images in documentation: delete outdated file and revise new image. Commit: a0df61141d5869a4c8d57ccdaf8896b84fbf1add https://github.com/ehb54/ultrascan3/commit/a0df61141d5869a4c8d57ccdaf8896b84fbf1add Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/config.rst Log Message: ----------- Standardize header formatting in configuration documentation: adjust underline lengths and update section titles for consistency. Commit: 20a795daec1d9d2b8a1e99a9522c5b0f39516f9f https://github.com/ehb54/ultrascan3/commit/20a795daec1d9d2b8a1e99a9522c5b0f39516f9f Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update Sphinx configuration: fix sys.path insertion to correctly add the current directory. 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Commit: f31826280b208f87c2044d91ceed9b3b725941b8 https://github.com/ehb54/ultrascan3/commit/f31826280b208f87c2044d91ceed9b3b725941b8 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/_static/images/gmp/automation/auto_edit.png M doc/manual/source/_static/images/gmp/automation/data_viewer_tin.png M doc/manual/source/_static/images/gmp/automation/lims.png M doc/manual/source/_static/images/reporter-cmenu.png M doc/manual/source/_static/images/us_project_webed.png Log Message: ----------- Downscale extremely large images Commit: 0d8aa5eb3868f4fa28393c667f367905088267c1 https://github.com/ehb54/ultrascan3/commit/0d8aa5eb3868f4fa28393c667f367905088267c1 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Add support for qthelp exclusive css file Commit: 50222b23f0a251076777810ba005c924ef2ddb00 https://github.com/ehb54/ultrascan3/commit/50222b23f0a251076777810ba005c924ef2ddb00 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: A doc/manual/source/_static/qthelp.css Log Message: ----------- Add `qthelp.css` file to define default styling for QtHelp documentation Commit: 86fcf7036c1ad44220fbb6544552d2e7458fd76e https://github.com/ehb54/ultrascan3/commit/86fcf7036c1ad44220fbb6544552d2e7458fd76e Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/3d_plot.rst M doc/manual/source/config.rst M doc/manual/source/fit_meniscus.rst M doc/manual/source/pseudo3d.rst Log Message: ----------- Standardize help text and add debug text options in configuration documentation. Commit: 38351d9b483d34b0d464cdc0a02cf4d0c711a5f0 https://github.com/ehb54/ultrascan3/commit/38351d9b483d34b0d464cdc0a02cf4d0c711a5f0 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/auto_index.py Log Message: ----------- Refine `auto_index` title processing: improve whitespace handling, enhance dimensional notation standardization, and ensure title case consistency. Commit: 881728a585525975764e48eb87de544e1a8f5ed6 https://github.com/ehb54/ultrascan3/commit/881728a585525975764e48eb87de544e1a8f5ed6 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/fe_match/index.rst Log Message: ----------- Standardize section headers and titles in FE Match documentation for consistency and improve formatting. Commit: 278eeecf4ee5b0f5e03bbcd8eae65e831f15837b https://github.com/ehb54/ultrascan3/commit/278eeecf4ee5b0f5e03bbcd8eae65e831f15837b Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_distrib_plot.rst M doc/manual/source/vhw_enhanced.rst Log Message: ----------- Standardize "van Holde-Weischet" terminology across documentation for improved consistency. Commit: 99bbe83fea89b40008e71864323759b4a75ff8cb https://github.com/ehb54/ultrascan3/commit/99bbe83fea89b40008e71864323759b4a75ff8cb Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/start_page-rpt.rst Log Message: ----------- Standardize section headers, titles, and dimensional notations in documentation for improved formatting and consistency. 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doc/manual/source/buoyancy_editor.rst A doc/manual/source/colorgradient.rst A doc/manual/source/combine_models.rst A doc/manual/source/common_dialogs.rst A doc/manual/source/components.rst M doc/manual/source/conf.py A doc/manual/source/config.rst A doc/manual/source/convert.rst A doc/manual/source/ddist_combine.rst A doc/manual/source/dens_match.rst A doc/manual/source/dmga_init.rst A doc/manual/source/dmga_init_constr.rst A doc/manual/source/experiment/cells.rst A doc/manual/source/experiment/general.rst A doc/manual/source/experiment/import.rst A doc/manual/source/experiment/index.rst A doc/manual/source/experiment/liveupdate.rst A doc/manual/source/experiment/optics.rst A doc/manual/source/experiment/range.rst A doc/manual/source/experiment/rotor.rst A doc/manual/source/experiment/solutions.rst A doc/manual/source/experiment/speeds.rst A doc/manual/source/experiment/submit.rst A doc/manual/source/export_legacy.rst A doc/manual/source/fe_match/fe_match_adv.rst A doc/manual/source/fe_match/fe_match_main.rst A doc/manual/source/fe_match/fe_match_simulate.rst A doc/manual/source/fe_match/index.rst A doc/manual/source/fit_meniscus.rst A doc/manual/source/ga_initialize.rst A doc/manual/source/gmp/gmp.rst A doc/manual/source/gmp/gmp_audit_trail.rst A doc/manual/source/gmp/gmp_automation.rst A doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst A doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst A doc/manual/source/gmp/gmp_data_acquisition/index.rst A doc/manual/source/gmp/gmp_protocol_development.rst A doc/manual/source/gmp/gmp_report_generator.rst A doc/manual/source/gmp/gmp_signature.rst A doc/manual/source/gmp/index.rst A doc/manual/source/grid_editor.rst A doc/manual/source/idist_combine.rst M doc/manual/source/index.rst A doc/manual/source/manage_data.rst A doc/manual/source/model_editor.rst A doc/manual/source/multi-wavelength/index.rst A doc/manual/source/multi-wavelength/mwl_species_fit.rst A 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----------- Merge pull request #402 from ehb54/lukas/manual Add sphinx manual Commit: dd51d90b60e4fd6785c98531588a585dc0fb34ed https://github.com/ehb54/ultrascan3/commit/dd51d90b60e4fd6785c98531588a585dc0fb34ed Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/CMakeLists.txt A doc/manual/source/2dsa/2dsa_adv.rst A doc/manual/source/2dsa/2dsa_analys.rst A doc/manual/source/2dsa/2dsa_main.rst A doc/manual/source/2dsa/index.rst A doc/manual/source/3000_rpm.rst A doc/manual/source/3d_plot.rst R doc/manual/source/_static/css/custom.css A doc/manual/source/_static/custom.css A doc/manual/source/_static/images/2dsa_3dplot.png A doc/manual/source/_static/images/2dsa_advan.png A doc/manual/source/_static/images/2dsa_analvv.png A doc/manual/source/_static/images/2dsa_analys.png A doc/manual/source/_static/images/2dsa_main-c.png A doc/manual/source/_static/images/2dsa_main-o.png A 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----------- Merge pull request #404 from ehb54/main update demeler-doc1 to main Commit: cd2bc2e7c99e075b63a282c8e687e6d0e111670d https://github.com/ehb54/ultrascan3/commit/cd2bc2e7c99e075b63a282c8e687e6d0e111670d Author: Demeler Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/fit_meniscus.rst Log Message: ----------- Modify capitalization in fit meniscus Commit: cc049b493eb8cb3409dd4d22051e345fd80c7982 https://github.com/ehb54/ultrascan3/commit/cc049b493eb8cb3409dd4d22051e345fd80c7982 Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/fit_meniscus.rst Log Message: ----------- Merge pull request #405 from ehb54/demeler-doc1 Demeler doc1 Commit: 78d927e26195be17b4a8ff09959676a6247bcb34 https://github.com/ehb54/ultrascan3/commit/78d927e26195be17b4a8ff09959676a6247bcb34 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-06 (Mon, 06 Apr 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h Log Message: ----------- Ensure zoom stack initialization on zoom button press Commit: dcc8ccbdac5394275563aeee0c8c523a6df45589 https://github.com/ehb54/ultrascan3/commit/dcc8ccbdac5394275563aeee0c8c523a6df45589 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-06 (Mon, 06 Apr 2026) Changed paths: M gui/us_plot.cpp Log Message: ----------- Refactor zoom logic to handle null plots and absolute values Commit: 18c02644a764f585fd585e1af1c21e4d5790b60c https://github.com/ehb54/ultrascan3/commit/18c02644a764f585fd585e1af1c21e4d5790b60c Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h Log Message: ----------- Merge pull request #406 from ehb54/lukas/us_plot_zoom_qwt616 Ensure zoom stack initialization on zoom button press Commit: 560ad03325940930c705ee8d12dc50ad8bcb4d32 https://github.com/ehb54/ultrascan3/commit/560ad03325940930c705ee8d12dc50ad8bcb4d32 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .github/workflows/bump-version.yml M .gitignore M CMakeLists.txt M CMakePresets.json M LICENSE.txt M README.manual M admin/cmake/GenerateVersion.cmake A admin/cmake/README.md A admin/cmake/packaging/README.md A admin/cmake/packaging/linux/LinuxDeploy.cmake A admin/cmake/packaging/linux/LinuxHpcDeploy.cmake A admin/cmake/packaging/linux/LinuxHpcPkg.cmake A admin/cmake/packaging/linux/LinuxPkg.cmake A admin/cmake/packaging/macos/MacDeploy.cmake A admin/cmake/packaging/macos/MacHpcDeploy.cmake A admin/cmake/packaging/macos/MacHpcPkg.cmake A admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake A admin/cmake/packaging/macos/MacOsPkg.cmake A admin/cmake/packaging/macos/StageAssistantDev.cmake A admin/cmake/packaging/windows/WinDeploy.cmake A admin/cmake/packaging/windows/WinPkg.cmake A 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doc/manual/source/solutions/index.rst A doc/manual/source/solutions/solution_edit.rst A doc/manual/source/solutions/solution_new.rst A doc/manual/source/solutions/solution_select.rst A doc/manual/source/solutions/solution_settings.rst A doc/manual/source/start_page-abde.rst A doc/manual/source/start_page-dm.rst A doc/manual/source/start_page-int.rst A doc/manual/source/start_page-mw.rst A doc/manual/source/start_page-new.rst A doc/manual/source/start_page-rpt.rst A doc/manual/source/start_page.rst A doc/manual/source/time_derivative.rst A doc/manual/source/tmst_viewer.rst A doc/manual/source/us_buoyancy.rst A doc/manual/source/us_edit.rst A doc/manual/source/us_equiltime.rst A doc/manual/source/us_extinction.rst A doc/manual/source/us_fds_filemanager.rst A doc/manual/source/us_investigator.rst A doc/manual/source/us_modelmetrics.rst A doc/manual/source/us_project.rst A doc/manual/source/us_spectrum.rst A doc/manual/source/vhw_combine.rst A doc/manual/source/vhw_distrib_plot.rst A doc/manual/source/vhw_enhanced.rst A doc/manual/source/xpn_viewer.rst R doc/manual/template.img.body R doc/manual/tidy.conf R doc/manual/time_derivative.body R doc/manual/ultrascan3.txt R doc/manual/us_buffer.body R doc/manual/us_edit.body R doc/manual/us_edit_mwl.body R doc/manual/us_equiltime.body R doc/manual/us_fds_filemanager.body R doc/manual/us_investigator.body R doc/manual/us_modelmetrics.body R doc/manual/us_project.body R doc/manual/us_solution.body R doc/manual/uscol.body R doc/manual/uscolor2.body R doc/manual/usfont.body R doc/manual/usfont2.body R doc/manual/vhw_combine.body R doc/manual/vhw_distrib_plot.body R doc/manual/vhw_enhanced.body R doc/manual/wrapped-images.lst M gui/CMakeLists.txt M gui/us_help.cpp M gui/us_plot.cpp M gui/us_plot.h M gui/us_solution_gui.cpp M gui/us_solution_gui.h M makeall.sh A pkg/macos/README.md A pkg/macos/component.plist A pkg/macos/distribution.xml.in A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3 A pkg/macos/postinstall A pkg/macos/preinstall A pkg/macos/resources/Welcome.txt.in A pkg/macos/resources/background.png A pkg/macos/ultrascan_sysctl.plist A pkg/macos/uninstall.sh M programs/CMakeLists.txt M programs/us/CMakeLists.txt M programs/us/revision.sh M programs/us/us.cpp M programs/us_abde/us_norm_profile.cpp M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_analysis_profile/us_anapro_utils.cpp M programs/us_astfem_sim/us_astfem_sim.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp M programs/us_helpdaemon/us_helpdaemon.cpp M programs/us_mpi_analysis/2dsa_worker.cpp M programs/us_mpi_analysis/CMakeLists.txt M programs/us_mpi_analysis/pcsa_worker.cpp M programs/us_mpi_analysis/revision.sh M programs/us_mpi_analysis/us_mpi_analysis.cpp M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h M qmakeall.sh M qwtplot3d/CMakeLists.txt A scripts/bootstrap-linux.sh A scripts/bootstrap-macos.sh A scripts/bootstrap-windows.ps1 A scripts/bootstrap.bat M scripts/build.bat M scripts/build.ps1 M scripts/build.sh M test/utils/test_us_crypto.cpp A us-build M utils/CMakeLists.txt M utils/us_astfem_rsa.cpp M utils/us_crypto.cpp M utils/us_memory.cpp M utils/us_run_protocol.cpp M utils/us_run_protocol.h M vcpkg.json Log Message: ----------- Merge branch 'main' into lukas/us_fematch Compare: https://github.com/ehb54/ultrascan3/compare/a69519c6fb88...560ad0332594 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Tue Apr 7 15:56:47 2026 From: noreply at github.com (HabGab) Date: Tue, 07 Apr 2026 14:56:47 -0700 Subject: [us-commits] [ehb54/ultrascan3] f1b1ab: update to latest Message-ID: Branch: refs/heads/lukas/manual_test/make Home: https://github.com/ehb54/ultrascan3 Commit: f1b1aba77a1f2da432e6262d842221eb275d2dd0 https://github.com/ehb54/ultrascan3/commit/f1b1aba77a1f2da432e6262d842221eb275d2dd0 Author: HabGab Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst A doc/manual/source/_static/images/dmga-save.png A doc/manual/source/_static/images/dmga.png A doc/manual/source/_static/images/dmga_constr.png A doc/manual/source/_static/images/fe_dmga_adv.png M doc/manual/source/buoyancy_editor.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/convert.rst M doc/manual/source/dmga_init.rst M doc/manual/source/dmga_init_constr.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/experiment/range.rst M doc/manual/source/export_legacy.rst A doc/manual/source/fe_match/fe_dmga_adv.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/fe_match/index.rst M doc/manual/source/gmp/gmp_automation.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/index.rst M doc/manual/source/multi-wavelength/mwl_species_fit.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/rmsd_query.rst M doc/manual/source/run_details.rst M doc/manual/source/second_moment.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst M doc/manual/source/xpn_viewer.rst Log Message: ----------- update to latest To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Tue Apr 7 16:40:46 2026 From: noreply at github.com (HabGab) Date: Tue, 07 Apr 2026 15:40:46 -0700 Subject: [us-commits] [ehb54/ultrascan3] ff98f3: first link change - integral Message-ID: Branch: refs/heads/lukas/manual_test/make Home: https://github.com/ehb54/ultrascan3 Commit: ff98f3a480b918b42a59334bc0506f87b59b5a37 https://github.com/ehb54/ultrascan3/commit/ff98f3a480b918b42a59334bc0506f87b59b5a37 Author: HabGab Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M programs/us_integral/us_delete_models.h Log Message: ----------- first link change - integral To unsubscribe from these emails, change your notification settings at 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8 10:24:39 2026 From: noreply at github.com (Lukas Dobler) Date: Wed, 08 Apr 2026 09:24:39 -0700 Subject: [us-commits] [ehb54/ultrascan3] 8e3da8: Standardize terminology: replace "Triplicates" wit... Message-ID: Branch: refs/heads/lukas/manual_test/make Home: https://github.com/ehb54/ultrascan3 Commit: 8e3da82ae6b7563f455e97718bb1f335a1c9bfcc https://github.com/ehb54/ultrascan3/commit/8e3da82ae6b7563f455e97718bb1f335a1c9bfcc Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-08 (Wed, 08 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/buffer/buffer_edit.rst M doc/manual/source/buffer/buffer_settings.rst M doc/manual/source/buoyancy_editor.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/convert.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/experiment/range.rst M doc/manual/source/export_legacy.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/gmp/gmp_automation.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/multi-wavelength/mwl_species_fit.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/rmsd_query.rst M doc/manual/source/run_details.rst M doc/manual/source/second_moment.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst M doc/manual/source/xpn_viewer.rst Log Message: ----------- Standardize terminology: replace "Triplicates" with "Triples" across documentation for clarity and consistency. To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Wed Apr 8 10:27:12 2026 From: noreply at github.com (Lukas Dobler) Date: Wed, 08 Apr 2026 09:27:12 -0700 Subject: [us-commits] [ehb54/ultrascan3] 7128a0: Improve test failure messages: use `ADD_FAILURE_AT... Message-ID: Branch: refs/heads/lukas/manual_test/make Home: https://github.com/ehb54/ultrascan3 Commit: 7128a07267ee0a0fd7913ea221c2cd891b7099a8 https://github.com/ehb54/ultrascan3/commit/7128a07267ee0a0fd7913ea221c2cd891b7099a8 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-08 (Wed, 08 Apr 2026) Changed paths: M test/utils/test_us_help_pages.cpp M test/utils/test_us_regex.cpp Log Message: ----------- Improve test failure messages: use `ADD_FAILURE_AT` for precise file/line annotation and enhance regex and help file error clarity Commit: 9cf710938424ec4c02179f22bb8da50b226085c6 https://github.com/ehb54/ultrascan3/commit/9cf710938424ec4c02179f22bb8da50b226085c6 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-08 (Wed, 08 Apr 2026) Changed paths: A .github/gtest-us.json M .github/workflows/unit-tests-v2.yml M .github/workflows/unit-tests.yml Log Message: ----------- Add GoogleTest problem matcher to GitHub Actions workflows for enhanced 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2026 13:45:02 -0700 Subject: [us-commits] [ehb54/us3lims_dbinst] Message-ID: Branch: refs/heads/780-request-pbs-gfac-cleanup Home: https://github.com/ehb54/us3lims_dbinst To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/us3lims_dbinst/settings/notifications From noreply at github.com Thu Apr 9 04:45:26 2026 From: noreply at github.com (HabGab) Date: Thu, 09 Apr 2026 03:45:26 -0700 Subject: [us-commits] [ehb54/ultrascan3] 9a107b: updates Message-ID: Branch: refs/heads/lukas/manual_test/make Home: https://github.com/ehb54/ultrascan3 Commit: 9a107befce5878fa969190700c2a2f6ef48ce068 https://github.com/ehb54/ultrascan3/commit/9a107befce5878fa969190700c2a2f6ef48ce068 Author: HabGab Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: A doc/manual/source/analysprof_general.rst M doc/manual/source/astfem_sim.rst M doc/manual/source/convert.rst A doc/manual/source/ramp_data.rst A doc/manual/source/us_administrator.rst M doc/manual/source/us_edit.rst M programs/us_analysis_profile/us_analysis_profile.h M programs/us_config/us_advanced.cpp M programs/us_edit/us_edit_scan.h M programs/us_edit/us_select_lambdas.h M programs/us_ramp/us_experiment_gui_ra.h Log Message: ----------- updates To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Thu Apr 9 04:46:59 2026 From: noreply at github.com (HabGab) Date: Thu, 09 Apr 2026 03:46:59 -0700 Subject: [us-commits] [ehb54/ultrascan3] 6fe435: images Message-ID: Branch: refs/heads/lukas/manual_test/make Home: https://github.com/ehb54/ultrascan3 Commit: 6fe43510daa8d32555c611669eaa32ab11da07ff https://github.com/ehb54/ultrascan3/commit/6fe43510daa8d32555c611669eaa32ab11da07ff Author: HabGab Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: A doc/manual/source/_static/images/edit_exclude_scan.png A doc/manual/source/_static/images/edit_scan.png Log Message: ----------- images To unsubscribe 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[ehb54/ultrascan3] 6242d4: update Message-ID: Branch: refs/heads/lukas/manual_test/make Home: https://github.com/ehb54/ultrascan3 Commit: 6242d49b69ff170e32c1fd9ada173147b3744e39 https://github.com/ehb54/ultrascan3/commit/6242d49b69ff170e32c1fd9ada173147b3744e39 Author: HabGab Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: A doc/manual/source/global_equil.rst M doc/manual/source/us_edit.rst Log Message: ----------- update To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Thu Apr 9 07:01:30 2026 From: noreply at github.com (HabGab) Date: Thu, 09 Apr 2026 06:01:30 -0700 Subject: [us-commits] [ehb54/ultrascan3] 0924fc: unit test Message-ID: Branch: refs/heads/lukas/manual_test/make Home: https://github.com/ehb54/ultrascan3 Commit: 0924fcb4af9a8403c404ace536fffa1cf6209b6f https://github.com/ehb54/ultrascan3/commit/0924fcb4af9a8403c404ace536fffa1cf6209b6f Author: HabGab Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: M doc/manual/source/astfem_sim.rst M doc/manual/source/index.rst M doc/manual/source/pcsa/index.rst A doc/manual/source/pcsa/load_modelrecs.rst M programs/us_astfem_sim/us_clipdata.h M programs/us_density_match/us_remove_models.h M programs/us_edit/us_exclude_profile.h M programs/us_fematch/us_adv_dmgamc.h M programs/us_globalequil/us_eqfit_control.h M programs/us_globalequil/us_eqmodel_control.h M programs/us_globalequil/us_model_adpars.h M programs/us_globalequil/us_model_select.h M programs/us_pcsa/us_mlplot.h Log Message: ----------- unit test To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Thu Apr 9 07:28:33 2026 From: noreply at github.com (Lukas Dobler) Date: Thu, 09 Apr 2026 06:28:33 -0700 Subject: [us-commits] [ehb54/ultrascan3] c8515e: Fix matcher Message-ID: Branch: refs/heads/lukas/manual_test/make Home: https://github.com/ehb54/ultrascan3 Commit: c8515e182cb1cddab6d51258efd8a99f97c8c667 https://github.com/ehb54/ultrascan3/commit/c8515e182cb1cddab6d51258efd8a99f97c8c667 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: M .github/gtest-us.json Log Message: ----------- Fix matcher To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Thu Apr 9 08:07:33 2026 From: noreply at github.com (HabGab) Date: Thu, 09 Apr 2026 07:07:33 -0700 Subject: [us-commits] [ehb54/ultrascan3] ff35eb: sphynx links Message-ID: Branch: refs/heads/lukas/manual_test/make Home: https://github.com/ehb54/ultrascan3 Commit: ff35eb4d37eed1d9a2fdd2200d69a00adfcdb41c https://github.com/ehb54/ultrascan3/commit/ff35eb4d37eed1d9a2fdd2200d69a00adfcdb41c Author: HabGab Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_analys.rst M doc/manual/source/2dsa/index.rst M doc/manual/source/analyte/analyte_edit.rst M doc/manual/source/analyte/analyte_select.rst M doc/manual/source/astfem_sim.rst M doc/manual/source/buoyancy_editor.rst M doc/manual/source/combine_models.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/components.rst M doc/manual/source/config.rst M doc/manual/source/convert.rst M doc/manual/source/dens_match.rst M doc/manual/source/dmga_init.rst M doc/manual/source/experiment/cells.rst M doc/manual/source/experiment/optics.rst M doc/manual/source/experiment/range.rst M doc/manual/source/experiment/submit.rst M doc/manual/source/export_legacy.rst M doc/manual/source/idist_combine.rst M doc/manual/source/manage_data.rst M doc/manual/source/model_editor.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_adv.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/pseudo3d.rst M doc/manual/source/rmsd_query.rst M doc/manual/source/rotor.rst M doc/manual/source/solutions/solution_edit.rst M doc/manual/source/solutions/solution_select.rst M doc/manual/source/start_page-int.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/vhw_enhanced.rst M programs/us_config/us_xpnhost_db.cpp M programs/us_pcsa/us_mrecs_loader.h Log Message: ----------- sphynx links To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Thu Apr 9 09:42:07 2026 From: noreply at github.com (HabGab) Date: Thu, 09 Apr 2026 08:42:07 -0700 Subject: [us-commits] [ehb54/ultrascan3] 11572c: Update Sphinx build system: include `auto_index.py... Message-ID: Branch: refs/heads/main Home: https://github.com/ehb54/ultrascan3 Commit: 11572ca66d369080b73f5925c9b46c3b7200c538 https://github.com/ehb54/ultrascan3/commit/11572ca66d369080b73f5925c9b46c3b7200c538 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-06 (Mon, 06 Apr 2026) Changed paths: M doc/manual/CMakeLists.txt M doc/manual/Makefile M doc/manual/source/index.rst Log Message: ----------- Update Sphinx build system: include `auto_index.py`, link PDF manual in HTML, and clean PDF on `make clean`. Commit: e2fbf48c659f3fad2922c9067a43f1b3bdc0ec5e https://github.com/ehb54/ultrascan3/commit/e2fbf48c659f3fad2922c9067a43f1b3bdc0ec5e Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-06 (Mon, 06 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update LaTeX configuration: set `latex_use_xindy` to False and redefine font settings for better Unicode handling and compatibility. Commit: f7169d62eaece4fd69dd8f88ab06432a8bb390f0 https://github.com/ehb54/ultrascan3/commit/f7169d62eaece4fd69dd8f88ab06432a8bb390f0 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h A test/utils/test_us_help_pages.cpp Log Message: ----------- Add unit test for validating existence of help pages and refactor zoom stack initialization for improved consistency. Commit: a542b58b077c8629e05993705eb0967c8e2ed720 https://github.com/ehb54/ultrascan3/commit/a542b58b077c8629e05993705eb0967c8e2ed720 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .gitignore Log Message: ----------- Update .gitignore to exclude `doc/manual/build` Commit: 3841b3da9b269c931e61bd8332217ea7edafa5ce https://github.com/ehb54/ultrascan3/commit/3841b3da9b269c931e61bd8332217ea7edafa5ce Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M utils/CMakeLists.txt M utils/us_extern.h Log Message: ----------- Add static library support: define `US_UTIL_STATIC` and conditionally update `us_extern.h`. Commit: 8bd5bb513393dabe50c036ffbfe60f96a6b3ca21 https://github.com/ehb54/ultrascan3/commit/8bd5bb513393dabe50c036ffbfe60f96a6b3ca21 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M utils/us_buffer.h Log Message: ----------- Initialize `grad_form` flag to `false` in `us_buffer.h`. Commit: 923260944deb1b79e310ceb98a16effa5b5090ca https://github.com/ehb54/ultrascan3/commit/923260944deb1b79e310ceb98a16effa5b5090ca Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M gui/us_abstractrotor_gui.h M gui/us_analyte_gui.h M gui/us_buffer_gui.h M gui/us_data_loader.h M gui/us_experiment_gui.h M gui/us_get_run.h M gui/us_load_auc.h M gui/us_model_loader.h M gui/us_select_triples.h M gui/us_solution_gui.h M programs/us_2dsa/us_adv_analysis_2d.h M programs/us_2dsa/us_analysis_control_2d.h M programs/us_2dsa/us_plot_control_2d.h M programs/us_esigner_gmp/us_esigner_gmp.h M programs/us_fematch/us_advanced_fem.h M programs/us_fematch/us_fematch.h M programs/us_fematch/us_plot_control_fem.h M programs/us_mwl_species_fit/us_mwl_species_fit.h M programs/us_mwl_species_sim/us_mwl_species_sim.h M programs/us_mwl_spectra/us_mwl_spectra.h M programs/us_mwl_spectra/us_mwls_pltctl.h M programs/us_mwlr_viewer/us_mwlr_viewer.h M programs/us_pcsa/us_adv_analysis_pc.h M programs/us_pcsa/us_analysis_control_pc.h M programs/us_pcsa/us_pcsa.h M programs/us_pcsa/us_plot_control_pc.h M programs/us_pcsa/us_rpscan.h M programs/us_pseudo3d_combine/us_pseudo3d_combine.h M programs/us_pseudo3d_combine/us_remove_distros.h M programs/us_ramp/us_select_triples_ra.h M programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_vhw_combine/us_vhwc_pltctl.h Log Message: ----------- Update help file paths for improved documentation consistency and organization. Commit: 78e6d90c9756f558dd3c67e03ec447dbaa996a8a https://github.com/ehb54/ultrascan3/commit/78e6d90c9756f558dd3c67e03ec447dbaa996a8a Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .github/workflows/doc-build.yml Log Message: ----------- Let github action only build the documnetaion with the qthelp builder, because latex dependencies are currently missing Commit: 05eb1370b6158124bcafd398fef77466e66be0aa https://github.com/ehb54/ultrascan3/commit/05eb1370b6158124bcafd398fef77466e66be0aa Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h Log Message: ----------- Remove feature commit in wrong branch Commit: 3c1312a39ac562248315fb410c301c9d8eab79f5 https://github.com/ehb54/ultrascan3/commit/3c1312a39ac562248315fb410c301c9d8eab79f5 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h Log Message: ----------- Merge branch 'main' into lukas/manual_test/make Commit: 99fc3a66c861b6275cedd397bfd03e34e85d9435 https://github.com/ehb54/ultrascan3/commit/99fc3a66c861b6275cedd397bfd03e34e85d9435 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: A .github/workflows/sphinx-doc-build.yml Log Message: ----------- Add GitHub Actions workflow for Sphinx documentation build Commit: 5fa677c2afd3175fa29a37165561f4125a867c5d https://github.com/ehb54/ultrascan3/commit/5fa677c2afd3175fa29a37165561f4125a867c5d Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .github/workflows/sphinx-doc-build.yml Log Message: ----------- Refactor Sphinx GitHub Actions workflow: replace deprecated problem matcher usage, streamline build commands, and add error handling. Commit: b91a5ae2fecdc63970efdf031426e000eff8cc6e https://github.com/ehb54/ultrascan3/commit/b91a5ae2fecdc63970efdf031426e000eff8cc6e Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: A .github/sphinx-matcher.json Log Message: ----------- Add Sphinx problem matcher configuration for GitHub Actions Commit: 45da34200ce91a23a4f1f8d168e7a1ee612b03b5 https://github.com/ehb54/ultrascan3/commit/45da34200ce91a23a4f1f8d168e7a1ee612b03b5 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .github/workflows/sphinx-doc-build.yml Log Message: ----------- Annotate Sphinx build warnings in GitHub Actions workflow and update qthelp build step for improved error handling. Commit: f3750319ef93a4a4b5f925ffaa38acd1ebb8f6f5 https://github.com/ehb54/ultrascan3/commit/f3750319ef93a4a4b5f925ffaa38acd1ebb8f6f5 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .github/workflows/sphinx-doc-build.yml Log Message: ----------- Replace custom Sphinx warning annotation script with `sphinx-doc/github-problem-matcher` for streamlined GitHub Actions workflow. Commit: bc2b74fbb9b5698c8269f2d6b060ce420ab6697a https://github.com/ehb54/ultrascan3/commit/bc2b74fbb9b5698c8269f2d6b060ce420ab6697a Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: R .github/sphinx-matcher.json Log Message: ----------- Remove obsolete Sphinx problem matcher configuration from GitHub Actions. Commit: 715a3fd86ec9bdb692b3e1fa0ce393a86548c213 https://github.com/ehb54/ultrascan3/commit/715a3fd86ec9bdb692b3e1fa0ce393a86548c213 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/convert.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/export_legacy.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/second_moment.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst Log Message: ----------- Fix triplicates to triples Commit: f1b1aba77a1f2da432e6262d842221eb275d2dd0 https://github.com/ehb54/ultrascan3/commit/f1b1aba77a1f2da432e6262d842221eb275d2dd0 Author: HabGab Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst A doc/manual/source/_static/images/dmga-save.png A doc/manual/source/_static/images/dmga.png A doc/manual/source/_static/images/dmga_constr.png A doc/manual/source/_static/images/fe_dmga_adv.png M doc/manual/source/buoyancy_editor.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/convert.rst M doc/manual/source/dmga_init.rst M doc/manual/source/dmga_init_constr.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/experiment/range.rst M doc/manual/source/export_legacy.rst A doc/manual/source/fe_match/fe_dmga_adv.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/fe_match/index.rst M doc/manual/source/gmp/gmp_automation.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/index.rst M doc/manual/source/multi-wavelength/mwl_species_fit.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/rmsd_query.rst M doc/manual/source/run_details.rst M doc/manual/source/second_moment.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst M doc/manual/source/xpn_viewer.rst Log Message: ----------- update to latest Commit: ff98f3a480b918b42a59334bc0506f87b59b5a37 https://github.com/ehb54/ultrascan3/commit/ff98f3a480b918b42a59334bc0506f87b59b5a37 Author: HabGab Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M programs/us_integral/us_delete_models.h Log Message: ----------- first link change - integral Commit: 584135021b461a9f753c2ac63b2f37df4cd85b0b https://github.com/ehb54/ultrascan3/commit/584135021b461a9f753c2ac63b2f37df4cd85b0b Author: HabGab Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: A doc/manual/source/_static/images/delseltrip.png M doc/manual/source/common_dialogs.rst M programs/us_experiment/us_experiment_gui_optima.h M programs/us_integral/us_delete_models.h M programs/us_integral/us_integral.h Log Message: ----------- update us_experiment show.help Commit: 8e3da82ae6b7563f455e97718bb1f335a1c9bfcc https://github.com/ehb54/ultrascan3/commit/8e3da82ae6b7563f455e97718bb1f335a1c9bfcc Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-08 (Wed, 08 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/buffer/buffer_edit.rst M doc/manual/source/buffer/buffer_settings.rst M doc/manual/source/buoyancy_editor.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/convert.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/experiment/range.rst M doc/manual/source/export_legacy.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/gmp/gmp_automation.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/multi-wavelength/mwl_species_fit.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/rmsd_query.rst M doc/manual/source/run_details.rst M doc/manual/source/second_moment.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst M doc/manual/source/xpn_viewer.rst Log Message: ----------- Standardize terminology: replace "Triplicates" with "Triples" across documentation for clarity and consistency. Commit: 7128a07267ee0a0fd7913ea221c2cd891b7099a8 https://github.com/ehb54/ultrascan3/commit/7128a07267ee0a0fd7913ea221c2cd891b7099a8 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-08 (Wed, 08 Apr 2026) Changed paths: M test/utils/test_us_help_pages.cpp M test/utils/test_us_regex.cpp Log Message: ----------- Improve test failure messages: use `ADD_FAILURE_AT` for precise file/line annotation and enhance regex and help file error clarity Commit: 9cf710938424ec4c02179f22bb8da50b226085c6 https://github.com/ehb54/ultrascan3/commit/9cf710938424ec4c02179f22bb8da50b226085c6 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-08 (Wed, 08 Apr 2026) Changed paths: A .github/gtest-us.json M .github/workflows/unit-tests-v2.yml M .github/workflows/unit-tests.yml Log Message: ----------- Add GoogleTest problem matcher to GitHub Actions workflows for enhanced test failure annotation Commit: d849477c413c4de8c709970000b9beed563952aa 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https://github.com/ehb54/ultrascan3/commit/9a107befce5878fa969190700c2a2f6ef48ce068 Author: HabGab Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: A doc/manual/source/analysprof_general.rst M doc/manual/source/astfem_sim.rst M doc/manual/source/convert.rst A doc/manual/source/ramp_data.rst A doc/manual/source/us_administrator.rst M doc/manual/source/us_edit.rst M programs/us_analysis_profile/us_analysis_profile.h M programs/us_config/us_advanced.cpp M programs/us_edit/us_edit_scan.h M programs/us_edit/us_select_lambdas.h M programs/us_ramp/us_experiment_gui_ra.h Log Message: ----------- updates Commit: 6fe43510daa8d32555c611669eaa32ab11da07ff https://github.com/ehb54/ultrascan3/commit/6fe43510daa8d32555c611669eaa32ab11da07ff Author: HabGab Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: A doc/manual/source/_static/images/edit_exclude_scan.png A doc/manual/source/_static/images/edit_scan.png Log Message: ----------- images Commit: 290b3ed2436ce1c133fb54567579f869c3e2ea70 https://github.com/ehb54/ultrascan3/commit/290b3ed2436ce1c133fb54567579f869c3e2ea70 Author: HabGab Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: M doc/manual/source/dens_match.rst M programs/us_density_match/us_model_params.h Log Message: ----------- update link Commit: 6242d49b69ff170e32c1fd9ada173147b3744e39 https://github.com/ehb54/ultrascan3/commit/6242d49b69ff170e32c1fd9ada173147b3744e39 Author: HabGab Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: A doc/manual/source/global_equil.rst M doc/manual/source/us_edit.rst Log Message: ----------- update Commit: 0924fcb4af9a8403c404ace536fffa1cf6209b6f https://github.com/ehb54/ultrascan3/commit/0924fcb4af9a8403c404ace536fffa1cf6209b6f Author: HabGab Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: M doc/manual/source/astfem_sim.rst M doc/manual/source/index.rst M doc/manual/source/pcsa/index.rst A doc/manual/source/pcsa/load_modelrecs.rst M programs/us_astfem_sim/us_clipdata.h M programs/us_density_match/us_remove_models.h M programs/us_edit/us_exclude_profile.h M programs/us_fematch/us_adv_dmgamc.h M programs/us_globalequil/us_eqfit_control.h M programs/us_globalequil/us_eqmodel_control.h M programs/us_globalequil/us_model_adpars.h M programs/us_globalequil/us_model_select.h M programs/us_pcsa/us_mlplot.h Log Message: ----------- unit test Commit: c8515e182cb1cddab6d51258efd8a99f97c8c667 https://github.com/ehb54/ultrascan3/commit/c8515e182cb1cddab6d51258efd8a99f97c8c667 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: M .github/gtest-us.json Log Message: ----------- Fix matcher Commit: ff35eb4d37eed1d9a2fdd2200d69a00adfcdb41c https://github.com/ehb54/ultrascan3/commit/ff35eb4d37eed1d9a2fdd2200d69a00adfcdb41c Author: HabGab Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_analys.rst M doc/manual/source/2dsa/index.rst M doc/manual/source/analyte/analyte_edit.rst M doc/manual/source/analyte/analyte_select.rst M doc/manual/source/astfem_sim.rst M doc/manual/source/buoyancy_editor.rst M doc/manual/source/combine_models.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/components.rst M doc/manual/source/config.rst M doc/manual/source/convert.rst M doc/manual/source/dens_match.rst M doc/manual/source/dmga_init.rst M doc/manual/source/experiment/cells.rst M doc/manual/source/experiment/optics.rst M doc/manual/source/experiment/range.rst M doc/manual/source/experiment/submit.rst M doc/manual/source/export_legacy.rst M doc/manual/source/idist_combine.rst M doc/manual/source/manage_data.rst M doc/manual/source/model_editor.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_adv.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/pseudo3d.rst M doc/manual/source/rmsd_query.rst M doc/manual/source/rotor.rst M doc/manual/source/solutions/solution_edit.rst M doc/manual/source/solutions/solution_select.rst M doc/manual/source/start_page-int.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/vhw_enhanced.rst M programs/us_config/us_xpnhost_db.cpp M programs/us_pcsa/us_mrecs_loader.h Log Message: ----------- sphynx links Commit: 287fbcbd18bec2e702fabfb4298a69a0b62ee537 https://github.com/ehb54/ultrascan3/commit/287fbcbd18bec2e702fabfb4298a69a0b62ee537 Author: HabGab Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: A .github/gtest-us.json M .github/workflows/doc-build.yml A .github/workflows/sphinx-doc-build.yml M .github/workflows/unit-tests-v2.yml M .github/workflows/unit-tests.yml M .gitignore M doc/manual/CMakeLists.txt M doc/manual/Makefile M doc/manual/source/2dsa/2dsa_analys.rst M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/2dsa/index.rst A doc/manual/source/_static/images/delseltrip.png A doc/manual/source/_static/images/dmga-save.png A doc/manual/source/_static/images/dmga.png A doc/manual/source/_static/images/dmga_constr.png A doc/manual/source/_static/images/edit_exclude_scan.png A doc/manual/source/_static/images/edit_scan.png A doc/manual/source/_static/images/fe_dmga_adv.png A doc/manual/source/_static/images/select_prefilt.png A doc/manual/source/analysprof_general.rst M doc/manual/source/analyte/analyte_edit.rst M doc/manual/source/analyte/analyte_select.rst M doc/manual/source/astfem_sim.rst M doc/manual/source/buffer/buffer_edit.rst M doc/manual/source/buffer/buffer_settings.rst M doc/manual/source/buoyancy_editor.rst M doc/manual/source/combine_models.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/components.rst M doc/manual/source/conf.py M doc/manual/source/config.rst M doc/manual/source/convert.rst M doc/manual/source/dens_match.rst M doc/manual/source/dmga_init.rst M doc/manual/source/dmga_init_constr.rst M doc/manual/source/experiment/cells.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/experiment/optics.rst M doc/manual/source/experiment/range.rst M doc/manual/source/experiment/submit.rst M doc/manual/source/export_legacy.rst A doc/manual/source/fe_match/fe_dmga_adv.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/fe_match/index.rst A doc/manual/source/global_equil.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/idist_combine.rst M doc/manual/source/index.rst M doc/manual/source/manage_data.rst M doc/manual/source/model_editor.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/pcsa/index.rst A doc/manual/source/pcsa/load_modelrecs.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_adv.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/pseudo3d.rst A doc/manual/source/ramp_data.rst M doc/manual/source/rmsd_query.rst M doc/manual/source/rotor.rst M doc/manual/source/second_moment.rst M doc/manual/source/solutions/solution_edit.rst M doc/manual/source/solutions/solution_select.rst M doc/manual/source/start_page-int.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst A doc/manual/source/us_administrator.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst M gui/us_abstractrotor_gui.h M gui/us_analyte_gui.h M gui/us_buffer_gui.h M gui/us_data_loader.h M gui/us_experiment_gui.h M gui/us_get_run.h M gui/us_load_auc.h M gui/us_model_loader.h M gui/us_select_edits.h M gui/us_select_item.h M gui/us_select_runs.h M gui/us_select_triples.h M gui/us_solution_gui.h M programs/us_2dsa/us_2dsa.h M programs/us_2dsa/us_adv_analysis_2d.h M programs/us_2dsa/us_analysis_control_2d.h M programs/us_2dsa/us_plot_control_2d.h M programs/us_analysis_profile/us_analysis_profile.h M programs/us_astfem_sim/us_clipdata.h M programs/us_config/us_admin.cpp M programs/us_config/us_advanced.cpp M programs/us_config/us_color.cpp M programs/us_config/us_database.cpp M programs/us_config/us_font.cpp M programs/us_config/us_xpnhost.cpp M programs/us_config/us_xpnhost_db.cpp M programs/us_density_match/us_model_params.h M programs/us_density_match/us_remove_models.h M programs/us_edit/us_edit_scan.h M programs/us_edit/us_exclude_profile.h M programs/us_edit/us_select_lambdas.h M programs/us_esigner_gmp/us_esigner_gmp.h M programs/us_experiment/us_experiment_gui_optima.h M programs/us_fematch/us_adv_dmgamc.h M programs/us_fematch/us_advanced_fem.h M programs/us_fematch/us_fematch.h M programs/us_fematch/us_plot_control_fem.h M programs/us_globalequil/us_eqfit_control.h M programs/us_globalequil/us_eqmodel_control.h M programs/us_globalequil/us_model_adpars.h M programs/us_globalequil/us_model_select.h M programs/us_integral/us_delete_models.h M programs/us_integral/us_integral.h M programs/us_mwl_species_fit/us_mwl_species_fit.h M programs/us_mwl_species_sim/us_mwl_species_sim.h M programs/us_mwl_spectra/us_mwl_spectra.h M programs/us_mwl_spectra/us_mwls_pltctl.h M programs/us_mwlr_viewer/us_mwl_pltctrl.h M programs/us_mwlr_viewer/us_mwlr_viewer.h M programs/us_pcsa/us_adv_analysis_pc.h M programs/us_pcsa/us_analysis_control_pc.h M programs/us_pcsa/us_mlplot.h M programs/us_pcsa/us_mrecs_loader.h M programs/us_pcsa/us_pcsa.h M programs/us_pcsa/us_plot_control_pc.h M programs/us_pcsa/us_rpscan.h M programs/us_pseudo3d_combine/us_pseudo3d_combine.h M programs/us_pseudo3d_combine/us_remove_distros.h M programs/us_ramp/us_experiment_gui_ra.h M programs/us_ramp/us_select_triples_ra.h M programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_vhw_combine/us_vhwc_pltctl.h A test/utils/test_us_help_pages.cpp M test/utils/test_us_regex.cpp M utils/CMakeLists.txt M utils/us_buffer.h M utils/us_extern.h Log Message: ----------- Merge pull request #408 from ehb54/lukas/manual_test/make Enhance documentation build system and improve Unicode handling Compare: https://github.com/ehb54/ultrascan3/compare/18c02644a764...287fbcbd18be To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Thu Apr 9 15:02:38 2026 From: noreply at github.com (alexsav815) Date: Thu, 09 Apr 2026 14:02:38 -0700 Subject: [us-commits] [ehb54/ultrascan3] Message-ID: Branch: refs/heads/alexey-dev-issue814 Home: https://github.com/ehb54/ultrascan3 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Thu Apr 9 15:23:44 2026 From: noreply at github.com (alexsav815) Date: Thu, 09 Apr 2026 14:23:44 -0700 Subject: [us-commits] [ehb54/ultrascan3] 29678f: GMP -- additional check for the protocol internal... Message-ID: Branch: refs/heads/alexey-dev-issue814 Home: https://github.com/ehb54/ultrascan3 Commit: 29678f933d80ecac003838e4bde2c37a65512482 https://github.com/ehb54/ultrascan3/commit/29678f933d80ecac003838e4bde2c37a65512482 Author: alexsav815 Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: M utils/us_run_protocol.cpp Log Message: ----------- GMP -- additional check for the protocol internals equality before submitting GMP run: check for operator (and revs & approvers)... To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Fri Apr 10 11:04:36 2026 From: noreply at github.com (HabGab) Date: Fri, 10 Apr 2026 10:04:36 -0700 Subject: [us-commits] [ehb54/ultrascan3] 77adb0: check new branch Message-ID: Branch: refs/heads/lukas/manual_test/make Home: https://github.com/ehb54/ultrascan3 Commit: 77adb01c3a9c4133da796314b1007c031f6dd089 https://github.com/ehb54/ultrascan3/commit/77adb01c3a9c4133da796314b1007c031f6dd089 Author: Haben Gabir Date: 2026-04-10 (Fri, 10 Apr 2026) Changed paths: M doc/manual/source/config.rst Log Message: ----------- check new branch To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Fri Apr 10 13:47:35 2026 From: noreply at github.com (Lukas Dobler) Date: Fri, 10 Apr 2026 12:47:35 -0700 Subject: [us-commits] [ehb54/ultrascan3] 287fbc: Merge pull request #408 from ehb54/lukas/manual_te... Message-ID: Branch: refs/heads/lukas/manual_test/make Home: https://github.com/ehb54/ultrascan3 Commit: 287fbcbd18bec2e702fabfb4298a69a0b62ee537 https://github.com/ehb54/ultrascan3/commit/287fbcbd18bec2e702fabfb4298a69a0b62ee537 Author: HabGab Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: A .github/gtest-us.json M .github/workflows/doc-build.yml A .github/workflows/sphinx-doc-build.yml M .github/workflows/unit-tests-v2.yml M .github/workflows/unit-tests.yml M .gitignore M doc/manual/CMakeLists.txt M doc/manual/Makefile M doc/manual/source/2dsa/2dsa_analys.rst M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/2dsa/index.rst A doc/manual/source/_static/images/delseltrip.png A doc/manual/source/_static/images/dmga-save.png A doc/manual/source/_static/images/dmga.png A doc/manual/source/_static/images/dmga_constr.png A doc/manual/source/_static/images/edit_exclude_scan.png A doc/manual/source/_static/images/edit_scan.png A doc/manual/source/_static/images/fe_dmga_adv.png A doc/manual/source/_static/images/select_prefilt.png A doc/manual/source/analysprof_general.rst M doc/manual/source/analyte/analyte_edit.rst M doc/manual/source/analyte/analyte_select.rst M doc/manual/source/astfem_sim.rst M doc/manual/source/buffer/buffer_edit.rst M doc/manual/source/buffer/buffer_settings.rst M doc/manual/source/buoyancy_editor.rst M doc/manual/source/combine_models.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/components.rst M doc/manual/source/conf.py M doc/manual/source/config.rst M doc/manual/source/convert.rst M doc/manual/source/dens_match.rst M doc/manual/source/dmga_init.rst M doc/manual/source/dmga_init_constr.rst M doc/manual/source/experiment/cells.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/experiment/optics.rst M doc/manual/source/experiment/range.rst M doc/manual/source/experiment/submit.rst M doc/manual/source/export_legacy.rst A doc/manual/source/fe_match/fe_dmga_adv.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/fe_match/index.rst A doc/manual/source/global_equil.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/idist_combine.rst M doc/manual/source/index.rst M doc/manual/source/manage_data.rst M doc/manual/source/model_editor.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/pcsa/index.rst A doc/manual/source/pcsa/load_modelrecs.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_adv.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/pseudo3d.rst A doc/manual/source/ramp_data.rst M doc/manual/source/rmsd_query.rst M doc/manual/source/rotor.rst M doc/manual/source/second_moment.rst M doc/manual/source/solutions/solution_edit.rst M doc/manual/source/solutions/solution_select.rst M doc/manual/source/start_page-int.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst A doc/manual/source/us_administrator.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst M gui/us_abstractrotor_gui.h M gui/us_analyte_gui.h M gui/us_buffer_gui.h M gui/us_data_loader.h M gui/us_experiment_gui.h M gui/us_get_run.h M gui/us_load_auc.h M gui/us_model_loader.h M gui/us_select_edits.h M gui/us_select_item.h M gui/us_select_runs.h M gui/us_select_triples.h M gui/us_solution_gui.h M programs/us_2dsa/us_2dsa.h M programs/us_2dsa/us_adv_analysis_2d.h M programs/us_2dsa/us_analysis_control_2d.h M programs/us_2dsa/us_plot_control_2d.h M programs/us_analysis_profile/us_analysis_profile.h M programs/us_astfem_sim/us_clipdata.h M programs/us_config/us_admin.cpp M programs/us_config/us_advanced.cpp M programs/us_config/us_color.cpp M programs/us_config/us_database.cpp M programs/us_config/us_font.cpp M programs/us_config/us_xpnhost.cpp M programs/us_config/us_xpnhost_db.cpp M programs/us_density_match/us_model_params.h M programs/us_density_match/us_remove_models.h M programs/us_edit/us_edit_scan.h M programs/us_edit/us_exclude_profile.h M programs/us_edit/us_select_lambdas.h M programs/us_esigner_gmp/us_esigner_gmp.h M programs/us_experiment/us_experiment_gui_optima.h M programs/us_fematch/us_adv_dmgamc.h M programs/us_fematch/us_advanced_fem.h M programs/us_fematch/us_fematch.h M programs/us_fematch/us_plot_control_fem.h M programs/us_globalequil/us_eqfit_control.h M programs/us_globalequil/us_eqmodel_control.h M programs/us_globalequil/us_model_adpars.h M programs/us_globalequil/us_model_select.h M programs/us_integral/us_delete_models.h M programs/us_integral/us_integral.h M programs/us_mwl_species_fit/us_mwl_species_fit.h M programs/us_mwl_species_sim/us_mwl_species_sim.h M programs/us_mwl_spectra/us_mwl_spectra.h M programs/us_mwl_spectra/us_mwls_pltctl.h M programs/us_mwlr_viewer/us_mwl_pltctrl.h M programs/us_mwlr_viewer/us_mwlr_viewer.h M programs/us_pcsa/us_adv_analysis_pc.h M programs/us_pcsa/us_analysis_control_pc.h M programs/us_pcsa/us_mlplot.h M programs/us_pcsa/us_mrecs_loader.h M programs/us_pcsa/us_pcsa.h M programs/us_pcsa/us_plot_control_pc.h M programs/us_pcsa/us_rpscan.h M programs/us_pseudo3d_combine/us_pseudo3d_combine.h M programs/us_pseudo3d_combine/us_remove_distros.h M programs/us_ramp/us_experiment_gui_ra.h M programs/us_ramp/us_select_triples_ra.h M programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_vhw_combine/us_vhwc_pltctl.h A test/utils/test_us_help_pages.cpp M test/utils/test_us_regex.cpp M utils/CMakeLists.txt M utils/us_buffer.h M utils/us_extern.h Log Message: ----------- Merge pull request #408 from ehb54/lukas/manual_test/make Enhance documentation build system and improve Unicode handling Commit: 0a0e0eca8a8da8aa4db25e74431e3d89b5808edb https://github.com/ehb54/ultrascan3/commit/0a0e0eca8a8da8aa4db25e74431e3d89b5808edb Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-10 (Fri, 10 Apr 2026) Changed paths: Log Message: ----------- Merge pull request #410 from ehb54/main Merge pull request #408 from ehb54/lukas/manual_test/make Compare: https://github.com/ehb54/ultrascan3/compare/77adb01c3a9c...0a0e0eca8a8d To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Fri Apr 10 13:50:02 2026 From: noreply at github.com (Lukas Dobler) Date: Fri, 10 Apr 2026 12:50:02 -0700 Subject: [us-commits] [ehb54/ultrascan3] 77adb0: check new branch Message-ID: Branch: refs/heads/haben/docs-crosslinking Home: https://github.com/ehb54/ultrascan3 Commit: 77adb01c3a9c4133da796314b1007c031f6dd089 https://github.com/ehb54/ultrascan3/commit/77adb01c3a9c4133da796314b1007c031f6dd089 Author: Haben Gabir Date: 2026-04-10 (Fri, 10 Apr 2026) Changed paths: M doc/manual/source/config.rst Log Message: ----------- check new branch Commit: 0a0e0eca8a8da8aa4db25e74431e3d89b5808edb https://github.com/ehb54/ultrascan3/commit/0a0e0eca8a8da8aa4db25e74431e3d89b5808edb Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-10 (Fri, 10 Apr 2026) Changed paths: Log Message: ----------- Merge pull request #410 from ehb54/main Merge pull request #408 from ehb54/lukas/manual_test/make Compare: https://github.com/ehb54/ultrascan3/compare/77adb01c3a9c%5E...0a0e0eca8a8d To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Fri Apr 10 13:50:05 2026 From: noreply at github.com (Lukas Dobler) Date: Fri, 10 Apr 2026 12:50:05 -0700 Subject: [us-commits] [ehb54/ultrascan3] Message-ID: Branch: refs/heads/lukas/manual_test/make Home: https://github.com/ehb54/ultrascan3 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Sat Apr 11 13:16:41 2026 From: noreply at github.com (Lukas Dobler) Date: Sat, 11 Apr 2026 12:16:41 -0700 Subject: [us-commits] [ehb54/us3lims_dbinst] Message-ID: Branch: refs/heads/lukas/data_info Home: https://github.com/ehb54/us3lims_dbinst To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/us3lims_dbinst/settings/notifications From noreply at github.com Sun Apr 12 04:10:55 2026 From: noreply at github.com (Lukas Dobler) Date: Sun, 12 Apr 2026 03:10:55 -0700 Subject: [us-commits] [ehb54/ultrascan3] 11572c: Update Sphinx build system: include `auto_index.py... Message-ID: Branch: refs/heads/lukas/us_fematch Home: https://github.com/ehb54/ultrascan3 Commit: 11572ca66d369080b73f5925c9b46c3b7200c538 https://github.com/ehb54/ultrascan3/commit/11572ca66d369080b73f5925c9b46c3b7200c538 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-06 (Mon, 06 Apr 2026) Changed paths: M doc/manual/CMakeLists.txt M doc/manual/Makefile M doc/manual/source/index.rst Log Message: ----------- Update Sphinx build system: include `auto_index.py`, link PDF manual in HTML, and clean PDF on `make clean`. Commit: e2fbf48c659f3fad2922c9067a43f1b3bdc0ec5e https://github.com/ehb54/ultrascan3/commit/e2fbf48c659f3fad2922c9067a43f1b3bdc0ec5e Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-06 (Mon, 06 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update LaTeX configuration: set `latex_use_xindy` to False and redefine font settings for better Unicode handling and compatibility. Commit: f7169d62eaece4fd69dd8f88ab06432a8bb390f0 https://github.com/ehb54/ultrascan3/commit/f7169d62eaece4fd69dd8f88ab06432a8bb390f0 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h A test/utils/test_us_help_pages.cpp Log Message: ----------- Add unit test for validating existence of help pages and refactor zoom stack initialization for improved consistency. Commit: a542b58b077c8629e05993705eb0967c8e2ed720 https://github.com/ehb54/ultrascan3/commit/a542b58b077c8629e05993705eb0967c8e2ed720 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .gitignore Log Message: ----------- Update .gitignore to exclude `doc/manual/build` Commit: 3841b3da9b269c931e61bd8332217ea7edafa5ce https://github.com/ehb54/ultrascan3/commit/3841b3da9b269c931e61bd8332217ea7edafa5ce Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M utils/CMakeLists.txt M utils/us_extern.h Log Message: ----------- Add static library support: define `US_UTIL_STATIC` and conditionally update `us_extern.h`. Commit: 8bd5bb513393dabe50c036ffbfe60f96a6b3ca21 https://github.com/ehb54/ultrascan3/commit/8bd5bb513393dabe50c036ffbfe60f96a6b3ca21 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M utils/us_buffer.h Log Message: ----------- Initialize `grad_form` flag to `false` in `us_buffer.h`. Commit: 923260944deb1b79e310ceb98a16effa5b5090ca https://github.com/ehb54/ultrascan3/commit/923260944deb1b79e310ceb98a16effa5b5090ca Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M gui/us_abstractrotor_gui.h M gui/us_analyte_gui.h M gui/us_buffer_gui.h M gui/us_data_loader.h M gui/us_experiment_gui.h M gui/us_get_run.h M gui/us_load_auc.h M gui/us_model_loader.h M gui/us_select_triples.h M gui/us_solution_gui.h M programs/us_2dsa/us_adv_analysis_2d.h M programs/us_2dsa/us_analysis_control_2d.h M programs/us_2dsa/us_plot_control_2d.h M programs/us_esigner_gmp/us_esigner_gmp.h M programs/us_fematch/us_advanced_fem.h M programs/us_fematch/us_fematch.h M programs/us_fematch/us_plot_control_fem.h M programs/us_mwl_species_fit/us_mwl_species_fit.h M programs/us_mwl_species_sim/us_mwl_species_sim.h M programs/us_mwl_spectra/us_mwl_spectra.h M programs/us_mwl_spectra/us_mwls_pltctl.h M programs/us_mwlr_viewer/us_mwlr_viewer.h M programs/us_pcsa/us_adv_analysis_pc.h M programs/us_pcsa/us_analysis_control_pc.h M programs/us_pcsa/us_pcsa.h M programs/us_pcsa/us_plot_control_pc.h M programs/us_pcsa/us_rpscan.h M programs/us_pseudo3d_combine/us_pseudo3d_combine.h M programs/us_pseudo3d_combine/us_remove_distros.h M programs/us_ramp/us_select_triples_ra.h M programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_vhw_combine/us_vhwc_pltctl.h Log Message: ----------- Update help file paths for improved documentation consistency and organization. Commit: 78e6d90c9756f558dd3c67e03ec447dbaa996a8a https://github.com/ehb54/ultrascan3/commit/78e6d90c9756f558dd3c67e03ec447dbaa996a8a Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .github/workflows/doc-build.yml Log Message: ----------- Let github action only build the documnetaion with the qthelp builder, because latex dependencies are currently missing Commit: 05eb1370b6158124bcafd398fef77466e66be0aa https://github.com/ehb54/ultrascan3/commit/05eb1370b6158124bcafd398fef77466e66be0aa Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h Log Message: ----------- Remove feature commit in wrong branch Commit: 3c1312a39ac562248315fb410c301c9d8eab79f5 https://github.com/ehb54/ultrascan3/commit/3c1312a39ac562248315fb410c301c9d8eab79f5 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h Log Message: ----------- Merge branch 'main' into lukas/manual_test/make Commit: 99fc3a66c861b6275cedd397bfd03e34e85d9435 https://github.com/ehb54/ultrascan3/commit/99fc3a66c861b6275cedd397bfd03e34e85d9435 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: A .github/workflows/sphinx-doc-build.yml Log Message: ----------- Add GitHub Actions workflow for Sphinx documentation build Commit: 5fa677c2afd3175fa29a37165561f4125a867c5d https://github.com/ehb54/ultrascan3/commit/5fa677c2afd3175fa29a37165561f4125a867c5d Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .github/workflows/sphinx-doc-build.yml Log Message: ----------- Refactor Sphinx GitHub Actions workflow: replace deprecated problem matcher usage, streamline build commands, and add error handling. Commit: b91a5ae2fecdc63970efdf031426e000eff8cc6e https://github.com/ehb54/ultrascan3/commit/b91a5ae2fecdc63970efdf031426e000eff8cc6e Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: A .github/sphinx-matcher.json Log Message: ----------- Add Sphinx problem matcher configuration for GitHub Actions Commit: 45da34200ce91a23a4f1f8d168e7a1ee612b03b5 https://github.com/ehb54/ultrascan3/commit/45da34200ce91a23a4f1f8d168e7a1ee612b03b5 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .github/workflows/sphinx-doc-build.yml Log Message: ----------- Annotate Sphinx build warnings in GitHub Actions workflow and update qthelp build step for improved error handling. Commit: f3750319ef93a4a4b5f925ffaa38acd1ebb8f6f5 https://github.com/ehb54/ultrascan3/commit/f3750319ef93a4a4b5f925ffaa38acd1ebb8f6f5 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .github/workflows/sphinx-doc-build.yml Log Message: ----------- Replace custom Sphinx warning annotation script with `sphinx-doc/github-problem-matcher` for streamlined GitHub Actions workflow. Commit: bc2b74fbb9b5698c8269f2d6b060ce420ab6697a https://github.com/ehb54/ultrascan3/commit/bc2b74fbb9b5698c8269f2d6b060ce420ab6697a Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: R .github/sphinx-matcher.json Log Message: ----------- Remove obsolete Sphinx problem matcher configuration from GitHub Actions. Commit: 715a3fd86ec9bdb692b3e1fa0ce393a86548c213 https://github.com/ehb54/ultrascan3/commit/715a3fd86ec9bdb692b3e1fa0ce393a86548c213 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/convert.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/export_legacy.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/second_moment.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst Log Message: ----------- Fix triplicates to triples Commit: f1b1aba77a1f2da432e6262d842221eb275d2dd0 https://github.com/ehb54/ultrascan3/commit/f1b1aba77a1f2da432e6262d842221eb275d2dd0 Author: HabGab Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst A doc/manual/source/_static/images/dmga-save.png A doc/manual/source/_static/images/dmga.png A doc/manual/source/_static/images/dmga_constr.png A doc/manual/source/_static/images/fe_dmga_adv.png M doc/manual/source/buoyancy_editor.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/convert.rst M doc/manual/source/dmga_init.rst M doc/manual/source/dmga_init_constr.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/experiment/range.rst M doc/manual/source/export_legacy.rst A doc/manual/source/fe_match/fe_dmga_adv.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/fe_match/index.rst M doc/manual/source/gmp/gmp_automation.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/index.rst M doc/manual/source/multi-wavelength/mwl_species_fit.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/rmsd_query.rst M doc/manual/source/run_details.rst M doc/manual/source/second_moment.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst M doc/manual/source/xpn_viewer.rst Log Message: ----------- update to latest Commit: ff98f3a480b918b42a59334bc0506f87b59b5a37 https://github.com/ehb54/ultrascan3/commit/ff98f3a480b918b42a59334bc0506f87b59b5a37 Author: HabGab Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M programs/us_integral/us_delete_models.h Log Message: ----------- first link change - integral Commit: 584135021b461a9f753c2ac63b2f37df4cd85b0b https://github.com/ehb54/ultrascan3/commit/584135021b461a9f753c2ac63b2f37df4cd85b0b Author: HabGab Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: A doc/manual/source/_static/images/delseltrip.png M doc/manual/source/common_dialogs.rst M programs/us_experiment/us_experiment_gui_optima.h M programs/us_integral/us_delete_models.h M programs/us_integral/us_integral.h Log Message: ----------- update us_experiment show.help Commit: 8e3da82ae6b7563f455e97718bb1f335a1c9bfcc https://github.com/ehb54/ultrascan3/commit/8e3da82ae6b7563f455e97718bb1f335a1c9bfcc Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-08 (Wed, 08 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/buffer/buffer_edit.rst M doc/manual/source/buffer/buffer_settings.rst M doc/manual/source/buoyancy_editor.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/convert.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/experiment/range.rst M doc/manual/source/export_legacy.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/gmp/gmp_automation.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/multi-wavelength/mwl_species_fit.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/rmsd_query.rst M doc/manual/source/run_details.rst M doc/manual/source/second_moment.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst M doc/manual/source/xpn_viewer.rst Log Message: ----------- Standardize terminology: replace "Triplicates" with "Triples" across documentation for clarity and consistency. Commit: 7128a07267ee0a0fd7913ea221c2cd891b7099a8 https://github.com/ehb54/ultrascan3/commit/7128a07267ee0a0fd7913ea221c2cd891b7099a8 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-08 (Wed, 08 Apr 2026) Changed paths: M test/utils/test_us_help_pages.cpp M test/utils/test_us_regex.cpp Log Message: ----------- Improve test failure messages: use `ADD_FAILURE_AT` for precise file/line annotation and enhance regex and help file error clarity Commit: 9cf710938424ec4c02179f22bb8da50b226085c6 https://github.com/ehb54/ultrascan3/commit/9cf710938424ec4c02179f22bb8da50b226085c6 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-08 (Wed, 08 Apr 2026) Changed paths: A .github/gtest-us.json M .github/workflows/unit-tests-v2.yml M .github/workflows/unit-tests.yml Log Message: ----------- Add GoogleTest problem matcher to GitHub Actions workflows for enhanced test failure annotation Commit: d849477c413c4de8c709970000b9beed563952aa 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https://github.com/ehb54/ultrascan3/commit/9a107befce5878fa969190700c2a2f6ef48ce068 Author: HabGab Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: A doc/manual/source/analysprof_general.rst M doc/manual/source/astfem_sim.rst M doc/manual/source/convert.rst A doc/manual/source/ramp_data.rst A doc/manual/source/us_administrator.rst M doc/manual/source/us_edit.rst M programs/us_analysis_profile/us_analysis_profile.h M programs/us_config/us_advanced.cpp M programs/us_edit/us_edit_scan.h M programs/us_edit/us_select_lambdas.h M programs/us_ramp/us_experiment_gui_ra.h Log Message: ----------- updates Commit: 6fe43510daa8d32555c611669eaa32ab11da07ff https://github.com/ehb54/ultrascan3/commit/6fe43510daa8d32555c611669eaa32ab11da07ff Author: HabGab Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: A doc/manual/source/_static/images/edit_exclude_scan.png A doc/manual/source/_static/images/edit_scan.png Log Message: ----------- images Commit: 290b3ed2436ce1c133fb54567579f869c3e2ea70 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programs/us_edit/us_exclude_profile.h M programs/us_fematch/us_adv_dmgamc.h M programs/us_globalequil/us_eqfit_control.h M programs/us_globalequil/us_eqmodel_control.h M programs/us_globalequil/us_model_adpars.h M programs/us_globalequil/us_model_select.h M programs/us_pcsa/us_mlplot.h Log Message: ----------- unit test Commit: c8515e182cb1cddab6d51258efd8a99f97c8c667 https://github.com/ehb54/ultrascan3/commit/c8515e182cb1cddab6d51258efd8a99f97c8c667 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: M .github/gtest-us.json Log Message: ----------- Fix matcher Commit: ff35eb4d37eed1d9a2fdd2200d69a00adfcdb41c https://github.com/ehb54/ultrascan3/commit/ff35eb4d37eed1d9a2fdd2200d69a00adfcdb41c Author: HabGab Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_analys.rst M doc/manual/source/2dsa/index.rst M doc/manual/source/analyte/analyte_edit.rst M doc/manual/source/analyte/analyte_select.rst M doc/manual/source/astfem_sim.rst M doc/manual/source/buoyancy_editor.rst M doc/manual/source/combine_models.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/components.rst M doc/manual/source/config.rst M doc/manual/source/convert.rst M doc/manual/source/dens_match.rst M doc/manual/source/dmga_init.rst M doc/manual/source/experiment/cells.rst M doc/manual/source/experiment/optics.rst M doc/manual/source/experiment/range.rst M doc/manual/source/experiment/submit.rst M doc/manual/source/export_legacy.rst M doc/manual/source/idist_combine.rst M doc/manual/source/manage_data.rst M doc/manual/source/model_editor.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_adv.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/pseudo3d.rst M doc/manual/source/rmsd_query.rst M doc/manual/source/rotor.rst M doc/manual/source/solutions/solution_edit.rst M doc/manual/source/solutions/solution_select.rst M doc/manual/source/start_page-int.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/vhw_enhanced.rst M programs/us_config/us_xpnhost_db.cpp M programs/us_pcsa/us_mrecs_loader.h Log Message: ----------- sphynx links Commit: 287fbcbd18bec2e702fabfb4298a69a0b62ee537 https://github.com/ehb54/ultrascan3/commit/287fbcbd18bec2e702fabfb4298a69a0b62ee537 Author: HabGab Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: A .github/gtest-us.json M .github/workflows/doc-build.yml A .github/workflows/sphinx-doc-build.yml M .github/workflows/unit-tests-v2.yml M .github/workflows/unit-tests.yml M .gitignore M doc/manual/CMakeLists.txt M doc/manual/Makefile M doc/manual/source/2dsa/2dsa_analys.rst M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/2dsa/index.rst A doc/manual/source/_static/images/delseltrip.png A 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programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_vhw_combine/us_vhwc_pltctl.h A test/utils/test_us_help_pages.cpp M test/utils/test_us_regex.cpp M utils/CMakeLists.txt M utils/us_buffer.h M utils/us_extern.h Log Message: ----------- Merge pull request #408 from ehb54/lukas/manual_test/make Enhance documentation build system and improve Unicode handling Commit: 07c763dfbb9bdc97eed6059ebd746fee626a8ea1 https://github.com/ehb54/ultrascan3/commit/07c763dfbb9bdc97eed6059ebd746fee626a8ea1 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-12 (Sun, 12 Apr 2026) Changed paths: A .github/gtest-us.json M .github/workflows/doc-build.yml A .github/workflows/sphinx-doc-build.yml M .github/workflows/unit-tests-v2.yml M .github/workflows/unit-tests.yml M .gitignore M doc/manual/CMakeLists.txt M doc/manual/Makefile M doc/manual/source/2dsa/2dsa_analys.rst M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/2dsa/index.rst A 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programs/us_ramp/us_select_triples_ra.h M programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_vhw_combine/us_vhwc_pltctl.h A test/utils/test_us_help_pages.cpp M test/utils/test_us_regex.cpp M utils/CMakeLists.txt M utils/us_buffer.h M utils/us_extern.h Log Message: ----------- Merge branch 'main' into lukas/us_fematch Compare: https://github.com/ehb54/ultrascan3/compare/560ad0332594...07c763dfbb9b To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Mon Apr 13 13:56:50 2026 From: noreply at github.com (HabGab) Date: Mon, 13 Apr 2026 12:56:50 -0700 Subject: [us-commits] [ehb54/ultrascan3] d2c998: triplicates Message-ID: Branch: refs/heads/haben/docs-crosslinking Home: https://github.com/ehb54/ultrascan3 Commit: d2c99821961553c3153b8d32337f97b7511bcf81 https://github.com/ehb54/ultrascan3/commit/d2c99821961553c3153b8d32337f97b7511bcf81 Author: HabGab Date: 2026-04-13 (Mon, 13 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_analys.rst M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/analyte/analyte_new.rst M doc/manual/source/analyte/analyte_settings.rst M doc/manual/source/buffer/buffer_edit.rst M doc/manual/source/buffer/buffer_new.rst M doc/manual/source/buffer/buffer_select.rst M doc/manual/source/buffer/buffer_settings.rst M doc/manual/source/buoyancy_editor.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/dmga_init_constr.rst M doc/manual/source/experiment/general.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/experiment/range.rst M doc/manual/source/experiment/rotor.rst M doc/manual/source/experiment/solutions.rst M doc/manual/source/experiment/speeds.rst M doc/manual/source/export_legacy.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/fe_match/index.rst M 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doc/manual/source/time_derivative.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_equiltime.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst M doc/manual/source/xpn_viewer.rst Log Message: ----------- triplicates To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Mon Apr 13 13:57:40 2026 From: noreply at github.com (HabGab) Date: Mon, 13 Apr 2026 12:57:40 -0700 Subject: [us-commits] [ehb54/ultrascan3] 6b12d7: minor missplacing Message-ID: Branch: refs/heads/haben/docs-crosslinking Home: https://github.com/ehb54/ultrascan3 Commit: 6b12d783265172c421a37e224b8adad3f695e245 https://github.com/ehb54/ultrascan3/commit/6b12d783265172c421a37e224b8adad3f695e245 Author: HabGab Date: 2026-04-13 (Mon, 13 Apr 2026) Changed paths: M 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doc/manual/source/2dsa/2dsa_main.rst A doc/manual/source/__pycache__/auto_index.cpython-39.pyc A doc/manual/source/_static/UltraScanIII.pdf M doc/manual/source/buoyancy_editor.rst M doc/manual/source/grid_editor.rst M doc/manual/source/idist_combine.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/solutions/index.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-new.rst M doc/manual/source/vhw_combine.rst Log Message: ----------- ref and doc updates Compare: https://github.com/ehb54/ultrascan3/compare/6b12d7832651...999f5967cfac To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Mon Apr 13 15:56:51 2026 From: noreply at github.com (HabGab) Date: Mon, 13 Apr 2026 14:56:51 -0700 Subject: [us-commits] [ehb54/ultrascan3] 5442f4: referencing Message-ID: Branch: refs/heads/haben/docs-crosslinking Home: https://github.com/ehb54/ultrascan3 Commit: 5442f4062fa7bdbd225d10d4108a9913de662afe https://github.com/ehb54/ultrascan3/commit/5442f4062fa7bdbd225d10d4108a9913de662afe Author: Haben Gabir Date: 2026-04-13 (Mon, 13 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/2dsa/index.rst A doc/manual/source/_static/images/load_us3.png M doc/manual/source/analyte/analyte_new.rst M doc/manual/source/analyte/analyte_settings.rst M doc/manual/source/astfem_sim.rst M doc/manual/source/buffer/buffer_edit.rst M doc/manual/source/buoyancy_editor.rst M doc/manual/source/combine_models.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/convert.rst M doc/manual/source/experiment/general.rst M doc/manual/source/experiment/rotor.rst M doc/manual/source/experiment/solutions.rst M doc/manual/source/experiment/speeds.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/index.rst M doc/manual/source/ga_initialize.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/index.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/pseudo3d.rst R doc/manual/source/rotor.rst M doc/manual/source/rotor_calibration.rst A doc/manual/source/rotors.rst M doc/manual/source/simparams.rst M doc/manual/source/solutions/solution_edit.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_equiltime.rst M doc/manual/source/vhw_enhanced.rst Log Message: ----------- referencing To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Mon Apr 13 16:17:50 2026 From: noreply at github.com (HabGab) Date: Mon, 13 Apr 2026 15:17:50 -0700 Subject: [us-commits] [ehb54/ultrascan3] 5d9407: referencing update Message-ID: Branch: refs/heads/haben/docs-crosslinking Home: https://github.com/ehb54/ultrascan3 Commit: 5d940737536ba92999909c398bc2c791d46ffd4d https://github.com/ehb54/ultrascan3/commit/5d940737536ba92999909c398bc2c791d46ffd4d Author: Haben Gabir Date: 2026-04-13 (Mon, 13 Apr 2026) Changed paths: M doc/manual/Makefile M doc/manual/source/common_dialogs.rst M doc/manual/source/convert.rst M doc/manual/source/fe_match/index.rst M doc/manual/source/start_page-new.rst M doc/manual/source/start_page.rst Log Message: ----------- referencing update To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Mon Apr 13 16:46:19 2026 From: noreply at github.com (HabGab) Date: Mon, 13 Apr 2026 15:46:19 -0700 Subject: [us-commits] [ehb54/ultrascan3] 792ea0: reference update 2 Message-ID: Branch: refs/heads/haben/docs-crosslinking Home: https://github.com/ehb54/ultrascan3 Commit: 792ea02cbd0b900f1898086c35fa6b3c11e54201 https://github.com/ehb54/ultrascan3/commit/792ea02cbd0b900f1898086c35fa6b3c11e54201 Author: Haben Gabir Date: 2026-04-13 (Mon, 13 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/_static/js/sphinx_highlight.js M doc/manual/source/analyte/analyte_edit.rst M doc/manual/source/buffer/buffer_edit.rst M doc/manual/source/buffer/buffer_new.rst M doc/manual/source/buffer/buffer_settings.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/config.rst M doc/manual/source/dmga_init_constr.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/experiment/range.rst M doc/manual/source/experiment/rotor.rst M doc/manual/source/experiment/solutions.rst M doc/manual/source/experiment/speeds.rst M doc/manual/source/export_legacy.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/gmp/gmp_automation.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/grid_editor.rst M doc/manual/source/multi-wavelength/index.rst M doc/manual/source/multi-wavelength/mwl_species_fit.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/multi-wavelength/mwl_spectra.rst M doc/manual/source/pcsa/pcsa_analys.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/rmsd_query.rst M doc/manual/source/run_details.rst M doc/manual/source/solutions/solution_new.rst M doc/manual/source/solutions/solution_settings.rst M doc/manual/source/start_page-int.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst M doc/manual/source/xpn_viewer.rst Log Message: ----------- reference update 2 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Tue Apr 14 17:12:30 2026 From: noreply at github.com (HabGab) Date: Tue, 14 Apr 2026 16:12:30 -0700 Subject: [us-commits] [ehb54/ultrascan3] 54a049: sphinx-build -M linkcheck /source /build -q --keep... Message-ID: Branch: refs/heads/haben/docs-crosslinking Home: https://github.com/ehb54/ultrascan3 Commit: 54a049bf6cfd4facaa834f4e91979253d3aa6b86 https://github.com/ehb54/ultrascan3/commit/54a049bf6cfd4facaa834f4e91979253d3aa6b86 Author: Haben Gabir Date: 2026-04-14 (Tue, 14 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_analys.rst M doc/manual/source/2dsa/2dsa_main.rst A doc/manual/source/_static/images/cmenu_help.png M doc/manual/source/analyte/analyte_edit.rst M doc/manual/source/analyte/analyte_new.rst M doc/manual/source/buffer/buffer_edit.rst M doc/manual/source/buffer/buffer_new.rst M doc/manual/source/buffer/buffer_select.rst M doc/manual/source/buffer/buffer_settings.rst M doc/manual/source/combine_models.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/dmga_init.rst M doc/manual/source/experiment/solutions.rst M doc/manual/source/export_legacy.rst M doc/manual/source/fe_match/fe_dmga_adv.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/ga_initialize.rst M doc/manual/source/idist_combine.rst M doc/manual/source/manage_data.rst M doc/manual/source/multi-wavelength/index.rst M doc/manual/source/multi-wavelength/mwl_species_fit.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_analys.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/rmsd_query.rst M doc/manual/source/solutions/solution_new.rst M doc/manual/source/start_page-int.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/vhw_enhanced.rst Log Message: ----------- sphinx-build -M linkcheck /source /build -q --keep-going + DMGA protocol To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Tue Apr 14 17:18:07 2026 From: noreply at github.com (HabGab) Date: Tue, 14 Apr 2026 16:18:07 -0700 Subject: [us-commits] [ehb54/ultrascan3] 5ec1de: manual name change Message-ID: Branch: refs/heads/haben/docs-crosslinking Home: https://github.com/ehb54/ultrascan3 Commit: 5ec1de61dba0f60ca68a98e66e6f8098e0d70384 https://github.com/ehb54/ultrascan3/commit/5ec1de61dba0f60ca68a98e66e6f8098e0d70384 Author: HabGab Date: 2026-04-14 (Tue, 14 Apr 2026) Changed paths: M gui/us_abstractrotor_gui.h M gui/us_rotor_gui.h Log Message: ----------- manual name change To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Tue Apr 14 20:11:20 2026 From: noreply at github.com (HabGab) Date: Tue, 14 Apr 2026 19:11:20 -0700 Subject: [us-commits] [ehb54/ultrascan3] 73e408: minor updates Message-ID: Branch: refs/heads/haben/docs-crosslinking Home: https://github.com/ehb54/ultrascan3 Commit: 73e408bbda42ba6961f01111ffb11b59c8976fce https://github.com/ehb54/ultrascan3/commit/73e408bbda42ba6961f01111ffb11b59c8976fce Author: Haben Gabir Date: 2026-04-14 (Tue, 14 Apr 2026) Changed paths: M doc/manual/source/analysprof_general.rst M doc/manual/source/index.rst M doc/manual/source/us_administrator.rst M doc/manual/source/us_investigator.rst M doc/manual/source/us_project.rst Log Message: ----------- minor updates To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Tue Apr 14 20:17:20 2026 From: noreply at github.com (HabGab) Date: Tue, 14 Apr 2026 19:17:20 -0700 Subject: [us-commits] [ehb54/ultrascan3] aadeec: minor updates in Index Message-ID: Branch: refs/heads/haben/docs-crosslinking Home: https://github.com/ehb54/ultrascan3 Commit: aadeecb1340fbe3c58273b592171ad822dbd05dd https://github.com/ehb54/ultrascan3/commit/aadeecb1340fbe3c58273b592171ad822dbd05dd Author: Haben Gabir Date: 2026-04-14 (Tue, 14 Apr 2026) Changed paths: M doc/manual/source/index.rst Log Message: ----------- minor updates in Index To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Tue Apr 14 20:30:14 2026 From: noreply at github.com (HabGab) Date: Tue, 14 Apr 2026 19:30:14 -0700 Subject: [us-commits] [ehb54/ultrascan3] 26b3af: These MINOR changes are killing me Message-ID: Branch: refs/heads/haben/docs-crosslinking Home: https://github.com/ehb54/ultrascan3 Commit: 26b3afbb4f6320ad269fb86433af8187d3a79256 https://github.com/ehb54/ultrascan3/commit/26b3afbb4f6320ad269fb86433af8187d3a79256 Author: Haben Gabir Date: 2026-04-14 (Tue, 14 Apr 2026) Changed paths: A doc/manual/source/_static/images/reporter_comrep.png M doc/manual/source/index.rst M doc/manual/source/reporter.rst Log Message: ----------- These MINOR changes are killing me To unsubscribe from these emails, change your notification settings at 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Message-ID: Branch: refs/heads/main Home: https://github.com/ehb54/ultrascan3 Commit: 29678f933d80ecac003838e4bde2c37a65512482 https://github.com/ehb54/ultrascan3/commit/29678f933d80ecac003838e4bde2c37a65512482 Author: alexsav815 Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: M utils/us_run_protocol.cpp Log Message: ----------- GMP -- additional check for the protocol internals equality before submitting GMP run: check for operator (and revs & approvers)... Commit: abf6f6f3682a1676d7d1e8f7dd0f02419fb1954f https://github.com/ehb54/ultrascan3/commit/abf6f6f3682a1676d7d1e8f7dd0f02419fb1954f Author: alexsav815 Date: 2026-04-15 (Wed, 15 Apr 2026) Changed paths: M utils/us_run_protocol.cpp Log Message: ----------- Merge pull request #409 from ehb54/alexey-dev-issue814 GMP -- additional check for the protocol internals equality before submitting GMP runs: operator(s) Compare: https://github.com/ehb54/ultrascan3/compare/287fbcbd18be...abf6f6f3682a To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Thu Apr 16 08:50:53 2026 From: noreply at github.com (Lukas Dobler) Date: Thu, 16 Apr 2026 07:50:53 -0700 Subject: [us-commits] [ehb54/ultrascan3] 79bb84: Ensure zoom check considers spectrogram items in `... Message-ID: Branch: refs/heads/lukas/us_pseudo3d_combine Home: https://github.com/ehb54/ultrascan3 Commit: 79bb847a03d6a66112ac96beede10610bbba2246 https://github.com/ehb54/ultrascan3/commit/79bb847a03d6a66112ac96beede10610bbba2246 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-16 (Thu, 16 Apr 2026) Changed paths: M gui/us_plot.cpp Log Message: ----------- Ensure zoom check considers spectrogram items in `us_plot.cpp` Commit: 0d3c4779cd3d7e85fc5bc4ad7e449a6afcaf99ff https://github.com/ehb54/ultrascan3/commit/0d3c4779cd3d7e85fc5bc4ad7e449a6afcaf99ff Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-16 (Thu, 16 Apr 2026) Changed paths: M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp Log Message: ----------- Refactor signal-slot connections in `us_pseudo3d_combine.cpp` to use modern `&QButtonGroup::idReleased` syntax. 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Message-ID: Branch: refs/heads/lukas/us_pseudo3d_combine Home: https://github.com/ehb54/ultrascan3 Commit: e3131079c98204bcde4f43e59bc6114c81d4d6bd https://github.com/ehb54/ultrascan3/commit/e3131079c98204bcde4f43e59bc6114c81d4d6bd Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-16 (Thu, 16 Apr 2026) Changed paths: M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp Log Message: ----------- Refactor signal-slot connections in `us_pseudo3d_combine.cpp` to use modern syntax for improved readability and maintainability. 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Message-ID: Branch: refs/heads/alexey-dev-issue819 Home: https://github.com/ehb54/ultrascan3 Commit: c85594c8e6e1edab8b7adae963da46ffe5913fc6 https://github.com/ehb54/ultrascan3/commit/c85594c8e6e1edab8b7adae963da46ffe5913fc6 Author: alexsav815 Date: 2026-04-16 (Thu, 16 Apr 2026) Changed paths: M gui/us_model_gui.cpp M gui/us_model_gui.h Log Message: ----------- Model Selector -- allow Accept for GMP-generated models... To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Fri Apr 17 02:39:06 2026 From: noreply at github.com (Lukas Dobler) Date: Fri, 17 Apr 2026 01:39:06 -0700 Subject: [us-commits] [ehb54/ultrascan3] Message-ID: Branch: refs/heads/lukas/somo-cmake Home: https://github.com/ehb54/ultrascan3 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Mon Apr 20 10:49:49 2026 From: noreply at github.com (HabGab) Date: Mon, 20 Apr 2026 09:49:49 -0700 Subject: [us-commits] [ehb54/ultrascan3] 6bcf83: us_buoyancy introduction, Us_spectrum introduction... Message-ID: Branch: refs/heads/haben/docs-crosslinking Home: https://github.com/ehb54/ultrascan3 Commit: 6bcf83da27c47886d434f95cb5c8b5b393efcc79 https://github.com/ehb54/ultrascan3/commit/6bcf83da27c47886d434f95cb5c8b5b393efcc79 Author: Haben Gabir Date: 2026-04-20 (Mon, 20 Apr 2026) Changed paths: A doc/manual/source/_static/images/us_spectrum-0-upded.png M doc/manual/source/_static/images/us_spectrum-1.png M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_spectrum.rst Log Message: ----------- us_buoyancy introduction, Us_spectrum introduction,images and application updated. To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Mon Apr 20 11:06:09 2026 From: noreply at github.com (HabGab) Date: Mon, 20 Apr 2026 10:06:09 -0700 Subject: [us-commits] [ehb54/ultrascan3] 29678f: GMP -- additional check for the protocol internal... Message-ID: Branch: refs/heads/haben/docs-crosslinking Home: https://github.com/ehb54/ultrascan3 Commit: 29678f933d80ecac003838e4bde2c37a65512482 https://github.com/ehb54/ultrascan3/commit/29678f933d80ecac003838e4bde2c37a65512482 Author: alexsav815 Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: M utils/us_run_protocol.cpp Log Message: ----------- GMP -- additional check for the protocol internals equality before submitting GMP run: check for operator (and revs & approvers)... Commit: abf6f6f3682a1676d7d1e8f7dd0f02419fb1954f https://github.com/ehb54/ultrascan3/commit/abf6f6f3682a1676d7d1e8f7dd0f02419fb1954f Author: alexsav815 Date: 2026-04-15 (Wed, 15 Apr 2026) Changed paths: M utils/us_run_protocol.cpp Log Message: ----------- Merge pull request #409 from ehb54/alexey-dev-issue814 GMP -- additional check for the protocol internals equality before submitting GMP runs: operator(s) Commit: b5159ec368c6454947e70949aaffbdde6b41c221 https://github.com/ehb54/ultrascan3/commit/b5159ec368c6454947e70949aaffbdde6b41c221 Author: Haben Gabir Date: 2026-04-20 (Mon, 20 Apr 2026) Changed paths: M utils/us_run_protocol.cpp Log Message: ----------- Merge branch 'main' into haben/docs-crosslinking Compare: https://github.com/ehb54/ultrascan3/compare/6bcf83da27c4...b5159ec368c6 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Mon Apr 20 20:41:41 2026 From: noreply at 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Date: 2026-04-13 (Mon, 13 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_analys.rst M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/analyte/analyte_new.rst M doc/manual/source/analyte/analyte_settings.rst M doc/manual/source/buffer/buffer_edit.rst M doc/manual/source/buffer/buffer_new.rst M doc/manual/source/buffer/buffer_select.rst M doc/manual/source/buffer/buffer_settings.rst M doc/manual/source/buoyancy_editor.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/dmga_init_constr.rst M doc/manual/source/experiment/general.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/experiment/range.rst M doc/manual/source/experiment/rotor.rst M doc/manual/source/experiment/solutions.rst M doc/manual/source/experiment/speeds.rst M doc/manual/source/export_legacy.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/fe_match/index.rst M 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Compare: https://github.com/ehb54/ultrascan3/compare/abf6f6f3682a...0d2312349736 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Tue Apr 21 08:54:18 2026 From: noreply at github.com (HabGab) Date: Tue, 21 Apr 2026 07:54:18 -0700 Subject: [us-commits] [ehb54/ultrascan3] 476382: replaced old image in doc Message-ID: Branch: refs/heads/haben/docs-crosslinking Home: https://github.com/ehb54/ultrascan3 Commit: 47638222ab16a5ea91b3b1574d03c5038374b2a4 https://github.com/ehb54/ultrascan3/commit/47638222ab16a5ea91b3b1574d03c5038374b2a4 Author: Haben Gabir Date: 2026-04-21 (Tue, 21 Apr 2026) Changed paths: M doc/manual/source/start_page-mw.rst Log Message: ----------- replaced old image in doc To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Tue Apr 21 11:15:23 2026 From: noreply at github.com (HabGab) Date: Tue, 21 Apr 2026 10:15:23 -0700 Subject: [us-commits] [ehb54/ultrascan3] 0d2312: Merge pull request #412 from ehb54/haben/docs-cros... Message-ID: Branch: refs/heads/haben/docs-crosslinking Home: https://github.com/ehb54/ultrascan3 Commit: 0d231234973612a639bab8cf3fc26fb81c88717f https://github.com/ehb54/ultrascan3/commit/0d231234973612a639bab8cf3fc26fb81c88717f Author: HabGab Date: 2026-04-20 (Mon, 20 Apr 2026) Changed paths: M doc/manual/Makefile M doc/manual/source/2dsa/2dsa_analys.rst M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/2dsa/index.rst A doc/manual/source/__pycache__/auto_index.cpython-39.pyc A doc/manual/source/_static/UltraScanIII.pdf A doc/manual/source/_static/images/cmenu_help.png A doc/manual/source/_static/images/load_us3.png A doc/manual/source/_static/images/reporter_comrep.png A doc/manual/source/_static/images/us_spectrum-0-upded.png M doc/manual/source/_static/images/us_spectrum-1.png M doc/manual/source/_static/js/sphinx_highlight.js M doc/manual/source/analysprof_general.rst M doc/manual/source/analyte/analyte_edit.rst M doc/manual/source/analyte/analyte_new.rst M doc/manual/source/analyte/analyte_settings.rst M doc/manual/source/astfem_sim.rst M doc/manual/source/buffer/buffer_edit.rst M doc/manual/source/buffer/buffer_new.rst M doc/manual/source/buffer/buffer_select.rst M doc/manual/source/buffer/buffer_settings.rst M doc/manual/source/buoyancy_editor.rst M doc/manual/source/combine_models.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/config.rst M doc/manual/source/convert.rst M doc/manual/source/dmga_init.rst M doc/manual/source/dmga_init_constr.rst M doc/manual/source/experiment/general.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/experiment/range.rst M doc/manual/source/experiment/rotor.rst M doc/manual/source/experiment/solutions.rst M doc/manual/source/experiment/speeds.rst M doc/manual/source/export_legacy.rst M doc/manual/source/fe_match/fe_dmga_adv.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/fe_match/index.rst M doc/manual/source/ga_initialize.rst M doc/manual/source/gmp/gmp_automation.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/grid_editor.rst M doc/manual/source/idist_combine.rst M doc/manual/source/index.rst M doc/manual/source/manage_data.rst M doc/manual/source/multi-wavelength/index.rst M doc/manual/source/multi-wavelength/mwl_species_fit.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/multi-wavelength/mwl_spectra.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_analys.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/pseudo3d.rst M doc/manual/source/reporter.rst M doc/manual/source/rmsd_query.rst R doc/manual/source/rotor.rst M doc/manual/source/rotor_calibration.rst A doc/manual/source/rotors.rst M doc/manual/source/run_details.rst M doc/manual/source/second_moment.rst M doc/manual/source/simparams.rst M doc/manual/source/solutions/index.rst M doc/manual/source/solutions/solution_edit.rst M doc/manual/source/solutions/solution_new.rst M doc/manual/source/solutions/solution_settings.rst M doc/manual/source/start_page-int.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-new.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/us_administrator.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_equiltime.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/us_investigator.rst M doc/manual/source/us_project.rst M doc/manual/source/us_spectrum.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst M doc/manual/source/xpn_viewer.rst M gui/us_abstractrotor_gui.h M gui/us_rotor_gui.h Log Message: ----------- Merge pull request #412 from ehb54/haben/docs-crosslinking Document cross linking, manual help buttons and new pages added. Commit: 1fece8e1783a00b7b4b2d53c0d3fb24784b20678 https://github.com/ehb54/ultrascan3/commit/1fece8e1783a00b7b4b2d53c0d3fb24784b20678 Author: HabGab Date: 2026-04-21 (Tue, 21 Apr 2026) Changed paths: Log Message: ----------- Merge branch 'main' into haben/docs-crosslinking Compare: https://github.com/ehb54/ultrascan3/compare/47638222ab16...1fece8e1783a To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Tue Apr 21 11:53:41 2026 From: noreply at github.com (HabGab) Date: Tue, 21 Apr 2026 10:53:41 -0700 Subject: [us-commits] [ehb54/ultrascan3] 476382: replaced old image in doc Message-ID: Branch: refs/heads/main Home: https://github.com/ehb54/ultrascan3 Commit: 47638222ab16a5ea91b3b1574d03c5038374b2a4 https://github.com/ehb54/ultrascan3/commit/47638222ab16a5ea91b3b1574d03c5038374b2a4 Author: Haben Gabir Date: 2026-04-21 (Tue, 21 Apr 2026) Changed paths: M doc/manual/source/start_page-mw.rst Log Message: ----------- replaced old image in doc Commit: 1fece8e1783a00b7b4b2d53c0d3fb24784b20678 https://github.com/ehb54/ultrascan3/commit/1fece8e1783a00b7b4b2d53c0d3fb24784b20678 Author: HabGab Date: 2026-04-21 (Tue, 21 Apr 2026) Changed paths: Log Message: ----------- Merge branch 'main' into haben/docs-crosslinking Commit: c0dbe2538c5177518ec31c51efdbe5540a5df70d https://github.com/ehb54/ultrascan3/commit/c0dbe2538c5177518ec31c51efdbe5540a5df70d Author: HabGab Date: 2026-04-21 (Tue, 21 Apr 2026) Changed paths: M doc/manual/source/start_page-mw.rst Log Message: ----------- Merge pull request #415 from ehb54/haben/docs-crosslinking replaced old image in doc Compare: https://github.com/ehb54/ultrascan3/compare/0d2312349736...c0dbe2538c51 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Tue Apr 21 16:22:10 2026 From: noreply at github.com (HabGab) Date: Tue, 21 Apr 2026 15:22:10 -0700 Subject: [us-commits] [ehb54/ultrascan3] c0dbe2: Merge pull request #415 from ehb54/haben/docs-cros... Message-ID: Branch: refs/heads/haben/docs-crosslinking Home: https://github.com/ehb54/ultrascan3 Commit: c0dbe2538c5177518ec31c51efdbe5540a5df70d https://github.com/ehb54/ultrascan3/commit/c0dbe2538c5177518ec31c51efdbe5540a5df70d Author: HabGab Date: 2026-04-21 (Tue, 21 Apr 2026) Changed paths: M doc/manual/source/start_page-mw.rst Log Message: ----------- Merge pull request #415 from ehb54/haben/docs-crosslinking replaced old image in doc To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Wed Apr 22 00:06:19 2026 From: noreply at github.com (Lukas Dobler) Date: Tue, 21 Apr 2026 23:06:19 -0700 Subject: [us-commits] [ehb54/ultrascan3] Message-ID: Branch: refs/heads/lukas/manual_versioning Home: https://github.com/ehb54/ultrascan3 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Wed Apr 22 00:07:08 2026 From: noreply at github.com (Lukas Dobler) Date: Tue, 21 Apr 2026 23:07:08 -0700 Subject: [us-commits] [ehb54/ultrascan3] 77adb0: check new branch Message-ID: Branch: refs/heads/lukas/us_pseudo3d_combine Home: https://github.com/ehb54/ultrascan3 Commit: 77adb01c3a9c4133da796314b1007c031f6dd089 https://github.com/ehb54/ultrascan3/commit/77adb01c3a9c4133da796314b1007c031f6dd089 Author: Haben Gabir Date: 2026-04-10 (Fri, 10 Apr 2026) Changed paths: M doc/manual/source/config.rst Log Message: ----------- check new branch Commit: 0a0e0eca8a8da8aa4db25e74431e3d89b5808edb https://github.com/ehb54/ultrascan3/commit/0a0e0eca8a8da8aa4db25e74431e3d89b5808edb Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-10 (Fri, 10 Apr 2026) Changed paths: Log Message: ----------- Merge pull request #410 from ehb54/main Merge pull request #408 from ehb54/lukas/manual_test/make Commit: d2c99821961553c3153b8d32337f97b7511bcf81 https://github.com/ehb54/ultrascan3/commit/d2c99821961553c3153b8d32337f97b7511bcf81 Author: HabGab Date: 2026-04-13 (Mon, 13 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_analys.rst M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/analyte/analyte_new.rst M doc/manual/source/analyte/analyte_settings.rst M doc/manual/source/buffer/buffer_edit.rst M doc/manual/source/buffer/buffer_new.rst M doc/manual/source/buffer/buffer_select.rst M doc/manual/source/buffer/buffer_settings.rst M doc/manual/source/buoyancy_editor.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/dmga_init_constr.rst M doc/manual/source/experiment/general.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/experiment/range.rst M doc/manual/source/experiment/rotor.rst M doc/manual/source/experiment/solutions.rst M doc/manual/source/experiment/speeds.rst M doc/manual/source/export_legacy.rst M 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https://github.com/ehb54/ultrascan3/commit/73e408bbda42ba6961f01111ffb11b59c8976fce Author: Haben Gabir Date: 2026-04-14 (Tue, 14 Apr 2026) Changed paths: M doc/manual/source/analysprof_general.rst M doc/manual/source/index.rst M doc/manual/source/us_administrator.rst M doc/manual/source/us_investigator.rst M doc/manual/source/us_project.rst Log Message: ----------- minor updates Commit: aadeecb1340fbe3c58273b592171ad822dbd05dd https://github.com/ehb54/ultrascan3/commit/aadeecb1340fbe3c58273b592171ad822dbd05dd Author: Haben Gabir Date: 2026-04-14 (Tue, 14 Apr 2026) Changed paths: M doc/manual/source/index.rst Log Message: ----------- minor updates in Index Commit: 26b3afbb4f6320ad269fb86433af8187d3a79256 https://github.com/ehb54/ultrascan3/commit/26b3afbb4f6320ad269fb86433af8187d3a79256 Author: Haben Gabir Date: 2026-04-14 (Tue, 14 Apr 2026) Changed paths: A doc/manual/source/_static/images/reporter_comrep.png M doc/manual/source/index.rst M doc/manual/source/reporter.rst Log Message: ----------- These MINOR changes are killing me Commit: c35c8a4a2d552e064e5d40205f75deef685d0d6e https://github.com/ehb54/ultrascan3/commit/c35c8a4a2d552e064e5d40205f75deef685d0d6e Author: Haben Gabir Date: 2026-04-14 (Tue, 14 Apr 2026) Changed paths: M doc/manual/source/fe_match/index.rst Log Message: ----------- Minoooor Commit: 6bcf83da27c47886d434f95cb5c8b5b393efcc79 https://github.com/ehb54/ultrascan3/commit/6bcf83da27c47886d434f95cb5c8b5b393efcc79 Author: Haben Gabir Date: 2026-04-20 (Mon, 20 Apr 2026) Changed paths: A doc/manual/source/_static/images/us_spectrum-0-upded.png M doc/manual/source/_static/images/us_spectrum-1.png M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_spectrum.rst Log Message: ----------- us_buoyancy introduction, Us_spectrum introduction,images and application updated. Commit: b5159ec368c6454947e70949aaffbdde6b41c221 https://github.com/ehb54/ultrascan3/commit/b5159ec368c6454947e70949aaffbdde6b41c221 Author: Haben Gabir Date: 2026-04-20 (Mon, 20 Apr 2026) Changed paths: M utils/us_run_protocol.cpp Log Message: ----------- Merge branch 'main' into haben/docs-crosslinking Commit: 0d231234973612a639bab8cf3fc26fb81c88717f https://github.com/ehb54/ultrascan3/commit/0d231234973612a639bab8cf3fc26fb81c88717f Author: HabGab Date: 2026-04-20 (Mon, 20 Apr 2026) Changed paths: M doc/manual/Makefile M doc/manual/source/2dsa/2dsa_analys.rst M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/2dsa/index.rst A doc/manual/source/__pycache__/auto_index.cpython-39.pyc A doc/manual/source/_static/UltraScanIII.pdf A doc/manual/source/_static/images/cmenu_help.png A doc/manual/source/_static/images/load_us3.png A doc/manual/source/_static/images/reporter_comrep.png A doc/manual/source/_static/images/us_spectrum-0-upded.png M doc/manual/source/_static/images/us_spectrum-1.png M doc/manual/source/_static/js/sphinx_highlight.js M doc/manual/source/analysprof_general.rst M doc/manual/source/analyte/analyte_edit.rst M doc/manual/source/analyte/analyte_new.rst M doc/manual/source/analyte/analyte_settings.rst M doc/manual/source/astfem_sim.rst M doc/manual/source/buffer/buffer_edit.rst M doc/manual/source/buffer/buffer_new.rst M doc/manual/source/buffer/buffer_select.rst M doc/manual/source/buffer/buffer_settings.rst M doc/manual/source/buoyancy_editor.rst M doc/manual/source/combine_models.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/config.rst M doc/manual/source/convert.rst M doc/manual/source/dmga_init.rst M doc/manual/source/dmga_init_constr.rst M doc/manual/source/experiment/general.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/experiment/range.rst M doc/manual/source/experiment/rotor.rst M doc/manual/source/experiment/solutions.rst M doc/manual/source/experiment/speeds.rst M doc/manual/source/export_legacy.rst M doc/manual/source/fe_match/fe_dmga_adv.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/fe_match/index.rst M doc/manual/source/ga_initialize.rst M doc/manual/source/gmp/gmp_automation.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/grid_editor.rst M doc/manual/source/idist_combine.rst M doc/manual/source/index.rst M doc/manual/source/manage_data.rst M doc/manual/source/multi-wavelength/index.rst M doc/manual/source/multi-wavelength/mwl_species_fit.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/multi-wavelength/mwl_spectra.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_analys.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/pseudo3d.rst M doc/manual/source/reporter.rst M doc/manual/source/rmsd_query.rst R doc/manual/source/rotor.rst M doc/manual/source/rotor_calibration.rst A doc/manual/source/rotors.rst M doc/manual/source/run_details.rst M doc/manual/source/second_moment.rst M doc/manual/source/simparams.rst M doc/manual/source/solutions/index.rst M doc/manual/source/solutions/solution_edit.rst M doc/manual/source/solutions/solution_new.rst M doc/manual/source/solutions/solution_settings.rst M doc/manual/source/start_page-int.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-new.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/us_administrator.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_equiltime.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/us_investigator.rst M doc/manual/source/us_project.rst M doc/manual/source/us_spectrum.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst M doc/manual/source/xpn_viewer.rst M gui/us_abstractrotor_gui.h M gui/us_rotor_gui.h Log Message: ----------- Merge pull request #412 from ehb54/haben/docs-crosslinking Document cross linking, manual help buttons and new pages added. Commit: 47638222ab16a5ea91b3b1574d03c5038374b2a4 https://github.com/ehb54/ultrascan3/commit/47638222ab16a5ea91b3b1574d03c5038374b2a4 Author: Haben Gabir Date: 2026-04-21 (Tue, 21 Apr 2026) Changed paths: M doc/manual/source/start_page-mw.rst Log Message: ----------- replaced old image in doc Commit: 1fece8e1783a00b7b4b2d53c0d3fb24784b20678 https://github.com/ehb54/ultrascan3/commit/1fece8e1783a00b7b4b2d53c0d3fb24784b20678 Author: HabGab Date: 2026-04-21 (Tue, 21 Apr 2026) Changed paths: Log Message: ----------- Merge branch 'main' into haben/docs-crosslinking Commit: c0dbe2538c5177518ec31c51efdbe5540a5df70d https://github.com/ehb54/ultrascan3/commit/c0dbe2538c5177518ec31c51efdbe5540a5df70d Author: HabGab Date: 2026-04-21 (Tue, 21 Apr 2026) Changed paths: M doc/manual/source/start_page-mw.rst Log Message: ----------- Merge pull request #415 from ehb54/haben/docs-crosslinking replaced old image in doc Commit: 0d1643338fa17f6186a4ad8679ba4cccf89fd394 https://github.com/ehb54/ultrascan3/commit/0d1643338fa17f6186a4ad8679ba4cccf89fd394 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/Makefile M doc/manual/source/2dsa/2dsa_analys.rst M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/2dsa/index.rst A doc/manual/source/__pycache__/auto_index.cpython-39.pyc A doc/manual/source/_static/UltraScanIII.pdf A doc/manual/source/_static/images/cmenu_help.png A doc/manual/source/_static/images/load_us3.png A doc/manual/source/_static/images/reporter_comrep.png A doc/manual/source/_static/images/us_spectrum-0-upded.png M doc/manual/source/_static/images/us_spectrum-1.png M doc/manual/source/_static/js/sphinx_highlight.js M doc/manual/source/analysprof_general.rst M doc/manual/source/analyte/analyte_edit.rst M doc/manual/source/analyte/analyte_new.rst M doc/manual/source/analyte/analyte_settings.rst M doc/manual/source/astfem_sim.rst M doc/manual/source/buffer/buffer_edit.rst M doc/manual/source/buffer/buffer_new.rst M doc/manual/source/buffer/buffer_select.rst M doc/manual/source/buffer/buffer_settings.rst M doc/manual/source/buoyancy_editor.rst M doc/manual/source/combine_models.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/config.rst M doc/manual/source/convert.rst M doc/manual/source/dmga_init.rst M doc/manual/source/dmga_init_constr.rst M doc/manual/source/experiment/general.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/experiment/range.rst M doc/manual/source/experiment/rotor.rst M doc/manual/source/experiment/solutions.rst M doc/manual/source/experiment/speeds.rst M doc/manual/source/export_legacy.rst M doc/manual/source/fe_match/fe_dmga_adv.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/fe_match/index.rst M doc/manual/source/ga_initialize.rst M doc/manual/source/gmp/gmp_automation.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/grid_editor.rst M doc/manual/source/idist_combine.rst M doc/manual/source/index.rst M doc/manual/source/manage_data.rst M doc/manual/source/multi-wavelength/index.rst M doc/manual/source/multi-wavelength/mwl_species_fit.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/multi-wavelength/mwl_spectra.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_analys.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/pseudo3d.rst M doc/manual/source/reporter.rst M doc/manual/source/rmsd_query.rst R doc/manual/source/rotor.rst M doc/manual/source/rotor_calibration.rst A doc/manual/source/rotors.rst M doc/manual/source/run_details.rst M doc/manual/source/second_moment.rst M doc/manual/source/simparams.rst M doc/manual/source/solutions/index.rst M doc/manual/source/solutions/solution_edit.rst M doc/manual/source/solutions/solution_new.rst M doc/manual/source/solutions/solution_settings.rst M doc/manual/source/start_page-int.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-new.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/us_administrator.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_equiltime.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/us_investigator.rst M doc/manual/source/us_project.rst M doc/manual/source/us_spectrum.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst M doc/manual/source/xpn_viewer.rst M gui/us_abstractrotor_gui.h M gui/us_rotor_gui.h Log Message: ----------- Merge branch 'main' into lukas/us_pseudo3d_combine Compare: https://github.com/ehb54/ultrascan3/compare/e3131079c982...0d1643338fa1 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Wed Apr 22 00:44:27 2026 From: noreply at github.com (Lukas Dobler) Date: Tue, 21 Apr 2026 23:44:27 -0700 Subject: [us-commits] [ehb54/ultrascan3] eca543: standardize reference section formatting in start_... Message-ID: Branch: refs/heads/lukas/manual_versioning Home: https://github.com/ehb54/ultrascan3 Commit: eca543a22ebb2991eb0b445f72e347063fbc8c72 https://github.com/ehb54/ultrascan3/commit/eca543a22ebb2991eb0b445f72e347063fbc8c72 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page.rst Log Message: ----------- standardize reference section formatting in start_page.rst and start_page-mw.rst Commit: a4f1f53d77b4eb249b8afb6b09bf96f052e25542 https://github.com/ehb54/ultrascan3/commit/a4f1f53d77b4eb249b8afb6b09bf96f052e25542 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- fix VERSION file path, change default version from unknown to 4.1.0-dev, refactor release construction Commit: db21d0c5a194f41886b613e65623c07d2bc40f9d https://github.com/ehb54/ultrascan3/commit/db21d0c5a194f41886b613e65623c07d2bc40f9d Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M utils/us_defines.h Log Message: ----------- add conditional definitions for US_Version and US_Description in us_defines.h Commit: 9cbcea1782add3926f1f936aa6696c0e418a0a33 https://github.com/ehb54/ultrascan3/commit/9cbcea1782add3926f1f936aa6696c0e418a0a33 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M .gitignore Log Message: ----------- add __pycache__ to .gitignore Commit: 102b83ab79cfa7cf1af1b528d6422565dd8b4bba https://github.com/ehb54/ultrascan3/commit/102b83ab79cfa7cf1af1b528d6422565dd8b4bba Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- fix spacing for no local changes Compare: https://github.com/ehb54/ultrascan3/compare/c0dbe2538c51...102b83ab79cf To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Wed Apr 22 00:54:32 2026 From: noreply at github.com (Lukas Dobler) Date: Tue, 21 Apr 2026 23:54:32 -0700 Subject: [us-commits] [ehb54/ultrascan3] ffce8c: Remove version and description guards in us_defines.h Message-ID: Branch: refs/heads/lukas/manual_versioning Home: https://github.com/ehb54/ultrascan3 Commit: ffce8c0558eef867b786192bfa509ba0b615e715 https://github.com/ehb54/ultrascan3/commit/ffce8c0558eef867b786192bfa509ba0b615e715 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M utils/us_defines.h Log Message: ----------- Remove version and description guards in us_defines.h To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Wed Apr 22 00:55:31 2026 From: noreply at github.com (Lukas Dobler) Date: Tue, 21 Apr 2026 23:55:31 -0700 Subject: [us-commits] [ehb54/ultrascan3] 36dc17: Update path comment for VERSION file location Message-ID: Branch: refs/heads/lukas/manual_versioning Home: https://github.com/ehb54/ultrascan3 Commit: 36dc1785d98214993d36bfc9d3b4d8274ddf93ba https://github.com/ehb54/ultrascan3/commit/36dc1785d98214993d36bfc9d3b4d8274ddf93ba Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update path comment for VERSION file location To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Wed Apr 22 02:28:43 2026 From: noreply at github.com (Lukas Dobler) Date: Wed, 22 Apr 2026 01:28:43 -0700 Subject: [us-commits] [ehb54/ultrascan3] 8cf898: Refactor signal-slot connections across multiple m... Message-ID: Branch: refs/heads/lukas/us_pseudo3d_combine Home: https://github.com/ehb54/ultrascan3 Commit: 8cf8988f671379dcf266a35155e091020469e547 https://github.com/ehb54/ultrascan3/commit/8cf8988f671379dcf266a35155e091020469e547 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M programs/us_2dsa/us_show_norm.cpp M programs/us_density_match/us_density_match.cpp M programs/us_ga_init/us_ga_init.cpp M programs/us_integral/us_integral.cpp M programs/us_modelmetrics/us_modelmetrics.cpp M programs/us_pcsa/us_analysis_control_pc.cpp Log Message: ----------- Refactor signal-slot connections across multiple modules to use modern syntax for improved readability and maintainability. Commit: e55fdb6a821372263be14ebfd0bd4debd621c904 https://github.com/ehb54/ultrascan3/commit/e55fdb6a821372263be14ebfd0bd4debd621c904 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M gui/us_plot.cpp Log Message: ----------- Ensure axis checks account for spectrogram items in `us_plot.cpp` Compare: https://github.com/ehb54/ultrascan3/compare/0d1643338fa1...e55fdb6a8213 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Wed Apr 22 06:27:41 2026 From: noreply at github.com (Lukas Dobler) Date: Wed, 22 Apr 2026 05:27:41 -0700 Subject: [us-commits] [ehb54/ultrascan3] 33967f: Refactor signal-slot connections in `us_analysis_c... Message-ID: Branch: refs/heads/lukas/us_pseudo3d_combine Home: https://github.com/ehb54/ultrascan3 Commit: 33967fac5d6dd4415b67c2e8bc928de7aad9504b https://github.com/ehb54/ultrascan3/commit/33967fac5d6dd4415b67c2e8bc928de7aad9504b Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M programs/us_pcsa/us_analysis_control_pc.cpp Log Message: ----------- Refactor signal-slot connections in `us_analysis_control_pc.cpp` to use modern syntax for improved readability and maintainability. To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Wed Apr 22 06:29:45 2026 From: noreply at github.com (Lukas Dobler) Date: Wed, 22 Apr 2026 05:29:45 -0700 Subject: [us-commits] [ehb54/ultrascan3] 3c2f9d: Simplify lambda expressions in `us_pseudo3d_combin... Message-ID: Branch: refs/heads/lukas/us_pseudo3d_combine Home: https://github.com/ehb54/ultrascan3 Commit: 3c2f9d3ede41ffdcd79d070e45afb8a238e729fb https://github.com/ehb54/ultrascan3/commit/3c2f9d3ede41ffdcd79d070e45afb8a238e729fb Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp Log Message: ----------- Simplify lambda expressions in `us_pseudo3d_combine.cpp` by removing redundant `&` capture. To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Wed Apr 22 10:38:52 2026 From: noreply at github.com (Lukas Dobler) Date: Wed, 22 Apr 2026 09:38:52 -0700 Subject: [us-commits] [ehb54/ultrascan3] c20633: Remove future annotations import Message-ID: Branch: refs/heads/lukas/manual_versioning Home: https://github.com/ehb54/ultrascan3 Commit: c20633e9c5e7406950dbc174cae33f60cb8c2d17 https://github.com/ehb54/ultrascan3/commit/c20633e9c5e7406950dbc174cae33f60cb8c2d17 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Remove future annotations import Removed future annotations import from conf.py. To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Wed Apr 22 11:29:27 2026 From: noreply at github.com (Lukas Dobler) Date: Wed, 22 Apr 2026 10:29:27 -0700 Subject: [us-commits] [ehb54/ultrascan3] 60491d: Add __pycache__ to .gitignore Message-ID: Branch: refs/heads/lukas/manual_versioning Home: https://github.com/ehb54/ultrascan3 Commit: 60491d8fe675ed9c20c175e16153aa1a2f594186 https://github.com/ehb54/ultrascan3/commit/60491d8fe675ed9c20c175e16153aa1a2f594186 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M .gitignore Log Message: ----------- Add __pycache__ to .gitignore To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Wed Apr 22 11:31:46 2026 From: noreply at github.com (emre brookes) Date: Wed, 22 Apr 2026 10:31:46 -0700 Subject: [us-commits] [ehb54/ultrascan3] Message-ID: Branch: refs/heads/lukas/manual_versioning Home: https://github.com/ehb54/ultrascan3 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Wed Apr 22 11:31:38 2026 From: noreply at github.com (emre brookes) Date: Wed, 22 Apr 2026 10:31:38 -0700 Subject: [us-commits] [ehb54/ultrascan3] eca543: standardize reference section formatting in start_... Message-ID: Branch: refs/heads/main Home: https://github.com/ehb54/ultrascan3 Commit: eca543a22ebb2991eb0b445f72e347063fbc8c72 https://github.com/ehb54/ultrascan3/commit/eca543a22ebb2991eb0b445f72e347063fbc8c72 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page.rst Log Message: ----------- standardize reference section formatting in start_page.rst and start_page-mw.rst Commit: a4f1f53d77b4eb249b8afb6b09bf96f052e25542 https://github.com/ehb54/ultrascan3/commit/a4f1f53d77b4eb249b8afb6b09bf96f052e25542 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- fix VERSION file path, change default version from unknown to 4.1.0-dev, refactor release construction Commit: db21d0c5a194f41886b613e65623c07d2bc40f9d https://github.com/ehb54/ultrascan3/commit/db21d0c5a194f41886b613e65623c07d2bc40f9d Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M utils/us_defines.h Log Message: ----------- add conditional definitions for US_Version and US_Description in us_defines.h Commit: 9cbcea1782add3926f1f936aa6696c0e418a0a33 https://github.com/ehb54/ultrascan3/commit/9cbcea1782add3926f1f936aa6696c0e418a0a33 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M .gitignore Log Message: ----------- add __pycache__ to .gitignore Commit: 102b83ab79cfa7cf1af1b528d6422565dd8b4bba https://github.com/ehb54/ultrascan3/commit/102b83ab79cfa7cf1af1b528d6422565dd8b4bba Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- fix spacing for no local changes Commit: ffce8c0558eef867b786192bfa509ba0b615e715 https://github.com/ehb54/ultrascan3/commit/ffce8c0558eef867b786192bfa509ba0b615e715 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M utils/us_defines.h Log Message: ----------- Remove version and description guards in us_defines.h Commit: 36dc1785d98214993d36bfc9d3b4d8274ddf93ba https://github.com/ehb54/ultrascan3/commit/36dc1785d98214993d36bfc9d3b4d8274ddf93ba Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update path comment for VERSION file location Commit: c20633e9c5e7406950dbc174cae33f60cb8c2d17 https://github.com/ehb54/ultrascan3/commit/c20633e9c5e7406950dbc174cae33f60cb8c2d17 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Remove future annotations import Removed future annotations import from conf.py. Commit: 60491d8fe675ed9c20c175e16153aa1a2f594186 https://github.com/ehb54/ultrascan3/commit/60491d8fe675ed9c20c175e16153aa1a2f594186 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M .gitignore Log Message: ----------- Add __pycache__ to .gitignore Commit: 2cb09af8870f32c9aa5e3463851c91e6741e0bdd https://github.com/ehb54/ultrascan3/commit/2cb09af8870f32c9aa5e3463851c91e6741e0bdd Author: emre brookes Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M .gitignore M doc/manual/source/conf.py M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page.rst Log Message: ----------- Merge pull request #416 from ehb54/lukas/manual_versioning Standardize formatting and update versioning in manual Compare: https://github.com/ehb54/ultrascan3/compare/c0dbe2538c51...2cb09af8870f To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Wed Apr 22 12:12:01 2026 From: noreply at github.com (Lukas Dobler) Date: Wed, 22 Apr 2026 11:12:01 -0700 Subject: [us-commits] [ehb54/ultrascan3] eca543: standardize reference section formatting in start_... Message-ID: Branch: refs/heads/lukas/us_pseudo3d_combine Home: https://github.com/ehb54/ultrascan3 Commit: eca543a22ebb2991eb0b445f72e347063fbc8c72 https://github.com/ehb54/ultrascan3/commit/eca543a22ebb2991eb0b445f72e347063fbc8c72 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page.rst Log Message: ----------- standardize reference section formatting in start_page.rst and start_page-mw.rst Commit: a4f1f53d77b4eb249b8afb6b09bf96f052e25542 https://github.com/ehb54/ultrascan3/commit/a4f1f53d77b4eb249b8afb6b09bf96f052e25542 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- fix VERSION file path, change default version from unknown to 4.1.0-dev, refactor release construction Commit: db21d0c5a194f41886b613e65623c07d2bc40f9d https://github.com/ehb54/ultrascan3/commit/db21d0c5a194f41886b613e65623c07d2bc40f9d Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M utils/us_defines.h Log Message: ----------- add conditional definitions for US_Version and US_Description in us_defines.h Commit: 9cbcea1782add3926f1f936aa6696c0e418a0a33 https://github.com/ehb54/ultrascan3/commit/9cbcea1782add3926f1f936aa6696c0e418a0a33 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M .gitignore Log Message: ----------- add __pycache__ to .gitignore Commit: 102b83ab79cfa7cf1af1b528d6422565dd8b4bba https://github.com/ehb54/ultrascan3/commit/102b83ab79cfa7cf1af1b528d6422565dd8b4bba Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- fix spacing for no local changes Commit: ffce8c0558eef867b786192bfa509ba0b615e715 https://github.com/ehb54/ultrascan3/commit/ffce8c0558eef867b786192bfa509ba0b615e715 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M utils/us_defines.h Log Message: ----------- Remove version and description guards in us_defines.h Commit: 36dc1785d98214993d36bfc9d3b4d8274ddf93ba https://github.com/ehb54/ultrascan3/commit/36dc1785d98214993d36bfc9d3b4d8274ddf93ba Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update path comment for VERSION file location Commit: c20633e9c5e7406950dbc174cae33f60cb8c2d17 https://github.com/ehb54/ultrascan3/commit/c20633e9c5e7406950dbc174cae33f60cb8c2d17 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Remove future annotations import Removed future annotations import from conf.py. Commit: 60491d8fe675ed9c20c175e16153aa1a2f594186 https://github.com/ehb54/ultrascan3/commit/60491d8fe675ed9c20c175e16153aa1a2f594186 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M .gitignore Log Message: ----------- Add __pycache__ to .gitignore Commit: 2cb09af8870f32c9aa5e3463851c91e6741e0bdd https://github.com/ehb54/ultrascan3/commit/2cb09af8870f32c9aa5e3463851c91e6741e0bdd Author: emre brookes Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M .gitignore M doc/manual/source/conf.py M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page.rst Log Message: ----------- Merge pull request #416 from ehb54/lukas/manual_versioning Standardize formatting and update versioning in manual Commit: eba2b0e533d5a81cad63c0edd5319256ba404cdd https://github.com/ehb54/ultrascan3/commit/eba2b0e533d5a81cad63c0edd5319256ba404cdd Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 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protocol Commit: 5ec1de61dba0f60ca68a98e66e6f8098e0d70384 https://github.com/ehb54/ultrascan3/commit/5ec1de61dba0f60ca68a98e66e6f8098e0d70384 Author: HabGab Date: 2026-04-14 (Tue, 14 Apr 2026) Changed paths: M gui/us_abstractrotor_gui.h M gui/us_rotor_gui.h Log Message: ----------- manual name change Commit: 73e408bbda42ba6961f01111ffb11b59c8976fce https://github.com/ehb54/ultrascan3/commit/73e408bbda42ba6961f01111ffb11b59c8976fce Author: Haben Gabir Date: 2026-04-14 (Tue, 14 Apr 2026) Changed paths: M doc/manual/source/analysprof_general.rst M doc/manual/source/index.rst M doc/manual/source/us_administrator.rst M doc/manual/source/us_investigator.rst M doc/manual/source/us_project.rst Log Message: ----------- minor updates Commit: aadeecb1340fbe3c58273b592171ad822dbd05dd https://github.com/ehb54/ultrascan3/commit/aadeecb1340fbe3c58273b592171ad822dbd05dd Author: Haben Gabir Date: 2026-04-14 (Tue, 14 Apr 2026) Changed paths: M doc/manual/source/index.rst Log Message: ----------- minor updates in Index Commit: 26b3afbb4f6320ad269fb86433af8187d3a79256 https://github.com/ehb54/ultrascan3/commit/26b3afbb4f6320ad269fb86433af8187d3a79256 Author: Haben Gabir Date: 2026-04-14 (Tue, 14 Apr 2026) Changed paths: A doc/manual/source/_static/images/reporter_comrep.png M doc/manual/source/index.rst M doc/manual/source/reporter.rst Log Message: ----------- These MINOR changes are killing me Commit: c35c8a4a2d552e064e5d40205f75deef685d0d6e https://github.com/ehb54/ultrascan3/commit/c35c8a4a2d552e064e5d40205f75deef685d0d6e Author: Haben Gabir Date: 2026-04-14 (Tue, 14 Apr 2026) Changed paths: M doc/manual/source/fe_match/index.rst Log Message: ----------- Minoooor Commit: 6bcf83da27c47886d434f95cb5c8b5b393efcc79 https://github.com/ehb54/ultrascan3/commit/6bcf83da27c47886d434f95cb5c8b5b393efcc79 Author: Haben Gabir Date: 2026-04-20 (Mon, 20 Apr 2026) Changed paths: A doc/manual/source/_static/images/us_spectrum-0-upded.png M doc/manual/source/_static/images/us_spectrum-1.png M 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Commit: 47638222ab16a5ea91b3b1574d03c5038374b2a4 https://github.com/ehb54/ultrascan3/commit/47638222ab16a5ea91b3b1574d03c5038374b2a4 Author: Haben Gabir Date: 2026-04-21 (Tue, 21 Apr 2026) Changed paths: M doc/manual/source/start_page-mw.rst Log Message: ----------- replaced old image in doc Commit: 1fece8e1783a00b7b4b2d53c0d3fb24784b20678 https://github.com/ehb54/ultrascan3/commit/1fece8e1783a00b7b4b2d53c0d3fb24784b20678 Author: HabGab Date: 2026-04-21 (Tue, 21 Apr 2026) Changed paths: Log Message: ----------- Merge branch 'main' into haben/docs-crosslinking Commit: c0dbe2538c5177518ec31c51efdbe5540a5df70d https://github.com/ehb54/ultrascan3/commit/c0dbe2538c5177518ec31c51efdbe5540a5df70d Author: HabGab Date: 2026-04-21 (Tue, 21 Apr 2026) Changed paths: M doc/manual/source/start_page-mw.rst Log Message: ----------- Merge pull request #415 from ehb54/haben/docs-crosslinking replaced old image in doc Commit: eca543a22ebb2991eb0b445f72e347063fbc8c72 https://github.com/ehb54/ultrascan3/commit/eca543a22ebb2991eb0b445f72e347063fbc8c72 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page.rst Log Message: ----------- standardize reference section formatting in start_page.rst and start_page-mw.rst Commit: a4f1f53d77b4eb249b8afb6b09bf96f052e25542 https://github.com/ehb54/ultrascan3/commit/a4f1f53d77b4eb249b8afb6b09bf96f052e25542 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- fix VERSION file path, change default version from unknown to 4.1.0-dev, refactor release construction Commit: db21d0c5a194f41886b613e65623c07d2bc40f9d https://github.com/ehb54/ultrascan3/commit/db21d0c5a194f41886b613e65623c07d2bc40f9d Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M utils/us_defines.h Log Message: ----------- add conditional definitions for US_Version and US_Description in us_defines.h Commit: 9cbcea1782add3926f1f936aa6696c0e418a0a33 https://github.com/ehb54/ultrascan3/commit/9cbcea1782add3926f1f936aa6696c0e418a0a33 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M .gitignore Log Message: ----------- add __pycache__ to .gitignore Commit: 102b83ab79cfa7cf1af1b528d6422565dd8b4bba https://github.com/ehb54/ultrascan3/commit/102b83ab79cfa7cf1af1b528d6422565dd8b4bba Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- fix spacing for no local changes Commit: ffce8c0558eef867b786192bfa509ba0b615e715 https://github.com/ehb54/ultrascan3/commit/ffce8c0558eef867b786192bfa509ba0b615e715 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M utils/us_defines.h Log Message: ----------- Remove version and description guards in us_defines.h Commit: 36dc1785d98214993d36bfc9d3b4d8274ddf93ba https://github.com/ehb54/ultrascan3/commit/36dc1785d98214993d36bfc9d3b4d8274ddf93ba Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update path comment for VERSION file location Commit: c20633e9c5e7406950dbc174cae33f60cb8c2d17 https://github.com/ehb54/ultrascan3/commit/c20633e9c5e7406950dbc174cae33f60cb8c2d17 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Remove future annotations import Removed future annotations import from conf.py. Commit: 60491d8fe675ed9c20c175e16153aa1a2f594186 https://github.com/ehb54/ultrascan3/commit/60491d8fe675ed9c20c175e16153aa1a2f594186 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M .gitignore Log Message: ----------- Add __pycache__ to .gitignore Commit: 2cb09af8870f32c9aa5e3463851c91e6741e0bdd https://github.com/ehb54/ultrascan3/commit/2cb09af8870f32c9aa5e3463851c91e6741e0bdd Author: emre brookes Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M .gitignore M doc/manual/source/conf.py M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page.rst Log Message: ----------- Merge pull request #416 from ehb54/lukas/manual_versioning Standardize formatting and update versioning in manual Commit: 46ff46e5434d882cb83343ffd5b854bf6f41f7d1 https://github.com/ehb54/ultrascan3/commit/46ff46e5434d882cb83343ffd5b854bf6f41f7d1 Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-04-22 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doc/manual/source/buoyancy_editor.rst M doc/manual/source/combine_models.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/conf.py M doc/manual/source/config.rst M doc/manual/source/convert.rst M doc/manual/source/dmga_init.rst M doc/manual/source/dmga_init_constr.rst M doc/manual/source/experiment/general.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/experiment/range.rst M doc/manual/source/experiment/rotor.rst M doc/manual/source/experiment/solutions.rst M doc/manual/source/experiment/speeds.rst M doc/manual/source/export_legacy.rst M doc/manual/source/fe_match/fe_dmga_adv.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/fe_match/index.rst M doc/manual/source/ga_initialize.rst M doc/manual/source/gmp/gmp_automation.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/grid_editor.rst M doc/manual/source/idist_combine.rst M doc/manual/source/index.rst M doc/manual/source/manage_data.rst M doc/manual/source/multi-wavelength/index.rst M doc/manual/source/multi-wavelength/mwl_species_fit.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/multi-wavelength/mwl_spectra.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_analys.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/pseudo3d.rst M doc/manual/source/reporter.rst M doc/manual/source/rmsd_query.rst R doc/manual/source/rotor.rst M doc/manual/source/rotor_calibration.rst A doc/manual/source/rotors.rst M doc/manual/source/run_details.rst M doc/manual/source/second_moment.rst M doc/manual/source/simparams.rst M doc/manual/source/solutions/index.rst M doc/manual/source/solutions/solution_edit.rst M doc/manual/source/solutions/solution_new.rst M doc/manual/source/solutions/solution_settings.rst M doc/manual/source/start_page-int.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-new.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/us_administrator.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_equiltime.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/us_investigator.rst M doc/manual/source/us_project.rst M doc/manual/source/us_spectrum.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst M doc/manual/source/xpn_viewer.rst M gui/us_abstractrotor_gui.h M gui/us_rotor_gui.h Log Message: ----------- Merge branch 'main' into alexey-dev-issue819 Compare: https://github.com/ehb54/ultrascan3/compare/c85594c8e6e1...46ff46e5434d To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Wed Apr 22 13:18:04 2026 From: noreply at github.com (alexsav815) Date: Wed, 22 Apr 2026 12:18:04 -0700 Subject: [us-commits] [ehb54/ultrascan3] Message-ID: Branch: refs/heads/alexey-forge-test Home: https://github.com/ehb54/ultrascan3 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Wed Apr 22 13:22:13 2026 From: noreply at github.com (alexsav815) Date: Wed, 22 Apr 2026 12:22:13 -0700 Subject: [us-commits] [ehb54/ultrascan3] 5b4dc8: For Forge test ... Message-ID: Branch: refs/heads/alexey-forge-test Home: https://github.com/ehb54/ultrascan3 Commit: 5b4dc8061d3b2c1e77bfd4cfac224b06b866b4ae https://github.com/ehb54/ultrascan3/commit/5b4dc8061d3b2c1e77bfd4cfac224b06b866b4ae Author: alexsav815 Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M utils/us_run_protocol.cpp Log Message: ----------- For Forge test ... To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Wed Apr 22 17:50:05 2026 From: noreply at github.com (aaron-auc) Date: Wed, 22 Apr 2026 16:50:05 -0700 Subject: [us-commits] [ehb54/ultrascan3] b1fbfb: GMP-dataDisk -- enable centerpiece selection in Ce... Message-ID: Branch: refs/heads/800-enhancement-nightly-build-using-vcpkg Home: https://github.com/ehb54/ultrascan3 Commit: b1fbfbcbd47cd296b70ccd6ac9178c4efd6b4a4e https://github.com/ehb54/ultrascan3/commit/b1fbfbcbd47cd296b70ccd6ac9178c4efd6b4a4e Author: alexsav815 Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h Log Message: ----------- GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk... Commit: a3b6b6a58f4f1d94a9268cc04a014d3ce1a1471e https://github.com/ehb54/ultrascan3/commit/a3b6b6a58f4f1d94a9268cc04a014d3ce1a1471e Author: alexsav815 Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp Log Message: ----------- [1]GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk... Commit: 992f15191ea67cf8c4dc85736429ab5939967d2f https://github.com/ehb54/ultrascan3/commit/992f15191ea67cf8c4dc85736429ab5939967d2f Author: alexsav815 Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp Log Message: ----------- [2]GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk... Commit: 50c4d0f4452a8f5f8052b4e63ae06abb11f8fe89 https://github.com/ehb54/ultrascan3/commit/50c4d0f4452a8f5f8052b4e63ae06abb11f8fe89 Author: alexsav815 Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp Log Message: ----------- [3]GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk... Commit: abe431ae514b67270d74e84b599ef069673c1164 https://github.com/ehb54/ultrascan3/commit/abe431ae514b67270d74e84b599ef069673c1164 Author: alexsav815 Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h Log Message: ----------- GMP-ABDE -- 4. EDIT points addressed for ticket #792... Commit: b1c5c0de414d093440081fca1a975a4e1118a9d1 https://github.com/ehb54/ultrascan3/commit/b1c5c0de414d093440081fca1a975a4e1118a9d1 Author: alexsav815 Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- [1]GMP-ABDE -- 4. EDIT points addressed for ticket #792... Commit: c53782335d3f1e5fc4fc2ea6f97ee3d64c79389b https://github.com/ehb54/ultrascan3/commit/c53782335d3f1e5fc4fc2ea6f97ee3d64c79389b Author: alexsav815 Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- [2]GMP-ABDE -- 4. EDIT points addressed for ticket #792... Commit: 672254d0e59b1e555aa0aa2506e7871bb188c5d4 https://github.com/ehb54/ultrascan3/commit/672254d0e59b1e555aa0aa2506e7871bb188c5d4 Author: alexsav815 Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- [3]GMP-ABDE -- 4. EDIT points addressed for ticket #792... Commit: 5470c9ac380ea0b9e9e522bcb85e831bf0e466fd https://github.com/ehb54/ultrascan3/commit/5470c9ac380ea0b9e9e522bcb85e831bf0e466fd Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M gui/us_solution_gui.cpp M gui/us_solution_gui.h Log Message: ----------- Enforce analyte for solution in us_solution_gui Commit: cb5e49b544fddf3329fd8662619f4a524628a69e https://github.com/ehb54/ultrascan3/commit/cb5e49b544fddf3329fd8662619f4a524628a69e Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M gui/us_solution_gui.cpp M gui/us_solution_gui.h Log Message: ----------- Update comments, fix function signature Commit: 01301f4fb775a852d7048cf88a308ff8dd796f5a https://github.com/ehb54/ultrascan3/commit/01301f4fb775a852d7048cf88a308ff8dd796f5a Author: alexsav815 Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M programs/us_abde/us_norm_profile.cpp Log Message: ----------- GMP-ABDE -- 5. Analysis addressed for ticket #792... Commit: 3ba588420b506827b73516e8dfa8cd4ae9b2ff28 https://github.com/ehb54/ultrascan3/commit/3ba588420b506827b73516e8dfa8cd4ae9b2ff28 Author: alexsav815 Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M programs/us_abde/us_norm_profile.cpp Log Message: ----------- [2]GMP-ABDE -- 5. Analysis addressed for ticket #792... Commit: ad1ceab5b0c51349e506ad4feebf2d0e9442b18f https://github.com/ehb54/ultrascan3/commit/ad1ceab5b0c51349e506ad4feebf2d0e9442b18f Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-21 (Sat, 21 Mar 2026) Changed paths: M gui/us_solution_gui.cpp Log Message: ----------- Show warning before accepting a solution without analyte or common vbar Commit: 7bfe32ca6b7830a5b30fc3e995feb35daccc7460 https://github.com/ehb54/ultrascan3/commit/7bfe32ca6b7830a5b30fc3e995feb35daccc7460 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-21 (Sat, 21 Mar 2026) Changed paths: M utils/us_astfem_rsa.cpp Log Message: ----------- Add band_forming check for low concentration flag Commit: fb3b2bbbe972a00864dd68b72b5da64234516056 https://github.com/ehb54/ultrascan3/commit/fb3b2bbbe972a00864dd68b72b5da64234516056 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-21 (Sat, 21 Mar 2026) Changed paths: M programs/us_astfem_sim/us_astfem_sim.cpp Log Message: ----------- Fix y-axis scale for band-forming plots Commit: aba103e8cab9d71929941aa888ae3aae0872e049 https://github.com/ehb54/ultrascan3/commit/aba103e8cab9d71929941aa888ae3aae0872e049 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-24 (Tue, 24 Mar 2026) Changed paths: M .github/workflows/bump-version.yml M .gitignore M CMakeLists.txt M CMakePresets.json M LICENSE.txt M README.manual M admin/cmake/GenerateVersion.cmake A admin/cmake/README.md A admin/cmake/packaging/README.md A admin/cmake/packaging/linux/LinuxDeploy.cmake A admin/cmake/packaging/linux/LinuxHpcDeploy.cmake A admin/cmake/packaging/linux/LinuxHpcPkg.cmake A admin/cmake/packaging/linux/LinuxPkg.cmake A admin/cmake/packaging/macos/MacDeploy.cmake A admin/cmake/packaging/macos/MacHpcDeploy.cmake A admin/cmake/packaging/macos/MacHpcPkg.cmake A admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake A 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utils/CMakeLists.txt M utils/us_memory.cpp M vcpkg.json Log Message: ----------- Merge branch 'main' into lukas/us_astfem_sim_bfe_fix Commit: e219670a84259a14eabcbd6567f410caa19460e4 https://github.com/ehb54/ultrascan3/commit/e219670a84259a14eabcbd6567f410caa19460e4 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-26 (Thu, 26 Mar 2026) Changed paths: M makeall.sh Log Message: ----------- Fix makeall.sh permissions Commit: ffbfc46c1f6425db8f285c8ebfe83093848eb1b6 https://github.com/ehb54/ultrascan3/commit/ffbfc46c1f6425db8f285c8ebfe83093848eb1b6 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-26 (Thu, 26 Mar 2026) Changed paths: M qmakeall.sh Log Message: ----------- Fix qmakeall.sh permissions Commit: ce69cccd373c62d3682696c7c1e3afbec47ca21c https://github.com/ehb54/ultrascan3/commit/ce69cccd373c62d3682696c7c1e3afbec47ca21c Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-27 (Fri, 27 Mar 2026) Changed paths: M gui/us_solution_gui.cpp M gui/us_solution_gui.h Log Message: ----------- Merge pull request #397 from ehb54/lukas/us_solution_analyte Enforce analyte for solution in us_solution_gui Commit: cdf7099448e0de34a4e877280839f6acfacf5596 https://github.com/ehb54/ultrascan3/commit/cdf7099448e0de34a4e877280839f6acfacf5596 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-27 (Fri, 27 Mar 2026) Changed paths: M gui/us_solution_gui.cpp M gui/us_solution_gui.h Log Message: ----------- Merge branch 'main' into lukas/us_astfem_sim_bfe_fix Commit: b543a92af379330a545e7dcc63e12daaf3d45239 https://github.com/ehb54/ultrascan3/commit/b543a92af379330a545e7dcc63e12daaf3d45239 Author: alexsav815 Date: 2026-03-27 (Fri, 27 Mar 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- GMP-ABDE -- 4. 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vcpkg.json Log Message: ----------- Merge pull request #401 from ehb54/main pull main into alexey-dev-issue792 Commit: 82d4d191eb9afe4cf103b3792c6730f51eb8bafa https://github.com/ehb54/ultrascan3/commit/82d4d191eb9afe4cf103b3792c6730f51eb8bafa Author: alexsav815 Date: 2026-04-02 (Thu, 02 Apr 2026) Changed paths: M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h Log Message: ----------- GMP-ABDE -- 4. EDIT: ask user if only last scan was selected for each channel before accepting new edit parameters... Commit: e58b784f94dc22571d37ac77acdc90c148ee0004 https://github.com/ehb54/ultrascan3/commit/e58b784f94dc22571d37ac77acdc90c148ee0004 Author: alexsav815 Date: 2026-04-02 (Thu, 02 Apr 2026) Changed paths: M programs/us_abde/us_norm_profile.cpp M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h Log Message: ----------- Merge pull request #398 from ehb54/alexey-dev-issue792 Alexey dev issue792: GMP-ABDE & dataDisk changes Commit: 94b9a553e412fb675ba67eea2c9f665b6207233d https://github.com/ehb54/ultrascan3/commit/94b9a553e412fb675ba67eea2c9f665b6207233d Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/CMakeLists.txt Log Message: ----------- Update CMakeLists to use `${SPHINX_PROJECT}` variables for Qt help file generation paths (`.qhp` and `.qhcp`). Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: e2d7da6bbf9fcc62e4bfa452f5ec19623488611e https://github.com/ehb54/ultrascan3/commit/e2d7da6bbf9fcc62e4bfa452f5ec19623488611e Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/requirements.txt Log Message: ----------- Add `sphinxcontrib-qthelp` and `myst-parser` to documentation requirements for Qt help and Markdown support. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 1e69c5071f55b5bc4963bc33c54c1f5978d9a86f https://github.com/ehb54/ultrascan3/commit/1e69c5071f55b5bc4963bc33c54c1f5978d9a86f Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Enhance Sphinx configuration: add version metadata generation from Git, update QtHelp/HTML output, and refine documentation structure. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 64293373d85c1dd99096806b49351207ccc8fcbd https://github.com/ehb54/ultrascan3/commit/64293373d85c1dd99096806b49351207ccc8fcbd Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/index.rst Log Message: ----------- Expand UltraScan-III documentation: add comprehensive structure, improve navigation with toctree captions, and include download link for PDF manual. 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Commit: 38351d9b483d34b0d464cdc0a02cf4d0c711a5f0 https://github.com/ehb54/ultrascan3/commit/38351d9b483d34b0d464cdc0a02cf4d0c711a5f0 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/auto_index.py Log Message: ----------- Refine `auto_index` title processing: improve whitespace handling, enhance dimensional notation standardization, and ensure title case consistency. Commit: 881728a585525975764e48eb87de544e1a8f5ed6 https://github.com/ehb54/ultrascan3/commit/881728a585525975764e48eb87de544e1a8f5ed6 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/fe_match/index.rst Log Message: ----------- Standardize section headers and titles in FE Match documentation for consistency and improve formatting. 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Commit: 99bbe83fea89b40008e71864323759b4a75ff8cb https://github.com/ehb54/ultrascan3/commit/99bbe83fea89b40008e71864323759b4a75ff8cb Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/start_page-rpt.rst Log Message: ----------- Standardize section headers, titles, and dimensional notations in documentation for improved formatting and consistency. 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----------- Merge pull request #402 from ehb54/lukas/manual Add sphinx manual Commit: dd51d90b60e4fd6785c98531588a585dc0fb34ed https://github.com/ehb54/ultrascan3/commit/dd51d90b60e4fd6785c98531588a585dc0fb34ed Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/CMakeLists.txt A doc/manual/source/2dsa/2dsa_adv.rst A doc/manual/source/2dsa/2dsa_analys.rst A doc/manual/source/2dsa/2dsa_main.rst A doc/manual/source/2dsa/index.rst A doc/manual/source/3000_rpm.rst A doc/manual/source/3d_plot.rst R doc/manual/source/_static/css/custom.css A doc/manual/source/_static/custom.css A doc/manual/source/_static/images/2dsa_3dplot.png A doc/manual/source/_static/images/2dsa_advan.png A doc/manual/source/_static/images/2dsa_analvv.png A doc/manual/source/_static/images/2dsa_analys.png A doc/manual/source/_static/images/2dsa_main-c.png A doc/manual/source/_static/images/2dsa_main-o.png A 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----------- Merge pull request #404 from ehb54/main update demeler-doc1 to main Commit: cd2bc2e7c99e075b63a282c8e687e6d0e111670d https://github.com/ehb54/ultrascan3/commit/cd2bc2e7c99e075b63a282c8e687e6d0e111670d Author: Demeler Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/fit_meniscus.rst Log Message: ----------- Modify capitalization in fit meniscus Commit: cc049b493eb8cb3409dd4d22051e345fd80c7982 https://github.com/ehb54/ultrascan3/commit/cc049b493eb8cb3409dd4d22051e345fd80c7982 Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/fit_meniscus.rst Log Message: ----------- Merge pull request #405 from ehb54/demeler-doc1 Demeler doc1 Commit: 11572ca66d369080b73f5925c9b46c3b7200c538 https://github.com/ehb54/ultrascan3/commit/11572ca66d369080b73f5925c9b46c3b7200c538 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-06 (Mon, 06 Apr 2026) Changed paths: M doc/manual/CMakeLists.txt M doc/manual/Makefile M doc/manual/source/index.rst Log Message: ----------- Update Sphinx build system: include `auto_index.py`, link PDF manual in HTML, and clean PDF on `make clean`. Commit: e2fbf48c659f3fad2922c9067a43f1b3bdc0ec5e https://github.com/ehb54/ultrascan3/commit/e2fbf48c659f3fad2922c9067a43f1b3bdc0ec5e Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-06 (Mon, 06 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update LaTeX configuration: set `latex_use_xindy` to False and redefine font settings for better Unicode handling and compatibility. Commit: 78d927e26195be17b4a8ff09959676a6247bcb34 https://github.com/ehb54/ultrascan3/commit/78d927e26195be17b4a8ff09959676a6247bcb34 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-06 (Mon, 06 Apr 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h Log Message: ----------- Ensure zoom stack initialization on zoom button press Commit: dcc8ccbdac5394275563aeee0c8c523a6df45589 https://github.com/ehb54/ultrascan3/commit/dcc8ccbdac5394275563aeee0c8c523a6df45589 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-06 (Mon, 06 Apr 2026) Changed paths: M gui/us_plot.cpp Log Message: ----------- Refactor zoom logic to handle null plots and absolute values Commit: f7169d62eaece4fd69dd8f88ab06432a8bb390f0 https://github.com/ehb54/ultrascan3/commit/f7169d62eaece4fd69dd8f88ab06432a8bb390f0 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h A test/utils/test_us_help_pages.cpp Log Message: ----------- Add unit test for validating existence of help pages and refactor zoom stack initialization for improved consistency. Commit: a542b58b077c8629e05993705eb0967c8e2ed720 https://github.com/ehb54/ultrascan3/commit/a542b58b077c8629e05993705eb0967c8e2ed720 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .gitignore Log Message: ----------- Update .gitignore to exclude `doc/manual/build` Commit: 3841b3da9b269c931e61bd8332217ea7edafa5ce https://github.com/ehb54/ultrascan3/commit/3841b3da9b269c931e61bd8332217ea7edafa5ce Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M utils/CMakeLists.txt M utils/us_extern.h Log Message: ----------- Add static library support: define `US_UTIL_STATIC` and conditionally update `us_extern.h`. Commit: 8bd5bb513393dabe50c036ffbfe60f96a6b3ca21 https://github.com/ehb54/ultrascan3/commit/8bd5bb513393dabe50c036ffbfe60f96a6b3ca21 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M utils/us_buffer.h Log Message: ----------- Initialize `grad_form` flag to `false` in `us_buffer.h`. Commit: 923260944deb1b79e310ceb98a16effa5b5090ca https://github.com/ehb54/ultrascan3/commit/923260944deb1b79e310ceb98a16effa5b5090ca Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M gui/us_abstractrotor_gui.h M gui/us_analyte_gui.h M gui/us_buffer_gui.h M gui/us_data_loader.h M gui/us_experiment_gui.h M gui/us_get_run.h M gui/us_load_auc.h M gui/us_model_loader.h M gui/us_select_triples.h M gui/us_solution_gui.h M programs/us_2dsa/us_adv_analysis_2d.h M programs/us_2dsa/us_analysis_control_2d.h M programs/us_2dsa/us_plot_control_2d.h M programs/us_esigner_gmp/us_esigner_gmp.h M programs/us_fematch/us_advanced_fem.h M programs/us_fematch/us_fematch.h M programs/us_fematch/us_plot_control_fem.h M programs/us_mwl_species_fit/us_mwl_species_fit.h M programs/us_mwl_species_sim/us_mwl_species_sim.h M programs/us_mwl_spectra/us_mwl_spectra.h M programs/us_mwl_spectra/us_mwls_pltctl.h M programs/us_mwlr_viewer/us_mwlr_viewer.h M programs/us_pcsa/us_adv_analysis_pc.h M programs/us_pcsa/us_analysis_control_pc.h M programs/us_pcsa/us_pcsa.h M programs/us_pcsa/us_plot_control_pc.h M programs/us_pcsa/us_rpscan.h M programs/us_pseudo3d_combine/us_pseudo3d_combine.h M programs/us_pseudo3d_combine/us_remove_distros.h M programs/us_ramp/us_select_triples_ra.h M programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_vhw_combine/us_vhwc_pltctl.h Log Message: ----------- Update help file paths for improved documentation consistency and organization. Commit: 78e6d90c9756f558dd3c67e03ec447dbaa996a8a https://github.com/ehb54/ultrascan3/commit/78e6d90c9756f558dd3c67e03ec447dbaa996a8a Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .github/workflows/doc-build.yml Log Message: ----------- Let github action only build the documnetaion with the qthelp builder, because latex dependencies are currently missing Commit: 05eb1370b6158124bcafd398fef77466e66be0aa https://github.com/ehb54/ultrascan3/commit/05eb1370b6158124bcafd398fef77466e66be0aa Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h Log Message: ----------- Remove feature commit in wrong branch Commit: 18c02644a764f585fd585e1af1c21e4d5790b60c https://github.com/ehb54/ultrascan3/commit/18c02644a764f585fd585e1af1c21e4d5790b60c Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h Log Message: ----------- Merge pull request #406 from ehb54/lukas/us_plot_zoom_qwt616 Ensure zoom stack initialization on zoom button press Commit: 3c1312a39ac562248315fb410c301c9d8eab79f5 https://github.com/ehb54/ultrascan3/commit/3c1312a39ac562248315fb410c301c9d8eab79f5 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h Log Message: ----------- Merge branch 'main' into lukas/manual_test/make Commit: 99fc3a66c861b6275cedd397bfd03e34e85d9435 https://github.com/ehb54/ultrascan3/commit/99fc3a66c861b6275cedd397bfd03e34e85d9435 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: A .github/workflows/sphinx-doc-build.yml Log Message: ----------- Add GitHub Actions workflow for Sphinx documentation build Commit: 5fa677c2afd3175fa29a37165561f4125a867c5d https://github.com/ehb54/ultrascan3/commit/5fa677c2afd3175fa29a37165561f4125a867c5d Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .github/workflows/sphinx-doc-build.yml Log Message: ----------- Refactor Sphinx GitHub Actions workflow: replace deprecated problem matcher usage, streamline build commands, and add error handling. Commit: b91a5ae2fecdc63970efdf031426e000eff8cc6e https://github.com/ehb54/ultrascan3/commit/b91a5ae2fecdc63970efdf031426e000eff8cc6e Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: A .github/sphinx-matcher.json Log Message: ----------- Add Sphinx problem matcher configuration for GitHub Actions Commit: 45da34200ce91a23a4f1f8d168e7a1ee612b03b5 https://github.com/ehb54/ultrascan3/commit/45da34200ce91a23a4f1f8d168e7a1ee612b03b5 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .github/workflows/sphinx-doc-build.yml Log Message: ----------- Annotate Sphinx build warnings in GitHub Actions workflow and update qthelp build step for improved error handling. Commit: f3750319ef93a4a4b5f925ffaa38acd1ebb8f6f5 https://github.com/ehb54/ultrascan3/commit/f3750319ef93a4a4b5f925ffaa38acd1ebb8f6f5 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .github/workflows/sphinx-doc-build.yml Log Message: ----------- Replace custom Sphinx warning annotation script with `sphinx-doc/github-problem-matcher` for streamlined GitHub Actions workflow. Commit: bc2b74fbb9b5698c8269f2d6b060ce420ab6697a https://github.com/ehb54/ultrascan3/commit/bc2b74fbb9b5698c8269f2d6b060ce420ab6697a Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: R .github/sphinx-matcher.json Log Message: ----------- Remove obsolete Sphinx problem matcher configuration from GitHub Actions. Commit: 715a3fd86ec9bdb692b3e1fa0ce393a86548c213 https://github.com/ehb54/ultrascan3/commit/715a3fd86ec9bdb692b3e1fa0ce393a86548c213 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/convert.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/export_legacy.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/second_moment.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst Log Message: ----------- Fix triplicates to triples Commit: f1b1aba77a1f2da432e6262d842221eb275d2dd0 https://github.com/ehb54/ultrascan3/commit/f1b1aba77a1f2da432e6262d842221eb275d2dd0 Author: HabGab Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst A doc/manual/source/_static/images/dmga-save.png A doc/manual/source/_static/images/dmga.png A doc/manual/source/_static/images/dmga_constr.png A doc/manual/source/_static/images/fe_dmga_adv.png M doc/manual/source/buoyancy_editor.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/convert.rst M doc/manual/source/dmga_init.rst M doc/manual/source/dmga_init_constr.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/experiment/range.rst M doc/manual/source/export_legacy.rst A doc/manual/source/fe_match/fe_dmga_adv.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/fe_match/index.rst M doc/manual/source/gmp/gmp_automation.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/index.rst M doc/manual/source/multi-wavelength/mwl_species_fit.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/rmsd_query.rst M doc/manual/source/run_details.rst M doc/manual/source/second_moment.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst M doc/manual/source/xpn_viewer.rst Log Message: ----------- update to latest Commit: ff98f3a480b918b42a59334bc0506f87b59b5a37 https://github.com/ehb54/ultrascan3/commit/ff98f3a480b918b42a59334bc0506f87b59b5a37 Author: HabGab Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M programs/us_integral/us_delete_models.h Log Message: ----------- first link change - integral Commit: 584135021b461a9f753c2ac63b2f37df4cd85b0b https://github.com/ehb54/ultrascan3/commit/584135021b461a9f753c2ac63b2f37df4cd85b0b Author: HabGab Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: A doc/manual/source/_static/images/delseltrip.png M doc/manual/source/common_dialogs.rst M programs/us_experiment/us_experiment_gui_optima.h M programs/us_integral/us_delete_models.h M programs/us_integral/us_integral.h Log Message: ----------- update us_experiment show.help Commit: 8e3da82ae6b7563f455e97718bb1f335a1c9bfcc https://github.com/ehb54/ultrascan3/commit/8e3da82ae6b7563f455e97718bb1f335a1c9bfcc Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-08 (Wed, 08 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/buffer/buffer_edit.rst M doc/manual/source/buffer/buffer_settings.rst M doc/manual/source/buoyancy_editor.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/convert.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/experiment/range.rst M doc/manual/source/export_legacy.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/gmp/gmp_automation.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/multi-wavelength/mwl_species_fit.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/rmsd_query.rst M doc/manual/source/run_details.rst M doc/manual/source/second_moment.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst M doc/manual/source/xpn_viewer.rst Log Message: ----------- Standardize terminology: replace "Triplicates" with "Triples" across documentation for clarity and consistency. Commit: 7128a07267ee0a0fd7913ea221c2cd891b7099a8 https://github.com/ehb54/ultrascan3/commit/7128a07267ee0a0fd7913ea221c2cd891b7099a8 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-08 (Wed, 08 Apr 2026) Changed paths: M test/utils/test_us_help_pages.cpp M test/utils/test_us_regex.cpp Log Message: ----------- Improve test failure messages: use `ADD_FAILURE_AT` for precise file/line annotation and enhance regex and help file error clarity Commit: 9cf710938424ec4c02179f22bb8da50b226085c6 https://github.com/ehb54/ultrascan3/commit/9cf710938424ec4c02179f22bb8da50b226085c6 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-08 (Wed, 08 Apr 2026) Changed paths: A .github/gtest-us.json M .github/workflows/unit-tests-v2.yml M .github/workflows/unit-tests.yml Log Message: ----------- Add GoogleTest problem matcher to GitHub Actions workflows for enhanced test failure annotation Commit: d849477c413c4de8c709970000b9beed563952aa https://github.com/ehb54/ultrascan3/commit/d849477c413c4de8c709970000b9beed563952aa Author: HabGab Date: 2026-04-08 (Wed, 08 Apr 2026) Changed paths: M programs/us_2dsa/us_2dsa.h M programs/us_config/us_color.cpp M programs/us_config/us_database.cpp M programs/us_config/us_xpnhost.cpp M programs/us_config/us_xpnhost_db.cpp M programs/us_mwlr_viewer/us_mwl_pltctrl.h Log Message: ----------- unit test link updates Commit: ba9907ccbb59086289b70ee897744f22b939a693 https://github.com/ehb54/ultrascan3/commit/ba9907ccbb59086289b70ee897744f22b939a693 Author: HabGab Date: 2026-04-08 (Wed, 08 Apr 2026) Changed paths: A doc/manual/source/_static/images/select_prefilt.png M doc/manual/source/common_dialogs.rst M gui/us_select_edits.h M gui/us_select_item.h M gui/us_select_runs.h M programs/us_config/us_admin.cpp M programs/us_config/us_font.cpp Log Message: ----------- unit tests help link update Commit: 9a107befce5878fa969190700c2a2f6ef48ce068 https://github.com/ehb54/ultrascan3/commit/9a107befce5878fa969190700c2a2f6ef48ce068 Author: HabGab Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: A doc/manual/source/analysprof_general.rst M doc/manual/source/astfem_sim.rst M doc/manual/source/convert.rst A doc/manual/source/ramp_data.rst A doc/manual/source/us_administrator.rst M doc/manual/source/us_edit.rst M programs/us_analysis_profile/us_analysis_profile.h M programs/us_config/us_advanced.cpp M programs/us_edit/us_edit_scan.h M programs/us_edit/us_select_lambdas.h M programs/us_ramp/us_experiment_gui_ra.h Log Message: ----------- updates Commit: 6fe43510daa8d32555c611669eaa32ab11da07ff https://github.com/ehb54/ultrascan3/commit/6fe43510daa8d32555c611669eaa32ab11da07ff Author: HabGab Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: A doc/manual/source/_static/images/edit_exclude_scan.png A doc/manual/source/_static/images/edit_scan.png Log Message: ----------- images Commit: 290b3ed2436ce1c133fb54567579f869c3e2ea70 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programs/us_edit/us_exclude_profile.h M programs/us_fematch/us_adv_dmgamc.h M programs/us_globalequil/us_eqfit_control.h M programs/us_globalequil/us_eqmodel_control.h M programs/us_globalequil/us_model_adpars.h M programs/us_globalequil/us_model_select.h M programs/us_pcsa/us_mlplot.h Log Message: ----------- unit test Commit: c8515e182cb1cddab6d51258efd8a99f97c8c667 https://github.com/ehb54/ultrascan3/commit/c8515e182cb1cddab6d51258efd8a99f97c8c667 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: M .github/gtest-us.json Log Message: ----------- Fix matcher Commit: ff35eb4d37eed1d9a2fdd2200d69a00adfcdb41c https://github.com/ehb54/ultrascan3/commit/ff35eb4d37eed1d9a2fdd2200d69a00adfcdb41c Author: HabGab Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_analys.rst M doc/manual/source/2dsa/index.rst M doc/manual/source/analyte/analyte_edit.rst M doc/manual/source/analyte/analyte_select.rst M doc/manual/source/astfem_sim.rst M doc/manual/source/buoyancy_editor.rst M doc/manual/source/combine_models.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/components.rst M doc/manual/source/config.rst M doc/manual/source/convert.rst M doc/manual/source/dens_match.rst M doc/manual/source/dmga_init.rst M doc/manual/source/experiment/cells.rst M doc/manual/source/experiment/optics.rst M doc/manual/source/experiment/range.rst M doc/manual/source/experiment/submit.rst M doc/manual/source/export_legacy.rst M doc/manual/source/idist_combine.rst M doc/manual/source/manage_data.rst M doc/manual/source/model_editor.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_adv.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/pseudo3d.rst M doc/manual/source/rmsd_query.rst M doc/manual/source/rotor.rst M doc/manual/source/solutions/solution_edit.rst M doc/manual/source/solutions/solution_select.rst M doc/manual/source/start_page-int.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/vhw_enhanced.rst M programs/us_config/us_xpnhost_db.cpp M programs/us_pcsa/us_mrecs_loader.h Log Message: ----------- sphynx links Commit: 287fbcbd18bec2e702fabfb4298a69a0b62ee537 https://github.com/ehb54/ultrascan3/commit/287fbcbd18bec2e702fabfb4298a69a0b62ee537 Author: HabGab Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: A .github/gtest-us.json M .github/workflows/doc-build.yml A .github/workflows/sphinx-doc-build.yml M .github/workflows/unit-tests-v2.yml M .github/workflows/unit-tests.yml M .gitignore M doc/manual/CMakeLists.txt M doc/manual/Makefile M doc/manual/source/2dsa/2dsa_analys.rst M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/2dsa/index.rst A doc/manual/source/_static/images/delseltrip.png A 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M programs/us_globalequil/us_eqfit_control.h M programs/us_globalequil/us_eqmodel_control.h M programs/us_globalequil/us_model_adpars.h M programs/us_globalequil/us_model_select.h M programs/us_integral/us_delete_models.h M programs/us_integral/us_integral.h M programs/us_mwl_species_fit/us_mwl_species_fit.h M programs/us_mwl_species_sim/us_mwl_species_sim.h M programs/us_mwl_spectra/us_mwl_spectra.h M programs/us_mwl_spectra/us_mwls_pltctl.h M programs/us_mwlr_viewer/us_mwl_pltctrl.h M programs/us_mwlr_viewer/us_mwlr_viewer.h M programs/us_pcsa/us_adv_analysis_pc.h M programs/us_pcsa/us_analysis_control_pc.h M programs/us_pcsa/us_mlplot.h M programs/us_pcsa/us_mrecs_loader.h M programs/us_pcsa/us_pcsa.h M programs/us_pcsa/us_plot_control_pc.h M programs/us_pcsa/us_rpscan.h M programs/us_pseudo3d_combine/us_pseudo3d_combine.h M programs/us_pseudo3d_combine/us_remove_distros.h M programs/us_ramp/us_experiment_gui_ra.h M programs/us_ramp/us_select_triples_ra.h M programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_vhw_combine/us_vhwc_pltctl.h A test/utils/test_us_help_pages.cpp M test/utils/test_us_regex.cpp M utils/CMakeLists.txt M utils/us_buffer.h M utils/us_extern.h Log Message: ----------- Merge pull request #408 from ehb54/lukas/manual_test/make Enhance documentation build system and improve Unicode handling Commit: 56ac62aee0f30eb92b6ba1c4fb11e0b3a4be919c https://github.com/ehb54/ultrascan3/commit/56ac62aee0f30eb92b6ba1c4fb11e0b3a4be919c Author: aaron-auc Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: A .github/workflows/nightly-builds.yml A .github/workflows/nightly-macos-arm.yml A .github/workflows/nightly-macos-intel.yml A .github/workflows/nightly-oraclelinux8.yml A .github/workflows/nightly-ubuntu.yml A .github/workflows/nightly-windows.yml A .github/workflows/on-demand-build.yml A .github/workflows/release.yml M .github/workflows/unit-tests-v2.yml M CMakeLists.txt M admin/cmake/GenerateVersion.cmake M admin/cmake/triplets/arm64-linux.cmake A admin/cmake/triplets/x64-linux-dynamic.cmake A admin/cmake/triplets/x64-linux.cmake A buildsys/vcpkg/overlay-ports/at-spi2-core/portfile.cmake A buildsys/vcpkg/overlay-ports/at-spi2-core/vcpkg.json A buildsys/vcpkg/overlay-ports/qtbase/GLIB2-static.patch A buildsys/vcpkg/overlay-ports/qtbase/allow_outside_prefix.patch A buildsys/vcpkg/overlay-ports/qtbase/clang-cl_QGADGET_fix.diff A buildsys/vcpkg/overlay-ports/qtbase/clang-cl_source_location.patch A buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_install_copyright.cmake A buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_install_submodule.cmake A buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_port_details.cmake A buildsys/vcpkg/overlay-ports/qtbase/config_install.patch A buildsys/vcpkg/overlay-ports/qtbase/dont_force_cmakecache_latest.patch A buildsys/vcpkg/overlay-ports/qtbase/env.patch A buildsys/vcpkg/overlay-ports/qtbase/fix-host-aliasing.patch A buildsys/vcpkg/overlay-ports/qtbase/fix-libresolv-test.patch A buildsys/vcpkg/overlay-ports/qtbase/fix-link-lib-discovery.patch A buildsys/vcpkg/overlay-ports/qtbase/fix-missing-include.patch A buildsys/vcpkg/overlay-ports/qtbase/fix_cmake_build.patch A buildsys/vcpkg/overlay-ports/qtbase/fix_deploy_windows.patch A buildsys/vcpkg/overlay-ports/qtbase/fix_egl.patch A buildsys/vcpkg/overlay-ports/qtbase/fix_egl_2.patch A buildsys/vcpkg/overlay-ports/qtbase/framework.patch A buildsys/vcpkg/overlay-ports/qtbase/harfbuzz.patch A buildsys/vcpkg/overlay-ports/qtbase/installed_dir.patch A buildsys/vcpkg/overlay-ports/qtbase/macdeployqt-symlinks.patch A buildsys/vcpkg/overlay-ports/qtbase/moltenvk.patch A buildsys/vcpkg/overlay-ports/qtbase/port.data.cmake A buildsys/vcpkg/overlay-ports/qtbase/portfile.cmake A buildsys/vcpkg/overlay-ports/qtbase/qmake.debug.bat A buildsys/vcpkg/overlay-ports/qtbase/qt.conf.in A buildsys/vcpkg/overlay-ports/qtbase/qtpaths.debug.bat A buildsys/vcpkg/overlay-ports/qtbase/use-shared-mime-info.patch A buildsys/vcpkg/overlay-ports/qtbase/use_inotify_on_freebsd.patch A buildsys/vcpkg/overlay-ports/qtbase/vcpkg.json A buildsys/vcpkg/overlay-ports/qtbase/windeployqt.debug.bat A buildsys/vcpkg/overlay-ports/qtbase/xcodebuild-not-installed.patch M programs/us/CMakeLists.txt M scripts/bootstrap-linux.sh M scripts/build.sh A scripts/warm-cache.sh M vcpkg.json Log Message: ----------- add: nightly build Compare: https://github.com/ehb54/ultrascan3/compare/a3d889c69f70...56ac62aee0f3 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Wed Apr 22 17:58:57 2026 From: noreply at github.com (aaron-auc) Date: Wed, 22 Apr 2026 16:58:57 -0700 Subject: [us-commits] [ehb54/ultrascan3] 29678f: GMP -- additional check for the protocol internal... Message-ID: Branch: refs/heads/800-enhancement-nightly-build-using-vcpkg Home: https://github.com/ehb54/ultrascan3 Commit: 29678f933d80ecac003838e4bde2c37a65512482 https://github.com/ehb54/ultrascan3/commit/29678f933d80ecac003838e4bde2c37a65512482 Author: alexsav815 Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: M utils/us_run_protocol.cpp Log Message: ----------- GMP -- additional check for the protocol internals equality before submitting GMP run: check for operator (and revs & approvers)... Commit: 77adb01c3a9c4133da796314b1007c031f6dd089 https://github.com/ehb54/ultrascan3/commit/77adb01c3a9c4133da796314b1007c031f6dd089 Author: Haben Gabir Date: 2026-04-10 (Fri, 10 Apr 2026) Changed paths: M doc/manual/source/config.rst Log Message: ----------- check new branch Commit: 0a0e0eca8a8da8aa4db25e74431e3d89b5808edb https://github.com/ehb54/ultrascan3/commit/0a0e0eca8a8da8aa4db25e74431e3d89b5808edb Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-10 (Fri, 10 Apr 2026) Changed paths: Log Message: ----------- Merge pull request #410 from ehb54/main Merge pull request #408 from ehb54/lukas/manual_test/make Commit: d2c99821961553c3153b8d32337f97b7511bcf81 https://github.com/ehb54/ultrascan3/commit/d2c99821961553c3153b8d32337f97b7511bcf81 Author: HabGab Date: 2026-04-13 (Mon, 13 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_analys.rst M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/analyte/analyte_new.rst M 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doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/multi-wavelength/index.rst M doc/manual/source/multi-wavelength/mwl_species_fit.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_analys.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/rmsd_query.rst M doc/manual/source/rotor_calibration.rst M doc/manual/source/run_details.rst M doc/manual/source/second_moment.rst M doc/manual/source/solutions/solution_new.rst M doc/manual/source/solutions/solution_settings.rst M doc/manual/source/start_page-int.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_equiltime.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst M doc/manual/source/xpn_viewer.rst Log Message: ----------- triplicates Commit: 6b12d783265172c421a37e224b8adad3f695e245 https://github.com/ehb54/ultrascan3/commit/6b12d783265172c421a37e224b8adad3f695e245 Author: HabGab Date: 2026-04-13 (Mon, 13 Apr 2026) Changed paths: M doc/manual/source/multi-wavelength/mwl_species_fit.rst Log Message: ----------- minor missplacing Commit: c1845c6f4b9734df2f812c0b62d782d4f2609c9a https://github.com/ehb54/ultrascan3/commit/c1845c6f4b9734df2f812c0b62d782d4f2609c9a Author: Haben Gabir Date: 2026-04-13 (Mon, 13 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_analys.rst Log Message: ----------- minor Commit: 999f5967cfac93e336d82d6d37f650a584730945 https://github.com/ehb54/ultrascan3/commit/999f5967cfac93e336d82d6d37f650a584730945 Author: Haben Gabir Date: 2026-04-13 (Mon, 13 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst A doc/manual/source/__pycache__/auto_index.cpython-39.pyc A doc/manual/source/_static/UltraScanIII.pdf M doc/manual/source/buoyancy_editor.rst M doc/manual/source/grid_editor.rst M doc/manual/source/idist_combine.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/solutions/index.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-new.rst M doc/manual/source/vhw_combine.rst Log Message: ----------- ref and doc updates Commit: 5442f4062fa7bdbd225d10d4108a9913de662afe https://github.com/ehb54/ultrascan3/commit/5442f4062fa7bdbd225d10d4108a9913de662afe Author: Haben Gabir Date: 2026-04-13 (Mon, 13 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/2dsa/index.rst A doc/manual/source/_static/images/load_us3.png M doc/manual/source/analyte/analyte_new.rst M doc/manual/source/analyte/analyte_settings.rst M doc/manual/source/astfem_sim.rst M doc/manual/source/buffer/buffer_edit.rst M doc/manual/source/buoyancy_editor.rst M doc/manual/source/combine_models.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/convert.rst M doc/manual/source/experiment/general.rst M doc/manual/source/experiment/rotor.rst M doc/manual/source/experiment/solutions.rst M doc/manual/source/experiment/speeds.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/index.rst M doc/manual/source/ga_initialize.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/index.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/pseudo3d.rst R doc/manual/source/rotor.rst M doc/manual/source/rotor_calibration.rst A doc/manual/source/rotors.rst M doc/manual/source/simparams.rst M doc/manual/source/solutions/solution_edit.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_equiltime.rst M doc/manual/source/vhw_enhanced.rst Log Message: ----------- referencing Commit: 5d940737536ba92999909c398bc2c791d46ffd4d https://github.com/ehb54/ultrascan3/commit/5d940737536ba92999909c398bc2c791d46ffd4d Author: Haben Gabir Date: 2026-04-13 (Mon, 13 Apr 2026) Changed paths: M doc/manual/Makefile M doc/manual/source/common_dialogs.rst M doc/manual/source/convert.rst M doc/manual/source/fe_match/index.rst M doc/manual/source/start_page-new.rst M doc/manual/source/start_page.rst Log Message: ----------- referencing update Commit: 792ea02cbd0b900f1898086c35fa6b3c11e54201 https://github.com/ehb54/ultrascan3/commit/792ea02cbd0b900f1898086c35fa6b3c11e54201 Author: Haben Gabir Date: 2026-04-13 (Mon, 13 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/_static/js/sphinx_highlight.js M doc/manual/source/analyte/analyte_edit.rst M doc/manual/source/buffer/buffer_edit.rst M doc/manual/source/buffer/buffer_new.rst M doc/manual/source/buffer/buffer_settings.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/config.rst M doc/manual/source/dmga_init_constr.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/experiment/range.rst M doc/manual/source/experiment/rotor.rst M doc/manual/source/experiment/solutions.rst M doc/manual/source/experiment/speeds.rst M doc/manual/source/export_legacy.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/gmp/gmp_automation.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/grid_editor.rst M doc/manual/source/multi-wavelength/index.rst M doc/manual/source/multi-wavelength/mwl_species_fit.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/multi-wavelength/mwl_spectra.rst M doc/manual/source/pcsa/pcsa_analys.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/rmsd_query.rst M doc/manual/source/run_details.rst M doc/manual/source/solutions/solution_new.rst M doc/manual/source/solutions/solution_settings.rst M doc/manual/source/start_page-int.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst M doc/manual/source/xpn_viewer.rst Log Message: ----------- reference update 2 Commit: 54a049bf6cfd4facaa834f4e91979253d3aa6b86 https://github.com/ehb54/ultrascan3/commit/54a049bf6cfd4facaa834f4e91979253d3aa6b86 Author: Haben Gabir Date: 2026-04-14 (Tue, 14 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_analys.rst M doc/manual/source/2dsa/2dsa_main.rst A doc/manual/source/_static/images/cmenu_help.png M doc/manual/source/analyte/analyte_edit.rst M doc/manual/source/analyte/analyte_new.rst M doc/manual/source/buffer/buffer_edit.rst M doc/manual/source/buffer/buffer_new.rst M doc/manual/source/buffer/buffer_select.rst M doc/manual/source/buffer/buffer_settings.rst M doc/manual/source/combine_models.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/dmga_init.rst M doc/manual/source/experiment/solutions.rst M doc/manual/source/export_legacy.rst M doc/manual/source/fe_match/fe_dmga_adv.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/ga_initialize.rst M doc/manual/source/idist_combine.rst M doc/manual/source/manage_data.rst M doc/manual/source/multi-wavelength/index.rst M doc/manual/source/multi-wavelength/mwl_species_fit.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_analys.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/rmsd_query.rst M doc/manual/source/solutions/solution_new.rst M doc/manual/source/start_page-int.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/vhw_enhanced.rst Log Message: ----------- sphinx-build -M linkcheck /source /build -q --keep-going + DMGA protocol Commit: 5ec1de61dba0f60ca68a98e66e6f8098e0d70384 https://github.com/ehb54/ultrascan3/commit/5ec1de61dba0f60ca68a98e66e6f8098e0d70384 Author: HabGab Date: 2026-04-14 (Tue, 14 Apr 2026) Changed paths: M gui/us_abstractrotor_gui.h M gui/us_rotor_gui.h Log Message: ----------- manual name change Commit: 73e408bbda42ba6961f01111ffb11b59c8976fce https://github.com/ehb54/ultrascan3/commit/73e408bbda42ba6961f01111ffb11b59c8976fce Author: Haben Gabir Date: 2026-04-14 (Tue, 14 Apr 2026) Changed paths: M doc/manual/source/analysprof_general.rst M doc/manual/source/index.rst M doc/manual/source/us_administrator.rst M doc/manual/source/us_investigator.rst M doc/manual/source/us_project.rst Log Message: ----------- minor updates Commit: aadeecb1340fbe3c58273b592171ad822dbd05dd https://github.com/ehb54/ultrascan3/commit/aadeecb1340fbe3c58273b592171ad822dbd05dd Author: Haben Gabir Date: 2026-04-14 (Tue, 14 Apr 2026) Changed paths: M doc/manual/source/index.rst Log Message: ----------- minor updates in Index Commit: 26b3afbb4f6320ad269fb86433af8187d3a79256 https://github.com/ehb54/ultrascan3/commit/26b3afbb4f6320ad269fb86433af8187d3a79256 Author: Haben Gabir Date: 2026-04-14 (Tue, 14 Apr 2026) Changed paths: A doc/manual/source/_static/images/reporter_comrep.png M doc/manual/source/index.rst M doc/manual/source/reporter.rst Log Message: ----------- These MINOR changes are killing me Commit: c35c8a4a2d552e064e5d40205f75deef685d0d6e https://github.com/ehb54/ultrascan3/commit/c35c8a4a2d552e064e5d40205f75deef685d0d6e Author: Haben Gabir Date: 2026-04-14 (Tue, 14 Apr 2026) Changed paths: M doc/manual/source/fe_match/index.rst Log Message: ----------- Minoooor Commit: abf6f6f3682a1676d7d1e8f7dd0f02419fb1954f https://github.com/ehb54/ultrascan3/commit/abf6f6f3682a1676d7d1e8f7dd0f02419fb1954f Author: alexsav815 Date: 2026-04-15 (Wed, 15 Apr 2026) Changed paths: M utils/us_run_protocol.cpp Log Message: ----------- Merge pull request #409 from ehb54/alexey-dev-issue814 GMP -- additional check for the protocol internals equality before submitting GMP runs: operator(s) Commit: 6bcf83da27c47886d434f95cb5c8b5b393efcc79 https://github.com/ehb54/ultrascan3/commit/6bcf83da27c47886d434f95cb5c8b5b393efcc79 Author: Haben Gabir Date: 2026-04-20 (Mon, 20 Apr 2026) Changed paths: A doc/manual/source/_static/images/us_spectrum-0-upded.png M doc/manual/source/_static/images/us_spectrum-1.png M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_spectrum.rst Log Message: ----------- us_buoyancy introduction, Us_spectrum introduction,images and application updated. Commit: b5159ec368c6454947e70949aaffbdde6b41c221 https://github.com/ehb54/ultrascan3/commit/b5159ec368c6454947e70949aaffbdde6b41c221 Author: Haben Gabir Date: 2026-04-20 (Mon, 20 Apr 2026) Changed paths: M utils/us_run_protocol.cpp Log Message: ----------- Merge branch 'main' into haben/docs-crosslinking Commit: 0d231234973612a639bab8cf3fc26fb81c88717f https://github.com/ehb54/ultrascan3/commit/0d231234973612a639bab8cf3fc26fb81c88717f Author: HabGab Date: 2026-04-20 (Mon, 20 Apr 2026) Changed paths: M doc/manual/Makefile M doc/manual/source/2dsa/2dsa_analys.rst M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/2dsa/index.rst A doc/manual/source/__pycache__/auto_index.cpython-39.pyc A doc/manual/source/_static/UltraScanIII.pdf A doc/manual/source/_static/images/cmenu_help.png A doc/manual/source/_static/images/load_us3.png A doc/manual/source/_static/images/reporter_comrep.png A doc/manual/source/_static/images/us_spectrum-0-upded.png M doc/manual/source/_static/images/us_spectrum-1.png M doc/manual/source/_static/js/sphinx_highlight.js M doc/manual/source/analysprof_general.rst M doc/manual/source/analyte/analyte_edit.rst M doc/manual/source/analyte/analyte_new.rst M doc/manual/source/analyte/analyte_settings.rst M doc/manual/source/astfem_sim.rst M doc/manual/source/buffer/buffer_edit.rst M doc/manual/source/buffer/buffer_new.rst M doc/manual/source/buffer/buffer_select.rst M doc/manual/source/buffer/buffer_settings.rst M doc/manual/source/buoyancy_editor.rst M doc/manual/source/combine_models.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/config.rst M doc/manual/source/convert.rst M doc/manual/source/dmga_init.rst M doc/manual/source/dmga_init_constr.rst M doc/manual/source/experiment/general.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/experiment/range.rst M doc/manual/source/experiment/rotor.rst M doc/manual/source/experiment/solutions.rst M doc/manual/source/experiment/speeds.rst M doc/manual/source/export_legacy.rst M doc/manual/source/fe_match/fe_dmga_adv.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/fe_match/index.rst M doc/manual/source/ga_initialize.rst M doc/manual/source/gmp/gmp_automation.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/grid_editor.rst M doc/manual/source/idist_combine.rst M doc/manual/source/index.rst M doc/manual/source/manage_data.rst M doc/manual/source/multi-wavelength/index.rst M doc/manual/source/multi-wavelength/mwl_species_fit.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/multi-wavelength/mwl_spectra.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_analys.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/pseudo3d.rst M doc/manual/source/reporter.rst M doc/manual/source/rmsd_query.rst R doc/manual/source/rotor.rst M doc/manual/source/rotor_calibration.rst A doc/manual/source/rotors.rst M doc/manual/source/run_details.rst M doc/manual/source/second_moment.rst M doc/manual/source/simparams.rst M doc/manual/source/solutions/index.rst M doc/manual/source/solutions/solution_edit.rst M doc/manual/source/solutions/solution_new.rst M doc/manual/source/solutions/solution_settings.rst M doc/manual/source/start_page-int.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-new.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/us_administrator.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_equiltime.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/us_investigator.rst M doc/manual/source/us_project.rst M doc/manual/source/us_spectrum.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst M doc/manual/source/xpn_viewer.rst M gui/us_abstractrotor_gui.h M gui/us_rotor_gui.h Log Message: ----------- Merge pull request #412 from ehb54/haben/docs-crosslinking Document cross linking, manual help buttons and new pages added. Commit: 47638222ab16a5ea91b3b1574d03c5038374b2a4 https://github.com/ehb54/ultrascan3/commit/47638222ab16a5ea91b3b1574d03c5038374b2a4 Author: Haben Gabir Date: 2026-04-21 (Tue, 21 Apr 2026) Changed paths: M doc/manual/source/start_page-mw.rst Log Message: ----------- replaced old image in doc Commit: 1fece8e1783a00b7b4b2d53c0d3fb24784b20678 https://github.com/ehb54/ultrascan3/commit/1fece8e1783a00b7b4b2d53c0d3fb24784b20678 Author: HabGab Date: 2026-04-21 (Tue, 21 Apr 2026) Changed paths: Log Message: ----------- Merge branch 'main' into haben/docs-crosslinking Commit: c0dbe2538c5177518ec31c51efdbe5540a5df70d https://github.com/ehb54/ultrascan3/commit/c0dbe2538c5177518ec31c51efdbe5540a5df70d Author: HabGab Date: 2026-04-21 (Tue, 21 Apr 2026) Changed paths: M doc/manual/source/start_page-mw.rst Log Message: ----------- Merge pull request #415 from ehb54/haben/docs-crosslinking replaced old image in doc Commit: eca543a22ebb2991eb0b445f72e347063fbc8c72 https://github.com/ehb54/ultrascan3/commit/eca543a22ebb2991eb0b445f72e347063fbc8c72 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page.rst Log Message: ----------- standardize reference section formatting in start_page.rst and start_page-mw.rst Commit: a4f1f53d77b4eb249b8afb6b09bf96f052e25542 https://github.com/ehb54/ultrascan3/commit/a4f1f53d77b4eb249b8afb6b09bf96f052e25542 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- fix VERSION file path, change default version from unknown to 4.1.0-dev, refactor release construction Commit: db21d0c5a194f41886b613e65623c07d2bc40f9d https://github.com/ehb54/ultrascan3/commit/db21d0c5a194f41886b613e65623c07d2bc40f9d Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M utils/us_defines.h Log Message: ----------- add conditional definitions for US_Version and US_Description in us_defines.h Commit: 9cbcea1782add3926f1f936aa6696c0e418a0a33 https://github.com/ehb54/ultrascan3/commit/9cbcea1782add3926f1f936aa6696c0e418a0a33 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M .gitignore Log Message: ----------- add __pycache__ to .gitignore Commit: 102b83ab79cfa7cf1af1b528d6422565dd8b4bba https://github.com/ehb54/ultrascan3/commit/102b83ab79cfa7cf1af1b528d6422565dd8b4bba Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- fix spacing for no local changes Commit: ffce8c0558eef867b786192bfa509ba0b615e715 https://github.com/ehb54/ultrascan3/commit/ffce8c0558eef867b786192bfa509ba0b615e715 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M utils/us_defines.h Log Message: ----------- Remove version and description guards in us_defines.h Commit: 36dc1785d98214993d36bfc9d3b4d8274ddf93ba https://github.com/ehb54/ultrascan3/commit/36dc1785d98214993d36bfc9d3b4d8274ddf93ba Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update path comment for VERSION file location Commit: c20633e9c5e7406950dbc174cae33f60cb8c2d17 https://github.com/ehb54/ultrascan3/commit/c20633e9c5e7406950dbc174cae33f60cb8c2d17 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Remove future annotations import Removed future annotations import from conf.py. Commit: 60491d8fe675ed9c20c175e16153aa1a2f594186 https://github.com/ehb54/ultrascan3/commit/60491d8fe675ed9c20c175e16153aa1a2f594186 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M .gitignore Log Message: ----------- Add __pycache__ to .gitignore Commit: 2cb09af8870f32c9aa5e3463851c91e6741e0bdd https://github.com/ehb54/ultrascan3/commit/2cb09af8870f32c9aa5e3463851c91e6741e0bdd Author: emre brookes Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M .gitignore M doc/manual/source/conf.py M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page.rst Log Message: ----------- Merge pull request #416 from ehb54/lukas/manual_versioning Standardize formatting and update versioning in manual Commit: 2d14470510d03383cc580dc728ceaf34b28a9111 https://github.com/ehb54/ultrascan3/commit/2d14470510d03383cc580dc728ceaf34b28a9111 Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-04-22 (Wed, 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from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Wed Apr 22 18:11:39 2026 From: noreply at github.com (aaron-auc) Date: Wed, 22 Apr 2026 17:11:39 -0700 Subject: [us-commits] [ehb54/ultrascan3] ce0e7b: Merge branch 'main' into 800-enhancement-nightly-b... Message-ID: Branch: refs/heads/800-enhancement-nightly-build-using-vcpkg Home: https://github.com/ehb54/ultrascan3 Commit: ce0e7bc73c888397b643b77a02254123918c717f https://github.com/ehb54/ultrascan3/commit/ce0e7bc73c888397b643b77a02254123918c717f Author: aaron-auc Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M .gitignore M doc/manual/Makefile M doc/manual/source/2dsa/2dsa_analys.rst M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/2dsa/index.rst A doc/manual/source/__pycache__/auto_index.cpython-39.pyc A doc/manual/source/_static/UltraScanIII.pdf A doc/manual/source/_static/images/cmenu_help.png A doc/manual/source/_static/images/load_us3.png A doc/manual/source/_static/images/reporter_comrep.png A doc/manual/source/_static/images/us_spectrum-0-upded.png M doc/manual/source/_static/images/us_spectrum-1.png M doc/manual/source/_static/js/sphinx_highlight.js M doc/manual/source/analysprof_general.rst M doc/manual/source/analyte/analyte_edit.rst M 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doc/manual/source/xpn_viewer.rst M gui/us_abstractrotor_gui.h M gui/us_rotor_gui.h M utils/us_run_protocol.cpp Log Message: ----------- Merge branch 'main' into 800-enhancement-nightly-build-using-vcpkg Commit: b61ed7ce96981f2cb26951cc5d14ba599e34ae18 https://github.com/ehb54/ultrascan3/commit/b61ed7ce96981f2cb26951cc5d14ba599e34ae18 Author: aaron-auc Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: Log Message: ----------- Merge branch '800-enhancement-nightly-build-using-vcpkg' of github.com:ehb54/ultrascan3 into 800-enhancement-nightly-build-using-vcpkg Compare: https://github.com/ehb54/ultrascan3/compare/2d14470510d0...b61ed7ce9698 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Wed Apr 22 18:19:02 2026 From: noreply at github.com (aaron-auc) Date: Wed, 22 Apr 2026 17:19:02 -0700 Subject: [us-commits] [ehb54/ultrascan3] 438ca1: mod: rollback to match main Message-ID: Branch: refs/heads/800-enhancement-nightly-build-using-vcpkg Home: https://github.com/ehb54/ultrascan3 Commit: 438ca1c0535b533e30d747dbfaaea341f80130df https://github.com/ehb54/ultrascan3/commit/438ca1c0535b533e30d747dbfaaea341f80130df Author: aaron-auc Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M .github/workflows/unit-tests-v2.yml Log Message: ----------- mod: rollback to match main To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Sat Apr 25 06:04:28 2026 From: noreply at github.com (Lukas Dobler) Date: Sat, 25 Apr 2026 05:04:28 -0700 Subject: [us-commits] [ehb54/ultrascan3] 79bb84: Ensure zoom check considers spectrogram items in `... Message-ID: Branch: refs/heads/main Home: https://github.com/ehb54/ultrascan3 Commit: 79bb847a03d6a66112ac96beede10610bbba2246 https://github.com/ehb54/ultrascan3/commit/79bb847a03d6a66112ac96beede10610bbba2246 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-16 (Thu, 16 Apr 2026) Changed paths: M gui/us_plot.cpp Log Message: ----------- Ensure zoom check considers spectrogram items in `us_plot.cpp` Commit: 0d3c4779cd3d7e85fc5bc4ad7e449a6afcaf99ff https://github.com/ehb54/ultrascan3/commit/0d3c4779cd3d7e85fc5bc4ad7e449a6afcaf99ff Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-16 (Thu, 16 Apr 2026) Changed paths: M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp Log Message: ----------- Refactor signal-slot connections in `us_pseudo3d_combine.cpp` to use modern `&QButtonGroup::idReleased` syntax. Commit: e3131079c98204bcde4f43e59bc6114c81d4d6bd https://github.com/ehb54/ultrascan3/commit/e3131079c98204bcde4f43e59bc6114c81d4d6bd Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-16 (Thu, 16 Apr 2026) Changed paths: M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp Log Message: ----------- Refactor signal-slot connections in `us_pseudo3d_combine.cpp` to use modern syntax for improved readability and maintainability. Commit: 0d1643338fa17f6186a4ad8679ba4cccf89fd394 https://github.com/ehb54/ultrascan3/commit/0d1643338fa17f6186a4ad8679ba4cccf89fd394 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/Makefile M doc/manual/source/2dsa/2dsa_analys.rst M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/2dsa/index.rst A doc/manual/source/__pycache__/auto_index.cpython-39.pyc A doc/manual/source/_static/UltraScanIII.pdf A doc/manual/source/_static/images/cmenu_help.png A doc/manual/source/_static/images/load_us3.png A doc/manual/source/_static/images/reporter_comrep.png A doc/manual/source/_static/images/us_spectrum-0-upded.png M doc/manual/source/_static/images/us_spectrum-1.png M doc/manual/source/_static/js/sphinx_highlight.js M doc/manual/source/analysprof_general.rst M doc/manual/source/analyte/analyte_edit.rst M doc/manual/source/analyte/analyte_new.rst M doc/manual/source/analyte/analyte_settings.rst M doc/manual/source/astfem_sim.rst M doc/manual/source/buffer/buffer_edit.rst M doc/manual/source/buffer/buffer_new.rst M doc/manual/source/buffer/buffer_select.rst M doc/manual/source/buffer/buffer_settings.rst M doc/manual/source/buoyancy_editor.rst M doc/manual/source/combine_models.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/config.rst M doc/manual/source/convert.rst M doc/manual/source/dmga_init.rst M doc/manual/source/dmga_init_constr.rst M doc/manual/source/experiment/general.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/experiment/range.rst M doc/manual/source/experiment/rotor.rst M doc/manual/source/experiment/solutions.rst M doc/manual/source/experiment/speeds.rst M doc/manual/source/export_legacy.rst M doc/manual/source/fe_match/fe_dmga_adv.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/fe_match/index.rst M doc/manual/source/ga_initialize.rst M doc/manual/source/gmp/gmp_automation.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/grid_editor.rst M doc/manual/source/idist_combine.rst M doc/manual/source/index.rst M doc/manual/source/manage_data.rst M doc/manual/source/multi-wavelength/index.rst M doc/manual/source/multi-wavelength/mwl_species_fit.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/multi-wavelength/mwl_spectra.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_analys.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/pseudo3d.rst M doc/manual/source/reporter.rst M doc/manual/source/rmsd_query.rst R doc/manual/source/rotor.rst M doc/manual/source/rotor_calibration.rst A doc/manual/source/rotors.rst M doc/manual/source/run_details.rst M doc/manual/source/second_moment.rst M doc/manual/source/simparams.rst M doc/manual/source/solutions/index.rst M doc/manual/source/solutions/solution_edit.rst M doc/manual/source/solutions/solution_new.rst M doc/manual/source/solutions/solution_settings.rst M doc/manual/source/start_page-int.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-new.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/us_administrator.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_equiltime.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/us_investigator.rst M doc/manual/source/us_project.rst M doc/manual/source/us_spectrum.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst M doc/manual/source/xpn_viewer.rst M gui/us_abstractrotor_gui.h M gui/us_rotor_gui.h Log Message: ----------- Merge branch 'main' into lukas/us_pseudo3d_combine Commit: 8cf8988f671379dcf266a35155e091020469e547 https://github.com/ehb54/ultrascan3/commit/8cf8988f671379dcf266a35155e091020469e547 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M programs/us_2dsa/us_show_norm.cpp M programs/us_density_match/us_density_match.cpp M programs/us_ga_init/us_ga_init.cpp M programs/us_integral/us_integral.cpp M programs/us_modelmetrics/us_modelmetrics.cpp M programs/us_pcsa/us_analysis_control_pc.cpp Log Message: ----------- Refactor signal-slot connections across multiple modules to use modern syntax for improved readability and maintainability. Commit: e55fdb6a821372263be14ebfd0bd4debd621c904 https://github.com/ehb54/ultrascan3/commit/e55fdb6a821372263be14ebfd0bd4debd621c904 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M gui/us_plot.cpp Log Message: ----------- Ensure axis checks account for spectrogram items in `us_plot.cpp` Commit: 33967fac5d6dd4415b67c2e8bc928de7aad9504b https://github.com/ehb54/ultrascan3/commit/33967fac5d6dd4415b67c2e8bc928de7aad9504b Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M programs/us_pcsa/us_analysis_control_pc.cpp Log Message: ----------- Refactor signal-slot connections in `us_analysis_control_pc.cpp` to use modern syntax for improved readability and maintainability. Commit: 3c2f9d3ede41ffdcd79d070e45afb8a238e729fb https://github.com/ehb54/ultrascan3/commit/3c2f9d3ede41ffdcd79d070e45afb8a238e729fb Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp Log Message: ----------- Simplify lambda expressions in `us_pseudo3d_combine.cpp` by removing redundant `&` capture. Commit: eba2b0e533d5a81cad63c0edd5319256ba404cdd https://github.com/ehb54/ultrascan3/commit/eba2b0e533d5a81cad63c0edd5319256ba404cdd Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M .gitignore M doc/manual/source/conf.py M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page.rst Log Message: ----------- Merge branch 'main' into lukas/us_pseudo3d_combine Commit: bf1f52b701e7d998a5d22f3fb3cfac685fe25b11 https://github.com/ehb54/ultrascan3/commit/bf1f52b701e7d998a5d22f3fb3cfac685fe25b11 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-25 (Sat, 25 Apr 2026) Changed paths: M gui/us_plot.cpp M programs/us_2dsa/us_show_norm.cpp M programs/us_density_match/us_density_match.cpp M programs/us_ga_init/us_ga_init.cpp M programs/us_integral/us_integral.cpp M programs/us_modelmetrics/us_modelmetrics.cpp M programs/us_pcsa/us_analysis_control_pc.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp Log Message: ----------- Merge pull request #413 from ehb54/lukas/us_pseudo3d_combine Lukas/us pseudo3d combine Compare: https://github.com/ehb54/ultrascan3/compare/2cb09af8870f...bf1f52b701e7 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Sat Apr 25 06:04:31 2026 From: noreply at github.com (Lukas Dobler) Date: Sat, 25 Apr 2026 05:04:31 -0700 Subject: [us-commits] [ehb54/ultrascan3] Message-ID: Branch: refs/heads/lukas/us_pseudo3d_combine Home: https://github.com/ehb54/ultrascan3 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Sun Apr 26 00:39:55 2026 From: noreply at github.com (Lukas Dobler) Date: Sat, 25 Apr 2026 23:39:55 -0700 Subject: [us-commits] [ehb54/ultrascan3] Message-ID: Branch: refs/heads/lukas/program_search Home: https://github.com/ehb54/ultrascan3 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Sun Apr 26 05:12:08 2026 From: noreply at github.com (Lukas Dobler) Date: Sun, 26 Apr 2026 04:12:08 -0700 Subject: [us-commits] [ehb54/ultrascan3] bcba62: Qt6 no longer supports the QString().sprintf() fun... Message-ID: Branch: refs/heads/lukas/somo-cmake Home: https://github.com/ehb54/ultrascan3 Commit: bcba62aaaf014951e3bad0f773d2affc10e53f5e https://github.com/ehb54/ultrascan3/commit/bcba62aaaf014951e3bad0f773d2affc10e53f5e Author: samo38 Date: 2025-07-21 (Mon, 21 Jul 2025) Changed paths: M utils/us_buffer.cpp M utils/us_cfa_data.cpp M utils/us_datafiles.cpp M utils/us_gzip.cpp M utils/us_lamm_astfvm.cpp M utils/us_license_t.cpp M utils/us_matrix.cpp M utils/us_model.cpp M utils/us_pcsa_modelrec.cpp M utils/us_project.cpp M utils/us_rotor.cpp M utils/us_run_protocol.cpp M utils/us_simparms.cpp M utils/us_tar.cpp M utils/us_time_state.cpp M utils/us_util.cpp M utils/us_xpn_data.cpp Log Message: ----------- Qt6 no longer supports the QString().sprintf() function. Fixed this issue by replacing it with proper functions Commit: 193bcc32a83df8e1f95d41e9dae11a6434da38e7 https://github.com/ehb54/ultrascan3/commit/193bcc32a83df8e1f95d41e9dae11a6434da38e7 Author: samo38 Date: 2025-07-21 (Mon, 21 Jul 2025) Changed paths: M utils/us_dataIO.cpp Log Message: ----------- replaced QString::SkipEmptyParts with Qt::SkipEmptyParts Commit: 3d82f0921ddc17663db935727e74ac7285150aa4 https://github.com/ehb54/ultrascan3/commit/3d82f0921ddc17663db935727e74ac7285150aa4 Author: samo38 Date: 2025-07-21 (Mon, 21 Jul 2025) Changed paths: M utils/us_gzip.cpp Log Message: ----------- replaced toTime_t() with toSecsSinceEpoch() in QDateTime Commit: 9842f68622b8822f47a5c2878669890685348af7 https://github.com/ehb54/ultrascan3/commit/9842f68622b8822f47a5c2878669890685348af7 Author: samo38 Date: 2025-07-21 (Mon, 21 Jul 2025) Changed paths: M utils/us_gzip.cpp Log Message: ----------- c++17 doesn't support register Commit: 68bfa3350ea117e6c8b2a8222fa5c59e2b453cd8 https://github.com/ehb54/ultrascan3/commit/68bfa3350ea117e6c8b2a8222fa5c59e2b453cd8 Author: samo38 Date: 2025-07-21 (Mon, 21 Jul 2025) Changed paths: M utils/us_cfa_data.cpp M utils/us_memory.cpp M utils/us_project.cpp M utils/us_report.cpp M utils/us_rotor.cpp M utils/us_settings.cpp M utils/us_solution.cpp Log Message: ----------- replaced QRegExp with QRegularExpression Commit: c50c776f797e411dfdf83c69446cba8b40e1a744 https://github.com/ehb54/ultrascan3/commit/c50c776f797e411dfdf83c69446cba8b40e1a744 Author: samo38 Date: 2025-07-21 (Mon, 21 Jul 2025) Changed paths: M utils/us_local_server.h Log Message: ----------- add #include to us_local_server.h Commit: 2b2e229139b83fd1e2ce99edf290a820df77fe46 https://github.com/ehb54/ultrascan3/commit/2b2e229139b83fd1e2ce99edf290a820df77fe46 Author: samo38 Date: 2025-07-21 (Mon, 21 Jul 2025) Changed paths: M utils/us_cfa_data.cpp Log Message: ----------- fixed the issue with adding an integer to a character Commit: 84254a6aa4322f882cea6d15ebaa6375c1dd1220 https://github.com/ehb54/ultrascan3/commit/84254a6aa4322f882cea6d15ebaa6375c1dd1220 Author: samo38 Date: 2025-07-21 (Mon, 21 Jul 2025) Changed paths: M utils/us_lamm_astfvm.cpp Log Message: ----------- replaced QTime with QElapsedTimer Commit: 4469af92492851be98df19fc8d20cbb65cf499f8 https://github.com/ehb54/ultrascan3/commit/4469af92492851be98df19fc8d20cbb65cf499f8 Author: samo38 Date: 2025-07-22 (Tue, 22 Jul 2025) Changed paths: M utils/us_math2.cpp M utils/us_math2.h Log Message: ----------- Replace qrand/qsrand with std::mt19937 from C++11 library because qrand/qsrand are not supported in Qt.6. Mersenne Twister 19937 generator produces thread-safe random number with quality and performance. QTime::currentTime() is replaced with std::chrono::system_clock to generated an unique random seed with higher precision. std::uniform_real_distribution coupled with std::mt19937 is used to generate uniformly distributed random numbers. Commit: 8027aae3133b42fd97a3595a932af099e20d12f9 https://github.com/ehb54/ultrascan3/commit/8027aae3133b42fd97a3595a932af099e20d12f9 Author: samo38 Date: 2025-07-22 (Tue, 22 Jul 2025) Changed paths: M utils/us_ana_profile.cpp Log Message: ----------- QStringRef is deprecated in Qt.6 and is replaced with QStringView Commit: c03e53c33a046303a0973d609fb2077954717ba0 https://github.com/ehb54/ultrascan3/commit/c03e53c33a046303a0973d609fb2077954717ba0 Author: samo38 Date: 2025-07-22 (Tue, 22 Jul 2025) Changed paths: M utils/us_astfem_rsa.cpp M utils/us_hardware.cpp M utils/us_xpn_data.cpp Log Message: ----------- replace qSor with str::sort for vectors of int, double, and QString Commit: 3bd31299ae152f354f67673997d47527ee13ab0f https://github.com/ehb54/ultrascan3/commit/3bd31299ae152f354f67673997d47527ee13ab0f Author: samo38 Date: 2025-07-22 (Tue, 22 Jul 2025) Changed paths: M utils/us_solve_sim.cpp Log Message: ----------- sorting a vector of US_ZSolute using std::sort is tricky. we should decide what parameter of the US_ZSolute should be used to sort the vector based on. US_ZSolute has x, y, z, c where x, y, and z are the parameters used to make grids for 2DSA. For example s, ff0, and vbar. So they change by analysis. c is the concetration of the species which is used here to sort the sim_vals.zsolutes. Commit: 7a6584a8150598a709a9e5cbdd5f057d1822013e https://github.com/ehb54/ultrascan3/commit/7a6584a8150598a709a9e5cbdd5f057d1822013e Author: samo38 Date: 2025-07-22 (Tue, 22 Jul 2025) Changed paths: M utils/us_solve_sim.cpp Log Message: ----------- s values of the US_Solute are used to sort the sim_vals.solutes. Commit: e057219f4688995edd4d1e7a70929753cceeaa37 https://github.com/ehb54/ultrascan3/commit/e057219f4688995edd4d1e7a70929753cceeaa37 Author: samo38 Date: 2025-07-22 (Tue, 22 Jul 2025) Changed paths: M utils/us_xpn_data.cpp Log Message: ----------- wrong type casting Commit: 9bf93b888a0c6283dd4fe50f27a24e7e36847380 https://github.com/ehb54/ultrascan3/commit/9bf93b888a0c6283dd4fe50f27a24e7e36847380 Author: samo38 Date: 2025-07-22 (Tue, 22 Jul 2025) Changed paths: M utils/us_timer.cpp M utils/us_timer.h Log Message: ----------- replace QTime with QElapsedTimer in US_Timer Commit: aa6733cf95d1f98e40f11045c996c2507121e7a7 https://github.com/ehb54/ultrascan3/commit/aa6733cf95d1f98e40f11045c996c2507121e7a7 Author: samo38 Date: 2025-07-22 (Tue, 22 Jul 2025) Changed paths: M utils/us_crypto.cpp Log Message: ----------- replace qrand and qsrand with std random generator in US_Crypto Commit: 2b97df7f65bfc7e8254d33a7e7e76b1cd949f2ef https://github.com/ehb54/ultrascan3/commit/2b97df7f65bfc7e8254d33a7e7e76b1cd949f2ef Author: samo38 Date: 2025-07-22 (Tue, 22 Jul 2025) Changed paths: M utils/us_stiffbase.h Log Message: ----------- remove unit macro and instead include Commit: 6adbbd87bf8462b30588b1c1a70f363f5e33a79f https://github.com/ehb54/ultrascan3/commit/6adbbd87bf8462b30588b1c1a70f363f5e33a79f Author: samo38 Date: 2025-07-22 (Tue, 22 Jul 2025) Changed paths: M utils/us_db2.cpp Log Message: ----------- US_DB2::value : we must cast char** to QVarient. QVariant::Invalid is deprecated and replaced with QVariant() Commit: 8d6cadc10bcd7d58d1692a6622ecfe2213ce145d https://github.com/ehb54/ultrascan3/commit/8d6cadc10bcd7d58d1692a6622ecfe2213ce145d Author: samo38 Date: 2025-07-22 (Tue, 22 Jul 2025) Changed paths: M utils/us_buffer.cpp Log Message: ----------- US_BufferComponent::saveToDB should return an Int. I assumed it should be idBufferComponent after trying to save a new buffer component in DB Commit: 8c54b51cc75babc28615af49a56735cebb58820a https://github.com/ehb54/ultrascan3/commit/8c54b51cc75babc28615af49a56735cebb58820a Author: samo38 Date: 2025-07-22 (Tue, 22 Jul 2025) Changed paths: M utils/us_math2.cpp Log Message: ----------- US_Math2::randomize : start with std::random_device to make a random seed. then mixed it with current time to increase the entropy. add process ID. it is important for MPI runs Commit: 1e08a16239893c26e56a4ec7a75b078f5e33780a https://github.com/ehb54/ultrascan3/commit/1e08a16239893c26e56a4ec7a75b078f5e33780a Author: samo38 Date: 2025-07-23 (Wed, 23 Jul 2025) Changed paths: M utils/us_ana_profile.cpp Log Message: ----------- fixed indentation and not using curly braces for if blocks Commit: 5ed9c7f4aaf2812f54ad9f20088fad994ffe685e https://github.com/ehb54/ultrascan3/commit/5ed9c7f4aaf2812f54ad9f20088fad994ffe685e Author: Saeed Mortezazadeh <49119048+samo38 at users.noreply.github.com> Date: 2025-07-23 (Wed, 23 Jul 2025) Changed paths: M utils/us_project.cpp Log Message: ----------- Update utils/us_project.cpp Fixed by Lukas. Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com> Commit: e2f82f84ce3688e18ad64b185291442e9ea94c76 https://github.com/ehb54/ultrascan3/commit/e2f82f84ce3688e18ad64b185291442e9ea94c76 Author: Saeed Mortezazadeh <49119048+samo38 at users.noreply.github.com> Date: 2025-07-23 (Wed, 23 Jul 2025) Changed paths: M utils/us_report.cpp Log Message: ----------- Update utils/us_report.cpp fixed by Lukas. Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com> Commit: 40e8280789baf4229426227a497068c6b39ba9f5 https://github.com/ehb54/ultrascan3/commit/40e8280789baf4229426227a497068c6b39ba9f5 Author: samo38 Date: 2025-07-23 (Wed, 23 Jul 2025) Changed paths: M utils/us_project.cpp M utils/us_report.cpp Log Message: ----------- Merge remote-tracking branch 'origin/utils_with_qt6' into utils_with_qt6 Commit: 2b557d83d4e0c49fb729e8e8674e6743c4aecc15 https://github.com/ehb54/ultrascan3/commit/2b557d83d4e0c49fb729e8e8674e6743c4aecc15 Author: Saeed Mortezazadeh <49119048+samo38 at users.noreply.github.com> Date: 2025-07-23 (Wed, 23 Jul 2025) Changed paths: M utils/us_report.cpp Log Message: ----------- Update utils/us_report.cpp fixed by Lukas! Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com> Commit: c6894a31494ac44b463878e61992d5b5b46bdf06 https://github.com/ehb54/ultrascan3/commit/c6894a31494ac44b463878e61992d5b5b46bdf06 Author: Saeed Mortezazadeh <49119048+samo38 at users.noreply.github.com> Date: 2025-07-23 (Wed, 23 Jul 2025) Changed paths: M utils/us_report.cpp Log Message: ----------- Update utils/us_report.cpp fixed by Lukas Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com> Commit: 56fd87c26d16af03531c1b6170fdeb943b183fe3 https://github.com/ehb54/ultrascan3/commit/56fd87c26d16af03531c1b6170fdeb943b183fe3 Author: Saeed Mortezazadeh <49119048+samo38 at users.noreply.github.com> Date: 2025-07-23 (Wed, 23 Jul 2025) Changed paths: M utils/us_report.cpp Log Message: ----------- Update utils/us_report.cpp fixed by Lukas! Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com> Commit: bf63e374e7bb523a3115699f24919e06d6d969d5 https://github.com/ehb54/ultrascan3/commit/bf63e374e7bb523a3115699f24919e06d6d969d5 Author: Saeed Mortezazadeh <49119048+samo38 at users.noreply.github.com> Date: 2025-07-23 (Wed, 23 Jul 2025) Changed paths: M utils/us_rotor.cpp Log Message: ----------- Update utils/us_rotor.cpp fixed by Lukas! Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com> Commit: 6a79cd3b2725e774c7baef8629a054c7d1d69f89 https://github.com/ehb54/ultrascan3/commit/6a79cd3b2725e774c7baef8629a054c7d1d69f89 Author: samo38 Date: 2025-07-23 (Wed, 23 Jul 2025) Changed paths: M utils/us_report.cpp M utils/us_rotor.cpp Log Message: ----------- Merge remote-tracking branch 'origin/utils_with_qt6' into utils_with_qt6 Commit: fe388f070d81a3b002b68271f9e02412257c6566 https://github.com/ehb54/ultrascan3/commit/fe388f070d81a3b002b68271f9e02412257c6566 Author: samo38 Date: 2025-07-23 (Wed, 23 Jul 2025) Changed paths: M utils/us_report.cpp M utils/us_report.h Log Message: ----------- us_report: Move regex to header for reuse across methods Commit: 27c40211dc61cbcfab1ddb4f69aa485d05752199 https://github.com/ehb54/ultrascan3/commit/27c40211dc61cbcfab1ddb4f69aa485d05752199 Author: samo38 Date: 2025-07-23 (Wed, 23 Jul 2025) Changed paths: M utils/us_util.cpp Log Message: ----------- us_util.cpp: used a clear version of the mid function of QStringList Commit: ca93d830d3b4efac58b7dccdd7aed4d78a29c4da https://github.com/ehb54/ultrascan3/commit/ca93d830d3b4efac58b7dccdd7aed4d78a29c4da Author: samo38 Date: 2025-07-23 (Wed, 23 Jul 2025) Changed paths: M utils/us_solve_sim.cpp Log Message: ----------- us_solve_sim.cpp: removed lambda function from std:sort since operator< is defined in the header file Commit: f7ca0ab961c14253d0133556f4c8b7861f88e13b https://github.com/ehb54/ultrascan3/commit/f7ca0ab961c14253d0133556f4c8b7861f88e13b Author: samo38 Date: 2025-07-23 (Wed, 23 Jul 2025) Changed paths: M utils/us_matrix.cpp M utils/us_model.cpp Log Message: ----------- fixed the indentations and added braced to the 'for' block Commit: cf21afee5788075f15e05bd7570b6c4fc9039efe https://github.com/ehb54/ultrascan3/commit/cf21afee5788075f15e05bd7570b6c4fc9039efe Author: samo38 Date: 2025-07-23 (Wed, 23 Jul 2025) Changed paths: M utils/us_analyte.cpp Log Message: ----------- toLower() method of QString doesn't lower the string in place. it returns another string Commit: 67451f3508ad69c38929872ef40a5879cdf64c72 https://github.com/ehb54/ultrascan3/commit/67451f3508ad69c38929872ef40a5879cdf64c72 Author: samo38 Date: 2025-07-23 (Wed, 23 Jul 2025) Changed paths: M utils/us_cfa_data.cpp Log Message: ----------- us_cfa_data.cpp: "executing query on QSqlDatabase is deprecated since Qt 6.6 and replace with QSqlQuery::exec() which is also supported by Qt 5.15 Commit: e7144b1a1b562e27c54200ac0f49145a63741386 https://github.com/ehb54/ultrascan3/commit/e7144b1a1b562e27c54200ac0f49145a63741386 Author: samo38 Date: 2025-07-23 (Wed, 23 Jul 2025) Changed paths: M utils/us_xpn_data.cpp Log Message: ----------- us_xpn_data.cpp: executing a query on QSqlDatabase is deprecated since Qt 6.6 and replace with QSqlQuery::exec() which is also supported by Qt 5.15 Commit: 6f29f8bb4063ef8150d630adc11c300adf4e69e8 https://github.com/ehb54/ultrascan3/commit/6f29f8bb4063ef8150d630adc11c300adf4e69e8 Author: samo38 Date: 2025-07-29 (Tue, 29 Jul 2025) Changed paths: M utils/us_ana_profile.cpp M utils/us_xpn_data.cpp Log Message: ----------- fixed indentations Commit: 576eb10a22e9eb49bf735d383045dd6393dcfa08 https://github.com/ehb54/ultrascan3/commit/576eb10a22e9eb49bf735d383045dd6393dcfa08 Author: samo38 Date: 2025-07-29 (Tue, 29 Jul 2025) Changed paths: M utils/us_link_ssl.cpp Log Message: ----------- us_link_ssl.cpp: simplified() returns a new QString and it is used to rewrite the client_name Commit: 13d43bdb65ac6611ad9b988e2ad7436b880b54f8 https://github.com/ehb54/ultrascan3/commit/13d43bdb65ac6611ad9b988e2ad7436b880b54f8 Author: samo38 Date: 2025-07-29 (Tue, 29 Jul 2025) Changed paths: M utils/us_xpn_data.cpp Log Message: ----------- us_xpn_data.cpp: comment out unused variables Commit: aa5f6484e899c0c16449ced5724171f2423b9091 https://github.com/ehb54/ultrascan3/commit/aa5f6484e899c0c16449ced5724171f2423b9091 Author: samo38 Date: 2025-07-29 (Tue, 29 Jul 2025) Changed paths: M utils/us_stiffbase.h Log Message: ----------- us_stiffbase.h: define unit instead of including whole Commit: 183143d228bceca4560f98403748b98da71763e4 https://github.com/ehb54/ultrascan3/commit/183143d228bceca4560f98403748b98da71763e4 Author: samo38 Date: 2025-07-29 (Tue, 29 Jul 2025) Changed paths: M utils/us_hydrosim.h Log Message: ----------- us_hydrosim.h: wrong macro definition Commit: 1a25f5daf6d9914b1722f59340428b1cf6204286 https://github.com/ehb54/ultrascan3/commit/1a25f5daf6d9914b1722f59340428b1cf6204286 Author: samo38 Date: 2025-07-30 (Wed, 30 Jul 2025) Changed paths: M utils/us_ana_profile.cpp M utils/us_ana_profile.h M utils/us_analyte.cpp M utils/us_analyte.h M utils/us_archive.cpp M utils/us_archive.h M utils/us_astfem_math.cpp M utils/us_astfem_math.h M utils/us_astfem_rsa.cpp M utils/us_astfem_rsa.h M utils/us_buffer.cpp M utils/us_buffer.h M utils/us_cfa_data.cpp M utils/us_cfa_data.h M utils/us_constants.cpp M utils/us_constants.h M utils/us_crc.h M utils/us_crypto.h M utils/us_csv_data.cpp M utils/us_csv_data.h M utils/us_dataIO.cpp M utils/us_dataIO.h M utils/us_datafiles.cpp M utils/us_datafiles.h M utils/us_db2.cpp M utils/us_db2.h M utils/us_dmga_constr.cpp M utils/us_dmga_constr.h M utils/us_eprofile.cpp M utils/us_eprofile.h M utils/us_geturl.cpp M utils/us_geturl.h M utils/us_global.cpp M utils/us_global.h M utils/us_gzip.cpp M utils/us_gzip.h M utils/us_hardware.cpp M utils/us_hardware.h M utils/us_http_post.h M utils/us_hydrosim.h M utils/us_lamm_astfvm.cpp M utils/us_lamm_astfvm.h M utils/us_license_t.cpp M utils/us_license_t.h M utils/us_link_ssl.cpp M utils/us_link_ssl.h M utils/us_lm.cpp M utils/us_local_server.cpp M utils/us_local_server.h M utils/us_math2.cpp M utils/us_math2.h M utils/us_matrix.cpp M utils/us_matrix.h M utils/us_memory.cpp M utils/us_memory.h M utils/us_model.cpp M utils/us_model.h M utils/us_noise.cpp M utils/us_noise.h M utils/us_pcsa_modelrec.cpp M utils/us_pcsa_modelrec.h M utils/us_project.cpp M utils/us_project.h M utils/us_protocol_util.cpp M utils/us_protocol_util.h M utils/us_report.cpp M utils/us_report.h M utils/us_report_gmp.cpp M utils/us_rotor.cpp M utils/us_rotor.h M utils/us_run_protocol.cpp M utils/us_run_protocol.h M utils/us_settings.cpp M utils/us_settings.h M utils/us_simparms.h M utils/us_sleep.h M utils/us_solute.h M utils/us_solution.cpp M utils/us_solution_vals.cpp M utils/us_solution_vals.h M utils/us_solve_sim.cpp M utils/us_solve_sim.h M utils/us_stiffbase.cpp M utils/us_stiffbase.h M utils/us_tar.cpp M utils/us_tar.h M utils/us_time_state.cpp M utils/us_time_state.h M utils/us_timer.h M utils/us_util.cpp M utils/us_util.h M utils/us_vector.h M utils/us_xpn_data.cpp M utils/us_xpn_data.h M utils/us_zsolute.h Log Message: ----------- removed #include and included only libraraies that are needed Commit: 2fe76586f9e2a98de89c1d6bc06a0022bdb059bf https://github.com/ehb54/ultrascan3/commit/2fe76586f9e2a98de89c1d6bc06a0022bdb059bf Author: samo38 Date: 2025-08-01 (Fri, 01 Aug 2025) Changed paths: M utils/libus_utils.pro M utils/us_ana_profile.cpp M utils/us_ana_profile.h M utils/us_analyte.cpp M utils/us_analyte.h M utils/us_archive.cpp M utils/us_archive.h M utils/us_astfem_math.cpp M utils/us_astfem_math.h M utils/us_astfem_rsa.cpp M utils/us_astfem_rsa.h M utils/us_buffer.cpp M utils/us_buffer.h M utils/us_cfa_data.cpp M utils/us_cfa_data.h M utils/us_constants.cpp M utils/us_constants.h M utils/us_crc.cpp M utils/us_crc.h M utils/us_crypto.cpp M utils/us_crypto.h M utils/us_csv_data.cpp M utils/us_csv_data.h M utils/us_dataIO.cpp M utils/us_dataIO.h M utils/us_datafiles.cpp M utils/us_datafiles.h M utils/us_db2.cpp M utils/us_db2.h M utils/us_dmga_constr.cpp M utils/us_dmga_constr.h M utils/us_eprofile.cpp M utils/us_extern.h M utils/us_geturl.cpp M utils/us_geturl.h M utils/us_global.cpp M utils/us_global.h M utils/us_gzip.cpp M utils/us_gzip.h M utils/us_hardware.cpp M utils/us_http_post.h M utils/us_hydrosim.cpp M utils/us_hydrosim.h M utils/us_lamm_astfvm.cpp M utils/us_license_t.cpp M utils/us_license_t.h M utils/us_link_ssl.cpp M utils/us_link_ssl.h M utils/us_local_server.cpp M utils/us_local_server.h M utils/us_math2.cpp M utils/us_matrix.cpp M utils/us_matrix.h M utils/us_memory.cpp M utils/us_model.cpp M utils/us_model.h M utils/us_noise.cpp M utils/us_pcsa_modelrec.cpp M utils/us_project.cpp M utils/us_project.h M utils/us_protocol_util.cpp M utils/us_report.cpp M utils/us_report.h M utils/us_report_gmp.cpp M utils/us_rotor.cpp M utils/us_rotor.h M utils/us_run_protocol.cpp M utils/us_run_protocol.h M utils/us_settings.cpp M utils/us_settings.h M utils/us_simparms.cpp M utils/us_simparms.h M utils/us_solute.cpp M utils/us_solute.h M utils/us_solution.cpp M utils/us_solution_vals.cpp M utils/us_solve_sim.cpp M utils/us_solve_sim.h M utils/us_stiffbase.cpp M utils/us_stiffbase.h M utils/us_tar.cpp M utils/us_tar.h M utils/us_time_state.cpp M utils/us_time_state.h M utils/us_timer.cpp M utils/us_timer.h M utils/us_util.cpp M utils/us_util.h A utils/us_utils_qt.h M utils/us_vector.cpp M utils/us_vector.h M utils/us_xpn_data.cpp M utils/us_xpn_data.h M utils/us_zsolute.cpp Log Message: ----------- utils: define a new header file named us_utils_qt.h that includes all necessary qt libs needed for utils programs. Commit: 5735f4b7432adf3550754e00a6bb68c31620082d https://github.com/ehb54/ultrascan3/commit/5735f4b7432adf3550754e00a6bb68c31620082d Author: samo38 Date: 2025-08-01 (Fri, 01 Aug 2025) Changed paths: M utils/us_astfem_math.cpp M utils/us_astfem_rsa.h M utils/us_simparms.cpp Log Message: ----------- avoid redefining DbgLv Commit: df38a513d0b2e3777b0eb40271eaa9dcbdd91942 https://github.com/ehb54/ultrascan3/commit/df38a513d0b2e3777b0eb40271eaa9dcbdd91942 Author: samo38 Date: 2025-08-01 (Fri, 01 Aug 2025) Changed paths: M gui/us_run_details2.cpp M programs/us_dcdt/us_dcdt.cpp M programs/us_density_match/us_density_match.cpp M programs/us_export_legacy/us_export.cpp M programs/us_ga_init/us_ga_init.cpp M programs/us_globalequil/us_eqfit_control.cpp M programs/us_globalequil/us_eqhistogram.cpp M programs/us_globalequil/us_eqmath.cpp M programs/us_globalequil/us_eqreporter.cpp M programs/us_globalequil/us_fit_worker.cpp M programs/us_globalequil/us_globalequil.cpp M programs/us_modelmetrics/us_modelmetrics.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp M programs/us_vhw_enhanced/us_distrib_plot.cpp M utils/us_astfem_math.cpp M utils/us_math2.h M utils/us_solve_sim.cpp Log Message: ----------- removed min/max macros from us_math2.h and replaced them with std ones everywhere it is called in the gui and programs. Commit: 149192ffd8bfd877414dc7bc60ce83e28f77c861 https://github.com/ehb54/ultrascan3/commit/149192ffd8bfd877414dc7bc60ce83e28f77c861 Author: Saeed Date: 2025-08-02 (Sat, 02 Aug 2025) Changed paths: M programs/us_integral/us_integral.cpp M utils/us_astfem_math.cpp M utils/us_solve_sim.cpp M utils/us_utils_qt.h Log Message: ----------- replaced min/max and std::min/max with qMin/qMax in utils Commit: 99328607f509f3624ae4bc675d7661cc8e8fc6f3 https://github.com/ehb54/ultrascan3/commit/99328607f509f3624ae4bc675d7661cc8e8fc6f3 Author: Saeed Date: 2025-08-02 (Sat, 02 Aug 2025) Changed paths: M gui/us_analysis_base2.cpp M gui/us_extinctfitter_gui.cpp M gui/us_extinction_gui.cpp M gui/us_predict1.cpp M gui/us_run_details2.cpp Log Message: ----------- replaced min/max and std::min/max with qMin/qMax in libgui Commit: fd828f5d6b6dee18437ae035e4deda5963b37160 https://github.com/ehb54/ultrascan3/commit/fd828f5d6b6dee18437ae035e4deda5963b37160 Author: Saeed Date: 2025-08-02 (Sat, 02 Aug 2025) Changed paths: M programs/us_2dsa/us_2dsa.cpp M programs/us_2dsa/us_show_norm.cpp M programs/us_buoyancy/us_buoyancy.cpp M programs/us_dcdt/us_dcdt.cpp M programs/us_density_match/us_density_match.cpp M programs/us_export_legacy/us_export.cpp M programs/us_fematch/us_fematch.cpp M programs/us_ga_init/us_ga_init.cpp M programs/us_globalequil/us_eqfit_control.cpp M programs/us_globalequil/us_eqhistogram.cpp M programs/us_globalequil/us_eqmath.cpp M programs/us_globalequil/us_eqmodel_control.cpp M programs/us_globalequil/us_eqreporter.cpp M programs/us_globalequil/us_fit_worker.cpp M programs/us_globalequil/us_globalequil.cpp M programs/us_integral/us_integral.cpp M programs/us_modelmetrics/us_modelmetrics.cpp M programs/us_pcsa/us_pcsa.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_vhw_enhanced/us_distrib_plot.cpp M programs/us_vhw_enhanced/us_vhw_enhanced.cpp Log Message: ----------- replaced min/max and std::min/max with qMin/qMax in the programs Commit: ece28622af778b3b936f5dee16ccac7d5ea2a06b https://github.com/ehb54/ultrascan3/commit/ece28622af778b3b936f5dee16ccac7d5ea2a06b Author: Saeed Date: 2025-08-04 (Mon, 04 Aug 2025) Changed paths: M utils/us_solve_sim.cpp M utils/us_util.cpp M utils/us_xpn_data.cpp Log Message: ----------- replace QString().sprintf() with Qt methods Commit: 043d903895d150b1718f1de85a5105355f9fc7a6 https://github.com/ehb54/ultrascan3/commit/043d903895d150b1718f1de85a5105355f9fc7a6 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2025-10-24 (Fri, 24 Oct 2025) Changed paths: M .github/workflows/codeql-analysis.yml A .github/workflows/static-analysis.yml A .github/workflows/unit-tests.yml M .gitignore M CMakeLists.txt M README.md A admin/cmake/FindQwt.cmake A admin/cmake/us_version.h.in M admin/codeql/docker/local.pri.gui M admin/codeql/docker/local.pri.mpi M admin/codeql/docker/local.pri.somo A admin/pam/pam_no_ad/Makefile A admin/pam/pam_no_ad/README.md A admin/pam/pam_no_ad/files/mariadb A admin/pam/pam_no_ad/files/php A admin/pam/pam_no_ad/files/sssd.conf A admin/pam/pam_no_ad/files/system-auth-nosss A admin/pam/pam_no_ad/pam_auth_pamtester.php A admin/pam/pam_no_ad/pam_auth_test.php M admin/release/buildpkg.pl M admin/release/centos7/Dockerfile M admin/release/redhat/Dockerfile M admin/release/ubuntu/Dockerfile M admin/release/ubuntu_qt6/Dockerfile A admin/test/docker/Dockerfile R doc/manual/README A doc/manual/README.md M doc/manual/advanced_config.body A gui/CMakeLists.txt M gui/us_abstractrotor_gui.cpp M gui/us_analysis_base2.cpp M gui/us_analyte_gui.cpp M gui/us_associations_gui.cpp M gui/us_buffer_gui.cpp M gui/us_choice.cpp M gui/us_combined_plots_parms_gui.cpp M gui/us_csv_loader.cpp M gui/us_data_loader.cpp M gui/us_editor.h M gui/us_editor_gui.cpp M gui/us_extinctfitter_gui.cpp M gui/us_failed_gmp_run_gui.cpp M gui/us_investigator.cpp M gui/us_license.h M gui/us_load_auc.cpp M gui/us_loadable_noise.cpp M gui/us_minimize.cpp R gui/us_model_editor.cpp R gui/us_model_editor.h M gui/us_model_gui.cpp M gui/us_model_gui.h M gui/us_model_loader.cpp M gui/us_model_loader.h M gui/us_noise_loader.cpp M gui/us_noise_loader.h M gui/us_passwd.cpp M gui/us_passwd.h M gui/us_plot.cpp M gui/us_plot3d.cpp M gui/us_predict1.cpp M gui/us_project_gui.cpp M gui/us_properties.cpp M gui/us_report_gui.cpp M gui/us_resids_bitmap.cpp M gui/us_rotor_gui.cpp M gui/us_run_details2.cpp M gui/us_sassoc.cpp M gui/us_sassoc.h M gui/us_scan_excl_gui.cpp M gui/us_scan_excl_gui.h M gui/us_select_edits.cpp M gui/us_select_item.cpp M gui/us_select_runs.cpp M gui/us_sim_params_gui.cpp M gui/us_sim_params_gui.h M gui/us_solution_gui.cpp M gui/us_table.cpp M gui/us_table.h M gui/us_tmst_plot.cpp M gui/us_widgets.cpp M gui/us_widgets.h M gui/us_widgets_dialog.cpp M gui/us_widgets_dialog.h M gui/us_window_message.cpp A programs/CMakeLists.txt M programs/us/us.cpp M programs/us/us.h M programs/us/us_win_data.cpp M programs/us_2dsa/us_2dsa.cpp M programs/us_2dsa/us_2dsa_process.cpp M programs/us_2dsa/us_2dsa_process.h M programs/us_2dsa/us_adv_analysis_2d.cpp M programs/us_2dsa/us_analysis_control_2d.cpp M programs/us_2dsa/us_plot_control_2d.cpp M programs/us_2dsa/us_resplot_2d.cpp M programs/us_2dsa/us_show_norm.cpp M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_analysis_profile/us_analysis_profile.h M programs/us_analysis_profile/us_anapro_utils.cpp M programs/us_astfem_sim/us_astfem_sim.cpp M programs/us_astfem_sim/us_astfem_sim.h M programs/us_astfem_sim/us_clipdata.cpp M programs/us_astfem_sim/us_clipdata.h M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp A programs/us_autoflow_analysis/CMakeLists.txt M programs/us_autoflow_analysis/us_autoflow_analysis.cpp M programs/us_buoyancy/us_buoyancy.cpp M programs/us_colorgradient/us_colorgradient.cpp M programs/us_colorgradient/us_colorgradient.h A programs/us_com_project/CMakeLists.txt M programs/us_com_project/us_com_project_gui.cpp M programs/us_com_project/us_com_project_gui.h A programs/us_com_project_academic/CMakeLists.txt M programs/us_combine_models/us_combine_models.cpp M programs/us_config/us_admin.h M programs/us_config/us_advanced.h M programs/us_config/us_color.cpp M programs/us_config/us_color.h M programs/us_config/us_config.cpp M programs/us_config/us_config.h M programs/us_config/us_database.cpp M programs/us_config/us_font.h M programs/us_config/us_xpnhost.h M programs/us_config/us_xpnhost_db.cpp M programs/us_config/us_xpnhost_db.h M programs/us_convert/us_convert.cpp M programs/us_convert/us_convert_gui.cpp M programs/us_convert/us_experiment_gui.cpp M programs/us_convert/us_get_run.cpp M programs/us_convert/us_intensity.cpp M programs/us_convert/us_select_triples.cpp M programs/us_convert/us_select_triples.h M programs/us_dcdt/us_dcdt.cpp M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_ddist_combine/us_ddist_combine.h M programs/us_ddist_combine/us_select_rundd.cpp M programs/us_density_match/us_density_match.cpp M programs/us_density_match/us_model_params.cpp M programs/us_density_match/us_remove_models.cpp M programs/us_dmga_init/us_constraints_edit.cpp M programs/us_dmga_init/us_dmga_init.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h M programs/us_edit/us_edit_scan.cpp M programs/us_edit/us_exclude_profile.cpp M programs/us_edit/us_get_edit.cpp M programs/us_edit/us_ri_noise.cpp M programs/us_edit/us_select_lambdas.cpp M programs/us_equiltime/us_equiltime.cpp M programs/us_esigner_gmp/us_esigner_gmp.cpp A programs/us_experiment/CMakeLists.txt M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp M programs/us_export_legacy/us_export.cpp M programs/us_fds_filemanager/us_fds_filemanager.cpp A programs/us_fematch/CMakeLists.txt M 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utils/us_pcsa_modelrec.cpp M utils/us_project.cpp M utils/us_project.h M utils/us_report.cpp M utils/us_report.h M utils/us_rotor.cpp M utils/us_rotor.h M utils/us_run_protocol.cpp M utils/us_run_protocol.h M utils/us_simparms.cpp M utils/us_simparms.h M utils/us_solution.cpp M utils/us_solution.h M utils/us_solution_vals.cpp M utils/us_solution_vals.h M utils/us_solve_sim.cpp M utils/us_solve_sim.h M utils/us_tar.cpp M utils/us_time_state.cpp M utils/us_time_state.h M utils/us_timer.cpp M utils/us_timer.h M utils/us_xpn_data.cpp Log Message: ----------- Merge branch 'main' into utils_with_qt6 Commit: 13f6c5148d62ff0f6aa632c3de0bd533453f7365 https://github.com/ehb54/ultrascan3/commit/13f6c5148d62ff0f6aa632c3de0bd533453f7365 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-26 (Sun, 26 Oct 2025) Changed paths: M admin/cmake/FindQwt.cmake Log Message: ----------- Standardize Qwt environment variable checks and add `QWT_VERSION` and `QWT_QT_VERSION` definitions for improved CMake configuration clarity and maintainability. Commit: f6d6012fbc4fdbc543b30a6d3463bddc1673b616 https://github.com/ehb54/ultrascan3/commit/f6d6012fbc4fdbc543b30a6d3463bddc1673b616 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2025-10-26 (Sun, 26 Oct 2025) Changed paths: M .github/workflows/codeql-analysis.yml M .github/workflows/static-analysis.yml M .github/workflows/unit-tests.yml M CMakeLists.txt M README.md M admin/codeql/docker/local.pri.gui M admin/codeql/docker/local.pri.mpi M admin/codeql/docker/local.pri.somo M admin/release/buildpkg.pl M admin/release/centos7/Dockerfile M admin/release/redhat/Dockerfile M admin/release/ubuntu/Dockerfile M admin/release/ubuntu_qt6/Dockerfile M doc/manual/advanced_config.body M gui/us_combined_plots_parms_gui.cpp M gui/us_failed_gmp_run_gui.cpp M gui/us_plot.cpp M gui/us_report_gui.cpp M gui/us_widgets.cpp M gui/us_widgets.h M programs/us/us.cpp M programs/us/us.h M programs/us_2dsa/us_2dsa.cpp M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_astfem_sim/us_astfem_sim.cpp M programs/us_autoflow_analysis/us_autoflow_analysis.cpp M programs/us_com_project/us_com_project_gui.cpp M programs/us_convert/us_convert_gui.cpp M programs/us_dcdt/us_dcdt.cpp M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_fit_meniscus/us_fit_meniscus.cpp M programs/us_globalequil/us_long_messagebox.cpp M programs/us_mpi_analysis/us_mpi_analysis.cpp M programs/us_mpi_analysis/us_mpi_parse.cpp M programs/us_mwl_species_fit/us_mwl_species_fit.cpp M programs/us_pcsa/us_pcsa.cpp M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_second_moment/us_second_moment.cpp M qwtplot3d/qwtplot3d.pro M qwtplot3d/src/qwt3d_mousekeyboard.cpp M us_somo/develop/src/us_dirhist.cpp M utils/us_ana_profile.cpp M utils/us_link_ssl.cpp M utils/us_math2.cpp M utils/us_math2.h Log Message: ----------- Merge pull request #298 from ehb54/main update qt6-compile Commit: b50cca680591c9248bc21802a59b43b0b5b0687b https://github.com/ehb54/ultrascan3/commit/b50cca680591c9248bc21802a59b43b0b5b0687b Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2025-10-26 (Sun, 26 Oct 2025) Changed paths: M gui/us_analysis_base2.cpp M gui/us_extinctfitter_gui.cpp M gui/us_extinction_gui.cpp M gui/us_predict1.cpp M gui/us_run_details2.cpp M programs/us_2dsa/us_2dsa.cpp M programs/us_2dsa/us_show_norm.cpp M programs/us_buoyancy/us_buoyancy.cpp M programs/us_dcdt/us_dcdt.cpp M programs/us_density_match/us_density_match.cpp M programs/us_export_legacy/us_export.cpp M programs/us_fematch/us_fematch.cpp M programs/us_ga_init/us_ga_init.cpp M programs/us_globalequil/us_eqfit_control.cpp M programs/us_globalequil/us_eqhistogram.cpp M programs/us_globalequil/us_eqmath.cpp M programs/us_globalequil/us_eqmodel_control.cpp M programs/us_globalequil/us_eqreporter.cpp M programs/us_globalequil/us_fit_worker.cpp M programs/us_globalequil/us_globalequil.cpp M programs/us_integral/us_integral.cpp M programs/us_modelmetrics/us_modelmetrics.cpp M programs/us_pcsa/us_pcsa.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_vhw_enhanced/us_distrib_plot.cpp M programs/us_vhw_enhanced/us_vhw_enhanced.cpp M utils/libus_utils.pro M utils/us_ana_profile.cpp M utils/us_ana_profile.h M utils/us_analyte.h M utils/us_archive.cpp M utils/us_archive.h M utils/us_astfem_math.cpp M utils/us_astfem_math.h M utils/us_astfem_rsa.cpp M utils/us_astfem_rsa.h M utils/us_buffer.h M utils/us_cfa_data.cpp M utils/us_cfa_data.h M utils/us_constants.cpp M utils/us_constants.h M utils/us_crc.cpp M utils/us_crc.h M utils/us_crypto.cpp M utils/us_crypto.h M utils/us_csv_data.cpp M utils/us_csv_data.h M utils/us_dataIO.cpp M utils/us_dataIO.h M utils/us_datafiles.cpp M utils/us_datafiles.h M utils/us_db2.cpp M utils/us_db2.h M utils/us_dmga_constr.cpp M utils/us_eprofile.h M utils/us_extern.h M utils/us_geturl.cpp M utils/us_geturl.h M utils/us_global.cpp M utils/us_global.h M utils/us_gzip.cpp M utils/us_gzip.h M utils/us_hardware.h M utils/us_http_post.h M utils/us_hydrosim.cpp M utils/us_hydrosim.h M utils/us_lamm_astfvm.cpp M utils/us_lamm_astfvm.h M utils/us_license_t.cpp M utils/us_license_t.h M utils/us_link_ssl.cpp M utils/us_link_ssl.h M utils/us_lm.cpp M utils/us_local_server.cpp M utils/us_local_server.h M utils/us_math2.cpp M utils/us_math2.h M utils/us_matrix.cpp M utils/us_matrix.h M utils/us_memory.cpp M utils/us_memory.h M utils/us_model.cpp M utils/us_model.h M utils/us_noise.cpp M utils/us_noise.h M utils/us_pcsa_modelrec.cpp M utils/us_pcsa_modelrec.h M utils/us_project.cpp M utils/us_protocol_util.cpp M utils/us_protocol_util.h M utils/us_report.cpp M utils/us_report.h M utils/us_report_gmp.cpp M utils/us_rotor.cpp M utils/us_run_protocol.cpp M utils/us_run_protocol.h M utils/us_settings.cpp M utils/us_settings.h M utils/us_simparms.cpp M utils/us_simparms.h M utils/us_sleep.h M utils/us_solute.cpp M utils/us_solute.h M utils/us_solution.cpp M utils/us_solution_vals.h M utils/us_solve_sim.cpp M utils/us_stiffbase.cpp M utils/us_stiffbase.h M utils/us_tar.cpp M utils/us_tar.h M utils/us_time_state.h M utils/us_timer.cpp M utils/us_timer.h M utils/us_util.cpp M utils/us_util.h A utils/us_utils_qt.h M utils/us_vector.cpp M utils/us_vector.h M utils/us_xpn_data.cpp M utils/us_xpn_data.h M utils/us_zsolute.cpp M utils/us_zsolute.h Log Message: ----------- Merge pull request #299 from samo38/utils_with_qt6 Merge samo38/ultrascan3 at Utils with qt6 into lukas/qt6-compile Commit: be440f7beb44ba005109efbf314633c079010602 https://github.com/ehb54/ultrascan3/commit/be440f7beb44ba005109efbf314633c079010602 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-26 (Sun, 26 Oct 2025) Changed paths: M CMakeLists.txt M gui/CMakeLists.txt M qwtplot3d/CMakeLists.txt M test/utils/CMakeLists.txt M utils/CMakeLists.txt Log Message: ----------- Update CMake to support optional Qt6 usage and modernize Qt library linking Introduced a `USE_QT6` build option for switching between Qt5 and Qt6. Modernized Qt library linking by standardizing to `Qt::` aliases. Updated all related targets and dependencies for improved flexibility and maintainability. Commit: 4c7b899cc2a8e239f5e6e6e210f3f0b28c1d7165 https://github.com/ehb54/ultrascan3/commit/4c7b899cc2a8e239f5e6e6e210f3f0b28c1d7165 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-26 (Sun, 26 Oct 2025) Changed paths: M utils/us_crypto.cpp M utils/us_math2.cpp M utils/us_math2.h M utils/us_project.cpp M utils/us_report.cpp M utils/us_report.h M utils/us_rotor.cpp M utils/us_solution.cpp M utils/us_solution.h M utils/us_util.cpp M utils/us_util.h Log Message: ----------- Streamline random data initialization and UUID validation - Removed legacy random generator logic and unnecessary includes in `US_Math2`. - Unified UUID validation through the addition of `UUID_REGEX` in `US_Util`, eliminating redundant regex definitions. - Applied `const` correctness and range-based for loops for improved code clarity and maintainability. Commit: 401dd595a2ebd258a45c6b6de3a8670368fbff50 https://github.com/ehb54/ultrascan3/commit/401dd595a2ebd258a45c6b6de3a8670368fbff50 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-26 (Sun, 26 Oct 2025) Changed paths: M qwtplot3d/include/qwt3d_io_gl2ps.h M qwtplot3d/include/qwt3d_openglhelper.h M qwtplot3d/include/qwt3d_plot.h M qwtplot3d/include/qwt3d_surfaceplot.h M qwtplot3d/src/qwt3d_io.cpp M qwtplot3d/src/qwt3d_io_gl2ps.cpp M qwtplot3d/src/qwt3d_label.cpp M qwtplot3d/src/qwt3d_lighting.cpp M qwtplot3d/src/qwt3d_movements.cpp M qwtplot3d/src/qwt3d_plot.cpp M qwtplot3d/src/qwt3d_surfaceplot.cpp Log Message: ----------- Migrate `QGLWidget` to `QOpenGLWidget` for Qt5/Qt6 compatibility - Replaced `QGLWidget` instances with `QOpenGLWidget` across all affected files to modernize the codebase and ensure compatibility with Qt5 and Qt6. - Updated `renderPixmap` and `updateGL()` calls to use `grabFramebuffer()` and `update()` respectively for alignment with `QOpenGLWidget` API. - Adjusted include directives to utilize `QOpenGLFunctions` and `QOpenGLWidget` as needed. - Refactored constructors to remove deprecated `QGLWidget` parameters, enhancing clarity and maintainability. Commit: cdfc55c93b1bfcf85085c81b1008ec8cc5664db5 https://github.com/ehb54/ultrascan3/commit/cdfc55c93b1bfcf85085c81b1008ec8cc5664db5 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-26 (Sun, 26 Oct 2025) Changed paths: M programs/CMakeLists.txt Log Message: ----------- Modernize Qt library linking and add Qt6 OpenGLWidgets support - Updated `CMakeLists.txt` to replace `Qt5::` aliases with `Qt::` for library linking. - Added conditional linking for `Qt::OpenGLWidgets` when `USE_QT6` is enabled. - Simplified data visualization linking by standardizing to `Qt::DataVisualization`. Commit: b0294917db216081128ee6776aa0885343e57fa1 https://github.com/ehb54/ultrascan3/commit/b0294917db216081128ee6776aa0885343e57fa1 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-27 (Mon, 27 Oct 2025) Changed paths: M admin/cmake/FindQwt.cmake Log Message: ----------- Modernize `FindQwt.cmake` for dynamic Qt version detection and improved path handling - Replaced hardcoded Qt version checks with `QT_VERSION_MAJOR` for better flexibility. - Unified Qwt path suffix definitions to eliminate redundancy. - Updated Qwt include search logic to enhance maintainability and alignment with current Qt standards. Commit: ddfe73b1aa17df2f2421be4328756e27808905c5 https://github.com/ehb54/ultrascan3/commit/ddfe73b1aa17df2f2421be4328756e27808905c5 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-27 (Mon, 27 Oct 2025) Changed paths: M utils/us_util.h Log Message: ----------- Refactor `UUID_REGEX` declaration in `US_Util` - Moved `UUID_REGEX` from an inline static to a static member for consistency and improved maintainability. Commit: 9544a154835325e5c55cd9c951d90b3b563b4b68 https://github.com/ehb54/ultrascan3/commit/9544a154835325e5c55cd9c951d90b3b563b4b68 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-27 (Mon, 27 Oct 2025) Changed paths: M utils/us_util.cpp Log Message: ----------- Add `UUID_REGEX` as a static member in `US_Util` - Introduced `UUID_REGEX` as a static member for standardized UUID validation. - Ensures consistency and improves code clarity by centralizing the regular expression definition. Commit: be365b4a7833917e7995ff67c206636d31662824 https://github.com/ehb54/ultrascan3/commit/be365b4a7833917e7995ff67c206636d31662824 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-27 (Mon, 27 Oct 2025) Changed paths: M utils/us_db2.cpp Log Message: ----------- Add conditional handling for `LIBMARIADB` and `LIBMYSQL` SSL options in `US_DB2` - Introduced checks for `LIBMARIADB` and `LIBMYSQL` to appropriately configure SSL options. - Ensured `MYSQL_OPT_SSL_VERIFY_SERVER_CERT` is disabled for `LIBMARIADB` and `MYSQL_OPT_SSL_MODE` is set to `SSL_MODE_REQUIRED` for `LIBMYSQL`. - Improved compatibility and clarity by tailoring SSL behavior based on the library in use. Commit: fb1ac1a0cdb0632fb12ea84c6305fc25683502a1 https://github.com/ehb54/ultrascan3/commit/fb1ac1a0cdb0632fb12ea84c6305fc25683502a1 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-27 (Mon, 27 Oct 2025) Changed paths: M CMakeLists.txt Log Message: ----------- Add conditional Qt version handling and improve MySQL/MariaDB configuration in CMake - Introduced `USE_QT6` option to dynamically set `CMAKE_CXX_STANDARD` and related Qt configurations. - Added `QT_VERSION_MAJOR` and related variables for streamlined Qt version management. - Enhanced MySQL/MariaDB detection by setting version and module details for improved logging and clarity. - Updated `googletest` to version `v1.16.0`. Commit: f45449d5afe29c6ce2333a490f74d922ca77e56a https://github.com/ehb54/ultrascan3/commit/f45449d5afe29c6ce2333a490f74d922ca77e56a Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-27 (Mon, 27 Oct 2025) Changed paths: M gui/us_analysis_base2.cpp M gui/us_analyte_gui.cpp M gui/us_buffer_gui.cpp M gui/us_combined_plots_parms_gui.cpp M gui/us_csv_loader.cpp M gui/us_gui_util.cpp M gui/us_investigator.cpp M gui/us_license.cpp M gui/us_model_gui.cpp M gui/us_model_loader.cpp M gui/us_mwl_data.cpp M gui/us_plot.cpp M gui/us_plot.h M gui/us_plot3d.cpp M gui/us_plot3d.h M gui/us_predict1.cpp M gui/us_predict1.h M gui/us_report_general_gui.cpp M gui/us_report_gui.cpp M gui/us_sassoc.cpp M gui/us_sassoc.h M gui/us_scan_excl_gui.cpp M gui/us_solution_gui.cpp M gui/us_spectrodata.cpp M gui/us_spectrodata.h M gui/us_widgets.h Log Message: ----------- Migrate `QRegExp` to `QRegularExpression` and update deprecated Qt API usage - Replaced `QRegExp` with `QRegularExpression` across all relevant files for improved performance and modern API compatibility. - Updated deprecated methods like `setMargin` to `setContentsMargins` and `replace` overloads to use updated syntax. - Migrated `QGLWidget` to `QOpenGLWidget` for Qt5/Qt6 compatibility. - Adjusted signals, slots, and method parameters for use with modern Qt data types (`QPointF` replacing `QwtDoublePoint`). - Removed legacy/deprecated preprocessor macros and redundant Qt4-specific code paths. Commit: e0dac0f05cc15e30b37122b5d93220d8ddbd06d6 https://github.com/ehb54/ultrascan3/commit/e0dac0f05cc15e30b37122b5d93220d8ddbd06d6 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-27 (Mon, 27 Oct 2025) Changed paths: M programs/us/us.cpp Log Message: ----------- Replace `this` with `parent` in `QMessageBox::critical` calls and update argument handling for clarity and consistency. Commit: 229876ffd3dfa190e508942203f782c7ccd3a21c https://github.com/ehb54/ultrascan3/commit/229876ffd3dfa190e508942203f782c7ccd3a21c Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-27 (Mon, 27 Oct 2025) Changed paths: M programs/us_2dsa/us_show_norm.cpp Log Message: ----------- Replace `QwtDoubleRect` with `QRectF` in `us_show_norm.cpp` for consistency with modern Qt data types. Commit: 421adc1b835b9669f6f7be9ff74061f86da49cce https://github.com/ehb54/ultrascan3/commit/421adc1b835b9669f6f7be9ff74061f86da49cce Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-27 (Mon, 27 Oct 2025) Changed paths: M programs/us_abde/us_abde_main.cpp M programs/us_abde/us_norm_profile.cpp M programs/us_abde/us_norm_profile.h Log Message: ----------- Replace `setMargin` with `setContentsMargins` and `QwtDoublePoint` with `QPointF` for consistency and modernization of Qt API usage. Commit: 2e2a2088ff9f6aa86d3c71efffe1849208b69db0 https://github.com/ehb54/ultrascan3/commit/2e2a2088ff9f6aa86d3c71efffe1849208b69db0 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-27 (Mon, 27 Oct 2025) Changed paths: M programs/main1.inc Log Message: ----------- Replace `QRegExp` with `QRegularExpression` in `main1.inc` for modernization and improved Qt API compatibility. Commit: 157763286ccf749d9a866acd9608224ab5438fbf https://github.com/ehb54/ultrascan3/commit/157763286ccf749d9a866acd9608224ab5438fbf Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-27 (Mon, 27 Oct 2025) Changed paths: M programs/us_analysis_profile/us_analysis_profile.cpp Log Message: ----------- Migrate `QRegExp` to `QRegularExpression` in `us_analysis_profile.cpp` for modernization and updated Qt API compliance. Commit: 77d60151680de84d196e426431c20338d7037b75 https://github.com/ehb54/ultrascan3/commit/77d60151680de84d196e426431c20338d7037b75 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-27 (Mon, 27 Oct 2025) Changed paths: M programs/us_astfem_sim/us_astfem_sim.cpp Log Message: ----------- Replace `currentDateTime().toUTC()` with `currentDateTimeUtc()` for improved readability and adherence to modern Qt API usage. Commit: e7a18cbf2f5a891d11fb908cf513f60b42d55efd https://github.com/ehb54/ultrascan3/commit/e7a18cbf2f5a891d11fb908cf513f60b42d55efd Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M utils/us_util.cpp M utils/us_util.h Log Message: ----------- - Add `is_valid_uuid` method to validate UUID strings in `US_Util`. Commit: 486a15c6851e050314dbf9b610edf75bff9b3b33 https://github.com/ehb54/ultrascan3/commit/486a15c6851e050314dbf9b610edf75bff9b3b33 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M test/utils/test_us_ana_profile.cpp Log Message: ----------- - Add `scan_excl_nth` initialization in `test_us_ana_profile.cpp` for consistency with new profile attributes. Commit: 0cd14771ef3d6dd0f08ec30a9a89c7cf8c514488 https://github.com/ehb54/ultrascan3/commit/0cd14771ef3d6dd0f08ec30a9a89c7cf8c514488 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M gui/us_plot.cpp M gui/us_plot.h M gui/us_spectrodata.cpp M gui/us_spectrodata.h Log Message: ----------- - Replace `QwtDoubleInterval` with `QwtInterval` and `QwtDoubleRect` with `QRectF` for modernization and alignment with updated Qt data types. - Add `DbgLv` macro guard in `us_spectrodata.h` for improved debug handling. Commit: 50cb408dd7dc30ec665a6b9427e4130a84281578 https://github.com/ehb54/ultrascan3/commit/50cb408dd7dc30ec665a6b9427e4130a84281578 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_2dsa/us_show_norm.cpp Log Message: ----------- - Replace `QwtDoubleInterval` with `QwtInterval` in `us_show_norm.cpp` for modernization and alignment with updated Qt API conventions. Commit: 5b11838954d048df7196b7c8e5e0dfe12abc53fc https://github.com/ehb54/ultrascan3/commit/5b11838954d048df7196b7c8e5e0dfe12abc53fc Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_autoflow_analysis/CMakeLists.txt M programs/us_autoflow_analysis/us_autoflow_analysis.cpp Log Message: ----------- - Replace `Qt5::DataVisualization` with `Qt::DataVisualization` in `CMakeLists.txt` for compatibility with updated Qt modules. - Migrate `QRegExp` to `QRegularExpression` in `us_autoflow_analysis.cpp` for modernization and improved Qt API compliance. - Replace `setTimeSpec` with `setTimeZone` in `us_autoflow_analysis.cpp` to align with updated Qt date/time handling methods. Commit: e46a63dcfb8dd94ccad475aedbbc98ad278e9f72 https://github.com/ehb54/ultrascan3/commit/e46a63dcfb8dd94ccad475aedbbc98ad278e9f72 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_buoyancy/us_buoyancy.cpp M programs/us_buoyancy/us_buoyancy.h Log Message: ----------- - Replace `QwtDoublePoint` with `QPointF` in `us_buoyancy` for consistency with updated Qt API. Commit: 8ff50839c50fadd6050274e3c81b116114f8454c https://github.com/ehb54/ultrascan3/commit/8ff50839c50fadd6050274e3c81b116114f8454c Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_colorgradient/us_colorgradient.cpp Log Message: ----------- - Migrate `QRegExp` to `QRegularExpression` in `us_colorgradient.cpp` for modernization and Qt API compliance. - Add version-specific conditional handling for `pixmap()` method based on Qt 6.6.0+ changes. Commit: 938309c9aab5680d097687751e77ba15d86863e5 https://github.com/ehb54/ultrascan3/commit/938309c9aab5680d097687751e77ba15d86863e5 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_com_project/CMakeLists.txt M programs/us_com_project_academic/CMakeLists.txt Log Message: ----------- - Replace `Qt5::DataVisualization` with `Qt::DataVisualization` in `CMakeLists.txt` for compliance with updated Qt module naming conventions. Commit: 578c59683c712c74021c0fc5c8167fc210323b3b https://github.com/ehb54/ultrascan3/commit/578c59683c712c74021c0fc5c8167fc210323b3b Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_vhw_combine/us_vhw_combine.cpp M programs/us_vhw_combine/us_vhwc_pltctl.cpp M programs/us_vhw_combine/us_vhwc_pltctl.h M programs/us_vhw_enhanced/us_vhw_enhanced.cpp M programs/us_vhw_enhanced/us_vhw_enhanced.h Log Message: ----------- - Migrate `qApp->desktop()` to `QGuiApplication::primaryScreen()->availableSize()` for compatibility with updated Qt API. - Replace `QGLWidget` with `QOpenGLWidget` in `us_vhw_combine` for modern OpenGL rendering. - Replace `QwtDoublePoint` with `QPointF` in `us_vhw_enhanced` for consistency with updated Qt API. Commit: 9fe44e6404df5672fc990058b5e20b4fae28372c https://github.com/ehb54/ultrascan3/commit/9fe44e6404df5672fc990058b5e20b4fae28372c Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_combine_models/us_combine_models.cpp M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_dmga_init/us_dmga_init.cpp M programs/us_esigner_gmp/us_esigner_gmp.cpp M programs/us_export_legacy/us_export.cpp M programs/us_grid_editor/us_grid_editor.cpp M programs/us_legacy_converter/us_legacy_converter.cpp M programs/us_manage_data/us_data_model.cpp M programs/us_protocol_dev/CMakeLists.txt M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp Log Message: ----------- - Migrate `QRegExp` to `QRegularExpression` across multiple files for modernization and Qt API compliance. - Replace deprecated `setMargin` with `setContentsMargins` for layout updates. - Add version-specific handling for Qt 6.7.0+ signal connection changes in `us_grid_editor`. - Replace `QwtDoubleRect` and `QwtDoubleInterval` with `QRectF` and `QwtInterval` for alignment with updated Qt types. - Update `qApp->desktop()` to `QGuiApplication::primaryScreen()->availableSize()` for Qt API compatibility. - Standardize module linking by transitioning `Qt5::DataVisualization` to `Qt::DataVisualization` in `CMakeLists.txt`. - Improve QMessageBox handling to use modern button enums for consistency. Commit: 1ea7d5e3427a6983375833117520b28736d415cf https://github.com/ehb54/ultrascan3/commit/1ea7d5e3427a6983375833117520b28736d415cf Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_config/us_color.cpp M programs/us_config/us_newxpnhost_db.cpp M programs/us_config/us_xpnhost_db.cpp Log Message: ----------- - Migrate `QRegExp` to `QRegularExpression` across multiple files for Qt API modernization. - Replace integer-to-string conversions with `QString::number` for improved readability and consistency. - Refactor loop structures in `us_color.cpp` to use range-based syntax for clarity and maintainability. Commit: 2352815203d49a2c6e25b697186051bfd58c0202 https://github.com/ehb54/ultrascan3/commit/2352815203d49a2c6e25b697186051bfd58c0202 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_convert/us_convert.cpp M programs/us_convert/us_convert_gui.cpp M programs/us_convert/us_convert_gui.h M programs/us_convert/us_convertio.cpp M programs/us_convert/us_convertio.h M programs/us_convert/us_experiment.cpp M programs/us_convert/us_get_run.cpp Log Message: ----------- - Migrate `QRegExp` to `QRegularExpression` across multiple files for Qt API modernization and compliance. - Replace `QwtDoublePoint` with `QPointF` for consistency with updated Qt API. - Refactor QMessageBox usage to leverage modern button enums for improved readability and consistency. - Update loop constructs to range-based syntax for better maintainability. - Replace integer conversions with `QString::number` for enhanced clarity. - Use `setContentsMargins` instead of deprecated `setMargin` for layout updates. Commit: e20a5f10f65643667f1c479c0ffa16f705af3c81 https://github.com/ehb54/ultrascan3/commit/e20a5f10f65643667f1c479c0ffa16f705af3c81 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h M programs/us_edit/us_edit_scan.cpp M programs/us_edit/us_edit_scan.h Log Message: ----------- - Replace `QwtDoublePoint` with `QPointF` across `us_edit` and `us_edit_scan` for consistency with updated Qt API. - Migrate `QRegExp` to `QRegularExpression` for modernization and compliance with Qt's updated regex handling. - Refactor `QMessageBox` usage to use modern button enums for improved readability and maintainability. Commit: a9172152f71a9fc276c84b8bfc589d260bc54812 https://github.com/ehb54/ultrascan3/commit/a9172152f71a9fc276c84b8bfc589d260bc54812 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_proto_ranges.cpp Log Message: ----------- - Migrate `QRegExp` to `QRegularExpression` across `us_exp_utils.cpp`, `us_experiment_gui_optima.cpp`, and `us_proto_ranges.cpp` for Qt API modernization and compliance. - Replace `count()` with `length()` for improved string handling consistency. - Remove conditional macros for Qt versions under 5 in `us_proto_ranges.cpp`. Commit: 39de1a6bf7e20096e8453b36ae974f65e5099375 https://github.com/ehb54/ultrascan3/commit/39de1a6bf7e20096e8453b36ae974f65e5099375 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_fematch/CMakeLists.txt M programs/us_fematch/us_fematch.cpp M programs/us_fematch/us_plot_control_fem.cpp M programs/us_fematch/us_plot_control_fem.h Log Message: ----------- - Replace `QGLWidget` with `QOpenGLWidget` in `us_fematch` for modern OpenGL support. - Migrate `qApp->desktop()` to `QGuiApplication::primaryScreen()->availableSize()` for Qt API compliance. - Adjust `horizontalAdvance` calculation for proper width computation in `us_fematch.cpp`. - Update `CMakeLists.txt` to transition from `Qt5::DataVisualization` to `Qt::DataVisualization` for module naming consistency. Commit: a414b3d9e1c1a3ecf6e7faa40a690d6b5374ddc0 https://github.com/ehb54/ultrascan3/commit/a414b3d9e1c1a3ecf6e7faa40a690d6b5374ddc0 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_fit_meniscus/us_fit_meniscus.cpp M programs/us_fit_meniscus/us_fit_meniscus.h Log Message: ----------- - Replace `QwtDoublePoint` with `QPointF` in `us_fit_meniscus` for consistency with updated Qt API. - Migrate `QRegExp` to `QRegularExpression` in `us_fit_meniscus` for Qt API modernization. - Update `setTimeSpec` to `setTimeZone` for handling `QDateTime` in `us_fit_meniscus`. - Replace `QwtDoubleRect` with `QRectF` for alignment with updated Qt types. Commit: e696115e11b8585e8722c70ba49b540569cc45ef https://github.com/ehb54/ultrascan3/commit/e696115e11b8585e8722c70ba49b540569cc45ef Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_ga_init/us_ga_init.cpp M programs/us_ga_init/us_ga_init.h Log Message: ----------- Replace `QwtDoublePoint` and `QwtDoubleRect` with `QPointF` and `QRectF` in `us_ga_init` for compliance with updated Qt API. Commit: 467a3504c416ef04f3fe56a07b2f38c5a999893e https://github.com/ehb54/ultrascan3/commit/467a3504c416ef04f3fe56a07b2f38c5a999893e Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_globalequil/us_globalequil.cpp M programs/us_globalequil/us_globalequil.h Log Message: ----------- - Replace `QwtDoublePoint` with `QPointF` in `us_globalequil` for Qt API compliance - Refactor `QMessageBox` buttons to use modern enums for clarity and maintainability Commit: e9cdd9c03780d1d88ba0125f3ff8e2912d73ec2b https://github.com/ehb54/ultrascan3/commit/e9cdd9c03780d1d88ba0125f3ff8e2912d73ec2b Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_mwl_species_fit/CMakeLists.txt M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h M programs/us_mwl_species_fit/us_mwl_species_fit.cpp Log Message: ----------- - Migrate `QRegExp` to `QRegularExpression` across `us_mwl_species_fit.cpp` and `us_mwl_sf_plot3d.cpp` for Qt API modernization. - Replace deprecated `setMargin` with `setContentsMargins` in `us_mwl_sf_plot3d.cpp` for layout updates. - Standardize module linking in `CMakeLists.txt` by updating `Qt5::DataVisualization` to `Qt::DataVisualization`. - Add version-specific conditional handling for `QtDataVisualization` to support multiple Qt versions in `us_mwl_sf_plot3d.h`. Commit: 2b9bdd7fa0b19e1e8c7dfea72320583edb4e2695 https://github.com/ehb54/ultrascan3/commit/2b9bdd7fa0b19e1e8c7dfea72320583edb4e2695 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_mwl_spectra/us_mwl_spectra.cpp M programs/us_mwl_spectra/us_mwls_pltctl.cpp M programs/us_mwl_spectra/us_mwls_pltctl.h Log Message: ----------- - Replace `QGLWidget` with `QOpenGLWidget` in `us_mwl_spectra` for modern OpenGL support. - Migrate `QRegExp` to `QRegularExpression` for Qt API modernization. - Update `qApp->desktop()` to `QGuiApplication::primaryScreen()->availableSize()` for Qt API compliance. - Refactor `QMessageBox` button usage to modern enums for clarity and maintainability. Commit: 809561f9e4d2d107c406d1941d854e3185ca5b9d https://github.com/ehb54/ultrascan3/commit/809561f9e4d2d107c406d1941d854e3185ca5b9d Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_mwlr_viewer/us_mwl_pltctrl.cpp M programs/us_mwlr_viewer/us_mwl_pltctrl.h M programs/us_mwlr_viewer/us_mwlr_viewer.cpp Log Message: ----------- - Replace `QGLWidget` with `QOpenGLWidget` in `us_mwl_pltctrl` for modern OpenGL support. - Update `qApp->desktop()` to `QGuiApplication::primaryScreen()->availableSize()` for Qt API compliance. - Refactor `QMessageBox` buttons to use modern enums for clarity and maintainability. - Migrate `QRegExp` to `QRegularExpression` in `us_mwlr_viewer` for modernization and alignment with updated Qt API. Commit: 50a03c41966f5de28d8e55857c4d3fba43d0eede https://github.com/ehb54/ultrascan3/commit/50a03c41966f5de28d8e55857c4d3fba43d0eede Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_pcsa/us_mlplot.cpp M programs/us_pcsa/us_mrecs_loader.cpp M programs/us_pcsa/us_rpscan.cpp M programs/us_pcsa/us_rpscan.h Log Message: ----------- - Replace `QwtDoubleInterval` with `QwtInterval` for Qt API consistency in `us_mlplot` and `us_rpscan`. - Migrate `QRegExp` to `QRegularExpression` in `us_mrecs_loader` for API modernization. - Replace `QwtDoublePoint` with `QPointF` for compliance with updated Qt API in `us_rpscan`. Commit: a7974fd35b02afb8c43d4ca3e7fe4c1470a15825 https://github.com/ehb54/ultrascan3/commit/a7974fd35b02afb8c43d4ca3e7fe4c1470a15825 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_pseudo_absorbance/us_add_refScan.cpp M programs/us_pseudo_absorbance/us_convert_scan.cpp M programs/us_pseudo_absorbance/us_convert_scan.h M programs/us_pseudo_absorbance/us_pseudo_absorbance.cpp M programs/us_pseudo_absorbance/us_remove_ri.cpp M programs/us_pseudo_absorbance/us_remove_ri.h Log Message: ----------- - Replace `QRegExp` with `QRegularExpression` across multiple modules for Qt API modernization. - Replace `QwtDoublePoint` with `QPointF` for compliance with updated Qt API. - Replace deprecated `setMargin` with `setContentsMargins` for layout updates. - Add version-specific conditional handling for checkbox state changes to support multiple Qt versions in `us_convert_scan` and `us_add_refScan`. - Optimize pointer usage in value assignments with `auto` for cleaner code. Commit: 5652e0f953bea1e8842e501916ad4a957694aced https://github.com/ehb54/ultrascan3/commit/5652e0f953bea1e8842e501916ad4a957694aced Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_query_rmsd/CMakeLists.txt M programs/us_query_rmsd/us_query_rmsd.cpp Log Message: ----------- - Replace deprecated `setMargin` with `setContentsMargins` for layout updates in `us_query_rmsd`. - Update `CMakeLists.txt` to use `Qt::DataVisualization` for module naming consistency. Commit: ae2b63a2218bbfb633e19fbfe81e4beea25d0607 https://github.com/ehb54/ultrascan3/commit/ae2b63a2218bbfb633e19fbfe81e4beea25d0607 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_ramp/us_experiment_ra.cpp M programs/us_ramp/us_get_dbrun_ra.cpp M programs/us_ramp/us_mwlramp.cpp M programs/us_ramp/us_ramp.cpp M programs/us_ramp/us_ramp_gui.cpp M programs/us_ramp/us_ramp_gui.h Log Message: ----------- - Replace `QRegExp` with `QRegularExpression` across multiple files for API modernization. - Refactor `QMessageBox` button handling to use modern enums for improved clarity and maintainability. - Replace `QwtDoublePoint` with `QPointF` for compliance with updated Qt API. - Fix incorrect type conversion using `QString::number` for better error message formatting. Commit: 57da4043dd7ac8b393ff14dfdbe9aa3f2f54d222 https://github.com/ehb54/ultrascan3/commit/57da4043dd7ac8b393ff14dfdbe9aa3f2f54d222 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_reporter_gmp/CMakeLists.txt M programs/us_reporter_gmp/us_reporter_gmp.cpp Log Message: ----------- - Replace `QRegExp` with `QRegularExpression` for API modernization. - Update `QString` concatenation with `QString(".")` for consistency. - Replace `QGLWidget` with `QOpenGLWidget` for modern OpenGL support. - Update CMakeLists.txt to use `Qt::DataVisualization` for module name consistency. Commit: ba1ba9b93065e10cbb86caccc6381e1186e4554b https://github.com/ehb54/ultrascan3/commit/ba1ba9b93065e10cbb86caccc6381e1186e4554b Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_rotor_calibration/us_rotor_calibration.cpp M programs/us_rotor_calibration/us_rotor_calibration.h Log Message: ----------- Replace `QwtDoubleRect` with `QRectF` for compliance with updated Qt API in `us_rotor_calibration`. Commit: effe6ce3d4d0ef92adeb5f59be87f02d0faa2c14 https://github.com/ehb54/ultrascan3/commit/effe6ce3d4d0ef92adeb5f59be87f02d0faa2c14 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- - Replace `QwtDoublePoint` with `QPointF` in `us_spectrum` for Qt API compliance. - Refactor `QMessageBox` button handling to use modern enums for improved clarity. - Optimize `std::minmax_element` assignments using `auto` for cleaner code. - Use `qRound` for type consistency in wavelength bounds. - Replace `` with `` for modern header usage. Commit: 64d8413714c3108f937e8b76b1a8ba3f16c38a4d https://github.com/ehb54/ultrascan3/commit/64d8413714c3108f937e8b76b1a8ba3f16c38a4d Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-10-31 (Fri, 31 Oct 2025) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- - Fix incorrect `QMessageBox` button status logic in `us_edit`. Commit: deb377ae673f2e29f7a776716672ba7550739a87 https://github.com/ehb54/ultrascan3/commit/deb377ae673f2e29f7a776716672ba7550739a87 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-11-02 (Sun, 02 Nov 2025) Changed paths: M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp Log Message: ----------- - Add version-specific conditional handling for `setPenWidth` to support multiple Qt versions in `us_xpn_viewer`. Commit: fe96d5575a8f88b29c935c3e8c6c33468859f2cf https://github.com/ehb54/ultrascan3/commit/fe96d5575a8f88b29c935c3e8c6c33468859f2cf Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2025-11-07 (Fri, 07 Nov 2025) Changed paths: M .gitignore A .gitmodules M CMakeLists.txt A CMakePresets.json A admin/cmake/GenerateVersion.cmake A admin/cmake/Us3QrcCheck.cmake A admin/cmake/Us3Resources.cmake A admin/cmake/UsDefinesParser.cmake A admin/cmake/platform-config.cmake A admin/cmake/triplets/x64-osx-dynamic.cmake R admin/cmake/us_version.h.in M admin/test/docker/Dockerfile M alpha/us.cpp A buildsys/vcpkg/overlay-ports/qwt/portfile.cmake A buildsys/vcpkg/overlay-ports/qwt/vcpkg.json A buildsys/vcpkg/overlay-ports/qwtplot3d/portfile.cmake A buildsys/vcpkg/overlay-ports/qwtplot3d/qwtplot3d-config.cmake.in A buildsys/vcpkg/overlay-ports/qwtplot3d/vcpkg.json A doc/manual/CMakeLists.txt M gui/CMakeLists.txt M gui/libus_gui.pro M gui/us_analysis_base2.cpp M gui/us_analyte_gui.cpp M gui/us_buffer_gui.cpp M gui/us_combined_plots_parms_gui.cpp M gui/us_edit_spectrum.cpp M gui/us_extinctfitter_gui.cpp M gui/us_extinction_gui.cpp M gui/us_gui_settings.cpp M gui/us_gui_settings.h M gui/us_gui_util.cpp R gui/us_mac_utils.c R gui/us_mac_utils.h M gui/us_new_spectrum.cpp M gui/us_plot.cpp M gui/us_plot.h M gui/us_plot3d.cpp M gui/us_report_general_gui.cpp M gui/us_report_gui.cpp M gui/us_run_details2.cpp M gui/us_sassoc.cpp M gui/us_scan_excl_gui.cpp M gui/us_sim_params_gui.cpp M gui/us_solution_gui.cpp M gui/us_spectrodata.cpp M gui/us_spectrodata.h M gui/us_tmst_plot.cpp M gui/us_widgets.cpp M gui/us_widgets_dialog.cpp R gui/us_win_utils.c R gui/us_win_utils.h R gui/us_window_message.cpp R gui/us_window_message.h R gui/us_x11_utils.c R gui/us_x11_utils.h M programs/CMakeLists.txt A programs/us/CMakeLists.txt M programs/us/revision.sh M programs/us/us.cpp M programs/us/us.pro M programs/us/us_win_data.cpp A programs/us/us_win_data.h A programs/us_2dplot/CMakeLists.txt M programs/us_2dplot/us_2dplot.cpp M programs/us_2dplot/us_2dplot.h A programs/us_2dsa/CMakeLists.txt M programs/us_2dsa/us_2dsa.cpp M programs/us_2dsa/us_analysis_control_2d.cpp M programs/us_2dsa/us_resplot_2d.cpp M programs/us_2dsa/us_show_norm.cpp A programs/us_abde/CMakeLists.txt M programs/us_abde/us_norm_profile.cpp A programs/us_analysis_profile/CMakeLists.txt M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_analysis_profile/us_anapro_utils.cpp A programs/us_analyte/CMakeLists.txt A programs/us_assign_reviewers_gmp/CMakeLists.txt A programs/us_astfem_sim/CMakeLists.txt M programs/us_astfem_sim/us_astfem_sim.cpp M programs/us_astfem_sim/us_clipdata.h A programs/us_audit_trail_gmp/CMakeLists.txt M programs/us_autoflow_analysis/CMakeLists.txt A programs/us_buffer/CMakeLists.txt A programs/us_buoyancy/CMakeLists.txt M programs/us_buoyancy/us_buoyancy.cpp A programs/us_colorgradient/CMakeLists.txt M programs/us_com_project/CMakeLists.txt M programs/us_com_project/us_com_project_gui.cpp M programs/us_com_project_academic/CMakeLists.txt A programs/us_combine_models/CMakeLists.txt A programs/us_config/CMakeLists.txt M programs/us_config/us_color.cpp A programs/us_convert/CMakeLists.txt M programs/us_convert/us_convert_gui.cpp M programs/us_convert/us_intensity.cpp A programs/us_dcdt/CMakeLists.txt M programs/us_dcdt/us_dcdt.cpp A programs/us_ddist_combine/CMakeLists.txt M programs/us_ddist_combine/us_ddist_combine.cpp A programs/us_density_match/CMakeLists.txt A programs/us_dmga_init/CMakeLists.txt A programs/us_edit/CMakeLists.txt M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit_scan.cpp M programs/us_edit/us_ri_noise.cpp A programs/us_equiltime/CMakeLists.txt M programs/us_equiltime/us_equiltime.cpp A programs/us_esigner_gmp/CMakeLists.txt M programs/us_experiment/CMakeLists.txt M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_proto_ranges.cpp A programs/us_export_legacy/CMakeLists.txt M programs/us_export_legacy/us_export.cpp A programs/us_extinction/CMakeLists.txt A programs/us_fds_filemanager/CMakeLists.txt M programs/us_fds_filemanager/us_fds_filemanager.cpp M programs/us_fematch/CMakeLists.txt M programs/us_fematch/us_adv_dmgamc.cpp M programs/us_fematch/us_fematch.cpp M programs/us_fematch/us_resplot_fem.cpp M programs/us_fit_meniscus/CMakeLists.txt M programs/us_fit_meniscus/us_fit_meniscus.cpp A programs/us_ga_init/CMakeLists.txt M programs/us_ga_init/us_ga_init.cpp A programs/us_globalequil/CMakeLists.txt M programs/us_globalequil/us_eqfit_control.cpp M programs/us_globalequil/us_eqhistogram.cpp M programs/us_globalequil/us_globalequil.cpp A programs/us_grid_editor/CMakeLists.txt A programs/us_helpdaemon/CMakeLists.txt A programs/us_integral/CMakeLists.txt A programs/us_investigator/CMakeLists.txt A programs/us_legacy_converter/CMakeLists.txt A programs/us_license/CMakeLists.txt A programs/us_manage_data/CMakeLists.txt A programs/us_model_gui/CMakeLists.txt A programs/us_modelmetrics/CMakeLists.txt M programs/us_modelmetrics/us_modelmetrics.cpp A programs/us_mpi_analysis/CMakeLists.txt M programs/us_mwl_species_fit/CMakeLists.txt M programs/us_mwl_species_fit/us_mwl_species_fit.cpp A programs/us_mwl_species_sim/CMakeLists.txt M programs/us_mwl_species_sim/us_mwl_species_sim.cpp A programs/us_mwl_spectra/CMakeLists.txt M programs/us_mwl_spectra/us_mwl_spectra.cpp A programs/us_mwlr_viewer/CMakeLists.txt M programs/us_mwlr_viewer/us_mwlr_viewer.cpp A programs/us_pcsa/CMakeLists.txt M programs/us_pcsa/us_mlplot.cpp M programs/us_pcsa/us_pcsa.cpp M programs/us_pcsa/us_resplot_pc.cpp M programs/us_pcsa/us_rpscan.cpp A programs/us_predict1/CMakeLists.txt A programs/us_predict2/CMakeLists.txt A programs/us_project/CMakeLists.txt M programs/us_protocol_dev/us_protocol_dev_gui.cpp A programs/us_pseudo3d_combine/CMakeLists.txt M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp A programs/us_pseudo_absorbance/CMakeLists.txt M programs/us_query_rmsd/CMakeLists.txt A programs/us_ramp/CMakeLists.txt M programs/us_ramp/us_intensity_ra.cpp M programs/us_ramp/us_ramp_gui.cpp R programs/us_rasmol_control/us_rasmol_control.cpp R programs/us_rasmol_control/us_rasmol_control.h R programs/us_rasmol_control/us_rasmol_control.pro A programs/us_reassign_reviewers_gmp/CMakeLists.txt A programs/us_reporter/CMakeLists.txt M programs/us_reporter_gmp/CMakeLists.txt M programs/us_reporter_gmp/us_reporter_gmp.cpp A programs/us_rotor/CMakeLists.txt A programs/us_rotor_calibration/CMakeLists.txt M programs/us_rotor_calibration/us_rotor_calibration.cpp A programs/us_sassoc/CMakeLists.txt A programs/us_second_moment/CMakeLists.txt M programs/us_second_moment/us_second_moment.cpp A programs/us_solution/CMakeLists.txt A programs/us_spectrum/CMakeLists.txt M programs/us_spectrum/us_spectrum.cpp A programs/us_tmst_viewer/CMakeLists.txt A programs/us_vhw_combine/CMakeLists.txt M programs/us_vhw_combine/us_vhw_combine.cpp A programs/us_vhw_enhanced/CMakeLists.txt M programs/us_vhw_enhanced/us_distrib_plot.cpp M programs/us_vhw_enhanced/us_vhw_enhanced.cpp A programs/us_xpn_viewer/CMakeLists.txt M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp M qwtplot3d/CMakeLists.txt M qwtplot3d/include/qwt3d_openglhelper.h A scripts/build.sh M test-docker.sh M test/CMakeLists.txt M test/utils/CMakeLists.txt M test/utils/test_us_ana_profile.cpp M utils/CMakeLists.txt M utils/us_defines.h A vcpkg A vcpkg-configuration.json A vcpkg.json Log Message: ----------- Merge branch 'main' into lukas/qt6-compile Commit: 4d8935a878d0e3a7a55933b8f1ac3b616f8daf6b https://github.com/ehb54/ultrascan3/commit/4d8935a878d0e3a7a55933b8f1ac3b616f8daf6b Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-11-07 (Fri, 07 Nov 2025) Changed paths: M programs/us_2dsa/us_show_norm.cpp Log Message: ----------- - Remove redundant `#endif` directive in `us_show_norm` for improved code cleanliness. Commit: 8d6d6c8b7f040da86cab0c2fde8c858b808a8005 https://github.com/ehb54/ultrascan3/commit/8d6d6c8b7f040da86cab0c2fde8c858b808a8005 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-11-07 (Fri, 07 Nov 2025) Changed paths: M CMakeLists.txt M utils/CMakeLists.txt Log Message: ----------- Update CMakeLists.txt to use `Qt` namespace for module consistency - Replace `Qt5::` with `Qt::` in `us3_resources` linking. - Modify `utils` linking to use `Qt::` for core modules (`Core`, `Xml`, `Network`, `Sql`). Commit: 21062f87c59071f5d7763db68f6ee141ccb2bf99 https://github.com/ehb54/ultrascan3/commit/21062f87c59071f5d7763db68f6ee141ccb2bf99 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-11-07 (Fri, 07 Nov 2025) Changed paths: M gui/us_plot.cpp Log Message: ----------- Replace `QRegularExpression` with `QStringLiteral` for improved string handling in `us_plot`. Commit: c92f56e6242bb4cf31fca9bcaf196c7edfb01846 https://github.com/ehb54/ultrascan3/commit/c92f56e6242bb4cf31fca9bcaf196c7edfb01846 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-11-07 (Fri, 07 Nov 2025) Changed paths: M gui/us_analyte_gui.cpp Log Message: ----------- Refactor `us_analyte_gui` conditional checks for `isEmpty()` usage - Replace `size() != 0` with `!isEmpty()` for `seqsmry`. - Replace `size() == 0` with `isEmpty()` for `descriptions`. Commit: 8d796a2e98334176781d581da498b11e1b5f91a4 https://github.com/ehb54/ultrascan3/commit/8d796a2e98334176781d581da498b11e1b5f91a4 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-11-07 (Fri, 07 Nov 2025) Changed paths: M gui/us_model_loader.cpp Log Message: ----------- Properly convert unix wildcard to regex. Commit: 4a82e64bee4952023e898053ce4ad6b68b565b8b https://github.com/ehb54/ultrascan3/commit/4a82e64bee4952023e898053ce4ad6b68b565b8b Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-11-07 (Fri, 07 Nov 2025) Changed paths: M gui/us_spectrodata.cpp Log Message: ----------- Remove unused `setInterval` calls from `us_spectrodata` for code cleanup. Commit: d4094016318557f26afe81290047fe20bdc9a07a https://github.com/ehb54/ultrascan3/commit/d4094016318557f26afe81290047fe20bdc9a07a Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-11-07 (Fri, 07 Nov 2025) Changed paths: M programs/us_autoflow_analysis/us_autoflow_analysis.cpp Log Message: ----------- Update `QRegularExpression` pattern in `us_autoflow_analysis` - Replace wildcard-to-regex conversion with explicit regex for model descriptions. Commit: e1c24e44caea4e7c5e14a3e0a3dffbb464c89871 https://github.com/ehb54/ultrascan3/commit/e1c24e44caea4e7c5e14a3e0a3dffbb464c89871 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-11-07 (Fri, 07 Nov 2025) Changed paths: M CMakeLists.txt Log Message: ----------- Enable static libs preference and testing in CMake - Set `US3_PREFER_STATIC` default to ON. - Introduce `BUILD_TESTING` option, defaulted to ON. - Replace `US3_BUILD_TESTS` with `BUILD_TESTING` for consistency in testing configurations. Commit: 1582fd4d72e144c840fd83c29710ddcca650cfea https://github.com/ehb54/ultrascan3/commit/1582fd4d72e144c840fd83c29710ddcca650cfea Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-11-07 (Fri, 07 Nov 2025) Changed paths: M CMakeLists.txt Log Message: ----------- Disable `BUILD_TESTING` by default in CMake configuration Commit: d97b94cfc728b74cdc4d22f4294fba7444bd03fd https://github.com/ehb54/ultrascan3/commit/d97b94cfc728b74cdc4d22f4294fba7444bd03fd Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-11-07 (Fri, 07 Nov 2025) Changed paths: M programs/us_autoflow_analysis/us_autoflow_analysis.cpp M programs/us_convert/us_convert_gui.cpp M programs/us_convert/us_experiment.cpp M programs/us_fit_meniscus/us_fit_meniscus.cpp M programs/us_mwl_species_fit/us_mwl_species_fit.cpp M programs/us_pcsa/us_mrecs_loader.cpp M programs/us_rotor_calibration/us_rotor_calibration.h M programs/us_vhw_enhanced/us_vhw_enhanced.h M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp M utils/us_datafiles.cpp M utils/us_report.h Log Message: ----------- Refactor and optimize code for improved readability and functionality - Simplify `QFileInfo` instantiation in `us_mwl_species_fit`. - Optimize `QString::number` usage with `rightJustified` in `us_datafiles`. - Update regex patterns in `us_fit_meniscus` and `us_autoflow_analysis` to improve readability and functionality. - Use `QTimeZone::utc()` instead of string-based UTC for consistency in multiple files. - Mark `QRegularExpression` instances as `static` for efficiency in `us_xpn_viewer`. - Refactor `QRegularExpression` matching logic to use `QString::indexOf` for improved clarity and performance. - Adjust spacing and alignment in headers for consistent formatting. Commit: 25c3b692febb46e387afcec3bd534dcbebe88222 https://github.com/ehb54/ultrascan3/commit/25c3b692febb46e387afcec3bd534dcbebe88222 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-11-09 (Sun, 09 Nov 2025) Changed paths: M gui.pri M gui/libus_gui.pro M qwtplot3d/qwtplot3d.pro Log Message: ----------- Add `openglwidgets` to project dependencies - Include `openglwidgets` in `qwtplot3d.pro` to enhance OpenGL functionality. - Add `openglwidgets` to `gui.pri` for GUI consistency. - Update `libus_gui.pro` with `openglwidgets` for improved feature support. Commit: fbd81603bae2e97d470b843b3572f7146ca3f896 https://github.com/ehb54/ultrascan3/commit/fbd81603bae2e97d470b843b3572f7146ca3f896 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-11-09 (Sun, 09 Nov 2025) Changed paths: M programs/us_convert/us_convert_gui.cpp Log Message: ----------- Fix logic error in `us_convert_gui` runID validation - Correct `QRegularExpression` match condition by adding negation to properly validate `runID`. Commit: 429e64f9ebb3a40388adb92d281281e9cf91c572 https://github.com/ehb54/ultrascan3/commit/429e64f9ebb3a40388adb92d281281e9cf91c572 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-11-09 (Sun, 09 Nov 2025) Changed paths: M qwtplot3d/src/qwt3d_label.cpp Log Message: ----------- Update QT version check in `qwt3d_label.cpp` - Modify QT version comparison logic to use `QT_VERSION_CHECK` for improved readability and maintainability. Commit: 5357385a614755a654c3bd5aaf8e001b508a7849 https://github.com/ehb54/ultrascan3/commit/5357385a614755a654c3bd5aaf8e001b508a7849 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-11-09 (Sun, 09 Nov 2025) Changed paths: M gui.pri M gui/libus_gui.pro M qwtplot3d/qwtplot3d.pro Log Message: ----------- Add conditional `openglwidgets` inclusion based on Qt version - Update `qwtplot3d.pro` to include `openglwidgets` only for Qt versions greater than 5.99. - Adjust `gui.pri` to conditionally add `openglwidgets` for improved flexibility with Qt versions. - Modify `libus_gui.pro` to include `openglwidgets` dependency based on the Qt version. Commit: c96c66f46ba9f308354280592e406997830bdcd3 https://github.com/ehb54/ultrascan3/commit/c96c66f46ba9f308354280592e406997830bdcd3 Author: ehb54 Date: 2025-11-10 (Mon, 10 Nov 2025) Changed paths: M makeall.sh Log Message: ----------- Update version check for qmake in makeall.sh Commit: 61217222a10d435ddf1cd4ad032ba4e6bd865c52 https://github.com/ehb54/ultrascan3/commit/61217222a10d435ddf1cd4ad032ba4e6bd865c52 Author: ehb54 Date: 2025-11-10 (Mon, 10 Nov 2025) Changed paths: M makeall.sh Log Message: ----------- Merge pull request #307 from ehb54/ehb54-patch-4 Update version check for qmake in makeall.sh Commit: 910f23c2f12c7bfa2cff364725d6e6b07dc3735f https://github.com/ehb54/ultrascan3/commit/910f23c2f12c7bfa2cff364725d6e6b07dc3735f Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2025-11-12 (Wed, 12 Nov 2025) Changed paths: M utils/us_db2.cpp Log Message: ----------- Fix size of returned QByteArray for US_DB2::mysqlEscapeString Refactor mysqlEscapeString to use constData for input and adjust resizing logic. Commit: 0587da27d11a47a031a2345ea944e5b52923bd00 https://github.com/ehb54/ultrascan3/commit/0587da27d11a47a031a2345ea944e5b52923bd00 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-11-13 (Thu, 13 Nov 2025) Changed paths: M gui/us_gui_util.cpp M gui/us_spectrodata.cpp M gui/us_spectrodata.h Log Message: ----------- Refactor `US_SpectrogramData` and update raster handling - Rename `initRaster` to `getRaster` and update method signature to be `const`. This helps to avoid confusion with the QwtRasterData::initRaster, which has different functionality. - Add conditional `setInterval` calls for compatibility with older `Qwt` versions. - Adjust `value` method to use `const` arguments and override specifier. - Refactor `boundingRect` to remove unnecessary `#if` conditions. - Update references to renamed `getRaster` method in related files. Commit: 49e82b3ef6a8a4567a4da2dd86bd2ea24263c28d https://github.com/ehb54/ultrascan3/commit/49e82b3ef6a8a4567a4da2dd86bd2ea24263c28d Author: alexsav815 Date: 2025-11-13 (Thu, 13 Nov 2025) Changed paths: M programs/us_autoflow_analysis/us_autoflow_analysis.cpp M programs/us_autoflow_analysis/us_autoflow_analysis.h Log Message: ----------- [Qt5/Qt6]GMP : 5. ANALYSIS -- fix 'Show oerlay' & 'Delete' buttons behavior in Qt6 builds... Commit: 39a4c51ee0332b7bc85d5ad3215f311df748b287 https://github.com/ehb54/ultrascan3/commit/39a4c51ee0332b7bc85d5ad3215f311df748b287 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-11-14 (Fri, 14 Nov 2025) Changed paths: M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_analysis_profile/us_analysis_profile.h M programs/us_autoflow_analysis/us_autoflow_analysis.cpp M programs/us_autoflow_analysis/us_autoflow_analysis.h Log Message: ----------- Refactor signal mapping logic in `us_autoflow_analysis` and `us_analysis_profile` - Replace `QSignalMapper` usage with lambda-based connections for better readability and modern Qt practices. - Remove obsolete `QSignalMapper` declarations and related code in headers for cleanup. Commit: 57bf3bd1f029bc588861ddbc4b027a9227ba29ef https://github.com/ehb54/ultrascan3/commit/57bf3bd1f029bc588861ddbc4b027a9227ba29ef Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2025-11-15 (Sat, 15 Nov 2025) Changed paths: M gui/us_plot.cpp M gui/us_plot.h Log Message: ----------- Merge branch 'main' into lukas/qt6-compile Commit: 9717b5a3c53ea980931ab8abd9723d89c4678375 https://github.com/ehb54/ultrascan3/commit/9717b5a3c53ea980931ab8abd9723d89c4678375 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2025-11-16 (Sun, 16 Nov 2025) Changed paths: M gui/us_plot.cpp Log Message: ----------- Replace leftRef with left Commit: 7ac7f3643ac686e016a4c0bda79f188aefc06933 https://github.com/ehb54/ultrascan3/commit/7ac7f3643ac686e016a4c0bda79f188aefc06933 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-11-16 (Sun, 16 Nov 2025) Changed paths: M utils/us_db2.cpp M utils/us_db2.h Log Message: ----------- Update `value` method to return default `QVariant` - Replace `QVariant::Invalid` with default `QVariant()` in `US_DB2::value` method to align with modern QVariant usage. - Update method documentation in `us_db2.h` to reflect the change. Commit: 6334d8a547ec98d53ccca0926c511a7554263428 https://github.com/ehb54/ultrascan3/commit/6334d8a547ec98d53ccca0926c511a7554263428 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-11-17 (Mon, 17 Nov 2025) Changed paths: M utils/us_xpn_data.cpp Log Message: ----------- Uncomment `column_indexes` calls in `us_xpn_data.cpp` to enable proper column index retrieval logic. Commit: 72306fcec7a1e4c91c96c06a871d7f0478ac8964 https://github.com/ehb54/ultrascan3/commit/72306fcec7a1e4c91c96c06a871d7f0478ac8964 Author: alexsav815 Date: 2025-11-17 (Mon, 17 Nov 2025) Changed paths: M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp M programs/us_xpn_viewer/us_xpn_viewer_gui.h Log Message: ----------- GMP : 2.LIVE_UPDATE -- check for positiveness of the vacuum value before updatign GUI... Commit: 9d2cd0b12aa0e908db8596ec4688818c8a8b669e https://github.com/ehb54/ultrascan3/commit/9d2cd0b12aa0e908db8596ec4688818c8a8b669e Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2025-11-19 (Wed, 19 Nov 2025) Changed paths: A .github/workflows/.yamllint.yml M .github/workflows/codeql-analysis.yml A .github/workflows/doc-build.yml M admin/codeql/docker/local.pri.gui M admin/codeql/docker/local.pri.mpi M admin/codeql/docker/local.pri.somo M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h M utils/us_run_protocol.h Log Message: ----------- Merge pull request #318 from ehb54/main Update lukas/qt6-compile with main Commit: 1687a57993f87b8937fdcf06045e10225b504ca6 https://github.com/ehb54/ultrascan3/commit/1687a57993f87b8937fdcf06045e10225b504ca6 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2025-11-19 (Wed, 19 Nov 2025) Changed paths: M .github/workflows/codeql-analysis.yml Log Message: ----------- CodeQl action: Add qt6 containers for gui and mpi Updated branches for pull requests and enabled additional Qt6 containers. Commit: 06815f05ab2f337ae26ce8382ddaf80069e0e931 https://github.com/ehb54/ultrascan3/commit/06815f05ab2f337ae26ce8382ddaf80069e0e931 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-11-25 (Tue, 25 Nov 2025) Changed paths: R .github/workflows/.yamllint.yml M .github/workflows/codeql-analysis.yml M .github/workflows/doc-build.yml M .github/workflows/static-analysis.yml A .github/workflows/unit-tests-v2.yml M .github/workflows/unit-tests.yml M CMakeLists.txt A admin/linting/cmake/.cmake-format.yaml A admin/linting/cmake/README.md A admin/linting/yaml/.yamllint.yml M gui/libus_gui.pro M gui/us_combined_plots_parms_gui.cpp A gui/us_convert_gui.cpp A gui/us_convert_gui.h A gui/us_experiment_gui.cpp A gui/us_experiment_gui.h A gui/us_get_run.cpp A gui/us_get_run.h A gui/us_intensity.cpp A gui/us_intensity.h A gui/us_select_triples.cpp A gui/us_select_triples.h A gui/us_selectbox.cpp A gui/us_selectbox.h M programs/us_autoflow_analysis/CMakeLists.txt M programs/us_autoflow_analysis/us_autoflow_analysis.cpp M programs/us_autoflow_analysis/us_autoflow_analysis.h M programs/us_autoflow_analysis/us_autoflow_analysis.pro M programs/us_com_project/CMakeLists.txt M programs/us_com_project/us_com_project.pro M programs/us_com_project/us_com_project_gui.h M programs/us_com_project_academic/CMakeLists.txt M programs/us_com_project_academic/us_com_project_academic.pro M programs/us_convert/CMakeLists.txt R programs/us_convert/us_convert.cpp R programs/us_convert/us_convert.h M programs/us_convert/us_convert.pro R programs/us_convert/us_convert_gui.cpp R programs/us_convert/us_convert_gui.h R programs/us_convert/us_convertio.cpp R programs/us_convert/us_convertio.h R programs/us_convert/us_experiment.cpp R programs/us_convert/us_experiment.h R programs/us_convert/us_experiment_gui.cpp R programs/us_convert/us_experiment_gui.h R programs/us_convert/us_get_run.cpp R programs/us_convert/us_get_run.h R programs/us_convert/us_intensity.cpp R programs/us_convert/us_intensity.h R programs/us_convert/us_select_triples.cpp R programs/us_convert/us_select_triples.h R programs/us_convert/us_selectbox.cpp R programs/us_convert/us_selectbox.h M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_ddist_combine/us_ddist_combine.h M programs/us_edit/us_edit.cpp M programs/us_experiment/CMakeLists.txt M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment.pro M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_fematch/CMakeLists.txt M programs/us_fematch/us_fematch.pro M programs/us_fit_meniscus/CMakeLists.txt M programs/us_legacy_converter/CMakeLists.txt M programs/us_legacy_converter/us_legacy_converter.cpp M programs/us_legacy_converter/us_legacy_converter.h M programs/us_legacy_converter/us_legacy_converter.pro M programs/us_protocol_dev/CMakeLists.txt M programs/us_protocol_dev/us_protocol_dev.pro M programs/us_protocol_dev/us_protocol_dev_gui.cpp M programs/us_protocol_dev/us_protocol_dev_gui.h M programs/us_query_rmsd/CMakeLists.txt M programs/us_query_rmsd/us_query_rmsd.pro M programs/us_reporter_gmp/CMakeLists.txt M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_reporter_gmp/us_reporter_gmp.pro M programs/us_xpn_viewer/us_xpn_viewer.pro M test-docker.sh M utils/CMakeLists.txt M utils/libus_utils.pro A utils/us_convert.cpp A utils/us_convert.h A utils/us_convertio.cpp A utils/us_convertio.h A utils/us_experiment.cpp A utils/us_experiment.h Log Message: ----------- Merge branch 'main' into lukas/qt6-compile Commit: c7cd4ad5a59edf9e177e82908100cf3fe0247d5c https://github.com/ehb54/ultrascan3/commit/c7cd4ad5a59edf9e177e82908100cf3fe0247d5c Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2025-12-03 (Wed, 03 Dec 2025) Changed paths: M programs/us_protocol_dev/us_protocol_dev_gui.cpp M utils/us_experiment.cpp Log Message: ----------- Merge branch 'main' into lukas/qt6-compile Commit: 3e70e06b8a38cdc3ce1ed864e58449d0b843b23e https://github.com/ehb54/ultrascan3/commit/3e70e06b8a38cdc3ce1ed864e58449d0b843b23e Author: ehb54 Date: 2025-12-04 (Thu, 04 Dec 2025) Changed paths: M gui/us_convert_gui.cpp M programs/us_protocol_dev/us_protocol_dev_gui.cpp M utils/us_convertio.cpp M utils/us_convertio.h M utils/us_experiment.cpp M utils/us_experiment.h Log Message: ----------- Merge branch 'main' into lukas/qt6-compile Commit: eacada70d7c465b727dd7db3997339c6bd9bf1f5 https://github.com/ehb54/ultrascan3/commit/eacada70d7c465b727dd7db3997339c6bd9bf1f5 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2025-12-09 (Tue, 09 Dec 2025) Changed paths: M programs/us_ga_init/us_solutedata.cpp Log Message: ----------- Merge branch 'main' into lukas/qt6-compile Commit: c90cc6690c06b1be85cf82126319a190c30d6505 https://github.com/ehb54/ultrascan3/commit/c90cc6690c06b1be85cf82126319a190c30d6505 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2025-12-10 (Wed, 10 Dec 2025) Changed paths: M CMakeLists.txt M CMakePresets.json A buildsys/vcpkg/overlay-ports/qwt-6-1-6/portfile.cmake A buildsys/vcpkg/overlay-ports/qwt-6-1-6/vcpkg.json R buildsys/vcpkg/overlay-ports/qwt/portfile.cmake R buildsys/vcpkg/overlay-ports/qwt/vcpkg.json M vcpkg.json Log Message: ----------- Enhance CMake configuration for Qt5 and Qt6 support, update vcpkg dependencies, and remove obsolete Qwt port files Commit: 560d7338f7f1ce606716df47c6d22e66427dc74b https://github.com/ehb54/ultrascan3/commit/560d7338f7f1ce606716df47c6d22e66427dc74b Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-12 (Fri, 12 Dec 2025) Changed paths: A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-1-6-qt5/portfile.cmake A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-1-6-qt5/qwtplot3d-config.cmake.in A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-1-6-qt5/vcpkg.json A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt5/portfile.cmake A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt5/qwtplot3d-config.cmake.in A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt5/vcpkg.json A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt6/portfile.cmake A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt6/qwtplot3d-config.cmake.in A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt6/vcpkg.json R buildsys/vcpkg/overlay-ports/qwtplot3d/portfile.cmake R buildsys/vcpkg/overlay-ports/qwtplot3d/qwtplot3d-config.cmake.in R buildsys/vcpkg/overlay-ports/qwtplot3d/vcpkg.json Log Message: ----------- Add overlay ports for `qwtplot3d` with support for `qwt-6-3-0-qt5` and `qwt-6-3-0-qt6` dependencies Commit: e4b7267d108684864f940f5d9f7c82d6ce506dcf https://github.com/ehb54/ultrascan3/commit/e4b7267d108684864f940f5d9f7c82d6ce506dcf Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-12 (Fri, 12 Dec 2025) Changed paths: A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/config.patch A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/fix_dll_install.patch A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/portfile.cmake A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/unofficial-qwt-config.cmake A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/vcpkg.json Log Message: ----------- Add overlay port for `qwt-6-3-0-qt5` with vcpkg configuration and patches Commit: fc1bfc04d0d7d5c090981678b554ca62175aa77b https://github.com/ehb54/ultrascan3/commit/fc1bfc04d0d7d5c090981678b554ca62175aa77b Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-12 (Fri, 12 Dec 2025) Changed paths: A buildsys/vcpkg/overlay-ports/qt5-multimedia/drop-wmf-plugin.patch A buildsys/vcpkg/overlay-ports/qt5-multimedia/portfile.cmake A buildsys/vcpkg/overlay-ports/qt5-multimedia/vcpkg.json Log Message: ----------- Add overlay port for `qt5-multimedia` with vcpkg configuration and patches Commit: b83a3e819e759f5ad754a562142575e7105c00ed https://github.com/ehb54/ultrascan3/commit/b83a3e819e759f5ad754a562142575e7105c00ed Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-12 (Fri, 12 Dec 2025) Changed paths: M programs/us_com_project/CMakeLists.txt M programs/us_com_project_academic/CMakeLists.txt M programs/us_mwl_species_fit/CMakeLists.txt M programs/us_protocol_dev/CMakeLists.txt M programs/us_query_rmsd/CMakeLists.txt M programs/us_reporter_gmp/CMakeLists.txt Log Message: ----------- Remove redundant `find_package(Qt5)` calls in `CMakeLists.txt` across multiple programs. Commit: 84cbc6c9c0d0d6d9564567e1fce4b84ae3e4cdd1 https://github.com/ehb54/ultrascan3/commit/84cbc6c9c0d0d6d9564567e1fce4b84ae3e4cdd1 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-12 (Fri, 12 Dec 2025) Changed paths: M CMakeLists.txt Log Message: ----------- Add conditional check for `Qt::Test` target alias creation in `CMakeLists.txt` Commit: 7485285209c8c4fbb5e9311a6765cf10f58d76c0 https://github.com/ehb54/ultrascan3/commit/7485285209c8c4fbb5e9311a6765cf10f58d76c0 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-12 (Fri, 12 Dec 2025) Changed paths: M CMakePresets.json M vcpkg.json Log Message: ----------- Add support for Qwt 6.1.6 and 6.3.0 configurations with updated vcpkg features and CMake presets - Enhance `vcpkg.json` with new features for Qwt 6.1.6 and 6.3.0. - Update `CMakePresets.json` to include custom presets for different Qwt versions across platforms. - Refactor preset definitions for improved clarity and platform specificity. Commit: 05fcfe57f6acbc11cc86599a4c6cd79df932904e https://github.com/ehb54/ultrascan3/commit/05fcfe57f6acbc11cc86599a4c6cd79df932904e Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-12 (Fri, 12 Dec 2025) Changed paths: M CMakePresets.json Log Message: ----------- Add new `base-qt5-qwt616` preset and refactor Qt5 Qwt6.1.6 platform-specific presets to inherit from it Commit: b6d77d788c73d678ed8809aef7927dde929b92a3 https://github.com/ehb54/ultrascan3/commit/b6d77d788c73d678ed8809aef7927dde929b92a3 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-12 (Fri, 12 Dec 2025) Changed paths: M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/vcpkg.json Log Message: ----------- Simplify `vcpkg.json` dependencies for `qwt-6-3-0-qt5` by consolidating `qt5-base` features Commit: 279b0ac8ed33b11b36efd374afe030708a44c890 https://github.com/ehb54/ultrascan3/commit/279b0ac8ed33b11b36efd374afe030708a44c890 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-12 (Fri, 12 Dec 2025) Changed paths: M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/portfile.cmake M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/unofficial-qwt-config.cmake Log Message: ----------- Update `qwt-6-3-0-qt5` overlay port: add Qt5 configuration handling and Qwt version file generation. Commit: e7f44af75262b12412c8808ae922b043a0e320a7 https://github.com/ehb54/ultrascan3/commit/e7f44af75262b12412c8808ae922b043a0e320a7 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-12 (Fri, 12 Dec 2025) Changed paths: M buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt6/portfile.cmake M buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt6/qwtplot3d-config.cmake.in M buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt6/vcpkg.json Log Message: ----------- Update `qwtplot3d-qwt-6-3-0-qt6` overlay port: migrate from Qt5 to Qt6 dependencies and configuration Commit: 52fd18139fe6586687ec67848b932163ac7cd15c https://github.com/ehb54/ultrascan3/commit/52fd18139fe6586687ec67848b932163ac7cd15c Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-12 (Fri, 12 Dec 2025) Changed paths: A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/config.patch A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/fix_dll_install.patch A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/unofficial-qwt-config.cmake A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/vcpkg.json Log Message: ----------- Add new `qwt-6-3-0-qt6` overlay port with Qt6 dependencies, patches, and vcpkg configuration files. Commit: ef4652ce8e31076480754ee2ff0a89ff6c6b53c9 https://github.com/ehb54/ultrascan3/commit/ef4652ce8e31076480754ee2ff0a89ff6c6b53c9 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-12 (Fri, 12 Dec 2025) Changed paths: M CMakePresets.json M vcpkg.json Log Message: ----------- Update `vcpkg.json` and `CMakePresets.json` to switch `qwt` dependency to `qwt-6-3-0-qt6` and enable `USE_QT6` environment variable Commit: adaa5f90545392fdf74a3f76281146b1f49ea877 https://github.com/ehb54/ultrascan3/commit/adaa5f90545392fdf74a3f76281146b1f49ea877 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-12 (Fri, 12 Dec 2025) Changed paths: M programs/us_fit_meniscus/CMakeLists.txt Log Message: ----------- Remove redundant `us_gui_static` dependency from `us_fit_meniscus` CMakeLists as already included in us_program_common Commit: 28970f647dfa973602f796e7db4dba84cfd53485 https://github.com/ehb54/ultrascan3/commit/28970f647dfa973602f796e7db4dba84cfd53485 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-12 (Fri, 12 Dec 2025) Changed paths: A buildsys/vcpkg/overlay-ports/qt5-tools/fix-pkgconfig-qt5uiplugin-not-found.patch A buildsys/vcpkg/overlay-ports/qt5-tools/fix-spawnvp-argv.patch A buildsys/vcpkg/overlay-ports/qt5-tools/libclang.patch A buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake A buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json Log Message: ----------- Add `qt5-tools` overlay port with vcpkg configuration, patches, and build options for `qdoc` and `libclang`. Commit: 51f4446a7d6c46e6e5bc231625d0f3598c64e0e8 https://github.com/ehb54/ultrascan3/commit/51f4446a7d6c46e6e5bc231625d0f3598c64e0e8 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-12 (Fri, 12 Dec 2025) Changed paths: M buildsys/vcpkg/overlay-ports/qwt-6-1-6/portfile.cmake Log Message: ----------- Comment out `REMOVE_RECURSE` directive for debug include files in `qwt-6-1-6` overlay port. Commit: 824917fd842361f25a320716b60f4d663c40d36f https://github.com/ehb54/ultrascan3/commit/824917fd842361f25a320716b60f4d663c40d36f Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-12 (Fri, 12 Dec 2025) Changed paths: M gui/us_buffer_gui.h M gui/us_convert_gui.h M gui/us_csv_loader.h M gui/us_experiment_gui.h M gui/us_get_run.h M gui/us_intensity.h M gui/us_select_triples.h M gui/us_selectbox.h Log Message: ----------- Mark GUI classes with `US_GUI_EXTERN` for consistent symbol export. Commit: fa485869e37155a7a3bd6abc2d8b62d3290b94e3 https://github.com/ehb54/ultrascan3/commit/fa485869e37155a7a3bd6abc2d8b62d3290b94e3 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-12 (Fri, 12 Dec 2025) Changed paths: M gui/CMakeLists.txt Log Message: ----------- Add GLU library linkage for Windows in GUI CMake configuration Commit: 7e1b604be12be95c4434659ce535bf7ec2f2b1f5 https://github.com/ehb54/ultrascan3/commit/7e1b604be12be95c4434659ce535bf7ec2f2b1f5 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-12 (Fri, 12 Dec 2025) Changed paths: M programs/CMakeLists.txt Log Message: ----------- Refactor `us_program_common` GUI linkage logic in CMake for better TARGET handling Prevent linking against static and dynamic us_gui library at the same time Commit: f09d400fba032d067a391cdb44bc8b24adfc62cd https://github.com/ehb54/ultrascan3/commit/f09d400fba032d067a391cdb44bc8b24adfc62cd Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-12 (Fri, 12 Dec 2025) Changed paths: M utils/us_convert.h M utils/us_convertio.h M utils/us_experiment.h Log Message: ----------- Mark utility classes with `US_UTIL_EXTERN` for consistent symbol export. Commit: d3e888e267c9caf78859338a6f1cf719327ad232 https://github.com/ehb54/ultrascan3/commit/d3e888e267c9caf78859338a6f1cf719327ad232 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2025-12-15 (Mon, 15 Dec 2025) Changed paths: M utils/us_xpn_data.cpp Log Message: ----------- Merge branch 'main' into lukas/qt6-compile Commit: df86df9039cb75f8b70c9f3cb92badd78dd35e1b https://github.com/ehb54/ultrascan3/commit/df86df9039cb75f8b70c9f3cb92badd78dd35e1b Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-16 (Tue, 16 Dec 2025) Changed paths: M programs/CMakeLists.txt Log Message: ----------- Refactor `us_program_common` CMake linkage for UltraScan3::Resources. Prevent compiler from dropping resources - Add support for `WHOLE_ARCHIVE` linking with CMake 3.24+ - Implement fallbacks for older CMake versions, including MSVC, Apple, and GNU toolchains. Commit: dce480bd9c76222754a2255a237d20ac5c3f261e https://github.com/ehb54/ultrascan3/commit/dce480bd9c76222754a2255a237d20ac5c3f261e Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-16 (Tue, 16 Dec 2025) Changed paths: M gui/CMakeLists.txt Log Message: ----------- - Add `us_utils` dependency to GUI CMake configuration - Update `target_link_libraries` for consistent usage of `UltraScan3::Utils` Commit: 0c53e87884daba86bbf95aa2933e8b49c0d5a6ec https://github.com/ehb54/ultrascan3/commit/0c53e87884daba86bbf95aa2933e8b49c0d5a6ec Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-16 (Tue, 16 Dec 2025) Changed paths: M gui/us_images.cpp M gui/us_images.h Log Message: ----------- Prevent unavailable images, in case the compiler dropped the resources by dynamically loading the image resource once(mutex protected) - Add `ensure_us3_gui_images_resources` to initialize resources in `US_Images` - Update image methods to ensure resources are loaded before use Commit: bffcbf60b9a2fc282367921d2a94834e17e20bd0 https://github.com/ehb54/ultrascan3/commit/bffcbf60b9a2fc282367921d2a94834e17e20bd0 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-16 (Tue, 16 Dec 2025) Changed paths: M utils/us_extern.h Log Message: ----------- Update symbol visibility macros for consistent exports for non windows builds to prevent visibility issues. - Add `__attribute__((visibility("default")))` for GCC/Clang support in `US_EXPORT` and `US_IMPORT`. - Update `US_UTIL_EXTERN` and `US_GUI_EXTERN` to utilize `US_EXPORT` for consistency. Commit: d9f790e9a362a42951e9673084733e3e75a7447a https://github.com/ehb54/ultrascan3/commit/d9f790e9a362a42951e9673084733e3e75a7447a Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-16 (Tue, 16 Dec 2025) Changed paths: M programs/us/us.cpp Log Message: ----------- - Safeguard against missing splash image by enforcing minimum dimensions. - Refactor splash screen rendering to use `QImage` for modern, flexible painting. - Ensure graceful handling when the splash image resource is unavailable. Commit: 11a7a7c669bebe3a734cbf8dbd09b73332f55e39 https://github.com/ehb54/ultrascan3/commit/11a7a7c669bebe3a734cbf8dbd09b73332f55e39 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-16 (Tue, 16 Dec 2025) Changed paths: M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake Log Message: ----------- Clean up unused compiler flags in qt5-tools portfile. Commit: 446270b10005ff9807a4bfc2ec2c3e4efde6ad18 https://github.com/ehb54/ultrascan3/commit/446270b10005ff9807a4bfc2ec2c3e4efde6ad18 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-16 (Tue, 16 Dec 2025) Changed paths: A admin/cmake/triplets/x64-mingw-dynamic.cmake Log Message: ----------- Add x64 MinGW dynamic triplet configuration for Vcpkg Commit: 6b0a884bca62b0406762f7868cbe06fc14cff07f https://github.com/ehb54/ultrascan3/commit/6b0a884bca62b0406762f7868cbe06fc14cff07f Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-16 (Tue, 16 Dec 2025) Changed paths: M gui/us_extinction_gui.cpp M gui/us_minimize.cpp M gui/us_new_spectrum.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_pseudo_absorbance/us_add_refScan.cpp M utils/us_analyte.cpp M utils/us_archive.cpp M utils/us_astfem_math.h M utils/us_astfem_rsa.cpp M utils/us_buffer.cpp M utils/us_extern.h M utils/us_gzip.cpp M utils/us_matrix.cpp M utils/us_solution.cpp M utils/us_solve_sim.cpp Log Message: ----------- - Replace `and`/`or` with standard logical operators `&&`/`||` for consistency and clarity. - Modernize usage of `QVector` for thread management and dynamic arrays. - Introduce portability enhancements for platform-specific file operations (`us_open`, `_unlink`, etc.). - Add missing header guards for floating-point limits (`FLT_MIN`/`FLT_MAX`). - Standardize debug error outputs with severity levels. Commit: b45e442ac95cf354da0c836fb3a70941b58de387 https://github.com/ehb54/ultrascan3/commit/b45e442ac95cf354da0c836fb3a70941b58de387 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-16 (Tue, 16 Dec 2025) Changed paths: M CMakeLists.txt M gui/CMakeLists.txt M qwtplot3d/CMakeLists.txt M utils/CMakeLists.txt Log Message: ----------- - Modernize and standardize CMake configuration - Add custom Vcpkg triplets and overlay ports for dynamic builds. - Refactor compiler flags and definitions for platform-specific optimizations. - Improve handling of debug options and static/dynamic library configurations. - Enhance Qwt library detection with support for both manual and unofficial configurations. - Introduce platform-specific linking and compile options for portability improvements. Commit: f1abbfab8dc3387d589172ab2defbf2d4349605e https://github.com/ehb54/ultrascan3/commit/f1abbfab8dc3387d589172ab2defbf2d4349605e Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-16 (Tue, 16 Dec 2025) Changed paths: M CMakeLists.txt Log Message: ----------- Toggle default library preference to shared in CMake configuration (`US3_PREFER_STATIC` set to OFF). Commit: 1d6b2a17ebace2b32b7a84a8656e3f43c9efa8b4 https://github.com/ehb54/ultrascan3/commit/1d6b2a17ebace2b32b7a84a8656e3f43c9efa8b4 Author: aaron-auc Date: 2025-12-17 (Wed, 17 Dec 2025) Changed paths: M programs/us/revision.sh Log Message: ----------- mod: revision script to use git commit date and time Commit: df7167edd6a9b16ffefe2e44baa1c668c1d55308 https://github.com/ehb54/ultrascan3/commit/df7167edd6a9b16ffefe2e44baa1c668c1d55308 Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2025-12-17 (Wed, 17 Dec 2025) Changed paths: M CMakeLists.txt M CMakePresets.json M programs/us/CMakeLists.txt M programs/us/us.cpp M scripts/build.sh Log Message: ----------- Merge branch 'main' into 670-bug-us_revisionh-dependency-issue Commit: 463a20612262393b49dd4ca80148e0c0fcbeb108 https://github.com/ehb54/ultrascan3/commit/463a20612262393b49dd4ca80148e0c0fcbeb108 Author: aaron-auc Date: 2025-12-17 (Wed, 17 Dec 2025) Changed paths: M CMakeLists.txt M admin/cmake/GenerateVersion.cmake M programs/us/revision.sh M programs/us/us.cpp Log Message: ----------- mod: cmake update to use git commit date and time Commit: 89f3f3c6557b041b72007f43decf13f661ceae2e https://github.com/ehb54/ultrascan3/commit/89f3f3c6557b041b72007f43decf13f661ceae2e Author: aaron-auc Date: 2025-12-17 (Wed, 17 Dec 2025) Changed paths: M programs/us/us.cpp Log Message: ----------- fix: filename reverted Commit: fa23140e88f25ada59996ff8f6496603dd6007ff https://github.com/ehb54/ultrascan3/commit/fa23140e88f25ada59996ff8f6496603dd6007ff Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2025-12-18 (Thu, 18 Dec 2025) Changed paths: M CMakeLists.txt M programs/us/CMakeLists.txt M programs/us/us.cpp M scripts/build.sh Log Message: ----------- Merge branch 'main' into lukas/qt6-compile Commit: 6d0e037362d1d3eee6b34d6c87fecb03ed56bc35 https://github.com/ehb54/ultrascan3/commit/6d0e037362d1d3eee6b34d6c87fecb03ed56bc35 Author: aaron-auc Date: 2025-12-18 (Thu, 18 Dec 2025) Changed paths: M admin/cmake/GenerateVersion.cmake M programs/us/revision.sh Log Message: ----------- fix: only show delta on tracked file changes Commit: 8cd2500e840339baf525a08fb150964ec3355fc0 https://github.com/ehb54/ultrascan3/commit/8cd2500e840339baf525a08fb150964ec3355fc0 Author: aaron-auc Date: 2025-12-18 (Thu, 18 Dec 2025) Changed paths: M CMakeLists.txt M programs/us/us.cpp Log Message: ----------- fix: check tracked file changes Commit: 107cb20eb507bf616842dd36d780663f6d20549a https://github.com/ehb54/ultrascan3/commit/107cb20eb507bf616842dd36d780663f6d20549a Author: aaron-auc Date: 2025-12-18 (Thu, 18 Dec 2025) Changed paths: M programs/us/us.cpp Log Message: ----------- fix: remove build term from splash Commit: 040225ce1b554cde2af83441f8507e05ef14962b https://github.com/ehb54/ultrascan3/commit/040225ce1b554cde2af83441f8507e05ef14962b Author: aaron-auc Date: 2025-12-18 (Thu, 18 Dec 2025) Changed paths: M admin/cmake/GenerateVersion.cmake M programs/us/revision.sh Log Message: ----------- fix: time was not in utc Commit: ef6f3bd3f96408decfe78facbf37acadc5834997 https://github.com/ehb54/ultrascan3/commit/ef6f3bd3f96408decfe78facbf37acadc5834997 Author: aaron-auc Date: 2025-12-18 (Thu, 18 Dec 2025) Changed paths: A etc/icons/make-icons.sh A etc/icons/us3-icon-master-512.png M etc/us3-icon-128x128.ico M etc/us3-icon-128x128.png M etc/us3-icon-32x32.png M etc/us3-icon-48x48.ico M etc/us3-icon-48x48.png M etc/us3-icon.icns M gui/images/us3-icon-128x128.png M gui/images/us3-icon-16x16.png M gui/images/us3-icon-256x256.png M gui/images/us3-icon-32x32.png M gui/images/us3-icon-48x48.png M gui/images/us3-icon-512x512.png M gui/images/us3-icon-64x64.png Log Message: ----------- mod: icons remove border Commit: b18cfde249b29b29b8733d537141a5ff3524407f https://github.com/ehb54/ultrascan3/commit/b18cfde249b29b29b8733d537141a5ff3524407f Author: aaron-auc Date: 2025-12-18 (Thu, 18 Dec 2025) Changed paths: M programs/us/us.cpp Log Message: ----------- mod: update about info Commit: df5ad6ee3ef0ca36aa3672b571d5cccea0856c20 https://github.com/ehb54/ultrascan3/commit/df5ad6ee3ef0ca36aa3672b571d5cccea0856c20 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-19 (Fri, 19 Dec 2025) Changed paths: M gui/CMakeLists.txt M gui/fix-mac-make.sh R gui/images.qrc M gui/libus_gui.pro M gui/qrc_make_adds.txt M gui/us_images.cpp Log Message: ----------- - Replace `images.qrc` with dynamically generated `us3_gui_images.qrc`. - Update build scripts and resource initialization to reference `us3_gui_images.qrc`. - Refactor resource handling to dynamically load and ensure `us3_gui_images` via mutex. Commit: 5b2c72b8ee1af841045b5f6f313d4a390fa6e786 https://github.com/ehb54/ultrascan3/commit/5b2c72b8ee1af841045b5f6f313d4a390fa6e786 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2025-12-19 (Fri, 19 Dec 2025) Changed paths: M gui/us_convert_gui.cpp Log Message: ----------- Change runType assignment from values to keys Commit: 002ebf147e17b71a02f0e188dcae6b32673bf8ed https://github.com/ehb54/ultrascan3/commit/002ebf147e17b71a02f0e188dcae6b32673bf8ed Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2025-12-19 (Fri, 19 Dec 2025) Changed paths: M programs/us_legacy_converter/us_legacy_converter.cpp Log Message: ----------- Change runtype assignment from values to keys Commit: 4fed5b3095bfd9af12a2b2847249679052409da9 https://github.com/ehb54/ultrascan3/commit/4fed5b3095bfd9af12a2b2847249679052409da9 Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2025-12-19 (Fri, 19 Dec 2025) Changed paths: M gui/us_convert_gui.cpp M programs/us_legacy_converter/us_legacy_converter.cpp Log Message: ----------- Merge pull request #338 from ehb54/lukas/legacy_data_import Fix import from legacy data Commit: d12fcee27d2fff7ad77065cf179b4e8d647f974c https://github.com/ehb54/ultrascan3/commit/d12fcee27d2fff7ad77065cf179b4e8d647f974c Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2025-12-19 (Fri, 19 Dec 2025) Changed paths: M gui/us_convert_gui.cpp M programs/us_legacy_converter/us_legacy_converter.cpp Log Message: ----------- Merge branch 'main' into lukas/qt6-compile Commit: 7c33cc761e271a6cb89b3002c67bfd0ac5f406c9 https://github.com/ehb54/ultrascan3/commit/7c33cc761e271a6cb89b3002c67bfd0ac5f406c9 Author: aaron-auc Date: 2025-12-20 (Sat, 20 Dec 2025) Changed paths: M programs/us/us.cpp Log Message: ----------- add: additional authors Commit: 81762adc9c91ecd4d3dc952103b1a5581d137609 https://github.com/ehb54/ultrascan3/commit/81762adc9c91ecd4d3dc952103b1a5581d137609 Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2025-12-20 (Sat, 20 Dec 2025) Changed paths: M gui/us_convert_gui.cpp M programs/us_legacy_converter/us_legacy_converter.cpp Log Message: ----------- Merge branch 'main' into 670-bug-us_revisionh-dependency-issue Commit: 4f98a669ba7fb1c53dcba4599de894533ddc8c57 https://github.com/ehb54/ultrascan3/commit/4f98a669ba7fb1c53dcba4599de894533ddc8c57 Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2025-12-22 (Mon, 22 Dec 2025) Changed paths: M CMakeLists.txt M admin/cmake/GenerateVersion.cmake M programs/us/revision.sh M programs/us/us.cpp Log Message: ----------- Merge pull request #336 from ehb54/670-bug-us_revisionh-dependency-issue git commit date and time Commit: bf5c7965f6f3cd30fdee0ceb9181c5b0b0e32cd6 https://github.com/ehb54/ultrascan3/commit/bf5c7965f6f3cd30fdee0ceb9181c5b0b0e32cd6 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2025-12-23 (Tue, 23 Dec 2025) Changed paths: M CMakeLists.txt M admin/cmake/GenerateVersion.cmake M programs/us/revision.sh M programs/us/us.cpp Log Message: ----------- Merge branch 'main' into lukas/qt6-compile Commit: aede93a36fbddcb60733fc4e45b3004b66b19a48 https://github.com/ehb54/ultrascan3/commit/aede93a36fbddcb60733fc4e45b3004b66b19a48 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-29 (Mon, 29 Dec 2025) Changed paths: M doc/manual/advanced_config.body M utils/us_db2.cpp M utils/us_db2.h Log Message: ----------- Refactor SSL configuration in `us_db2.cpp`: - Consolidate SSL setup logic into a new `configure_ssl` method. - Replace duplicate SSL configuration code with reusable function calls. - Introduce error handling improvements for SSL setup failures. - Update parameter naming for clarity (`error` ? `err`). - Update documentation and references to reflect changes. Commit: fcf3e8e8b9e4b5b5aa785821478f592275934728 https://github.com/ehb54/ultrascan3/commit/fcf3e8e8b9e4b5b5aa785821478f592275934728 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-29 (Mon, 29 Dec 2025) Changed paths: M utils/us_convert.h M utils/us_convertio.h M utils/us_experiment.h M utils/us_extern.h Log Message: ----------- Add `US_UTIL_EXTERN` for symbol export in utility classes and update platform-specific macros - Modify utility class declarations (`US_ConvertIO`, `US_Experiment`, `US_Convert`) to use `US_UTIL_EXTERN` for proper symbol visibility. - Update `us_extern.h` to define `US_EXPORT`, `US_IMPORT`, `US_UTIL_EXTERN`, and `US_GUI_EXTERN` with platform-specific logic (e.g., GCC/Clang). - Ensure uniform handling of visibility attributes for non-Windows platforms. Commit: f14b93b09219d242683cc79f118ed78165295074 https://github.com/ehb54/ultrascan3/commit/f14b93b09219d242683cc79f118ed78165295074 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-29 (Mon, 29 Dec 2025) Changed paths: M CMakeLists.txt Log Message: ----------- Add symbolic link creation for `etc` directory and enhance QWT and LibArchive handling in `CMakeLists.txt` Commit: a481bc52de8cafaf54b7ee05b3cbf34c9436ccf4 https://github.com/ehb54/ultrascan3/commit/a481bc52de8cafaf54b7ee05b3cbf34c9436ccf4 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-29 (Mon, 29 Dec 2025) Changed paths: M programs/CMakeLists.txt Log Message: ----------- Add dependencies for `us_program_common` to ensure proper build order in `CMakeLists.txt` Commit: 4330e56111ecdc006e03c30b0b7a5bb3f7224af0 https://github.com/ehb54/ultrascan3/commit/4330e56111ecdc006e03c30b0b7a5bb3f7224af0 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-29 (Mon, 29 Dec 2025) Changed paths: M gui/us_convert_gui.h M gui/us_experiment_gui.h M gui/us_get_run.h Log Message: ----------- Apply `US_GUI_EXTERN` to GUI class declarations for symbol export - Update `US_ExperimentGui`, `US_GetRun`, and `US_ConvertGui` to use `US_GUI_EXTERN` for improved symbol visibility across platforms. Commit: f719fc16c1a026b10e81214fe3eb53eceefcc9b3 https://github.com/ehb54/ultrascan3/commit/f719fc16c1a026b10e81214fe3eb53eceefcc9b3 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-29 (Mon, 29 Dec 2025) Changed paths: M gui/CMakeLists.txt Log Message: ----------- Add dependencies for `us_utils_static` in `CMakeLists.txt` based on build type Commit: 33e95b20a5d83c4901b1665caec7acef9fa29388 https://github.com/ehb54/ultrascan3/commit/33e95b20a5d83c4901b1665caec7acef9fa29388 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2025-12-29 (Mon, 29 Dec 2025) Changed paths: M utils/us_db2.cpp Log Message: ----------- Set minimum TLS version for database connection Add support for setting minimum TLS version to 1.2 in database connection. Commit: b2c3bf47409e753c9fc19a553f4443b14abe8ac5 https://github.com/ehb54/ultrascan3/commit/b2c3bf47409e753c9fc19a553f4443b14abe8ac5 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2025-12-29 (Mon, 29 Dec 2025) Changed paths: M utils/us_db2.cpp Log Message: ----------- Cleanup Commit: 67c9dc8ad7b8bf0a6c8a59f471aa11ef5e9f66d8 https://github.com/ehb54/ultrascan3/commit/67c9dc8ad7b8bf0a6c8a59f471aa11ef5e9f66d8 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2025-12-29 (Mon, 29 Dec 2025) Changed paths: M utils/ius_db2.h Log Message: ----------- Fix parameter name from 'error' to 'err' Commit: e7e29ef2a51a257c10d7ec02322012a83e9b8a6b https://github.com/ehb54/ultrascan3/commit/e7e29ef2a51a257c10d7ec02322012a83e9b8a6b Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-29 (Mon, 29 Dec 2025) Changed paths: M test/utils/test_us_simparms.cpp Log Message: ----------- Prevent accessing the second channel in a one channel centerpiece crashing the test Previously the test passed, because the missing etc files caused a flow in which no error was thrown. By symlinking the etc files properly, this caused now a crash Commit: 4f95fa8faa841098f4fadc4563e8b664c4d36ff0 https://github.com/ehb54/ultrascan3/commit/4f95fa8faa841098f4fadc4563e8b664c4d36ff0 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-29 (Mon, 29 Dec 2025) Changed paths: M test/utils/test_us_ana_profile.cpp Log Message: ----------- Fix tests crashing because of the scan_excl_nth being incorrectly initialized and updated. Enable skipped tests again Commit: c8038ba4c78146998ebf7d9e1d4a27e7923c4224 https://github.com/ehb54/ultrascan3/commit/c8038ba4c78146998ebf7d9e1d4a27e7923c4224 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-29 (Mon, 29 Dec 2025) Changed paths: M utils/CMakeLists.txt Log Message: ----------- Update `us_utils` to enforce symbol visibility and linking options in `CMakeLists.txt` - Add platform-specific `target_compile_options` and `target_link_options` for consistent symbol export behavior on UNIX and macOS. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 57c8faa142074cd9d1149d209ba558df01e04afc https://github.com/ehb54/ultrascan3/commit/57c8faa142074cd9d1149d209ba558df01e04afc Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-29 (Mon, 29 Dec 2025) Changed paths: M gui/us_analyte_gui.h M gui/us_buffer_gui.h M gui/us_csv_loader.h M gui/us_intensity.h M gui/us_new_spectrum.h M gui/us_plot.h M gui/us_project_gui.h M gui/us_sassoc.h M gui/us_select_triples.h M gui/us_selectbox.h M gui/us_solution_gui.h Log Message: ----------- Apply `US_GUI_EXTERN` for symbol export in GUI class declarations - Modify multiple GUI classes across headers to use `US_GUI_EXTERN` for improved symbol visibility and cross-platform compatibility. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: f5c7a43636c8b135356628aa4a5377c3a67c8d3c https://github.com/ehb54/ultrascan3/commit/f5c7a43636c8b135356628aa4a5377c3a67c8d3c Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-29 (Mon, 29 Dec 2025) Changed paths: M gui/CMakeLists.txt Log Message: ----------- Exclude qmake-generated files from GUI source list in `CMakeLists.txt` Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: abc1f5a67e0e5f4d76be0643a3b95f266bb188a2 https://github.com/ehb54/ultrascan3/commit/abc1f5a67e0e5f4d76be0643a3b95f266bb188a2 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-29 (Mon, 29 Dec 2025) Changed paths: M CMakeLists.txt Log Message: ----------- Add qmake-compatible compiler flags and optional LTO for Release builds in `CMakeLists.txt` Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 9f528bb04373eeae038dd1dded810eb09a4bffce https://github.com/ehb54/ultrascan3/commit/9f528bb04373eeae038dd1dded810eb09a4bffce Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-30 (Tue, 30 Dec 2025) Changed paths: M CMakeLists.txt M admin/cmake/GenerateVersion.cmake M gui/CMakeLists.txt M gui/fix-mac-make.sh R gui/images.qrc M gui/libus_gui.pro M gui/qrc_make_adds.txt M gui/us_convert_gui.cpp M gui/us_images.cpp M programs/us/CMakeLists.txt M programs/us/revision.sh M programs/us/us.cpp M programs/us_legacy_converter/us_legacy_converter.cpp M scripts/build.sh Log Message: ----------- Merge remote-tracking branch 'upstream/lukas/qt6-compile' into lukas/qt6-compile Commit: 1e5681139c0d0adaa2d2bdcccadac62e0bae14cc https://github.com/ehb54/ultrascan3/commit/1e5681139c0d0adaa2d2bdcccadac62e0bae14cc Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2025-12-30 (Tue, 30 Dec 2025) Changed paths: M CMakePresets.json Log Message: ----------- Add VCPKG_TARGET_TRIPLET for Linux dynamic build Commit: a6e20929d725c26226a09f3ee3eb6e316f6c7bca https://github.com/ehb54/ultrascan3/commit/a6e20929d725c26226a09f3ee3eb6e316f6c7bca Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2025-12-31 (Wed, 31 Dec 2025) Changed paths: M utils/us_db2.cpp Log Message: ----------- Refine TLS cipher suite definition for enhanced security and backward compatibility in `us_db2.cpp` Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 2f810aea610fcf3b7cb7a997124f039b15910e6c https://github.com/ehb54/ultrascan3/commit/2f810aea610fcf3b7cb7a997124f039b15910e6c Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-01-03 (Sat, 03 Jan 2026) Changed paths: M CMakeLists.txt M CMakePresets.json M doc/manual/advanced_config.body M gui/CMakeLists.txt M gui/us_analyte_gui.h M gui/us_buffer_gui.h M gui/us_convert_gui.h M gui/us_csv_loader.h M gui/us_experiment_gui.h M gui/us_get_run.h M gui/us_intensity.h M gui/us_new_spectrum.h M gui/us_plot.h M gui/us_project_gui.h M gui/us_sassoc.h M gui/us_select_triples.h M gui/us_selectbox.h M gui/us_solution_gui.h M programs/CMakeLists.txt M test/utils/test_us_ana_profile.cpp M test/utils/test_us_simparms.cpp M utils/CMakeLists.txt M utils/ius_db2.h M utils/us_convert.h M utils/us_convertio.h M utils/us_db2.cpp M utils/us_db2.h M utils/us_experiment.h M utils/us_extern.h Log Message: ----------- Merge pull request #339 from ehb54/lukas/db_connection Fix: Database Connection for newer Openssl versions, CMake Fixes backport from #300 Commit: 16fff1967916e35010b79c2cb31ce5dd7b6ad445 https://github.com/ehb54/ultrascan3/commit/16fff1967916e35010b79c2cb31ce5dd7b6ad445 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-01-04 (Sun, 04 Jan 2026) Changed paths: M CMakeLists.txt M doc/manual/advanced_config.body M gui/CMakeLists.txt M gui/us_analyte_gui.h M gui/us_buffer_gui.h M gui/us_new_spectrum.h M gui/us_plot.h M gui/us_project_gui.h M gui/us_sassoc.h M gui/us_selectbox.h M gui/us_solution_gui.h M programs/CMakeLists.txt M test/utils/test_us_ana_profile.cpp M test/utils/test_us_simparms.cpp M utils/CMakeLists.txt M utils/ius_db2.h M utils/us_db2.cpp M utils/us_db2.h Log Message: ----------- Merge branch 'main' into lukas/qt6-compile Commit: 0fff32bdf5c6c15bf3b0bf96bff3858766e852fb https://github.com/ehb54/ultrascan3/commit/0fff32bdf5c6c15bf3b0bf96bff3858766e852fb Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-01-04 (Sun, 04 Jan 2026) Changed paths: M CMakeLists.txt M doc/manual/advanced_config.body M gui/CMakeLists.txt M gui/us_analyte_gui.h M gui/us_buffer_gui.h M gui/us_new_spectrum.h M gui/us_plot.h M gui/us_project_gui.h M gui/us_sassoc.h M gui/us_selectbox.h M gui/us_solution_gui.h M programs/CMakeLists.txt M test/utils/test_us_ana_profile.cpp M test/utils/test_us_simparms.cpp M utils/CMakeLists.txt M utils/ius_db2.h M utils/us_db2.cpp M utils/us_db2.h Log Message: ----------- Merge remote-tracking branch 'upstream/lukas/qt6-compile' into lukas/qt6-compile # Conflicts: # CMakeLists.txt Commit: 097713e62433c13a0975a8293196807afdd01662 https://github.com/ehb54/ultrascan3/commit/097713e62433c13a0975a8293196807afdd01662 Author: alexsav815 Date: 2026-01-05 (Mon, 05 Jan 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- GMP: 4.EDIT -- when reading Apofile's data for Scan Exclusions, check that every nth scan not be 0 (or unset) as this cased crash; this is possible for earlier protocols ... Commit: 76602d4c7069e7ac4f15daa401a4141301be567f https://github.com/ehb54/ultrascan3/commit/76602d4c7069e7ac4f15daa401a4141301be567f Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-01-06 (Tue, 06 Jan 2026) Changed paths: M programs/us_config/us_font.cpp M programs/us_config/us_font.h Log Message: ----------- Rename QLabel variables to `lbl_` prefixed names for improved consistency in `us_font` files Commit: c5cb34c47426c0e89f1647e0c4ddf40b49bba8c6 https://github.com/ehb54/ultrascan3/commit/c5cb34c47426c0e89f1647e0c4ddf40b49bba8c6 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-01-06 (Tue, 06 Jan 2026) Changed paths: M programs/us_com_project/us_com_project_gui.h Log Message: ----------- Add conditional inclusion of `` for non-Windows platforms in `us_com_project_gui.h` Commit: 7e965475eb967de0e24a23b867b67eca4685713a https://github.com/ehb54/ultrascan3/commit/7e965475eb967de0e24a23b867b67eca4685713a Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-01-06 (Tue, 06 Jan 2026) Changed paths: M programs/us_experiment/us_experiment_gui_optima.h M programs/us_pcsa/us_pcsa.h M programs/us_protocol_dev/us_protocol_dev_gui.h Log Message: ----------- Add conditional inclusion of `` for non-Windows platforms across multiple GUI header files for cross-platform compatibility Commit: d7b2cf305764fd93ba923b2b98e9a436417ac9a4 https://github.com/ehb54/ultrascan3/commit/d7b2cf305764fd93ba923b2b98e9a436417ac9a4 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-01-06 (Tue, 06 Jan 2026) Changed paths: M programs/us_experiment/us_experiment_gui_optima.cpp Log Message: ----------- Comment out obsolete `#warning` directive in `us_experiment_gui_optima.cpp`. Commit: e943dc2efed0e478563fa973b843f70fc5ba105b https://github.com/ehb54/ultrascan3/commit/e943dc2efed0e478563fa973b843f70fc5ba105b Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-01-06 (Tue, 06 Jan 2026) Changed paths: M programs/us_fds_filemanager/us_fds_filemanager.cpp Log Message: ----------- Replace raw arrays with `QVector` in `us_fds_filemanager.cpp` for better safety and modern C++ compliance. Commit: 65b2c4babd29d6c22d7c987982d51584c12e9e18 https://github.com/ehb54/ultrascan3/commit/65b2c4babd29d6c22d7c987982d51584c12e9e18 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-01-06 (Tue, 06 Jan 2026) Changed paths: M programs/CMakeLists.txt Log Message: ----------- Add qwtplot3d library to CMakeLists.txt and define compile options for Windows Commit: d0403e79ea82d05f7f9d003d4163516a58258953 https://github.com/ehb54/ultrascan3/commit/d0403e79ea82d05f7f9d003d4163516a58258953 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-01-06 (Tue, 06 Jan 2026) Changed paths: M CMakePresets.json Log Message: ----------- Update `CMakePresets.json` to adjust MinGW conditions and set VCPKG triplet for Windows builds Commit: e8640132887a70936b99095e9102ce2986b71157 https://github.com/ehb54/ultrascan3/commit/e8640132887a70936b99095e9102ce2986b71157 Author: alexsav815 Date: 2026-01-06 (Tue, 06 Jan 2026) Changed paths: M gui/us_passwd.cpp Log Message: ----------- e-Sigs -- work on adding and passing reviewers' decision on GMP report's Approval/rejection during e-signing... Commit: 5d33eb2aef8c3f0f5a4a29b87448ad208d81984c https://github.com/ehb54/ultrascan3/commit/5d33eb2aef8c3f0f5a4a29b87448ad208d81984c Author: alexsav815 Date: 2026-01-06 (Tue, 06 Jan 2026) Changed paths: M gui/us_passwd.cpp M programs/us_esigner_gmp/us_esigner_gmp.cpp M programs/us_esigner_gmp/us_esigner_gmp.h Log Message: ----------- [MORE ]e-Sigs -- work on adding and passing reviewers' decision on GMP report's Approval/rejection during e-signing... Commit: 545ae8d4a3ff14a6e315409e923b9ca41076e9b6 https://github.com/ehb54/ultrascan3/commit/545ae8d4a3ff14a6e315409e923b9ca41076e9b6 Author: alexsav815 Date: 2026-01-06 (Tue, 06 Jan 2026) Changed paths: M programs/us_esigner_gmp/us_esigner_gmp.cpp Log Message: ----------- [MORE 2]e-Sigs -- work on adding and passing reviewers' decision on GMP report's Approval/rejection during e-signing... Commit: 5558bbe9b28475c555cb94973cef193f29f11804 https://github.com/ehb54/ultrascan3/commit/5558bbe9b28475c555cb94973cef193f29f11804 Author: alexsav815 Date: 2026-01-06 (Tue, 06 Jan 2026) Changed paths: M programs/us_esigner_gmp/us_esigner_gmp.cpp Log Message: ----------- [MORE 2a]e-Sigs -- work on adding and passing reviewers' decision on GMP report's Approval/rejection during e-signing... Commit: a136b59f67c8fda1ee6311db7c67cdb3517544ad https://github.com/ehb54/ultrascan3/commit/a136b59f67c8fda1ee6311db7c67cdb3517544ad Author: alexsav815 Date: 2026-01-06 (Tue, 06 Jan 2026) Changed paths: M programs/us_esigner_gmp/us_esigner_gmp.cpp Log Message: ----------- [MORE 3]e-Sigs -- work on adding and passing reviewers' decision on GMP report's Approval/rejection during e-signing... Commit: 3fb85fd790fba2583aed0262d1610aed737a512b https://github.com/ehb54/ultrascan3/commit/3fb85fd790fba2583aed0262d1610aed737a512b Author: alexsav815 Date: 2026-01-06 (Tue, 06 Jan 2026) Changed paths: M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp M programs/us_esigner_gmp/us_esigner_gmp.cpp Log Message: ----------- [MORE 3 Plus audit Trail]e-Sigs -- work on adding and passing reviewers' decision on GMP report's Approval/rejection during e-signing... Commit: 358fa3127df640b71b730a1a59a36c30ef57b35c https://github.com/ehb54/ultrascan3/commit/358fa3127df640b71b730a1a59a36c30ef57b35c Author: alexsav815 Date: 2026-01-06 (Tue, 06 Jan 2026) Changed paths: M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp Log Message: ----------- [MORE 5 Plus audit Trail]e-Sigs -- work on adding and passing reviewers' decision on GMP report's Approval/rejection during e-signing... Commit: 3c5adbaa5801cf489f6544623e8dc23ae51cd3aa https://github.com/ehb54/ultrascan3/commit/3c5adbaa5801cf489f6544623e8dc23ae51cd3aa Author: alexsav815 Date: 2026-01-06 (Tue, 06 Jan 2026) Changed paths: M programs/us_esigner_gmp/us_esigner_gmp.cpp Log Message: ----------- [MORE 6 Plus audit Trail]e-Sigs -- work on adding and passing reviewers' decision on GMP report's Approval/rejection during e-signing... Commit: 17fefbf81659578b2696e6810bc983a49dba5f16 https://github.com/ehb54/ultrascan3/commit/17fefbf81659578b2696e6810bc983a49dba5f16 Author: alexsav815 Date: 2026-01-06 (Tue, 06 Jan 2026) Changed paths: M programs/us_esigner_gmp/us_esigner_gmp.cpp Log Message: ----------- [MORE 7 Plus audit Trail & page pagination]e-Sigs -- work on adding and passing reviewers' decision on GMP report's Approval/rejection during e-signing... Commit: e72f2c1d666e58f670d0013e78ee4e271a5a09ea https://github.com/ehb54/ultrascan3/commit/e72f2c1d666e58f670d0013e78ee4e271a5a09ea Author: alexsav815 Date: 2026-01-06 (Tue, 06 Jan 2026) Changed paths: M programs/us_esigner_gmp/us_esigner_gmp.cpp Log Message: ----------- [MORE 8 Plus audit Trail & page pagination]e-Sigs -- work on adding and passing reviewers' decision on GMP report's Approval/rejection during e-signing... Commit: 7c2bec78b6a0198397031c56ec411a9252f04000 https://github.com/ehb54/ultrascan3/commit/7c2bec78b6a0198397031c56ec411a9252f04000 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-01-07 (Wed, 07 Jan 2026) Changed paths: M utils/us_gzip.cpp Log Message: ----------- Replace `_unlink` and `_chmod` with `unlink` and `chmod` for better cross-platform compatibility in `us_gzip.cpp`. Adjust Windows platform checks and migrate from `strcpy_s` to `qstrcpy`. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 81f59a21d854bfa0653cad7c542f1628fc95f5c0 https://github.com/ehb54/ultrascan3/commit/81f59a21d854bfa0653cad7c542f1628fc95f5c0 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-01-07 (Wed, 07 Jan 2026) Changed paths: M utils/us_gzip.cpp Log Message: ----------- Fix preprocessor directive syntax for Windows Commit: 7e2f5851c9e0ed47372d1a4dbaa935ea883e0344 https://github.com/ehb54/ultrascan3/commit/7e2f5851c9e0ed47372d1a4dbaa935ea883e0344 Author: alexsav815 Date: 2026-01-08 (Thu, 08 Jan 2026) Changed paths: M programs/us_com_project/us_com_project_gui.cpp M programs/us_com_project/us_com_project_gui.h Log Message: ----------- GMP | R&D programs -- ask user to confirm when exiting programs... Commit: 6ab3d3a27c0adc9dd654816240703b36ef05041a https://github.com/ehb54/ultrascan3/commit/6ab3d3a27c0adc9dd654816240703b36ef05041a Author: reecemartin48 <135046110+reecemartin48 at users.noreply.github.com> Date: 2026-01-09 (Fri, 09 Jan 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- Merge pull request #340 from ehb54/alexey-dev-issue683 GMP: 4.EDIT -- when reading Apofile's data for Scan Exclusions, check hat every nth scan not be 0? Commit: bf59fbfb33cc0ddcf42f5117bbff6eaef6036a21 https://github.com/ehb54/ultrascan3/commit/bf59fbfb33cc0ddcf42f5117bbff6eaef6036a21 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-01-09 (Fri, 09 Jan 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- Merge branch 'main' into lukas/qt6-compile Commit: aed7d9e140bfd8c59caf4d90b56d30499024e416 https://github.com/ehb54/ultrascan3/commit/aed7d9e140bfd8c59caf4d90b56d30499024e416 Author: alexsav815 Date: 2026-01-09 (Fri, 09 Jan 2026) Changed paths: M programs/us_com_project/us_com_project_gui.cpp Log Message: ----------- [1]GMP | R&D programs -- ask user to confirm when exiting programs... Commit: ba140a214b0d6d3fc51e620ce4ff61a50b60e25b https://github.com/ehb54/ultrascan3/commit/ba140a214b0d6d3fc51e620ce4ff61a50b60e25b Author: alexsav815 Date: 2026-01-09 (Fri, 09 Jan 2026) Changed paths: M programs/us_reporter_gmp/us_reporter_gmp.cpp Log Message: ----------- GMP REPORTER -- remove words GMP/non-GMP from the report's title... Commit: 67bed35c012990f32e1177e301a57f38a0be05cb https://github.com/ehb54/ultrascan3/commit/67bed35c012990f32e1177e301a57f38a0be05cb Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-01-12 (Mon, 12 Jan 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- Merge branch 'main' into alexey-dev-issue685 Commit: f2bcdfb5fcaaa18ac852db80e31ae2ae040ce293 https://github.com/ehb54/ultrascan3/commit/f2bcdfb5fcaaa18ac852db80e31ae2ae040ce293 Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-01-12 (Mon, 12 Jan 2026) Changed paths: M gui/us_passwd.cpp M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp M programs/us_esigner_gmp/us_esigner_gmp.cpp M programs/us_esigner_gmp/us_esigner_gmp.h M programs/us_reporter_gmp/us_reporter_gmp.cpp Log Message: ----------- Merge pull request #342 from ehb54/alexey-dev-issue685 Ability to Approve/Reject GMP Report Commit: 02db8f53be150d60db90c37a4e0c475cd504f56f https://github.com/ehb54/ultrascan3/commit/02db8f53be150d60db90c37a4e0c475cd504f56f Author: alexsav815 Date: 2026-01-12 (Mon, 12 Jan 2026) Changed paths: M programs/us_experiment/us_experiment_gui_optima.cpp M utils/us_run_protocol.cpp M utils/us_run_protocol.h Log Message: ----------- GMP | R&D -- work towards reusing R&D protocols in the GMP framework... Commit: 6566c1e0ad133c8c15008fd0e2f4a43859041b55 https://github.com/ehb54/ultrascan3/commit/6566c1e0ad133c8c15008fd0e2f4a43859041b55 Author: alexsav815 Date: 2026-01-12 (Mon, 12 Jan 2026) Changed paths: M gui/us_passwd.cpp M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp M programs/us_esigner_gmp/us_esigner_gmp.cpp M programs/us_esigner_gmp/us_esigner_gmp.h M programs/us_reporter_gmp/us_reporter_gmp.cpp Log Message: ----------- Merge pull request #343 from ehb54/main Mergre main into alexey-dev-issue686 Commit: 7a461d6cea4628319290da95d5c6c492351180d5 https://github.com/ehb54/ultrascan3/commit/7a461d6cea4628319290da95d5c6c492351180d5 Author: alexsav815 Date: 2026-01-12 (Mon, 12 Jan 2026) Changed paths: M programs/us_experiment/us_experiment_gui_optima.cpp M utils/us_run_protocol.cpp Log Message: ----------- [1]GMP | R&D -- work towards reusing R&D protocols in the GMP framework... Commit: 62a2f6d78b1b3a37da1c632202cdd1636a4f4675 https://github.com/ehb54/ultrascan3/commit/62a2f6d78b1b3a37da1c632202cdd1636a4f4675 Author: alexsav815 Date: 2026-01-12 (Mon, 12 Jan 2026) Changed paths: M programs/us_experiment/us_experiment_gui_optima.cpp Log Message: ----------- [2]GMP | R&D -- work towards reusing R&D protocols in the GMP framework... Commit: 8ecfc1e4707734ef1629523538d1f29fb3c746d4 https://github.com/ehb54/ultrascan3/commit/8ecfc1e4707734ef1629523538d1f29fb3c746d4 Author: alexsav815 Date: 2026-01-12 (Mon, 12 Jan 2026) Changed paths: M programs/us_experiment/us_experiment_gui_optima.cpp Log Message: ----------- [3]GMP | R&D -- work towards reusing R&D protocols in the GMP framework... Commit: 80b29b38504deabfcb19d6fdbbb717792d272854 https://github.com/ehb54/ultrascan3/commit/80b29b38504deabfcb19d6fdbbb717792d272854 Author: alexsav815 Date: 2026-01-12 (Mon, 12 Jan 2026) Changed paths: M programs/us_experiment/us_experiment_gui_optima.cpp Log Message: ----------- [3a]GMP | R&D -- work towards reusing R&D protocols in the GMP framework... Commit: bd65902237ae82e5d31925e019e8f9e46b8a82f1 https://github.com/ehb54/ultrascan3/commit/bd65902237ae82e5d31925e019e8f9e46b8a82f1 Author: alexsav815 Date: 2026-01-12 (Mon, 12 Jan 2026) Changed paths: M programs/us_experiment/us_experiment_gui_optima.cpp Log Message: ----------- [4]GMP | R&D -- work towards reusing R&D protocols in the GMP framework... Commit: 7dbe9b8fd7641fa17a63d54c921656eeb30d5fd3 https://github.com/ehb54/ultrascan3/commit/7dbe9b8fd7641fa17a63d54c921656eeb30d5fd3 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-01-13 (Tue, 13 Jan 2026) Changed paths: M gui/us_passwd.cpp M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp M programs/us_esigner_gmp/us_esigner_gmp.cpp M programs/us_esigner_gmp/us_esigner_gmp.h M programs/us_reporter_gmp/us_reporter_gmp.cpp Log Message: ----------- Merge branch 'main' into lukas/qt6-compile Commit: 99f7a546ebbe56580b7a5acbdcc6f1a44846f48c https://github.com/ehb54/ultrascan3/commit/99f7a546ebbe56580b7a5acbdcc6f1a44846f48c Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-01-13 (Tue, 13 Jan 2026) Changed paths: M vcpkg.json Log Message: ----------- Modify libmariadb entry in vcpkg.json Updated libmariadb entry to include OpenSSL feature. Commit: d6d2c153d89a845bbb50690d1899b07822d11881 https://github.com/ehb54/ultrascan3/commit/d6d2c153d89a845bbb50690d1899b07822d11881 Author: alexsav815 Date: 2026-01-13 (Tue, 13 Jan 2026) Changed paths: M programs/us_experiment/us_experiment_gui_optima.cpp Log Message: ----------- [5]GMP | R&D -- work towards reusing R&D protocols in the GMP framework... Commit: c9ffc7bb6a1b7994c962acc20945815e005d7613 https://github.com/ehb54/ultrascan3/commit/c9ffc7bb6a1b7994c962acc20945815e005d7613 Author: alexsav815 Date: 2026-01-13 (Tue, 13 Jan 2026) Changed paths: M programs/us_experiment/us_experiment_gui_optima.cpp Log Message: ----------- [5a]GMP | R&D -- work towards reusing R&D protocols in the GMP framework... Commit: d2f2efb71959e6ff1b77154dc50f8c96f466c3c1 https://github.com/ehb54/ultrascan3/commit/d2f2efb71959e6ff1b77154dc50f8c96f466c3c1 Author: alexsav815 Date: 2026-01-13 (Tue, 13 Jan 2026) Changed paths: M programs/us_experiment/us_experiment_gui_optima.cpp Log Message: ----------- [5b]GMP | R&D -- work towards reusing R&D protocols in the GMP framework... Commit: bdbf60172638a38747bb896bbfa77852048c6975 https://github.com/ehb54/ultrascan3/commit/bdbf60172638a38747bb896bbfa77852048c6975 Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-01-13 (Tue, 13 Jan 2026) Changed paths: M programs/us_experiment/us_experiment_gui_optima.cpp M utils/us_run_protocol.cpp M utils/us_run_protocol.h Log Message: ----------- Merge pull request #345 from ehb54/alexey-dev-issue686 Re-using R&D protocols within GMP framework Commit: 04998c2c159ca9f4460261a09011f715b9ded19e https://github.com/ehb54/ultrascan3/commit/04998c2c159ca9f4460261a09011f715b9ded19e Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-01-14 (Wed, 14 Jan 2026) Changed paths: M programs/us_experiment/us_experiment_gui_optima.cpp M utils/us_run_protocol.cpp M utils/us_run_protocol.h Log Message: ----------- Merge branch 'main' into lukas/qt6-compile Commit: 9752dedd7ae38964191197fad9f8eaeb9202531e https://github.com/ehb54/ultrascan3/commit/9752dedd7ae38964191197fad9f8eaeb9202531e Author: alexsav815 Date: 2026-01-14 (Wed, 14 Jan 2026) Changed paths: M gui/us_passwd.cpp M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp M programs/us_edit/us_edit.cpp M programs/us_esigner_gmp/us_esigner_gmp.cpp M programs/us_esigner_gmp/us_esigner_gmp.h M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_reporter_gmp/us_reporter_gmp.cpp M utils/us_run_protocol.cpp M utils/us_run_protocol.h Log Message: ----------- Merge pull request #346 from ehb54/main Mearging main into alexey-dev-issue678 Commit: 757ef23c2df62c066267d68db70f6fc9703a0a8e https://github.com/ehb54/ultrascan3/commit/757ef23c2df62c066267d68db70f6fc9703a0a8e Author: alexsav815 Date: 2026-01-15 (Thu, 15 Jan 2026) Changed paths: M programs/us_com_project/us_com_project_gui.cpp Log Message: ----------- [2]GMP | R&D programs -- ask user to confirm when exiting programs... Commit: bcfaf8d580319bb94d276b9d596e151a25a3073c https://github.com/ehb54/ultrascan3/commit/bcfaf8d580319bb94d276b9d596e151a25a3073c Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-01-16 (Fri, 16 Jan 2026) Changed paths: M programs/us_com_project/us_com_project_gui.cpp M programs/us_com_project/us_com_project_gui.h Log Message: ----------- Merge pull request #341 from ehb54/alexey-dev-issue678 GMP | R&D programs -- ask user to confirm when exiting programs... Commit: 582f7ac94ec640640bd27629202501de235af605 https://github.com/ehb54/ultrascan3/commit/582f7ac94ec640640bd27629202501de235af605 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-01-16 (Fri, 16 Jan 2026) Changed paths: M programs/us_com_project/us_com_project_gui.cpp M programs/us_com_project/us_com_project_gui.h Log Message: ----------- Merge branch 'main' into lukas/qt6-compile Commit: b7ef6c746a0255676ccbfb6b665b6333622e83d4 https://github.com/ehb54/ultrascan3/commit/b7ef6c746a0255676ccbfb6b665b6333622e83d4 Author: Saeed Date: 2026-01-19 (Mon, 19 Jan 2026) Changed paths: M programs/us_integral/us_integral.cpp M programs/us_integral/us_integral.h Log Message: ----------- us_integral: added vbar distro Commit: c013ad257122d7f5757b2be16917f314b10b7ffc https://github.com/ehb54/ultrascan3/commit/c013ad257122d7f5757b2be16917f314b10b7ffc Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-01-21 (Wed, 21 Jan 2026) Changed paths: M programs/us_com_project/us_com_project_gui.cpp M programs/us_com_project/us_com_project_gui.h M programs/us_experiment/us_experiment_gui_optima.cpp M utils/us_run_protocol.cpp M utils/us_run_protocol.h Log Message: ----------- Merge branch 'main' into lukas/db_connection_windows_vcpkg Commit: 766ea78bd149f180ca7b2a9369bd3382148de76b https://github.com/ehb54/ultrascan3/commit/766ea78bd149f180ca7b2a9369bd3382148de76b Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-01-22 (Thu, 22 Jan 2026) Changed paths: M vcpkg.json Log Message: ----------- Merge pull request #344 from ehb54/lukas/db_connection_windows_vcpkg Modify libmariadb entry in vcpkg.json Commit: cd149cc300c321fffa47638394bd915a7ca258c9 https://github.com/ehb54/ultrascan3/commit/cd149cc300c321fffa47638394bd915a7ca258c9 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-01-22 (Thu, 22 Jan 2026) Changed paths: M vcpkg.json Log Message: ----------- Merge branch 'main' into lukas/qt6-compile Commit: 209dba0c4bb17c8a404318b57d5826131665157f https://github.com/ehb54/ultrascan3/commit/209dba0c4bb17c8a404318b57d5826131665157f Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-01-22 (Thu, 22 Jan 2026) Changed paths: M .github/workflows/codeql-analysis.yml M CMakeLists.txt M CMakePresets.json M admin/cmake/FindQwt.cmake A admin/cmake/triplets/x64-mingw-dynamic.cmake A buildsys/vcpkg/overlay-ports/qt5-multimedia/drop-wmf-plugin.patch A buildsys/vcpkg/overlay-ports/qt5-multimedia/portfile.cmake A buildsys/vcpkg/overlay-ports/qt5-multimedia/vcpkg.json A buildsys/vcpkg/overlay-ports/qt5-tools/fix-pkgconfig-qt5uiplugin-not-found.patch A buildsys/vcpkg/overlay-ports/qt5-tools/fix-spawnvp-argv.patch A buildsys/vcpkg/overlay-ports/qt5-tools/libclang.patch A buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake A buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json A buildsys/vcpkg/overlay-ports/qwt-6-1-6/portfile.cmake A buildsys/vcpkg/overlay-ports/qwt-6-1-6/vcpkg.json A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/config.patch A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/fix_dll_install.patch A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/portfile.cmake A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/unofficial-qwt-config.cmake A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/vcpkg.json A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/config.patch A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/fix_dll_install.patch A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/unofficial-qwt-config.cmake A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/vcpkg.json R buildsys/vcpkg/overlay-ports/qwt/portfile.cmake R buildsys/vcpkg/overlay-ports/qwt/vcpkg.json A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-1-6-qt5/portfile.cmake A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-1-6-qt5/qwtplot3d-config.cmake.in A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-1-6-qt5/vcpkg.json A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt5/portfile.cmake A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt5/qwtplot3d-config.cmake.in A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt5/vcpkg.json A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt6/portfile.cmake A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt6/qwtplot3d-config.cmake.in A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt6/vcpkg.json R buildsys/vcpkg/overlay-ports/qwtplot3d/portfile.cmake R buildsys/vcpkg/overlay-ports/qwtplot3d/qwtplot3d-config.cmake.in R buildsys/vcpkg/overlay-ports/qwtplot3d/vcpkg.json M gui.pri M gui/CMakeLists.txt M gui/fix-mac-make.sh R gui/images.qrc M gui/libus_gui.pro M gui/qrc_make_adds.txt M gui/us_analysis_base2.cpp M gui/us_analyte_gui.cpp M gui/us_buffer_gui.cpp M gui/us_convert_gui.cpp M gui/us_convert_gui.h M gui/us_csv_loader.cpp M gui/us_extinctfitter_gui.cpp M gui/us_extinction_gui.cpp M gui/us_get_run.cpp M gui/us_gui_util.cpp M gui/us_images.cpp M gui/us_images.h M gui/us_investigator.cpp M gui/us_license.cpp M gui/us_minimize.cpp M gui/us_model_gui.cpp M gui/us_model_loader.cpp M gui/us_mwl_data.cpp M gui/us_new_spectrum.cpp M gui/us_plot.cpp M gui/us_plot.h M gui/us_plot3d.cpp M gui/us_plot3d.h M gui/us_predict1.cpp M gui/us_predict1.h M gui/us_run_details2.cpp M gui/us_sassoc.cpp M gui/us_sassoc.h M gui/us_solution_gui.cpp M gui/us_spectrodata.cpp M gui/us_spectrodata.h M gui/us_widgets.h M makeall.sh M programs/CMakeLists.txt M programs/main1.inc M programs/us/us.cpp M programs/us_2dsa/us_2dsa.cpp M programs/us_2dsa/us_show_norm.cpp M programs/us_abde/us_abde_main.cpp M programs/us_abde/us_norm_profile.cpp M programs/us_abde/us_norm_profile.h M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_analysis_profile/us_analysis_profile.h M programs/us_astfem_sim/us_astfem_sim.cpp M programs/us_autoflow_analysis/CMakeLists.txt M programs/us_autoflow_analysis/us_autoflow_analysis.cpp M programs/us_autoflow_analysis/us_autoflow_analysis.h M programs/us_buoyancy/us_buoyancy.cpp M programs/us_buoyancy/us_buoyancy.h M programs/us_colorgradient/us_colorgradient.cpp M programs/us_com_project/CMakeLists.txt M programs/us_com_project/us_com_project_gui.h M programs/us_com_project_academic/CMakeLists.txt M programs/us_combine_models/us_combine_models.cpp M programs/us_config/us_color.cpp M programs/us_config/us_font.cpp M programs/us_config/us_font.h M programs/us_config/us_newxpnhost_db.cpp M programs/us_config/us_xpnhost_db.cpp M programs/us_dcdt/us_dcdt.cpp M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_density_match/us_density_match.cpp M programs/us_dmga_init/us_dmga_init.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h M programs/us_edit/us_edit_scan.cpp M programs/us_edit/us_edit_scan.h M programs/us_esigner_gmp/us_esigner_gmp.cpp M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp M programs/us_export_legacy/us_export.cpp M programs/us_fds_filemanager/us_fds_filemanager.cpp M programs/us_fematch/CMakeLists.txt M programs/us_fematch/us_fematch.cpp M programs/us_fematch/us_plot_control_fem.cpp M programs/us_fematch/us_plot_control_fem.h M programs/us_fit_meniscus/CMakeLists.txt M programs/us_fit_meniscus/us_fit_meniscus.cpp M programs/us_fit_meniscus/us_fit_meniscus.h M programs/us_ga_init/us_ga_init.cpp M programs/us_ga_init/us_ga_init.h M programs/us_globalequil/us_eqfit_control.cpp M programs/us_globalequil/us_eqhistogram.cpp M programs/us_globalequil/us_eqmath.cpp M programs/us_globalequil/us_eqmodel_control.cpp M programs/us_globalequil/us_eqreporter.cpp M programs/us_globalequil/us_fit_worker.cpp M programs/us_globalequil/us_globalequil.cpp M programs/us_globalequil/us_globalequil.h M programs/us_grid_editor/us_grid_editor.cpp M programs/us_integral/us_integral.cpp M programs/us_legacy_converter/us_legacy_converter.cpp M programs/us_manage_data/us_data_model.cpp M programs/us_modelmetrics/us_modelmetrics.cpp M programs/us_mwl_species_fit/CMakeLists.txt M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h M programs/us_mwl_species_fit/us_mwl_species_fit.cpp M programs/us_mwl_spectra/us_mwl_spectra.cpp M programs/us_mwl_spectra/us_mwls_pltctl.cpp M programs/us_mwl_spectra/us_mwls_pltctl.h M programs/us_mwlr_viewer/us_mwl_pltctrl.cpp M programs/us_mwlr_viewer/us_mwl_pltctrl.h M programs/us_mwlr_viewer/us_mwlr_viewer.cpp M programs/us_pcsa/us_mlplot.cpp M programs/us_pcsa/us_mrecs_loader.cpp M programs/us_pcsa/us_pcsa.cpp M programs/us_pcsa/us_pcsa.h M programs/us_pcsa/us_rpscan.cpp M programs/us_pcsa/us_rpscan.h M programs/us_protocol_dev/CMakeLists.txt M programs/us_protocol_dev/us_protocol_dev_gui.h M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp M programs/us_pseudo_absorbance/us_add_refScan.cpp M programs/us_pseudo_absorbance/us_convert_scan.cpp M programs/us_pseudo_absorbance/us_convert_scan.h M programs/us_pseudo_absorbance/us_pseudo_absorbance.cpp M programs/us_pseudo_absorbance/us_remove_ri.cpp M programs/us_pseudo_absorbance/us_remove_ri.h M programs/us_query_rmsd/CMakeLists.txt M programs/us_query_rmsd/us_query_rmsd.cpp M programs/us_ramp/us_experiment_ra.cpp M programs/us_ramp/us_get_dbrun_ra.cpp M programs/us_ramp/us_mwlramp.cpp M programs/us_ramp/us_ramp.cpp M programs/us_ramp/us_ramp_gui.cpp M programs/us_ramp/us_ramp_gui.h M programs/us_reporter_gmp/CMakeLists.txt M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_rotor_calibration/us_rotor_calibration.cpp M programs/us_rotor_calibration/us_rotor_calibration.h M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h M programs/us_vhw_combine/us_vhw_combine.cpp M programs/us_vhw_combine/us_vhwc_pltctl.cpp M programs/us_vhw_combine/us_vhwc_pltctl.h M programs/us_vhw_enhanced/us_distrib_plot.cpp M programs/us_vhw_enhanced/us_vhw_enhanced.cpp M programs/us_vhw_enhanced/us_vhw_enhanced.h M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp M programs/us_xpn_viewer/us_xpn_viewer_gui.h M qwtplot3d/CMakeLists.txt M qwtplot3d/include/qwt3d_io_gl2ps.h M qwtplot3d/include/qwt3d_openglhelper.h M qwtplot3d/include/qwt3d_plot.h M qwtplot3d/include/qwt3d_surfaceplot.h M qwtplot3d/qwtplot3d.pro M qwtplot3d/src/qwt3d_io.cpp M qwtplot3d/src/qwt3d_io_gl2ps.cpp M qwtplot3d/src/qwt3d_label.cpp M qwtplot3d/src/qwt3d_lighting.cpp M qwtplot3d/src/qwt3d_movements.cpp M qwtplot3d/src/qwt3d_plot.cpp M qwtplot3d/src/qwt3d_surfaceplot.cpp M test/utils/CMakeLists.txt M utils/CMakeLists.txt M utils/libus_utils.pro M utils/us_ana_profile.cpp M utils/us_ana_profile.h M utils/us_analyte.cpp M utils/us_analyte.h M utils/us_archive.cpp M utils/us_archive.h M utils/us_astfem_math.cpp M utils/us_astfem_math.h M utils/us_astfem_rsa.cpp M utils/us_astfem_rsa.h M utils/us_buffer.cpp M utils/us_buffer.h M utils/us_cfa_data.cpp M utils/us_cfa_data.h M utils/us_constants.cpp M utils/us_constants.h M utils/us_convert.cpp M utils/us_convert.h M utils/us_convertio.cpp M utils/us_convertio.h M utils/us_crc.cpp M utils/us_crc.h M utils/us_crypto.cpp M utils/us_crypto.h M utils/us_csv_data.cpp M utils/us_csv_data.h M utils/us_dataIO.cpp M utils/us_dataIO.h M utils/us_datafiles.cpp M utils/us_datafiles.h M utils/us_db2.cpp M utils/us_db2.h M utils/us_dmga_constr.cpp M utils/us_eprofile.h M utils/us_experiment.cpp M utils/us_extern.h M utils/us_geturl.cpp M utils/us_geturl.h M utils/us_global.cpp M utils/us_global.h M utils/us_gzip.cpp M utils/us_gzip.h M utils/us_hardware.h M utils/us_http_post.h M utils/us_hydrosim.cpp M utils/us_hydrosim.h M utils/us_lamm_astfvm.cpp M utils/us_lamm_astfvm.h M utils/us_license_t.cpp M utils/us_license_t.h M utils/us_link_ssl.cpp M utils/us_link_ssl.h M utils/us_lm.cpp M utils/us_local_server.cpp M utils/us_local_server.h M utils/us_math2.cpp M utils/us_math2.h M utils/us_matrix.cpp M utils/us_matrix.h M utils/us_memory.cpp M utils/us_memory.h M utils/us_model.cpp M utils/us_model.h M utils/us_noise.cpp M utils/us_noise.h M utils/us_pcsa_modelrec.cpp M utils/us_pcsa_modelrec.h M utils/us_project.cpp M utils/us_protocol_util.cpp M utils/us_protocol_util.h M utils/us_report.cpp M utils/us_report.h M utils/us_report_gmp.cpp M utils/us_rotor.cpp M utils/us_run_protocol.cpp M utils/us_run_protocol.h M utils/us_settings.cpp M utils/us_settings.h M utils/us_simparms.cpp M utils/us_simparms.h M utils/us_sleep.h M utils/us_solute.cpp M utils/us_solute.h M utils/us_solution.cpp M utils/us_solution.h M utils/us_solution_vals.h M utils/us_solve_sim.cpp M utils/us_stiffbase.cpp M utils/us_stiffbase.h M utils/us_tar.cpp M utils/us_tar.h M utils/us_time_state.h M utils/us_timer.cpp M utils/us_timer.h M utils/us_util.cpp M utils/us_util.h A utils/us_utils_qt.h M utils/us_vector.cpp M utils/us_vector.h M utils/us_xpn_data.cpp M utils/us_xpn_data.h M utils/us_zsolute.cpp M utils/us_zsolute.h M vcpkg.json Log Message: ----------- Merge pull request #300 from ehb54/lukas/qt6-compile Update ultrascan to build with qt5.15.10+ or qt6.8.+ and qwt6.1.6 or qwt6.3.0 Commit: edfe3d93736f4d21d05015dba6216a7c07cfb618 https://github.com/ehb54/ultrascan3/commit/edfe3d93736f4d21d05015dba6216a7c07cfb618 Author: Saeed Date: 2026-01-22 (Thu, 22 Jan 2026) Changed paths: M programs/us_integral/us_integral.cpp M programs/us_integral/us_integral.h Log Message: ----------- add R(h) rb Commit: 101862e8adaad3ad184dd77cd388423c467368a7 https://github.com/ehb54/ultrascan3/commit/101862e8adaad3ad184dd77cd388423c467368a7 Author: Saeed Date: 2026-01-22 (Thu, 22 Jan 2026) Changed paths: M .github/workflows/codeql-analysis.yml M CMakeLists.txt M CMakePresets.json M admin/cmake/FindQwt.cmake A admin/cmake/triplets/x64-mingw-dynamic.cmake A buildsys/vcpkg/overlay-ports/qt5-multimedia/drop-wmf-plugin.patch A buildsys/vcpkg/overlay-ports/qt5-multimedia/portfile.cmake A buildsys/vcpkg/overlay-ports/qt5-multimedia/vcpkg.json A buildsys/vcpkg/overlay-ports/qt5-tools/fix-pkgconfig-qt5uiplugin-not-found.patch A buildsys/vcpkg/overlay-ports/qt5-tools/fix-spawnvp-argv.patch A buildsys/vcpkg/overlay-ports/qt5-tools/libclang.patch A buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake A buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json A buildsys/vcpkg/overlay-ports/qwt-6-1-6/portfile.cmake A buildsys/vcpkg/overlay-ports/qwt-6-1-6/vcpkg.json A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/config.patch A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/fix_dll_install.patch A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/portfile.cmake A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/unofficial-qwt-config.cmake A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/vcpkg.json A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/config.patch A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/fix_dll_install.patch A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/unofficial-qwt-config.cmake A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/vcpkg.json R buildsys/vcpkg/overlay-ports/qwt/portfile.cmake R buildsys/vcpkg/overlay-ports/qwt/vcpkg.json A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-1-6-qt5/portfile.cmake A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-1-6-qt5/qwtplot3d-config.cmake.in A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-1-6-qt5/vcpkg.json A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt5/portfile.cmake A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt5/qwtplot3d-config.cmake.in A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt5/vcpkg.json A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt6/portfile.cmake A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt6/qwtplot3d-config.cmake.in A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt6/vcpkg.json R buildsys/vcpkg/overlay-ports/qwtplot3d/portfile.cmake R buildsys/vcpkg/overlay-ports/qwtplot3d/qwtplot3d-config.cmake.in R buildsys/vcpkg/overlay-ports/qwtplot3d/vcpkg.json M gui.pri M gui/CMakeLists.txt M gui/fix-mac-make.sh R gui/images.qrc M gui/libus_gui.pro M gui/qrc_make_adds.txt M gui/us_analysis_base2.cpp M gui/us_analyte_gui.cpp M gui/us_buffer_gui.cpp M gui/us_convert_gui.cpp M gui/us_convert_gui.h M gui/us_csv_loader.cpp M gui/us_extinctfitter_gui.cpp M gui/us_extinction_gui.cpp M gui/us_get_run.cpp M gui/us_gui_util.cpp M gui/us_images.cpp M gui/us_images.h M gui/us_investigator.cpp M gui/us_license.cpp M gui/us_minimize.cpp M gui/us_model_gui.cpp M gui/us_model_loader.cpp M gui/us_mwl_data.cpp M gui/us_new_spectrum.cpp M gui/us_plot.cpp M gui/us_plot.h M gui/us_plot3d.cpp M gui/us_plot3d.h M gui/us_predict1.cpp M gui/us_predict1.h M gui/us_run_details2.cpp M gui/us_sassoc.cpp M gui/us_sassoc.h M gui/us_solution_gui.cpp M gui/us_spectrodata.cpp M gui/us_spectrodata.h M gui/us_widgets.h M makeall.sh M programs/CMakeLists.txt M programs/main1.inc M programs/us/us.cpp M programs/us_2dsa/us_2dsa.cpp M programs/us_2dsa/us_show_norm.cpp M programs/us_abde/us_abde_main.cpp M programs/us_abde/us_norm_profile.cpp M programs/us_abde/us_norm_profile.h M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_analysis_profile/us_analysis_profile.h M programs/us_astfem_sim/us_astfem_sim.cpp M programs/us_autoflow_analysis/CMakeLists.txt M programs/us_autoflow_analysis/us_autoflow_analysis.cpp M programs/us_autoflow_analysis/us_autoflow_analysis.h M programs/us_buoyancy/us_buoyancy.cpp M programs/us_buoyancy/us_buoyancy.h M programs/us_colorgradient/us_colorgradient.cpp M programs/us_com_project/CMakeLists.txt M programs/us_com_project/us_com_project_gui.h M programs/us_com_project_academic/CMakeLists.txt M programs/us_combine_models/us_combine_models.cpp M programs/us_config/us_color.cpp M programs/us_config/us_font.cpp M programs/us_config/us_font.h M programs/us_config/us_newxpnhost_db.cpp M programs/us_config/us_xpnhost_db.cpp M programs/us_dcdt/us_dcdt.cpp M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_density_match/us_density_match.cpp M programs/us_dmga_init/us_dmga_init.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h M programs/us_edit/us_edit_scan.cpp M programs/us_edit/us_edit_scan.h M programs/us_esigner_gmp/us_esigner_gmp.cpp M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp M programs/us_export_legacy/us_export.cpp M programs/us_fds_filemanager/us_fds_filemanager.cpp M programs/us_fematch/CMakeLists.txt M programs/us_fematch/us_fematch.cpp M programs/us_fematch/us_plot_control_fem.cpp M programs/us_fematch/us_plot_control_fem.h M programs/us_fit_meniscus/CMakeLists.txt M programs/us_fit_meniscus/us_fit_meniscus.cpp M programs/us_fit_meniscus/us_fit_meniscus.h M programs/us_ga_init/us_ga_init.cpp M programs/us_ga_init/us_ga_init.h M programs/us_globalequil/us_eqfit_control.cpp M programs/us_globalequil/us_eqhistogram.cpp M programs/us_globalequil/us_eqmath.cpp M programs/us_globalequil/us_eqmodel_control.cpp M programs/us_globalequil/us_eqreporter.cpp M programs/us_globalequil/us_fit_worker.cpp M programs/us_globalequil/us_globalequil.cpp M programs/us_globalequil/us_globalequil.h M programs/us_grid_editor/us_grid_editor.cpp M programs/us_integral/us_integral.cpp M programs/us_legacy_converter/us_legacy_converter.cpp M programs/us_manage_data/us_data_model.cpp M programs/us_modelmetrics/us_modelmetrics.cpp M programs/us_mwl_species_fit/CMakeLists.txt M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h M programs/us_mwl_species_fit/us_mwl_species_fit.cpp M programs/us_mwl_spectra/us_mwl_spectra.cpp M programs/us_mwl_spectra/us_mwls_pltctl.cpp M programs/us_mwl_spectra/us_mwls_pltctl.h M programs/us_mwlr_viewer/us_mwl_pltctrl.cpp M programs/us_mwlr_viewer/us_mwl_pltctrl.h M programs/us_mwlr_viewer/us_mwlr_viewer.cpp M programs/us_pcsa/us_mlplot.cpp M programs/us_pcsa/us_mrecs_loader.cpp M programs/us_pcsa/us_pcsa.cpp M programs/us_pcsa/us_pcsa.h M programs/us_pcsa/us_rpscan.cpp M programs/us_pcsa/us_rpscan.h M programs/us_protocol_dev/CMakeLists.txt M programs/us_protocol_dev/us_protocol_dev_gui.h M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp M programs/us_pseudo_absorbance/us_add_refScan.cpp M programs/us_pseudo_absorbance/us_convert_scan.cpp M programs/us_pseudo_absorbance/us_convert_scan.h M programs/us_pseudo_absorbance/us_pseudo_absorbance.cpp M programs/us_pseudo_absorbance/us_remove_ri.cpp M programs/us_pseudo_absorbance/us_remove_ri.h M programs/us_query_rmsd/CMakeLists.txt M programs/us_query_rmsd/us_query_rmsd.cpp M programs/us_ramp/us_experiment_ra.cpp M programs/us_ramp/us_get_dbrun_ra.cpp M 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utils/us_run_protocol.cpp M utils/us_run_protocol.h M utils/us_settings.cpp M utils/us_settings.h M utils/us_simparms.cpp M utils/us_simparms.h M utils/us_sleep.h M utils/us_solute.cpp M utils/us_solute.h M utils/us_solution.cpp M utils/us_solution.h M utils/us_solution_vals.h M utils/us_solve_sim.cpp M utils/us_stiffbase.cpp M utils/us_stiffbase.h M utils/us_tar.cpp M utils/us_tar.h M utils/us_time_state.h M utils/us_timer.cpp M utils/us_timer.h M utils/us_util.cpp M utils/us_util.h A utils/us_utils_qt.h M utils/us_vector.cpp M utils/us_vector.h M utils/us_xpn_data.cpp M utils/us_xpn_data.h M utils/us_zsolute.cpp M utils/us_zsolute.h M vcpkg.json Log Message: ----------- Merge remote-tracking branch 'upstream/main' into us_integral Commit: 1adf73f1c4c9bfe5776f65ecae19294163ba1237 https://github.com/ehb54/ultrascan3/commit/1adf73f1c4c9bfe5776f65ecae19294163ba1237 Author: Saeed Date: 2026-01-22 (Thu, 22 Jan 2026) Changed paths: M programs/us_integral/us_integral.cpp M programs/us_integral/us_integral.h Log Message: ----------- add hr vectors Commit: 2542899201e17dd085de687f6fdfe671fa123bdb https://github.com/ehb54/ultrascan3/commit/2542899201e17dd085de687f6fdfe671fa123bdb Author: Haben Gabir Date: 2026-01-22 (Thu, 22 Jan 2026) Changed paths: A doc/manual/source/#Makefile# A doc/manual/source/2dsa/2dsa_adv.rst A doc/manual/source/2dsa/2dsa_analys.rst A doc/manual/source/2dsa/2dsa_main.rst A doc/manual/source/2dsa/index.rst A doc/manual/source/3d_plot.rst A doc/manual/source/_static/css/custom.css A doc/manual/source/_static/custom.css A doc/manual/source/_static/images/2dsa_3dplot.png A doc/manual/source/_static/images/2dsa_advan.png A doc/manual/source/_static/images/2dsa_analvv.png A doc/manual/source/_static/images/2dsa_analys.png A doc/manual/source/_static/images/2dsa_main-c.png A doc/manual/source/_static/images/2dsa_main-o.png A doc/manual/source/_static/images/2dsa_resplot.png A doc/manual/source/_static/images/D20W_bar.png A 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doc/manual/source/register.rst A doc/manual/source/reporter.rst A doc/manual/source/requirements.txt A doc/manual/source/rmsd_query.rst A doc/manual/source/rotor.rst A doc/manual/source/rotor_calibration.rst A doc/manual/source/run_details.rst A doc/manual/source/sassoc.rst A doc/manual/source/second_moment.rst A doc/manual/source/simparams.rst A doc/manual/source/solutions/index.rst A doc/manual/source/solutions/solution_edit.rst A doc/manual/source/solutions/solution_new.rst A doc/manual/source/solutions/solution_select.rst A doc/manual/source/solutions/solution_settings.rst A doc/manual/source/start_page.rst A doc/manual/source/temp.txt A doc/manual/source/time_derivative.rst A doc/manual/source/tmp.rst A doc/manual/source/tmst_viewer.rst A doc/manual/source/us_buoyancy.rst A doc/manual/source/us_edit.rst A doc/manual/source/us_equiltime.rst A doc/manual/source/us_extinction.rst A doc/manual/source/us_fds_filemanager.rst A doc/manual/source/us_investigator.rst A doc/manual/source/us_modelmetrics.rst A doc/manual/source/us_project.rst A doc/manual/source/us_spectrum.rst A doc/manual/source/vhw_combine.rst A doc/manual/source/vhw_distrib_plot.rst A doc/manual/source/vhw_enhanced.rst A doc/manual/source/xpn_viewer.rst Log Message: ----------- ACAB doubled Commit: 99f518f577e8ff84c28cc02f3e3bd6cdb3fcacd1 https://github.com/ehb54/ultrascan3/commit/99f518f577e8ff84c28cc02f3e3bd6cdb3fcacd1 Author: aaron-auc Date: 2026-01-22 (Thu, 22 Jan 2026) Changed paths: A .github/workflows/bump-version.yml Log Message: ----------- add: bump version workflow Commit: 0f3650c4ac72c937a21c2c1b00a9fcf2bbcd9c8d https://github.com/ehb54/ultrascan3/commit/0f3650c4ac72c937a21c2c1b00a9fcf2bbcd9c8d Author: Saeed Date: 2026-01-23 (Fri, 23 Jan 2026) Changed paths: M programs/us_integral/us_integral.cpp M programs/us_integral/us_integral.h Log Message: ----------- calculate rh from D Commit: e0bb671ae974157fb37d82c7884427498e944172 https://github.com/ehb54/ultrascan3/commit/e0bb671ae974157fb37d82c7884427498e944172 Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-01-23 (Fri, 23 Jan 2026) Changed paths: A .github/workflows/bump-version.yml Log Message: ----------- Merge pull request #348 from ehb54/691-request-update-workflow-to-add-version-file-and-update-version-in-us_defines Add bump version workflow Commit: a71ddd5aa108ec9bc41b90b64fc57f365032083f https://github.com/ehb54/ultrascan3/commit/a71ddd5aa108ec9bc41b90b64fc57f365032083f Author: Saeed Date: 2026-01-26 (Mon, 26 Jan 2026) Changed paths: M programs/us_integral/us_integral.cpp M programs/us_integral/us_integral.h Log Message: ----------- replace S_Solute with SolParam Commit: efe498c83cd9b87e53393725e527abdfe2e4036f https://github.com/ehb54/ultrascan3/commit/efe498c83cd9b87e53393725e527abdfe2e4036f Author: Saeed Date: 2026-01-26 (Mon, 26 Jan 2026) Changed paths: M programs/us_integral/us_integral.cpp Log Message: ----------- recalc r_h Commit: 8ba90ba55aa38fa0756457d800cf859cfbbb5c78 https://github.com/ehb54/ultrascan3/commit/8ba90ba55aa38fa0756457d800cf859cfbbb5c78 Author: Saeed Date: 2026-01-26 (Mon, 26 Jan 2026) Changed paths: M programs/us_integral/us_integral.cpp Log Message: ----------- calculate rh from f in meter Commit: 1775a16ed46b3e795b72a8c39e85c37e084c347e https://github.com/ehb54/ultrascan3/commit/1775a16ed46b3e795b72a8c39e85c37e084c347e Author: Saeed Date: 2026-01-26 (Mon, 26 Jan 2026) Changed paths: M programs/us_integral/us_integral.cpp Log Message: ----------- edit x axis labels Commit: 2f0b65d3035c4164a71480a60c692161bf64ab2c https://github.com/ehb54/ultrascan3/commit/2f0b65d3035c4164a71480a60c692161bf64ab2c Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-01-26 (Mon, 26 Jan 2026) Changed paths: A .github/workflows/bump-version.yml Log Message: ----------- Merge branch 'main' into us_integral Commit: e08ce06ec32dbd266cd302dda037f3f30e0f364c https://github.com/ehb54/ultrascan3/commit/e08ce06ec32dbd266cd302dda037f3f30e0f364c Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-01-26 (Mon, 26 Jan 2026) Changed paths: M programs/us_integral/us_integral.cpp M programs/us_integral/us_integral.h Log Message: ----------- Merge pull request #347 from samo38/us_integral us_integral: added vbar distribution Commit: 0ca5c3f6f16b6c2e357c2eca631eee2e5d894a4f https://github.com/ehb54/ultrascan3/commit/0ca5c3f6f16b6c2e357c2eca631eee2e5d894a4f Author: alexsav815 Date: 2026-01-28 (Wed, 28 Jan 2026) Changed paths: M programs/us_experiment/us_proto_ranges.cpp Log Message: ----------- GMP and R&D | 1. EXP:Ranges -- fix error in the Manula Wavelength Slector syntax... Commit: 96ee714e450f03998ba02aaaf514f1a350da0197 https://github.com/ehb54/ultrascan3/commit/96ee714e450f03998ba02aaaf514f1a350da0197 Author: alexsav815 Date: 2026-02-02 (Mon, 02 Feb 2026) Changed paths: M gui/us_report_gui.cpp M gui/us_report_gui.h Log Message: ----------- GMP | 8. AProfile: Report | ReportItems -- work on adding an option to upload from .gadistro & .sol_integ.stats files... Commit: ec1ef5551bdd7381fd14863e3ad0cddd7474237b https://github.com/ehb54/ultrascan3/commit/ec1ef5551bdd7381fd14863e3ad0cddd7474237b Author: alexsav815 Date: 2026-02-02 (Mon, 02 Feb 2026) Changed paths: M gui/us_report_gui.cpp Log Message: ----------- [ further wirk, bugs fixed]GMP | 8. AProfile: Report | ReportItems -- work on adding an option to upload from .gadistro & .sol_integ.stats files... Commit: 1bed32fbf1b5865f9d4241da389cd51fc7502286 https://github.com/ehb54/ultrascan3/commit/1bed32fbf1b5865f9d4241da389cd51fc7502286 Author: alexsav815 Date: 2026-02-02 (Mon, 02 Feb 2026) Changed paths: M gui/us_report_gui.cpp Log Message: ----------- [ further work, multiple files checks]GMP | 8. AProfile: Report | ReportItems -- work on adding an option to upload from .gadistro & .sol_integ.stats files... Commit: 84ab1b719ee2bb0d31cf0c1b50bb2d0c702c3b06 https://github.com/ehb54/ultrascan3/commit/84ab1b719ee2bb0d31cf0c1b50bb2d0c702c3b06 Author: alexsav815 Date: 2026-02-02 (Mon, 02 Feb 2026) Changed paths: M programs/us_integral/us_integral.cpp M programs/us_integral/us_integral.h Log Message: ----------- Merge pull request #352 from ehb54/main Add main to alexey-dev-issue693 Commit: 2c019fc6878b57e1c32eaffbe63a5e91f774116d https://github.com/ehb54/ultrascan3/commit/2c019fc6878b57e1c32eaffbe63a5e91f774116d Author: alexsav815 Date: 2026-02-02 (Mon, 02 Feb 2026) Changed paths: M gui/us_report_gui.cpp Log Message: ----------- [ 11a further work, multiple files checks]GMP | 8. AProfile: Report | ReportItems -- work on adding an option to upload from .gadistro & .sol_integ.stats files... Commit: d1e2cfa1ac60af4aadf7b43609bce67db0172b7e https://github.com/ehb54/ultrascan3/commit/d1e2cfa1ac60af4aadf7b43609bce67db0172b7e Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-02-03 (Tue, 03 Feb 2026) Changed paths: M gui/us_report_gui.cpp M gui/us_report_gui.h Log Message: ----------- Merge pull request #353 from ehb54/alexey-dev-issue693 Alexey dev issue693: GMP : AProfile: Reports -- read from gadistro & stats files... Commit: 754919623caf6fd45a51f5727822cfac0020d4e7 https://github.com/ehb54/ultrascan3/commit/754919623caf6fd45a51f5727822cfac0020d4e7 Author: Saeed Mortezazadeh Date: 2026-02-03 (Tue, 03 Feb 2026) Changed paths: M gui/us_csv_loader.cpp M utils/us_csv_data.cpp Log Message: ----------- csv loader: remove strict rules from ASCII checking Commit: ce46d86dbadf1a938281bae38ce621b26a5de8a3 https://github.com/ehb54/ultrascan3/commit/ce46d86dbadf1a938281bae38ce621b26a5de8a3 Author: Saeed Mortezazadeh <49119048+samo38 at users.noreply.github.com> Date: 2026-02-05 (Thu, 05 Feb 2026) Changed paths: M gui/us_csv_loader.cpp M utils/us_csv_data.cpp Log Message: ----------- Merge pull request #354 from samo38/issue_721 csv loader: remove strict rules to check ASCII Commit: d287d24ac45d15c14c50dffde79d3abcf44e1c47 https://github.com/ehb54/ultrascan3/commit/d287d24ac45d15c14c50dffde79d3abcf44e1c47 Author: Saeed Date: 2026-02-06 (Fri, 06 Feb 2026) Changed paths: M gui/us_spectrodata.h Log Message: ----------- us_spectrodata: add hydrodynamic radius to S_Solute Commit: 1a9eda0deabbf567b25ddd721c01232463c6d549 https://github.com/ehb54/ultrascan3/commit/1a9eda0deabbf567b25ddd721c01232463c6d549 Author: Saeed Date: 2026-02-06 (Fri, 06 Feb 2026) Changed paths: M programs/us_integral/us_integral.cpp M programs/us_integral/us_integral.h Log Message: ----------- us_integral: replace SolParam with S_Solute Commit: da3fc554ce97a1be8cfe7b62337d78d92604161f https://github.com/ehb54/ultrascan3/commit/da3fc554ce97a1be8cfe7b62337d78d92604161f Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-08 (Sun, 08 Feb 2026) Changed paths: A test/utils/test_us_regex.cpp Log Message: ----------- Add unit tests for regex pattern validation across multiple directories using Google Test. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: cb515698419c2bb2848d269cceca3d7868746844 https://github.com/ehb54/ultrascan3/commit/cb515698419c2bb2848d269cceca3d7868746844 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-08 (Sun, 08 Feb 2026) Changed paths: M programs/us_astfem_sim/us_astfem_sim.cpp Log Message: ----------- Remove unused QRegularExpression instance in `us_astfem_sim.cpp` for cleanup. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: b0ac1a3cb666e4f4b25c1365edc8d5c5e4f6bacf https://github.com/ehb54/ultrascan3/commit/b0ac1a3cb666e4f4b25c1365edc8d5c5e4f6bacf Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-08 (Sun, 08 Feb 2026) Changed paths: M programs/us_experiment/us_proto_ranges.cpp Log Message: ----------- Fix regex pattern Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 6576b55edf442a9f5bbf1a514fdf3c8b7d0aacb4 https://github.com/ehb54/ultrascan3/commit/6576b55edf442a9f5bbf1a514fdf3c8b7d0aacb4 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-08 (Sun, 08 Feb 2026) Changed paths: M programs/us_experiment/us_experiment_gui_optima.cpp Log Message: ----------- Fix regex pattern to escape hyphen in `us_experiment_gui_optima.cpp`. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 6e7d30e0ef299014a0c9cb9ef1946d1a47fb0a7c https://github.com/ehb54/ultrascan3/commit/6e7d30e0ef299014a0c9cb9ef1946d1a47fb0a7c Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-08 (Sun, 08 Feb 2026) Changed paths: M test/utils/test_us_regex.cpp Log Message: ----------- Enhance regex validation test to handle multiple root directories. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 08cb8eff95cbb8854677c23f9a6feaf2cb8a3cf0 https://github.com/ehb54/ultrascan3/commit/08cb8eff95cbb8854677c23f9a6feaf2cb8a3cf0 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-08 (Sun, 08 Feb 2026) Changed paths: M gui/us_model_loader.cpp Log Message: ----------- Refactor `mflt1` handling in `us_model_loader.cpp` to improve readability and maintainability with explicit regex variable. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 5078a8d03fd2b3aa46a05080799be0a7160b8ebf https://github.com/ehb54/ultrascan3/commit/5078a8d03fd2b3aa46a05080799be0a7160b8ebf Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-08 (Sun, 08 Feb 2026) Changed paths: M CMakeLists.txt M test/utils/test_us_regex.cpp Log Message: ----------- Improve regex patterns in `test_us_regex.cpp` by refining matching groups and simplify logic using `US3_SOURCE_DIR`. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 209a54e72c0504fe6f76815b7942f5a22fd234f0 https://github.com/ehb54/ultrascan3/commit/209a54e72c0504fe6f76815b7942f5a22fd234f0 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-08 (Sun, 08 Feb 2026) Changed paths: M test/utils/test_us_regex.cpp Log Message: ----------- Remove unused `#include ` from `test_us_regex.cpp`. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 9242af2cd2230eee60f31dfeb847dc9f5e8d5f7f https://github.com/ehb54/ultrascan3/commit/9242af2cd2230eee60f31dfeb847dc9f5e8d5f7f Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-08 (Sun, 08 Feb 2026) Changed paths: M programs/us_experiment/us_proto_ranges.cpp Log Message: ----------- Improve regex pattern in `us_proto_ranges.cpp` by adding anchors to validate the entire input string. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 265038699620b8b1a90c53f84efb775c87a8d9f8 https://github.com/ehb54/ultrascan3/commit/265038699620b8b1a90c53f84efb775c87a8d9f8 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-02-08 (Sun, 08 Feb 2026) Changed paths: M gui/us_csv_loader.cpp M utils/us_csv_data.cpp Log Message: ----------- Merge branch 'main' into lukas/qregularexpression Commit: 2ea487199988c676fcc1964a6f46d839a5923f6e https://github.com/ehb54/ultrascan3/commit/2ea487199988c676fcc1964a6f46d839a5923f6e Author: alexsav815 Date: 2026-02-09 (Mon, 09 Feb 2026) Changed paths: M programs/us_reporter_gmp/us_reporter_gmp.cpp Log Message: ----------- GMP | 6. Report | GMP Reporter -- do not treat models for triples unselected via MWL settings in AProfile... Commit: 61e17120bfea3d3fe14220a8a0813e06f91b405e https://github.com/ehb54/ultrascan3/commit/61e17120bfea3d3fe14220a8a0813e06f91b405e Author: alexsav815 Date: 2026-02-09 (Mon, 09 Feb 2026) Changed paths: M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h Log Message: ----------- GMP | 6. Report | GMP Reporter -- [test for exclusion from replicas averages ] do not treat models for triples unselected via MWL settings in AProfile... Commit: bc93bdb1ac483145af191042bca04ce2dae6160c https://github.com/ehb54/ultrascan3/commit/bc93bdb1ac483145af191042bca04ce2dae6160c Author: alexsav815 Date: 2026-02-09 (Mon, 09 Feb 2026) Changed paths: M programs/us_reporter_gmp/us_reporter_gmp.cpp Log Message: ----------- GMP | 6. Report | GMP Reporter -- [test for exclusion from replicas averages ] do not treat models for triples unselected via MWL settings in AProfile... Commit: f422eaebafa361f357d0b27d3f56d3f4d3247f8e https://github.com/ehb54/ultrascan3/commit/f422eaebafa361f357d0b27d3f56d3f4d3247f8e Author: Saeed Date: 2026-02-10 (Tue, 10 Feb 2026) Changed paths: M programs/us_ga_init/us_ga_init.cpp M programs/us_ga_init/us_ga_init.h Log Message: ----------- us_ga_init: add Rh Commit: 64aaf14c987aa4ffd38f3384794e8d48c9db4550 https://github.com/ehb54/ultrascan3/commit/64aaf14c987aa4ffd38f3384794e8d48c9db4550 Author: alexsav815 Date: 2026-02-10 (Tue, 10 Feb 2026) Changed paths: M programs/us_analysis_profile/us_analysis_profile.cpp Log Message: ----------- GMP | 6. Report | GMP Reporter -- debugs... Commit: 0948900b5205298e629f088eb4065f427533405a https://github.com/ehb54/ultrascan3/commit/0948900b5205298e629f088eb4065f427533405a Author: alexsav815 Date: 2026-02-10 (Tue, 10 Feb 2026) Changed paths: M programs/us_analysis_profile/us_analysis_profile.cpp Log Message: ----------- [1]GMP | 6. Report | GMP Reporter -- debugs... Commit: dea86432abbfcb78b4a27b2d6ff3e2598049a457 https://github.com/ehb54/ultrascan3/commit/dea86432abbfcb78b4a27b2d6ff3e2598049a457 Author: alexsav815 Date: 2026-02-10 (Tue, 10 Feb 2026) Changed paths: M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_analysis_profile/us_anapro_utils.cpp Log Message: ----------- [3]GMP | 6. Report | GMP Reporter -- debugs... Commit: 460d442cc51bf15666694018e83b32f67ad3b7d3 https://github.com/ehb54/ultrascan3/commit/460d442cc51bf15666694018e83b32f67ad3b7d3 Author: alexsav815 Date: 2026-02-10 (Tue, 10 Feb 2026) Changed paths: M programs/us_analysis_profile/us_anapro_utils.cpp Log Message: ----------- [44]GMP | 6. Report | GMP Reporter -- debugs... Commit: dd8f0db7bde551fdadeb9537b163c89d4a92c354 https://github.com/ehb54/ultrascan3/commit/dd8f0db7bde551fdadeb9537b163c89d4a92c354 Author: alexsav815 Date: 2026-02-10 (Tue, 10 Feb 2026) Changed paths: M programs/us_analysis_profile/us_anapro_utils.cpp Log Message: ----------- [55]GMP | 6. Report | GMP Reporter -- debugs... Commit: 7b19d82c50ea2091a5f5505be3dcc5dc6c68c1f2 https://github.com/ehb54/ultrascan3/commit/7b19d82c50ea2091a5f5505be3dcc5dc6c68c1f2 Author: alexsav815 Date: 2026-02-10 (Tue, 10 Feb 2026) Changed paths: M gui/us_csv_loader.cpp M gui/us_report_gui.cpp M gui/us_report_gui.h M utils/us_csv_data.cpp Log Message: ----------- Merge branch 'main' into alexey-dev-issue696 Commit: 03cfa5a45de626720e1950e9f8175c43f8f4eeda https://github.com/ehb54/ultrascan3/commit/03cfa5a45de626720e1950e9f8175c43f8f4eeda Author: alexsav815 Date: 2026-02-10 (Tue, 10 Feb 2026) Changed paths: M programs/us_experiment/us_experiment_gui_optima.cpp Log Message: ----------- GMP | 1. EXP.: dataDisk -- preclude uploading data with mismatching wvls in A/B channels of each cell .. Commit: 4aea2b2f6186986e0fd3ad290cfeaa1377b10159 https://github.com/ehb54/ultrascan3/commit/4aea2b2f6186986e0fd3ad290cfeaa1377b10159 Author: alexsav815 Date: 2026-02-10 (Tue, 10 Feb 2026) Changed paths: M programs/us_experiment/us_proto_ranges.cpp Log Message: ----------- Merge pull request #351 from ehb54/alexey-dev-issue696 GMP and R&D | 1. EXP:Ranges -- fix error in the Manula Wavelength Selector syntax Commit: 3f5f87a55d56cc92cf12660f817aac9818f146c2 https://github.com/ehb54/ultrascan3/commit/3f5f87a55d56cc92cf12660f817aac9818f146c2 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-02-11 (Wed, 11 Feb 2026) Changed paths: M programs/us_experiment/us_proto_ranges.cpp Log Message: ----------- Merge branch 'main' into lukas/qregularexpression Commit: c15785325aacd959a7751c0d680b21526c3d13c2 https://github.com/ehb54/ultrascan3/commit/c15785325aacd959a7751c0d680b21526c3d13c2 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-02-11 (Wed, 11 Feb 2026) Changed paths: M programs/us_experiment/us_proto_ranges.cpp Log Message: ----------- Remove unused QRegularExpression definition Removed commented-out QRegularExpression for range matching. Commit: 7dd74a941f99399277845ebc113b332cb11a6c83 https://github.com/ehb54/ultrascan3/commit/7dd74a941f99399277845ebc113b332cb11a6c83 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-02-11 (Wed, 11 Feb 2026) Changed paths: M programs/us_fit_meniscus/CMakeLists.txt Log Message: ----------- Refactor CMakeLists.txt for us_fit_meniscus Updated the CMake configuration to simplify the build process by removing conditional library builds and directly linking the executable to the common library. Commit: c0861a3c61ea3133bd02b3dd1974217fa41b6ccb https://github.com/ehb54/ultrascan3/commit/c0861a3c61ea3133bd02b3dd1974217fa41b6ccb Author: alexsav815 Date: 2026-02-11 (Wed, 11 Feb 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h Log Message: ----------- GMP | 1. EXP.: dataDisk -- set all tabs but few to readonly upon dataDisk upload; unset when dataDisk uncheched .. Commit: 51825487cf5107edca76f02968f26dd1d142173d https://github.com/ehb54/ultrascan3/commit/51825487cf5107edca76f02968f26dd1d142173d Author: alexsav815 Date: 2026-02-11 (Wed, 11 Feb 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp Log Message: ----------- [1]GMP | 1. EXP.: dataDisk -- set all tabs but few to readonly upon dataDisk upload; unset when dataDisk uncheched .. Commit: b4b6df18011d41ed7209dca2fa4580a93512d976 https://github.com/ehb54/ultrascan3/commit/b4b6df18011d41ed7209dca2fa4580a93512d976 Author: Saeed Date: 2026-02-11 (Wed, 11 Feb 2026) Changed paths: M programs/us_ga_init/us_solutedata.cpp Log Message: ----------- us_ga_init/us_solutedata: add Hr to the report file Commit: a10c820b1808470ff1529c74ae9e8cbb6f2db80f https://github.com/ehb54/ultrascan3/commit/a10c820b1808470ff1529c74ae9e8cbb6f2db80f Author: Saeed Date: 2026-02-11 (Wed, 11 Feb 2026) Changed paths: M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_ddist_combine/us_ddist_combine.h Log Message: ----------- us_ddist_combine: add Rh to the discrete distributions program Commit: 3e454dd1eca619263c23dc1206fe22fb60c737c4 https://github.com/ehb54/ultrascan3/commit/3e454dd1eca619263c23dc1206fe22fb60c737c4 Author: Saeed Date: 2026-02-11 (Wed, 11 Feb 2026) Changed paths: M programs/us_experiment/us_proto_ranges.cpp Log Message: ----------- Merge remote-tracking branch 'upstream/main' into ticket_699 Commit: 9e51cdcfa43a81f4121dea2aa9d99d5f9cfe7d05 https://github.com/ehb54/ultrascan3/commit/9e51cdcfa43a81f4121dea2aa9d99d5f9cfe7d05 Author: alexsav815 Date: 2026-02-12 (Thu, 12 Feb 2026) Changed paths: M programs/us_analysis_profile/us_analysis_profile.cpp Log Message: ----------- GMP | 1. EXP.: 8.AProfile:2DSA -- remove check for metadata in customgrid models in GMP... Commit: 482dbb495512e7628e78756240055909d096c476 https://github.com/ehb54/ultrascan3/commit/482dbb495512e7628e78756240055909d096c476 Author: Saeed Date: 2026-02-12 (Thu, 12 Feb 2026) Changed paths: M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_ga_init/us_ga_init.cpp M programs/us_integral/us_integral.cpp M programs/us_modelmetrics/us_modelmetrics.cpp Log Message: ----------- us nm unit for hydrodynamic radius Commit: 679d24e59f88ba1d091f5f2d7025cebce66847a2 https://github.com/ehb54/ultrascan3/commit/679d24e59f88ba1d091f5f2d7025cebce66847a2 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-13 (Fri, 13 Feb 2026) Changed paths: M gui/us_plot.cpp Log Message: ----------- Adjust button sizes in `us_plot.cpp` to improve UI consistency. Add missing size configurations for `btnCMap`. Commit: 9c4bc4cfdbca84956e3698eae833736bd38049ec https://github.com/ehb54/ultrascan3/commit/9c4bc4cfdbca84956e3698eae833736bd38049ec Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-13 (Fri, 13 Feb 2026) Changed paths: M gui/us_analysis_base2.cpp M gui/us_analysis_base2.h Log Message: ----------- Refactor `US_AnalysisBase2` to improve readability and maintainability: - Replace raw arrays with `QVector` for `x_weights` and `y_weights`. - Use `QSignalBlocker` to simplify signal connection management. - Switch from old-style signal/slot syntax to the new syntax. - Add `reset_data` and `reset_gui` methods to centralize reset logic. - Update function parameters to use `const` where applicable. - Improve code consistency with `nullptr` and `static_cast`. Commit: 53e206359e71440d79578430acdebaef4dcaedf0 https://github.com/ehb54/ultrascan3/commit/53e206359e71440d79578430acdebaef4dcaedf0 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-13 (Fri, 13 Feb 2026) Changed paths: M programs/us_2dsa/us_2dsa.cpp M programs/us_2dsa/us_2dsa.h Log Message: ----------- Add `reset`, `reset_data`, and `reset_gui` methods to `US_2dsa`. Refactor signal/slot connections to new-style syntax for improved clarity and maintainability. Commit: 7947fe35531e4787b56f263dd0789b40f196dc98 https://github.com/ehb54/ultrascan3/commit/7947fe35531e4787b56f263dd0789b40f196dc98 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-13 (Fri, 13 Feb 2026) Changed paths: M programs/us_dcdt/us_dcdt.cpp M programs/us_dcdt/us_dcdt.h Log Message: ----------- Refactor `US_Dcdt` for signal/slot modernization and reset logic centralization: - Refactor signal/slot connections to use the new-style syntax. - Add `reset_data` and `reset_gui` methods for better modularity. - Replace repetitive signal blocking with `QSignalBlocker`. Commit: aa8931a16cb3c1b35e26f7ae7c12d77303de7449 https://github.com/ehb54/ultrascan3/commit/aa8931a16cb3c1b35e26f7ae7c12d77303de7449 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-13 (Fri, 13 Feb 2026) Changed paths: M programs/us_mwl_species_fit/us_mwl_species_fit.cpp M programs/us_mwl_species_fit/us_mwl_species_fit.h Log Message: ----------- Add `reset`, `reset_data`, and `reset_gui` methods to `US_MwlSpeciesFit` for centralized reset logic. Commit: c220871ce8f2a92cd7d0599e8f3f1c8d9d5ca440 https://github.com/ehb54/ultrascan3/commit/c220871ce8f2a92cd7d0599e8f3f1c8d9d5ca440 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-13 (Fri, 13 Feb 2026) Changed paths: M programs/us_second_moment/us_second_moment.cpp M programs/us_second_moment/us_second_moment.h Log Message: ----------- Add `reset`, `reset_data`, and `reset_gui` methods to `US_SecondMoment` for centralized reset logic. Commit: 66ad967703fe072619f70bd88332a44b08f6deb7 https://github.com/ehb54/ultrascan3/commit/66ad967703fe072619f70bd88332a44b08f6deb7 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-13 (Fri, 13 Feb 2026) Changed paths: M programs/us_vhw_enhanced/us_vhw_enhanced.cpp M programs/us_vhw_enhanced/us_vhw_enhanced.h Log Message: ----------- Add `reset`, `reset_data`, and `reset_gui` methods to `US_vHW_Enhanced` for centralized reset logic. Refactor signal/slot connections to new-style syntax for improved readability. Commit: 07467629be5a04d4391038f9c0928e1801bea687 https://github.com/ehb54/ultrascan3/commit/07467629be5a04d4391038f9c0928e1801bea687 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-02-14 (Sat, 14 Feb 2026) Changed paths: M CMakeLists.txt M gui/us_model_loader.cpp M programs/us_astfem_sim/us_astfem_sim.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_proto_ranges.cpp A test/utils/test_us_regex.cpp Log Message: ----------- Merge pull request #355 from ehb54/lukas/qregularexpression Add test case for QRegularExpression Commit: a4ef846e1efc8c0c36fd8ba95a8624abe699b90d https://github.com/ehb54/ultrascan3/commit/a4ef846e1efc8c0c36fd8ba95a8624abe699b90d Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-02-14 (Sat, 14 Feb 2026) Changed paths: M CMakeLists.txt M gui/us_model_loader.cpp M programs/us_astfem_sim/us_astfem_sim.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_proto_ranges.cpp A test/utils/test_us_regex.cpp Log Message: ----------- Merge branch 'main' into lukas/us_fit_meniscus Commit: 276cc3fe3d26224cab52f0f3f4300685881cb7b0 https://github.com/ehb54/ultrascan3/commit/276cc3fe3d26224cab52f0f3f4300685881cb7b0 Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-02-14 (Sat, 14 Feb 2026) Changed paths: M CMakeLists.txt M gui/us_model_loader.cpp M programs/us_astfem_sim/us_astfem_sim.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_proto_ranges.cpp A test/utils/test_us_regex.cpp Log Message: ----------- Merge branch 'main' into alexey-dev-issue727 Commit: 2fd6c045e09af67fd040a1060e4511630131160d https://github.com/ehb54/ultrascan3/commit/2fd6c045e09af67fd040a1060e4511630131160d Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-02-14 (Sat, 14 Feb 2026) Changed paths: M programs/us_fit_meniscus/CMakeLists.txt Log Message: ----------- Merge pull request #360 from ehb54/lukas/us_fit_meniscus Refactor CMakeLists.txt for us_fit_meniscus Commit: 8c56b13faf08fbb28cae8ccf6065281505773c75 https://github.com/ehb54/ultrascan3/commit/8c56b13faf08fbb28cae8ccf6065281505773c75 Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-02-14 (Sat, 14 Feb 2026) Changed paths: M CMakeLists.txt M gui/us_model_loader.cpp M programs/us_astfem_sim/us_astfem_sim.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_proto_ranges.cpp M programs/us_fit_meniscus/CMakeLists.txt A test/utils/test_us_regex.cpp Log Message: ----------- Merge branch 'main' into alexey-dev-issue722 Commit: b88e3e9b8bf9b260bb39b1506d42a8109999484f https://github.com/ehb54/ultrascan3/commit/b88e3e9b8bf9b260bb39b1506d42a8109999484f Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-02-14 (Sat, 14 Feb 2026) Changed paths: M CMakeLists.txt M gui/us_model_loader.cpp M programs/us_astfem_sim/us_astfem_sim.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_proto_ranges.cpp M programs/us_fit_meniscus/CMakeLists.txt A test/utils/test_us_regex.cpp Log Message: ----------- Merge branch 'main' into alexey-dev-issue726 Commit: d33d111549b1ef2ab5c3c1fb0221d0d4051f5c45 https://github.com/ehb54/ultrascan3/commit/d33d111549b1ef2ab5c3c1fb0221d0d4051f5c45 Author: alexsav815 Date: 2026-02-14 (Sat, 14 Feb 2026) Changed paths: M programs/us_experiment/us_experiment_gui_optima.cpp Log Message: ----------- Merge pull request #359 from ehb54/alexey-dev-issue722 GMP | 1. EXP.: dataDisk -- preclude uploading data with mismatching wavelengths in A/B channels Commit: 0bd3d78bdfcabdbfcf26427148b6c46ba5e35ab0 https://github.com/ehb54/ultrascan3/commit/0bd3d78bdfcabdbfcf26427148b6c46ba5e35ab0 Author: alexsav815 Date: 2026-02-14 (Sat, 14 Feb 2026) Changed paths: M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_fit_meniscus/CMakeLists.txt Log Message: ----------- Merge branch 'main' into alexey-dev-issue727 Commit: 74decf93e5b0bcb0d14c8b1c478c7ea142927592 https://github.com/ehb54/ultrascan3/commit/74decf93e5b0bcb0d14c8b1c478c7ea142927592 Author: alexsav815 Date: 2026-02-14 (Sat, 14 Feb 2026) Changed paths: M programs/us_experiment/us_experiment_gui_optima.cpp Log Message: ----------- Merge branch 'main' into alexey-dev-issue726 Commit: e2958af17ebf6efb9e81b1f388d776e1ca4e57c9 https://github.com/ehb54/ultrascan3/commit/e2958af17ebf6efb9e81b1f388d776e1ca4e57c9 Author: alexsav815 Date: 2026-02-14 (Sat, 14 Feb 2026) Changed paths: M programs/us_analysis_profile/us_analysis_profile.cpp Log Message: ----------- Merge pull request #363 from ehb54/alexey-dev-issue726 GMP | 1. EXP.: 8.AProfile:2DSA -- remove check for metadata in customGrid models uploaded Commit: 146c6530464ca618ee4f58a94b04927bbc7bd34a https://github.com/ehb54/ultrascan3/commit/146c6530464ca618ee4f58a94b04927bbc7bd34a Author: alexsav815 Date: 2026-02-14 (Sat, 14 Feb 2026) Changed paths: M programs/us_analysis_profile/us_analysis_profile.cpp Log Message: ----------- Merge branch 'main' into alexey-dev-issue727 Commit: 0b9cfd848d0d53888d6c22853966518f5b088fe7 https://github.com/ehb54/ultrascan3/commit/0b9cfd848d0d53888d6c22853966518f5b088fe7 Author: alexsav815 Date: 2026-02-14 (Sat, 14 Feb 2026) Changed paths: M CMakeLists.txt M gui/us_model_loader.cpp M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_astfem_sim/us_astfem_sim.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_proto_ranges.cpp M programs/us_fit_meniscus/CMakeLists.txt A test/utils/test_us_regex.cpp Log Message: ----------- Merge pull request #357 from ehb54/main main to here Commit: d874c292e59932a8d126026910cca00d4279ae90 https://github.com/ehb54/ultrascan3/commit/d874c292e59932a8d126026910cca00d4279ae90 Author: alexsav815 Date: 2026-02-14 (Sat, 14 Feb 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp Log Message: ----------- Merge pull request #361 from ehb54/alexey-dev-issue727 Alexey dev issue727: ReadOnly tabs when dataDisk in GMP Commit: b005ec4151340cdf16ce95a47c930d0807c6fc40 https://github.com/ehb54/ultrascan3/commit/b005ec4151340cdf16ce95a47c930d0807c6fc40 Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-02-14 (Sat, 14 Feb 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp Log Message: ----------- Merge branch 'main' into alexey-dev-issue724 Commit: 49e66ee799500b45cb201876615b40b4ea9e3bd9 https://github.com/ehb54/ultrascan3/commit/49e66ee799500b45cb201876615b40b4ea9e3bd9 Author: alexsav815 Date: 2026-02-15 (Sun, 15 Feb 2026) Changed paths: M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_analysis_profile/us_anapro_utils.cpp M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h Log Message: ----------- Merge pull request #356 from ehb54/alexey-dev-issue724 GMP | 6. Report | GMP Reporter -- do not treat models for triples unselected in MWL settings as missed Commit: c9c647fe4dee50482fd482171b83783d3fae427c https://github.com/ehb54/ultrascan3/commit/c9c647fe4dee50482fd482171b83783d3fae427c Author: alexsav815 Date: 2026-02-15 (Sun, 15 Feb 2026) Changed paths: M programs/us_autoflow_analysis/us_autoflow_analysis.cpp M programs/us_fit_meniscus/us_fit_meniscus.cpp Log Message: ----------- GMP | 5. ANALSYSI | 6. REPORT -- for fit_meniscus_And_bottom option, make sure to capture mode of meniscus update in 5. ANALAYSIS|FITMEN stage - best fit, or manual update, pass to User Interations section of the Rpeort as well as to audit trail... Commit: 0500c3350c3437732e0d9ed656185a5e32ca2584 https://github.com/ehb54/ultrascan3/commit/0500c3350c3437732e0d9ed656185a5e32ca2584 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-16 (Mon, 16 Feb 2026) Changed paths: M gui/us_analysis_base2.h Log Message: ----------- Make `reset_data` and `reset_gui` non-virtual in `US_AnalysisBase2` to simplify inheritance structure. Commit: 074e12d4c448250dccba1b236d2f887b14cd26f0 https://github.com/ehb54/ultrascan3/commit/074e12d4c448250dccba1b236d2f887b14cd26f0 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-16 (Mon, 16 Feb 2026) Changed paths: M programs/us_2dsa/us_2dsa.cpp Log Message: ----------- Simplify `reset_gui` in `US_2dsa` by removing redundant `nullptr` assignments. Commit: 643926ae3cc32d094e7feda27fe58bc9099818ef https://github.com/ehb54/ultrascan3/commit/643926ae3cc32d094e7feda27fe58bc9099818ef Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-16 (Mon, 16 Feb 2026) Changed paths: M programs/us_pcsa/us_pcsa.cpp Log Message: ----------- Refactor `US_pcsa` signal/slot connections to use new-style syntax for improved readability and maintainability. Commit: 0667d84eda957989a0d1072815ced463ad60dd21 https://github.com/ehb54/ultrascan3/commit/0667d84eda957989a0d1072815ced463ad60dd21 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-16 (Mon, 16 Feb 2026) Changed paths: M programs/us_pcsa/us_pcsa.cpp Log Message: ----------- Refactor `US_pcsa` to modernize signal/slot connections with new-style syntax for improved clarity and maintainability. Commit: 90e550a3655c4e118231ecaaf412f1844d959f34 https://github.com/ehb54/ultrascan3/commit/90e550a3655c4e118231ecaaf412f1844d959f34 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-16 (Mon, 16 Feb 2026) Changed paths: M programs/us_pcsa/us_pcsa.cpp M programs/us_pcsa/us_pcsa.h Log Message: ----------- Refactor `US_pcsa` to replace raw pointer `te_results` with `QPointer` for improved memory management and safety. Commit: 8a1a27c3f2cbf5cd2341fe453c6d33a6fe6f5182 https://github.com/ehb54/ultrascan3/commit/8a1a27c3f2cbf5cd2341fe453c6d33a6fe6f5182 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-16 (Mon, 16 Feb 2026) Changed paths: M programs/us_pcsa/us_pcsa.cpp M programs/us_pcsa/us_pcsa.h Log Message: ----------- Refactor `US_pcsa` to remove unused `child_closed` slot and redundant signal/slot connections. Adjust pointer initialization for improved clarity and use `clear()` for better reset logic. Commit: 2e87560345745184b24f6b1adc221a84a71ba937 https://github.com/ehb54/ultrascan3/commit/2e87560345745184b24f6b1adc221a84a71ba937 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-16 (Mon, 16 Feb 2026) Changed paths: M programs/us_pcsa/us_pcsa.cpp M programs/us_pcsa/us_pcsa.h Log Message: ----------- Add `reset`, `reset_data`, and `reset_gui` methods to `US_pcsa` for centralized reset logic. Commit: 915e9c1eeea05f71a9a76779507fc00a9f7c0cf1 https://github.com/ehb54/ultrascan3/commit/915e9c1eeea05f71a9a76779507fc00a9f7c0cf1 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-16 (Mon, 16 Feb 2026) Changed paths: M programs/us_pcsa/us_pcsa.cpp Log Message: ----------- Refactor `US_pcsa` for improved readability and maintainability: update conditional checks, initialize variables with modern syntax, and streamline GUI reset logic. Commit: f7feea2e4e70bf2d86cf344797d74e454c074bf1 https://github.com/ehb54/ultrascan3/commit/f7feea2e4e70bf2d86cf344797d74e454c074bf1 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-16 (Mon, 16 Feb 2026) Changed paths: M gui/us_analysis_base2.cpp Log Message: ----------- Refactor `US_AnalysisBase2`: remove redundant `const` in `QDir` declaration and increase precision for `vbar` field display. Commit: 7bc3455e432949e1baf6f295e3c3e2918ea647cd https://github.com/ehb54/ultrascan3/commit/7bc3455e432949e1baf6f295e3c3e2918ea647cd Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-16 (Mon, 16 Feb 2026) Changed paths: M programs/us_mwl_species_fit/us_mwl_species_fit.cpp Log Message: ----------- Refactor `US_MwlSpeciesFit`: enhance `reset_data` by clearing additional containers and initializing `us_gmp_auto_mode` to `false`. Commit: 45ebb0d251485129fedf336ed7fe31f374d468b8 https://github.com/ehb54/ultrascan3/commit/45ebb0d251485129fedf336ed7fe31f374d468b8 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-02-16 (Mon, 16 Feb 2026) Changed paths: M CMakeLists.txt M gui/us_model_loader.cpp M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_analysis_profile/us_anapro_utils.cpp M programs/us_astfem_sim/us_astfem_sim.cpp M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp M programs/us_fit_meniscus/CMakeLists.txt M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h A test/utils/test_us_regex.cpp Log Message: ----------- Merge branch 'main' into lukas/us_analysis_base_reset_button Commit: 7e1223aebe668ca75e872f8f2096bff99af80529 https://github.com/ehb54/ultrascan3/commit/7e1223aebe668ca75e872f8f2096bff99af80529 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-16 (Mon, 16 Feb 2026) Changed paths: M programs/us_2dsa/us_2dsa.cpp Log Message: ----------- Refactor `US_2dsa`: enhance `reset_data` by initializing `dset` and appending it to `dsets`. Commit: 7ad4a9ea5ad1ded27de94a0da82a9a2a240a01f4 https://github.com/ehb54/ultrascan3/commit/7ad4a9ea5ad1ded27de94a0da82a9a2a240a01f4 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-02-16 (Mon, 16 Feb 2026) Changed paths: M programs/us/CMakeLists.txt Log Message: ----------- Update Windows icon resource path in CMakeLists.txt Commit: 19e226c14175154289a18157f2ec01fee0d0092c https://github.com/ehb54/ultrascan3/commit/19e226c14175154289a18157f2ec01fee0d0092c Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-02-16 (Mon, 16 Feb 2026) Changed paths: M utils/CMakeLists.txt Log Message: ----------- Enable BigObj format for large files in CMake Added support for BigObj format in MSVC and GCC/Clang compilers for large files. Commit: 34e1f1f692d84430b5d47ba46266add455f73b66 https://github.com/ehb54/ultrascan3/commit/34e1f1f692d84430b5d47ba46266add455f73b66 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-02-16 (Mon, 16 Feb 2026) Changed paths: M programs/CMakeLists.txt Log Message: ----------- Add link options for Windows Release builds Add Windows-specific link options for Release builds to suppress console window Commit: 82c31c25f15c5c68ad67fa5c4f6adcae251c7ddd https://github.com/ehb54/ultrascan3/commit/82c31c25f15c5c68ad67fa5c4f6adcae251c7ddd Author: alexsav815 Date: 2026-02-16 (Mon, 16 Feb 2026) Changed paths: M programs/us_fit_meniscus/us_fit_meniscus.cpp Log Message: ----------- [1]GMP | 5. ANALSYSI | 6. REPORT -- for fit_meniscus_And_bottom option, make sure to capture mode of meniscus update in 5. ANALAYSIS|FITMEN stage - best fit, or manual update, pass to User Interations section of the Rpeort as well as to audit trail... Commit: 85154b5fde5b9b552646f5bd6334c86faa744dac https://github.com/ehb54/ultrascan3/commit/85154b5fde5b9b552646f5bd6334c86faa744dac Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-02-16 (Mon, 16 Feb 2026) Changed paths: M gui/us_analysis_base2.cpp Log Message: ----------- Add null check for dbP in disk_controls condition Commit: 1abad2a8d207a4293111f589493d27d7d093b877 https://github.com/ehb54/ultrascan3/commit/1abad2a8d207a4293111f589493d27d7d093b877 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-02-16 (Mon, 16 Feb 2026) Changed paths: M utils/CMakeLists.txt Log Message: ----------- Add BigObj compile options for us_utils_static Commit: 02b8e6a74eda39a2f7930e2a161c0a91392fff6d https://github.com/ehb54/ultrascan3/commit/02b8e6a74eda39a2f7930e2a161c0a91392fff6d Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-02-16 (Mon, 16 Feb 2026) Changed paths: M gui/us_analysis_base2.cpp M gui/us_analysis_base2.h M gui/us_plot.cpp M programs/us_2dsa/us_2dsa.cpp M programs/us_2dsa/us_2dsa.h M programs/us_dcdt/us_dcdt.cpp M programs/us_dcdt/us_dcdt.h M programs/us_mwl_species_fit/us_mwl_species_fit.cpp M programs/us_mwl_species_fit/us_mwl_species_fit.h M programs/us_pcsa/us_pcsa.cpp M programs/us_pcsa/us_pcsa.h M programs/us_second_moment/us_second_moment.cpp M programs/us_second_moment/us_second_moment.h M programs/us_vhw_enhanced/us_vhw_enhanced.cpp M programs/us_vhw_enhanced/us_vhw_enhanced.h Log Message: ----------- Merge pull request #364 from ehb54/lukas/us_analysis_base_reset_button Analysis programs reset button Commit: 8816a556aaf04bde3c1bf2d4a8ae26ea83682e81 https://github.com/ehb54/ultrascan3/commit/8816a556aaf04bde3c1bf2d4a8ae26ea83682e81 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-02-16 (Mon, 16 Feb 2026) Changed paths: M gui/us_analysis_base2.cpp M gui/us_analysis_base2.h M gui/us_plot.cpp M programs/us_2dsa/us_2dsa.cpp M programs/us_2dsa/us_2dsa.h M programs/us_dcdt/us_dcdt.cpp M programs/us_dcdt/us_dcdt.h M programs/us_mwl_species_fit/us_mwl_species_fit.cpp M programs/us_mwl_species_fit/us_mwl_species_fit.h M programs/us_pcsa/us_pcsa.cpp M programs/us_pcsa/us_pcsa.h M programs/us_second_moment/us_second_moment.cpp M programs/us_second_moment/us_second_moment.h M programs/us_vhw_enhanced/us_vhw_enhanced.cpp M programs/us_vhw_enhanced/us_vhw_enhanced.h Log Message: ----------- Merge branch 'main' into lukas/cmake_fixes Commit: c3f92aa4906fca184b43069e3fcf49aa9c65aa9d https://github.com/ehb54/ultrascan3/commit/c3f92aa4906fca184b43069e3fcf49aa9c65aa9d Author: alexsav815 Date: 2026-02-16 (Mon, 16 Feb 2026) Changed paths: M programs/us_fit_meniscus/us_fit_meniscus.cpp M programs/us_fit_meniscus/us_fit_meniscus.h Log Message: ----------- [2]GMP | 5. ANALSYSI | 6. REPORT -- for fit_meniscus_And_bottom option, make sure to capture mode of meniscus update in 5. ANALAYSIS|FITMEN stage - best fit, or manual update, pass to User Interations section of the Rpeort as well as to audit trail... Commit: 1aabf75b57be7e0c7096cab60625574e0b688794 https://github.com/ehb54/ultrascan3/commit/1aabf75b57be7e0c7096cab60625574e0b688794 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-02-17 (Tue, 17 Feb 2026) Changed paths: M gui/us_analysis_base2.cpp M programs/CMakeLists.txt M programs/us/CMakeLists.txt M utils/CMakeLists.txt Log Message: ----------- Merge pull request #365 from ehb54/lukas/cmake_fixes Lukas/cmake fixes Commit: 678ff7f6c7bed9024cc5f25e855c87b95ed0db50 https://github.com/ehb54/ultrascan3/commit/678ff7f6c7bed9024cc5f25e855c87b95ed0db50 Author: Saeed Mortezazadeh Date: 2026-02-17 (Tue, 17 Feb 2026) Changed paths: M programs/us_ga_init/us_ga_init.cpp M programs/us_ga_init/us_ga_init.h Log Message: ----------- us_ga_init: replace plot checkboxs with radiobuttons Commit: 7ce3e54ec1ff65f0e3dbbccd1119349c41eeb9a8 https://github.com/ehb54/ultrascan3/commit/7ce3e54ec1ff65f0e3dbbccd1119349c41eeb9a8 Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-02-17 (Tue, 17 Feb 2026) Changed paths: M gui/us_analysis_base2.cpp M gui/us_analysis_base2.h M gui/us_plot.cpp M programs/CMakeLists.txt M programs/us/CMakeLists.txt M programs/us_2dsa/us_2dsa.cpp M programs/us_2dsa/us_2dsa.h M programs/us_dcdt/us_dcdt.cpp M programs/us_dcdt/us_dcdt.h M programs/us_mwl_species_fit/us_mwl_species_fit.cpp M programs/us_mwl_species_fit/us_mwl_species_fit.h M programs/us_pcsa/us_pcsa.cpp M programs/us_pcsa/us_pcsa.h M programs/us_second_moment/us_second_moment.cpp M programs/us_second_moment/us_second_moment.h M programs/us_vhw_enhanced/us_vhw_enhanced.cpp M programs/us_vhw_enhanced/us_vhw_enhanced.h M utils/CMakeLists.txt Log Message: ----------- Merge branch 'main' into alexey-dev-issue736 Commit: 8fc7603a80492999df59ceed6230f0534734c5d8 https://github.com/ehb54/ultrascan3/commit/8fc7603a80492999df59ceed6230f0534734c5d8 Author: alexsav815 Date: 2026-02-17 (Tue, 17 Feb 2026) Changed paths: M programs/us_autoflow_analysis/us_autoflow_analysis.cpp M programs/us_fit_meniscus/us_fit_meniscus.cpp M programs/us_fit_meniscus/us_fit_meniscus.h Log Message: ----------- Merge pull request #366 from ehb54/alexey-dev-issue736 User Interactions for 5. ANALYSIS : FITMEN in the GMP report & Audit Trail in case of 'Fit Maniscus & Bottom' option Commit: 3902c84e081fd344c94094e6e7c120a10bf3c40f https://github.com/ehb54/ultrascan3/commit/3902c84e081fd344c94094e6e7c120a10bf3c40f Author: alexsav815 Date: 2026-02-18 (Wed, 18 Feb 2026) Changed paths: M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_analysis_profile/us_analysis_profile.h Log Message: ----------- GMP | 1. EXP. [Gen., 2DSA, PCSA] -- remove Varying Vbar & cons.f/f0 fields in 2DSA; field validators in all tabs.... Commit: 327e1e2fcb6c942e05029608fbe46152c3027639 https://github.com/ehb54/ultrascan3/commit/327e1e2fcb6c942e05029608fbe46152c3027639 Author: alexsav815 Date: 2026-02-18 (Wed, 18 Feb 2026) Changed paths: M programs/us_experiment/us_experiment_gui_optima.cpp Log Message: ----------- GMP | 1. EXP. : dataDist -- do not impose check for mismatched A/B channs. wvls. for S-data, and singe-channel RA data.... Commit: c9c5a8725b6a56caf94ad54e46417d544ae8c914 https://github.com/ehb54/ultrascan3/commit/c9c5a8725b6a56caf94ad54e46417d544ae8c914 Author: aaron-auc Date: 2026-02-18 (Wed, 18 Feb 2026) Changed paths: M CMakeLists.txt M CMakePresets.json A admin/cmake/toolchain-macos.cmake A admin/cmake/triplets/arm64-osx-dynamic.cmake M admin/cmake/triplets/x64-osx-dynamic.cmake R alpha/srcdevel R alpha/us.cpp M programs/us/CMakeLists.txt M scripts/build.sh Log Message: ----------- mod: remove alpha folder and update macos build Commit: ca2d76006ab1d5031061c41da2fdb082b475438e https://github.com/ehb54/ultrascan3/commit/ca2d76006ab1d5031061c41da2fdb082b475438e Author: aaron-auc Date: 2026-02-18 (Wed, 18 Feb 2026) Changed paths: M scripts/build.sh Log Message: ----------- mod: update environment variable echo statement Commit: 12375251f49081bbf84273353a7d7dba7dfa1cde https://github.com/ehb54/ultrascan3/commit/12375251f49081bbf84273353a7d7dba7dfa1cde Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-02-19 (Thu, 19 Feb 2026) Changed paths: M CMakeLists.txt M CMakePresets.json A admin/cmake/toolchain-macos.cmake A admin/cmake/triplets/arm64-osx-dynamic.cmake M admin/cmake/triplets/x64-osx-dynamic.cmake R alpha/srcdevel R alpha/us.cpp M programs/us/CMakeLists.txt M scripts/build.sh Log Message: ----------- Merge pull request #369 from ehb54/629-request-remove-alpha-folder-from-ultrascan3-repo Remove Alpha Folder Commit: d787112c42145adc032e986e17be63d8efd5dfda https://github.com/ehb54/ultrascan3/commit/d787112c42145adc032e986e17be63d8efd5dfda Author: Saeed Date: 2026-02-19 (Thu, 19 Feb 2026) Changed paths: M programs/us_ga_init/us_ga_init.cpp M programs/us_ga_init/us_ga_init.h Log Message: ----------- add check_draw_btn Commit: ba06a7cd941b1bb63391e1fba5d30baf782f4d3e https://github.com/ehb54/ultrascan3/commit/ba06a7cd941b1bb63391e1fba5d30baf782f4d3e Author: Saeed Date: 2026-02-19 (Thu, 19 Feb 2026) Changed paths: M CMakeLists.txt M CMakePresets.json A admin/cmake/toolchain-macos.cmake A admin/cmake/triplets/arm64-osx-dynamic.cmake M admin/cmake/triplets/x64-osx-dynamic.cmake R alpha/srcdevel R alpha/us.cpp M gui/us_analysis_base2.cpp M gui/us_analysis_base2.h M gui/us_model_loader.cpp M gui/us_plot.cpp M programs/CMakeLists.txt M programs/us/CMakeLists.txt M programs/us_2dsa/us_2dsa.cpp M programs/us_2dsa/us_2dsa.h M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_analysis_profile/us_anapro_utils.cpp M programs/us_astfem_sim/us_astfem_sim.cpp M programs/us_autoflow_analysis/us_autoflow_analysis.cpp M programs/us_dcdt/us_dcdt.cpp M programs/us_dcdt/us_dcdt.h M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp M programs/us_fit_meniscus/CMakeLists.txt M programs/us_fit_meniscus/us_fit_meniscus.cpp M programs/us_fit_meniscus/us_fit_meniscus.h M programs/us_mwl_species_fit/us_mwl_species_fit.cpp M programs/us_mwl_species_fit/us_mwl_species_fit.h M programs/us_pcsa/us_pcsa.cpp M programs/us_pcsa/us_pcsa.h M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_second_moment/us_second_moment.cpp M programs/us_second_moment/us_second_moment.h M programs/us_vhw_enhanced/us_vhw_enhanced.cpp M programs/us_vhw_enhanced/us_vhw_enhanced.h M scripts/build.sh A test/utils/test_us_regex.cpp M utils/CMakeLists.txt Log Message: ----------- Merge remote-tracking branch 'upstream/main' into ticket_699 Commit: 0e8e23a92b9a25ccfdbb4c7644d30119ab521a43 https://github.com/ehb54/ultrascan3/commit/0e8e23a92b9a25ccfdbb4c7644d30119ab521a43 Author: alexsav815 Date: 2026-02-19 (Thu, 19 Feb 2026) Changed paths: M CMakeLists.txt M CMakePresets.json A admin/cmake/toolchain-macos.cmake A admin/cmake/triplets/arm64-osx-dynamic.cmake M admin/cmake/triplets/x64-osx-dynamic.cmake R alpha/srcdevel R alpha/us.cpp M programs/us/CMakeLists.txt M scripts/build.sh Log Message: ----------- Merge branch 'main' into alexey-dev-issue718 Commit: ac5f152ac8ba6b0d7f9a65d40f3b7556bc970cee https://github.com/ehb54/ultrascan3/commit/ac5f152ac8ba6b0d7f9a65d40f3b7556bc970cee Author: alexsav815 Date: 2026-02-19 (Thu, 19 Feb 2026) Changed paths: M programs/us_com_project/us_com_project_gui.cpp Log Message: ----------- GMP | R&D -- connect Help btn to help().... Commit: 05244eacbe440afd5348b931a95305443dd6673d https://github.com/ehb54/ultrascan3/commit/05244eacbe440afd5348b931a95305443dd6673d Author: alexsav815 Date: 2026-02-19 (Thu, 19 Feb 2026) Changed paths: M gui/us_report_gui.cpp Log Message: ----------- GMP | 8. AProf.:Report -- shift tille for Pseudo3D plots up a bit... Commit: 9f65eb0ffed3357339a3500e400ea119f9827144 https://github.com/ehb54/ultrascan3/commit/9f65eb0ffed3357339a3500e400ea119f9827144 Author: alexsav815 Date: 2026-02-19 (Thu, 19 Feb 2026) Changed paths: M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_analysis_profile/us_analysis_profile.h Log Message: ----------- Merge pull request #367 from ehb54/alexey-dev-issue718 GMP | 1. EXP. [Gen., 2DSA, PCSA] -- remove Varying Vbar & cons.f/f0 from 2DSA settings; add validators for all numeric fields in Gen.,2DSA,PCSA Commit: fb0e5c780bc7aa696e368d9f6d46b22688fe5707 https://github.com/ehb54/ultrascan3/commit/fb0e5c780bc7aa696e368d9f6d46b22688fe5707 Author: alexsav815 Date: 2026-02-19 (Thu, 19 Feb 2026) Changed paths: M programs/us_experiment/us_proto_ranges.cpp Log Message: ----------- GMP | 7. Ranges.: Gary's selector -- tried to address increments in selections... Commit: a6fe9c7b13c638a88e1390c744efd98cbec59acf https://github.com/ehb54/ultrascan3/commit/a6fe9c7b13c638a88e1390c744efd98cbec59acf Author: Saeed Mortezazadeh Date: 2026-02-20 (Fri, 20 Feb 2026) Changed paths: M programs/us_ga_init/us_ga_init.cpp M programs/us_ga_init/us_ga_init.h M programs/us_ga_init/us_solutedata.cpp Log Message: ----------- add anno_label(int) to us_ga_init Commit: 8617cadc6147eda447864b6626622e9bffa4128e https://github.com/ehb54/ultrascan3/commit/8617cadc6147eda447864b6626622e9bffa4128e Author: Haben Gabir Date: 2026-02-20 (Fri, 20 Feb 2026) Changed paths: A doc/manual/source/_static/images/bad_grid.png A doc/manual/source/_static/images/beck_convert-2.png A doc/manual/source/_static/images/beck_converter.png A doc/manual/source/_static/images/good_grid.png A doc/manual/source/_static/images/grid-setup.png A doc/manual/source/_static/images/mwlr_spectra_3d.png A doc/manual/source/_static/images/mwlr_spectra_cont.png A 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doc/manual/source/mwl_species_sim.rst M doc/manual/source/mwl_spectra.rst M doc/manual/source/predict1.rst M doc/manual/source/ramp_data.rst M doc/manual/source/tmp.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/xpn_viewer.rst Log Message: ----------- WALICAFB Commit: 779bf5e32b16d7eddc415ecc2fe90709ac0026b9 https://github.com/ehb54/ultrascan3/commit/779bf5e32b16d7eddc415ecc2fe90709ac0026b9 Author: Haben Gabir Date: 2026-02-20 (Fri, 20 Feb 2026) Changed paths: A .github/workflows/bump-version.yml M CMakeLists.txt M CMakePresets.json A admin/cmake/toolchain-macos.cmake A admin/cmake/triplets/arm64-osx-dynamic.cmake M admin/cmake/triplets/x64-osx-dynamic.cmake R alpha/srcdevel R alpha/us.cpp M gui/us_analysis_base2.cpp M gui/us_analysis_base2.h M gui/us_csv_loader.cpp M gui/us_model_loader.cpp M gui/us_plot.cpp M gui/us_report_gui.cpp M gui/us_report_gui.h M programs/CMakeLists.txt M programs/us/CMakeLists.txt M programs/us_2dsa/us_2dsa.cpp M programs/us_2dsa/us_2dsa.h M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_analysis_profile/us_analysis_profile.h M programs/us_analysis_profile/us_anapro_utils.cpp M programs/us_astfem_sim/us_astfem_sim.cpp M programs/us_autoflow_analysis/us_autoflow_analysis.cpp M programs/us_dcdt/us_dcdt.cpp M programs/us_dcdt/us_dcdt.h M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp M programs/us_fit_meniscus/CMakeLists.txt M programs/us_fit_meniscus/us_fit_meniscus.cpp M programs/us_fit_meniscus/us_fit_meniscus.h M programs/us_integral/us_integral.cpp M programs/us_integral/us_integral.h M programs/us_mwl_species_fit/us_mwl_species_fit.cpp M programs/us_mwl_species_fit/us_mwl_species_fit.h M programs/us_pcsa/us_pcsa.cpp M programs/us_pcsa/us_pcsa.h M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_second_moment/us_second_moment.cpp M programs/us_second_moment/us_second_moment.h M programs/us_vhw_enhanced/us_vhw_enhanced.cpp M programs/us_vhw_enhanced/us_vhw_enhanced.h M scripts/build.sh A test/utils/test_us_regex.cpp M utils/CMakeLists.txt M utils/us_csv_data.cpp Log Message: ----------- Merge remote-tracking branch 'origin/main' into haben-Dev Commit: 935d35d3bb247201260925626ead40c7e5911908 https://github.com/ehb54/ultrascan3/commit/935d35d3bb247201260925626ead40c7e5911908 Author: Saeed Date: 2026-02-20 (Fri, 20 Feb 2026) Changed paths: M programs/us_legacy_converter/us_legacy_converter.cpp M programs/us_legacy_converter/us_legacy_converter.h Log Message: ----------- add help button to the us_legacy_converter Commit: a39e0c3fc901b37000aa384dff633eca9b5f21cc https://github.com/ehb54/ultrascan3/commit/a39e0c3fc901b37000aa384dff633eca9b5f21cc Author: Saeed Date: 2026-02-20 (Fri, 20 Feb 2026) Changed paths: M programs/us_query_rmsd/us_query_rmsd.cpp M programs/us_query_rmsd/us_query_rmsd.h Log Message: ----------- us_query_rmsd: add help button Commit: bb36da7046d87e90154684ecee5a92e3521fb317 https://github.com/ehb54/ultrascan3/commit/bb36da7046d87e90154684ecee5a92e3521fb317 Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-02-20 (Fri, 20 Feb 2026) Changed paths: M CMakeLists.txt M CMakePresets.json A admin/cmake/toolchain-macos.cmake A admin/cmake/triplets/arm64-osx-dynamic.cmake M admin/cmake/triplets/x64-osx-dynamic.cmake R alpha/srcdevel R alpha/us.cpp M programs/us/CMakeLists.txt M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_analysis_profile/us_analysis_profile.h M scripts/build.sh Log Message: ----------- Merge branch 'main' into alexey-dev-issue742 Commit: 9332b11c468511b91b824048956f411d88e92ba2 https://github.com/ehb54/ultrascan3/commit/9332b11c468511b91b824048956f411d88e92ba2 Author: Saeed Date: 2026-02-20 (Fri, 20 Feb 2026) Changed paths: M gui/us_extinction_gui.cpp M gui/us_extinction_gui.h M programs/us_query_rmsd/us_query_rmsd.cpp M programs/us_query_rmsd/us_query_rmsd.h M programs/us_ramp/us_ramp_gui.h M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- add help buttons Commit: 2786677b0b7c3dcd1f55bf7fb1c7a78257a3bada https://github.com/ehb54/ultrascan3/commit/2786677b0b7c3dcd1f55bf7fb1c7a78257a3bada Author: alexsav815 Date: 2026-02-20 (Fri, 20 Feb 2026) Changed paths: M programs/us_experiment/us_experiment_gui_optima.cpp Log Message: ----------- Merge pull request #368 from ehb54/alexey-dev-issue742 GMP | 1. EXP. : dataDist -- do not impose check for mismatched A/B channs wvl for S-data Commit: 3ca613086ee315038618d9ce0a642da1999e7608 https://github.com/ehb54/ultrascan3/commit/3ca613086ee315038618d9ce0a642da1999e7608 Author: alexsav815 Date: 2026-02-20 (Fri, 20 Feb 2026) Changed paths: M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_analysis_profile/us_analysis_profile.h M programs/us_experiment/us_experiment_gui_optima.cpp Log Message: ----------- Merge branch 'main' into alexey-dev-issue746 Commit: 67ca8b752f82ede833bb3f16e6e3f2f00801a3b5 https://github.com/ehb54/ultrascan3/commit/67ca8b752f82ede833bb3f16e6e3f2f00801a3b5 Author: alexsav815 Date: 2026-02-20 (Fri, 20 Feb 2026) Changed paths: M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_analysis_profile/us_analysis_profile.h M programs/us_experiment/us_experiment_gui_optima.cpp Log Message: ----------- Merge branch 'main' into alexey-dev-issue515 Commit: d0890b9202cd432e88acb5573eb12401399ac6df https://github.com/ehb54/ultrascan3/commit/d0890b9202cd432e88acb5573eb12401399ac6df Author: alexsav815 Date: 2026-02-20 (Fri, 20 Feb 2026) Changed paths: M programs/us_experiment/us_experiment_gui_optima.cpp Log Message: ----------- Merge branch 'main' into alexey-dev-issue702 Commit: 624105a44700833dbabe95610557269b85c9d938 https://github.com/ehb54/ultrascan3/commit/624105a44700833dbabe95610557269b85c9d938 Author: alexsav815 Date: 2026-02-21 (Sat, 21 Feb 2026) Changed paths: M programs/us_experiment/us_proto_ranges.cpp Log Message: ----------- Merge pull request #372 from ehb54/alexey-dev-issue702 GMP | 7. Ranges.: Gary's selector -- tried to address increments in wvl selections? Commit: 649a36c3a6bfc1942f2c116a43de591572e959a5 https://github.com/ehb54/ultrascan3/commit/649a36c3a6bfc1942f2c116a43de591572e959a5 Author: alexsav815 Date: 2026-02-21 (Sat, 21 Feb 2026) Changed paths: M programs/us_experiment/us_proto_ranges.cpp Log Message: ----------- Merge branch 'main' into alexey-dev-issue515 Commit: 253e03b46f36753d81db75a92dcf958d768d29f1 https://github.com/ehb54/ultrascan3/commit/253e03b46f36753d81db75a92dcf958d768d29f1 Author: alexsav815 Date: 2026-02-21 (Sat, 21 Feb 2026) Changed paths: M programs/us_com_project/us_com_project_gui.cpp M programs/us_com_project/us_com_project_gui.h M programs/us_experiment/us_experiment_gui_optima.h Log Message: ----------- [1]GMP | R&D -- connect Help btn to help().... Commit: 739bde48ce1e5596b769170a179b245bced40541 https://github.com/ehb54/ultrascan3/commit/739bde48ce1e5596b769170a179b245bced40541 Author: alexsav815 Date: 2026-02-21 (Sat, 21 Feb 2026) Changed paths: M programs/us_experiment/us_proto_ranges.cpp Log Message: ----------- Merge branch 'main' into alexey-dev-issue746 Commit: 2ea90efd5a9ebebf0c1fcef7291f0c14a0a853b6 https://github.com/ehb54/ultrascan3/commit/2ea90efd5a9ebebf0c1fcef7291f0c14a0a853b6 Author: alexsav815 Date: 2026-02-21 (Sat, 21 Feb 2026) Changed paths: M gui/us_report_gui.cpp Log Message: ----------- Merge pull request #371 from ehb54/alexey-dev-issue515 GMP | 8. AProf.:Report -- shift tille for Pseudo3D plots up a bit... 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doc/manual/uscolor2.body R doc/manual/usfont.body R doc/manual/usfont2.body R doc/manual/vhw_combine.body R doc/manual/vhw_distrib_plot.body R doc/manual/vhw_enhanced.body R doc/manual/wrapped-images.lst M gui/us_help.cpp M makeall.sh M scripts/build.sh R vcpkg M vcpkg.json Log Message: ----------- mod: delete legacy help, integrate sphinx help Commit: 3d08b0b47f4e2317e53a69e11dc522f164182ec7 https://github.com/ehb54/ultrascan3/commit/3d08b0b47f4e2317e53a69e11dc522f164182ec7 Author: aaron-auc Date: 2026-02-21 (Sat, 21 Feb 2026) Changed paths: M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake Log Message: ----------- mod: release only build for macos Commit: 7d351ae823d28a24be8d1406165cb8c4887fb1e7 https://github.com/ehb54/ultrascan3/commit/7d351ae823d28a24be8d1406165cb8c4887fb1e7 Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-02-21 (Sat, 21 Feb 2026) Changed paths: M gui/us_report_gui.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_proto_ranges.cpp Log Message: ----------- Merge branch 'main' into 527-enhancement-sphinx-migration-2 Commit: c8f871714964df445fd9b6dac06aa954bcc04d69 https://github.com/ehb54/ultrascan3/commit/c8f871714964df445fd9b6dac06aa954bcc04d69 Author: alexsav815 Date: 2026-02-21 (Sat, 21 Feb 2026) Changed paths: M programs/us_com_project/us_com_project_gui.cpp M programs/us_com_project/us_com_project_gui.h M programs/us_experiment/us_experiment_gui_optima.h Log Message: ----------- Merge pull request #370 from ehb54/alexey-dev-issue746 GMP | R&D -- connect Help btn to help().... Commit: 8eb6af8dac0c0037f48381a8383228ef7f55a358 https://github.com/ehb54/ultrascan3/commit/8eb6af8dac0c0037f48381a8383228ef7f55a358 Author: aaron-auc Date: 2026-02-22 (Sun, 22 Feb 2026) Changed paths: M etc/etc_belongs_list.txt R etc/us3-GMP-icon-128x128.ico R etc/us3-GMP-icon-128x128.png R etc/us3-GMP-icon-128x128.xpm R etc/us3-GMP-icon-32x32.ico R etc/us3-GMP-icon-32x32.png R etc/us3-GMP-icon-32x32.xpm R etc/us3-GMP-icon-48x48.ico R etc/us3-GMP-icon-48x48.png R etc/us3-GMP-icon-48x48.xpm Log Message: ----------- mod: remove gmp icons Commit: ed169be467f3b5054b1675c832cee30a332f58e1 https://github.com/ehb54/ultrascan3/commit/ed169be467f3b5054b1675c832cee30a332f58e1 Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-02-22 (Sun, 22 Feb 2026) Changed paths: A .github/workflows/bump-version.yml M .github/workflows/codeql-analysis.yml M CMakeLists.txt M CMakePresets.json M admin/cmake/FindQwt.cmake M admin/cmake/GenerateVersion.cmake A 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gui/us_investigator.cpp M gui/us_license.cpp M gui/us_minimize.cpp M gui/us_model_gui.cpp M gui/us_model_loader.cpp M gui/us_mwl_data.cpp M gui/us_new_spectrum.cpp M gui/us_new_spectrum.h M gui/us_passwd.cpp M gui/us_plot.cpp M gui/us_plot.h M gui/us_plot3d.cpp M gui/us_plot3d.h M gui/us_predict1.cpp M gui/us_predict1.h M gui/us_project_gui.h M gui/us_report_gui.cpp M gui/us_report_gui.h M gui/us_run_details2.cpp M gui/us_sassoc.cpp M gui/us_sassoc.h M gui/us_select_triples.h M gui/us_selectbox.h M gui/us_solution_gui.cpp M gui/us_solution_gui.h M gui/us_spectrodata.cpp M gui/us_spectrodata.h M gui/us_widgets.h M makeall.sh M programs/CMakeLists.txt M programs/main1.inc M programs/us/CMakeLists.txt M programs/us/revision.sh M programs/us/us.cpp M programs/us_2dsa/us_2dsa.cpp M programs/us_2dsa/us_2dsa.h M programs/us_2dsa/us_show_norm.cpp M programs/us_abde/us_abde_main.cpp M programs/us_abde/us_norm_profile.cpp M programs/us_abde/us_norm_profile.h M 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programs/us_dcdt/us_dcdt.h M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_density_match/us_density_match.cpp M programs/us_dmga_init/us_dmga_init.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h M programs/us_edit/us_edit_scan.cpp M programs/us_edit/us_edit_scan.h M programs/us_esigner_gmp/us_esigner_gmp.cpp M programs/us_esigner_gmp/us_esigner_gmp.h M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp M programs/us_export_legacy/us_export.cpp M programs/us_fds_filemanager/us_fds_filemanager.cpp M programs/us_fematch/CMakeLists.txt M programs/us_fematch/us_fematch.cpp M programs/us_fematch/us_plot_control_fem.cpp M programs/us_fematch/us_plot_control_fem.h M programs/us_fit_meniscus/CMakeLists.txt M programs/us_fit_meniscus/us_fit_meniscus.cpp M programs/us_fit_meniscus/us_fit_meniscus.h M programs/us_ga_init/us_ga_init.cpp M programs/us_ga_init/us_ga_init.h M programs/us_globalequil/us_eqfit_control.cpp M programs/us_globalequil/us_eqhistogram.cpp M programs/us_globalequil/us_eqmath.cpp M programs/us_globalequil/us_eqmodel_control.cpp M programs/us_globalequil/us_eqreporter.cpp M programs/us_globalequil/us_fit_worker.cpp M programs/us_globalequil/us_globalequil.cpp M programs/us_globalequil/us_globalequil.h M programs/us_grid_editor/us_grid_editor.cpp M programs/us_integral/us_integral.cpp M programs/us_integral/us_integral.h M programs/us_legacy_converter/us_legacy_converter.cpp M programs/us_manage_data/us_data_model.cpp M programs/us_modelmetrics/us_modelmetrics.cpp M programs/us_mwl_species_fit/CMakeLists.txt M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h M programs/us_mwl_species_fit/us_mwl_species_fit.cpp M programs/us_mwl_species_fit/us_mwl_species_fit.h M programs/us_mwl_spectra/us_mwl_spectra.cpp M programs/us_mwl_spectra/us_mwls_pltctl.cpp M programs/us_mwl_spectra/us_mwls_pltctl.h M programs/us_mwlr_viewer/us_mwl_pltctrl.cpp M programs/us_mwlr_viewer/us_mwl_pltctrl.h M programs/us_mwlr_viewer/us_mwlr_viewer.cpp M programs/us_pcsa/us_mlplot.cpp M programs/us_pcsa/us_mrecs_loader.cpp M programs/us_pcsa/us_pcsa.cpp M programs/us_pcsa/us_pcsa.h M programs/us_pcsa/us_rpscan.cpp M programs/us_pcsa/us_rpscan.h M programs/us_protocol_dev/CMakeLists.txt M programs/us_protocol_dev/us_protocol_dev_gui.h M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp M programs/us_pseudo_absorbance/us_add_refScan.cpp M programs/us_pseudo_absorbance/us_convert_scan.cpp M programs/us_pseudo_absorbance/us_convert_scan.h M programs/us_pseudo_absorbance/us_pseudo_absorbance.cpp M programs/us_pseudo_absorbance/us_remove_ri.cpp M programs/us_pseudo_absorbance/us_remove_ri.h M programs/us_query_rmsd/CMakeLists.txt M programs/us_query_rmsd/us_query_rmsd.cpp M programs/us_ramp/us_experiment_ra.cpp M programs/us_ramp/us_get_dbrun_ra.cpp M programs/us_ramp/us_mwlramp.cpp M programs/us_ramp/us_ramp.cpp M programs/us_ramp/us_ramp_gui.cpp M programs/us_ramp/us_ramp_gui.h M programs/us_reporter_gmp/CMakeLists.txt M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_rotor_calibration/us_rotor_calibration.cpp M programs/us_rotor_calibration/us_rotor_calibration.h M programs/us_second_moment/us_second_moment.cpp M programs/us_second_moment/us_second_moment.h M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h M programs/us_vhw_combine/us_vhw_combine.cpp M programs/us_vhw_combine/us_vhwc_pltctl.cpp M programs/us_vhw_combine/us_vhwc_pltctl.h M programs/us_vhw_enhanced/us_distrib_plot.cpp M programs/us_vhw_enhanced/us_vhw_enhanced.cpp M programs/us_vhw_enhanced/us_vhw_enhanced.h M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp M programs/us_xpn_viewer/us_xpn_viewer_gui.h M qwtplot3d/CMakeLists.txt M qwtplot3d/include/qwt3d_io_gl2ps.h M qwtplot3d/include/qwt3d_openglhelper.h M qwtplot3d/include/qwt3d_plot.h M qwtplot3d/include/qwt3d_surfaceplot.h M qwtplot3d/qwtplot3d.pro M qwtplot3d/src/qwt3d_io.cpp M qwtplot3d/src/qwt3d_io_gl2ps.cpp M qwtplot3d/src/qwt3d_label.cpp M qwtplot3d/src/qwt3d_lighting.cpp M qwtplot3d/src/qwt3d_movements.cpp M qwtplot3d/src/qwt3d_plot.cpp M qwtplot3d/src/qwt3d_surfaceplot.cpp M scripts/build.sh M test/utils/CMakeLists.txt M test/utils/test_us_ana_profile.cpp A test/utils/test_us_regex.cpp M test/utils/test_us_simparms.cpp M utils/CMakeLists.txt M utils/ius_db2.h M utils/libus_utils.pro M utils/us_ana_profile.cpp M utils/us_ana_profile.h M utils/us_analyte.cpp M utils/us_analyte.h M utils/us_archive.cpp M utils/us_archive.h M utils/us_astfem_math.cpp M utils/us_astfem_math.h M utils/us_astfem_rsa.cpp M utils/us_astfem_rsa.h M utils/us_buffer.cpp M utils/us_buffer.h M utils/us_cfa_data.cpp M utils/us_cfa_data.h M utils/us_constants.cpp M utils/us_constants.h M utils/us_convert.cpp M utils/us_convert.h M utils/us_convertio.cpp M utils/us_convertio.h M utils/us_crc.cpp M utils/us_crc.h M utils/us_crypto.cpp M utils/us_crypto.h M utils/us_csv_data.cpp M utils/us_csv_data.h M utils/us_dataIO.cpp M utils/us_dataIO.h M utils/us_datafiles.cpp M utils/us_datafiles.h M utils/us_db2.cpp M utils/us_db2.h M utils/us_dmga_constr.cpp M utils/us_eprofile.h M utils/us_experiment.cpp M utils/us_experiment.h M utils/us_extern.h M utils/us_geturl.cpp M utils/us_geturl.h M utils/us_global.cpp M utils/us_global.h M utils/us_gzip.cpp M utils/us_gzip.h M utils/us_hardware.h M utils/us_http_post.h M utils/us_hydrosim.cpp M utils/us_hydrosim.h M utils/us_lamm_astfvm.cpp M utils/us_lamm_astfvm.h M utils/us_license_t.cpp M utils/us_license_t.h M utils/us_link_ssl.cpp M utils/us_link_ssl.h M utils/us_lm.cpp M utils/us_local_server.cpp M utils/us_local_server.h M utils/us_math2.cpp M utils/us_math2.h M utils/us_matrix.cpp M utils/us_matrix.h M utils/us_memory.cpp M utils/us_memory.h M utils/us_model.cpp M utils/us_model.h M utils/us_noise.cpp M utils/us_noise.h M utils/us_pcsa_modelrec.cpp M utils/us_pcsa_modelrec.h M utils/us_project.cpp M utils/us_protocol_util.cpp M utils/us_protocol_util.h M utils/us_report.cpp M utils/us_report.h M utils/us_report_gmp.cpp M utils/us_rotor.cpp M utils/us_run_protocol.cpp M utils/us_run_protocol.h M utils/us_settings.cpp M utils/us_settings.h M utils/us_simparms.cpp M utils/us_simparms.h M utils/us_sleep.h M utils/us_solute.cpp M utils/us_solute.h M utils/us_solution.cpp M utils/us_solution.h M utils/us_solution_vals.h M utils/us_solve_sim.cpp M utils/us_stiffbase.cpp M utils/us_stiffbase.h M utils/us_tar.cpp M utils/us_tar.h M utils/us_time_state.h M utils/us_timer.cpp M utils/us_timer.h M utils/us_util.cpp M utils/us_util.h A utils/us_utils_qt.h M utils/us_vector.cpp M utils/us_vector.h M utils/us_xpn_data.cpp M utils/us_xpn_data.h M utils/us_zsolute.cpp M utils/us_zsolute.h M vcpkg.json Log Message: ----------- Merge branch 'main' into 666-bug-icons-dont-fill-space-on-new-macos Commit: a69727d693e60c02d3b9c4db2e16387437816ce5 https://github.com/ehb54/ultrascan3/commit/a69727d693e60c02d3b9c4db2e16387437816ce5 Author: aaron-auc Date: 2026-02-23 (Mon, 23 Feb 2026) Changed paths: M .gitignore M CMakeLists.txt A admin/cmake/triplets/arm64-windows.cmake M gui/CMakeLists.txt M programs/us/CMakeLists.txt M qwtplot3d/include/qwt3d_openglhelper.h A scripts/build.ps1 M vcpkg.json Log Message: ----------- Windows ARM64 build fixes: triplet, export macros, windeployqt Commit: 84d482ad6f56b2e3acc6c957d97719052eaefbd7 https://github.com/ehb54/ultrascan3/commit/84d482ad6f56b2e3acc6c957d97719052eaefbd7 Author: aaron-auc Date: 2026-02-23 (Mon, 23 Feb 2026) Changed paths: M CMakePresets.json R admin/cmake/toolchain-macos.cmake A admin/cmake/toolchain.cmake A scripts/build.bat M scripts/build.ps1 M scripts/build.sh R vcpkg Log Message: ----------- mod: add build for windows script and standardize linux and macos build Commit: d0f42eef0df776ad01ea51cc7505eeb80878b2d8 https://github.com/ehb54/ultrascan3/commit/d0f42eef0df776ad01ea51cc7505eeb80878b2d8 Author: Saeed Date: 2026-02-23 (Mon, 23 Feb 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- us_spectrum: removed unnecessary widgets Commit: e43bca35c3066c669ca922450241c6bdf5b4de40 https://github.com/ehb54/ultrascan3/commit/e43bca35c3066c669ca922450241c6bdf5b4de40 Author: aaron-auc Date: 2026-02-23 (Mon, 23 Feb 2026) Changed paths: M scripts/build.ps1 Log Message: ----------- fix: processor core check Commit: 70a4fd76fe5b6edf065fdf2b5f5ba0bcedb2165e https://github.com/ehb54/ultrascan3/commit/70a4fd76fe5b6edf065fdf2b5f5ba0bcedb2165e Author: aaron-auc Date: 2026-02-23 (Mon, 23 Feb 2026) Changed paths: M admin/cmake/toolchain.cmake Log Message: ----------- fix: remove force Commit: 6d4f2ac655f09a8a6b067f5a54b974908ab10aaf https://github.com/ehb54/ultrascan3/commit/6d4f2ac655f09a8a6b067f5a54b974908ab10aaf Author: aaron-auc Date: 2026-02-23 (Mon, 23 Feb 2026) Changed paths: M admin/cmake/toolchain.cmake Log Message: ----------- fix: linux arm64 now handled correctly Commit: 534da76a2eb5090416dc3e2fa4416db272ac9b91 https://github.com/ehb54/ultrascan3/commit/534da76a2eb5090416dc3e2fa4416db272ac9b91 Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-02-24 (Tue, 24 Feb 2026) Changed paths: M programs/us_com_project/us_com_project_gui.cpp M programs/us_com_project/us_com_project_gui.h M programs/us_experiment/us_experiment_gui_optima.h Log Message: ----------- Merge branch 'main' into 527-enhancement-sphinx-migration-2 Commit: 98c5f9693e9265ed8f1515603098010def86eb70 https://github.com/ehb54/ultrascan3/commit/98c5f9693e9265ed8f1515603098010def86eb70 Author: Saeed Date: 2026-02-24 (Tue, 24 Feb 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- rename labels Commit: 0880dfb2dd0e8e00e5613ff36d94c03e11edd27c https://github.com/ehb54/ultrascan3/commit/0880dfb2dd0e8e00e5613ff36d94c03e11edd27c Author: aaron-auc Date: 2026-02-24 (Tue, 24 Feb 2026) Changed paths: M CMakePresets.json M admin/cmake/toolchain.cmake A admin/cmake/triplets/arm64-linux.cmake Log Message: ----------- fix: linux arm64 dynamic and config path added Commit: 95f4bf13cb912979ba31f07969ede459ee9a3cfb https://github.com/ehb54/ultrascan3/commit/95f4bf13cb912979ba31f07969ede459ee9a3cfb Author: aaron-auc Date: 2026-02-24 (Tue, 24 Feb 2026) Changed paths: M etc/etc_belongs_list.txt A etc/us3-GMP-icon-128x128.ico A etc/us3-GMP-icon-128x128.png A etc/us3-GMP-icon-128x128.xpm A etc/us3-GMP-icon-32x32.ico A etc/us3-GMP-icon-32x32.png A etc/us3-GMP-icon-32x32.xpm A etc/us3-GMP-icon-48x48.ico A etc/us3-GMP-icon-48x48.png A etc/us3-GMP-icon-48x48.xpm Log Message: ----------- fix: returned gmp icons back to branch because at least one is used us_comproject.desktop:Icon=/opt/ultrascan3/etc/us3-GMP-icon-128x128.png Commit: d28e726d4e40aae7be0f55ed03c1e7fe45e36d00 https://github.com/ehb54/ultrascan3/commit/d28e726d4e40aae7be0f55ed03c1e7fe45e36d00 Author: aaron-auc Date: 2026-02-24 (Tue, 24 Feb 2026) Changed paths: M doc/manual/source/colorgradient.rst M doc/manual/source/conf.py M doc/manual/source/config.rst M doc/manual/source/experiment/range.rst M doc/manual/source/export_legacy.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/ga_initialize.rst M doc/manual/source/grid_editor.rst M doc/manual/source/manage_data.rst M doc/manual/source/mwl_spectra.rst M doc/manual/source/mwlr_viewer.rst M doc/manual/source/pcsa/pcsa_analys.rst M doc/manual/source/requirements.txt M doc/manual/source/us_project.rst M doc/manual/source/vhw_combine.rst Log Message: ----------- mod: migrate to sphinx-design from subfigure Commit: 8cef6842fe3282a17f7fe6a11688d966a17b86da https://github.com/ehb54/ultrascan3/commit/8cef6842fe3282a17f7fe6a11688d966a17b86da Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-02-25 (Wed, 25 Feb 2026) Changed paths: M .gitignore M CMakeLists.txt M CMakePresets.json R admin/cmake/toolchain-macos.cmake A admin/cmake/toolchain.cmake A admin/cmake/triplets/arm64-linux.cmake A admin/cmake/triplets/arm64-windows.cmake A etc/icons/make-icons.sh A etc/icons/us3-icon-master-512.png M etc/us3-icon-128x128.ico M etc/us3-icon-128x128.png M etc/us3-icon-32x32.png M etc/us3-icon-48x48.ico M etc/us3-icon-48x48.png M etc/us3-icon.icns M gui/CMakeLists.txt M gui/images/us3-icon-128x128.png M gui/images/us3-icon-16x16.png M gui/images/us3-icon-256x256.png M gui/images/us3-icon-32x32.png M gui/images/us3-icon-48x48.png M gui/images/us3-icon-512x512.png M gui/images/us3-icon-64x64.png M programs/us/CMakeLists.txt M qwtplot3d/include/qwt3d_openglhelper.h A scripts/build.bat A scripts/build.ps1 M scripts/build.sh R vcpkg M vcpkg.json Log Message: ----------- Merge pull request #337 from ehb54/666-bug-icons-dont-fill-space-on-new-macos New Icons Commit: f22ac1211864fd6e1e0f4bd0ab603df9a6703163 https://github.com/ehb54/ultrascan3/commit/f22ac1211864fd6e1e0f4bd0ab603df9a6703163 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-26 (Thu, 26 Feb 2026) Changed paths: M programs/us_mwl_species_sim/us_mwl_species_sim.cpp M utils/us_astfem_math.cpp M utils/us_cfa_data.cpp M utils/us_time_state.cpp M utils/us_time_state.h M utils/us_xpn_data.cpp Log Message: ----------- Add support for `TIMESTATE_TYPE` and `IMPORT_TYPE` in `US_TimeState`: introduce enums, accessor methods, and XML serialization logic. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 92969167df27d9df138b7faee2cb16d988228790 https://github.com/ehb54/ultrascan3/commit/92969167df27d9df138b7faee2cb16d988228790 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-02-26 (Thu, 26 Feb 2026) Changed paths: M utils/us_astfem_math.cpp M utils/us_astfem_math.h Log Message: ----------- Refactor `US_AstfemMath`: add parameter names to function signatures, update `check_acceleration` to include optional `timestate` argument, and adjust related logic. Commit: 8318d566a89cb3e06093e1d79d56d11d3488103a https://github.com/ehb54/ultrascan3/commit/8318d566a89cb3e06093e1d79d56d11d3488103a Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-02-26 (Thu, 26 Feb 2026) Changed paths: M .gitignore M CMakeLists.txt M CMakePresets.json R admin/cmake/toolchain-macos.cmake A admin/cmake/toolchain.cmake A admin/cmake/triplets/arm64-linux.cmake A admin/cmake/triplets/arm64-windows.cmake A etc/icons/make-icons.sh A etc/icons/us3-icon-master-512.png M etc/us3-icon-128x128.ico M etc/us3-icon-128x128.png M etc/us3-icon-32x32.png M etc/us3-icon-48x48.ico M etc/us3-icon-48x48.png M etc/us3-icon.icns M gui/CMakeLists.txt M gui/images/us3-icon-128x128.png M gui/images/us3-icon-16x16.png M gui/images/us3-icon-256x256.png M gui/images/us3-icon-32x32.png M gui/images/us3-icon-48x48.png M gui/images/us3-icon-512x512.png M gui/images/us3-icon-64x64.png M programs/us/CMakeLists.txt M qwtplot3d/include/qwt3d_openglhelper.h A scripts/build.bat A scripts/build.ps1 M scripts/build.sh M vcpkg.json Log Message: ----------- Merge branch 'main' into 527-enhancement-sphinx-migration-2 Commit: 4bb72c42f9441f20b9b825741d31d186a728fe4c https://github.com/ehb54/ultrascan3/commit/4bb72c42f9441f20b9b825741d31d186a728fe4c Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-02-26 (Thu, 26 Feb 2026) Changed paths: M .gitignore M CMakeLists.txt M CMakePresets.json A admin/cmake/toolchain.cmake A admin/cmake/triplets/arm64-linux.cmake A admin/cmake/triplets/arm64-osx-dynamic.cmake A admin/cmake/triplets/arm64-windows.cmake M admin/cmake/triplets/x64-osx-dynamic.cmake R alpha/srcdevel R alpha/us.cpp A etc/icons/make-icons.sh A etc/icons/us3-icon-master-512.png M etc/us3-icon-128x128.ico M etc/us3-icon-128x128.png M etc/us3-icon-32x32.png M etc/us3-icon-48x48.ico M etc/us3-icon-48x48.png M etc/us3-icon.icns M gui/CMakeLists.txt M gui/images/us3-icon-128x128.png M gui/images/us3-icon-16x16.png M gui/images/us3-icon-256x256.png M gui/images/us3-icon-32x32.png M gui/images/us3-icon-48x48.png M gui/images/us3-icon-512x512.png M gui/images/us3-icon-64x64.png M gui/us_analysis_base2.cpp M gui/us_analysis_base2.h M gui/us_csv_loader.cpp M gui/us_model_loader.cpp M gui/us_plot.cpp M gui/us_report_gui.cpp M gui/us_report_gui.h M programs/CMakeLists.txt M programs/us/CMakeLists.txt M programs/us_2dsa/us_2dsa.cpp M programs/us_2dsa/us_2dsa.h M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_analysis_profile/us_analysis_profile.h M programs/us_analysis_profile/us_anapro_utils.cpp M programs/us_astfem_sim/us_astfem_sim.cpp M programs/us_autoflow_analysis/us_autoflow_analysis.cpp M programs/us_com_project/us_com_project_gui.cpp M programs/us_com_project/us_com_project_gui.h M programs/us_dcdt/us_dcdt.cpp M programs/us_dcdt/us_dcdt.h M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp M programs/us_fit_meniscus/CMakeLists.txt M programs/us_fit_meniscus/us_fit_meniscus.cpp M programs/us_fit_meniscus/us_fit_meniscus.h M programs/us_mwl_species_fit/us_mwl_species_fit.cpp M programs/us_mwl_species_fit/us_mwl_species_fit.h M programs/us_pcsa/us_pcsa.cpp M programs/us_pcsa/us_pcsa.h M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_second_moment/us_second_moment.cpp M programs/us_second_moment/us_second_moment.h M programs/us_vhw_enhanced/us_vhw_enhanced.cpp M programs/us_vhw_enhanced/us_vhw_enhanced.h M qwtplot3d/include/qwt3d_openglhelper.h A scripts/build.bat A scripts/build.ps1 M scripts/build.sh A test/utils/test_us_regex.cpp M utils/CMakeLists.txt M utils/us_csv_data.cpp R vcpkg M vcpkg.json Log Message: ----------- Merge branch 'main' into ticket_747 Commit: 89b7691a714d92e99e335e23378d225aa3b1b536 https://github.com/ehb54/ultrascan3/commit/89b7691a714d92e99e335e23378d225aa3b1b536 Author: ehb54 Date: 2026-02-26 (Thu, 26 Feb 2026) Changed paths: M programs/us/revision.sh Log Message: ----------- fix revision.sh checks osx/linux compat. Commit: b1b7791e9c3922286c2d9d56c2f0a378911720ee https://github.com/ehb54/ultrascan3/commit/b1b7791e9c3922286c2d9d56c2f0a378911720ee Author: Saeed Date: 2026-02-26 (Thu, 26 Feb 2026) Changed paths: M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.h Log Message: ----------- add Rh to us_pseudo3d_combine Commit: bd32e3b102e354732b319bc5687719785b83d3f2 https://github.com/ehb54/ultrascan3/commit/bd32e3b102e354732b319bc5687719785b83d3f2 Author: Saeed Date: 2026-02-26 (Thu, 26 Feb 2026) Changed paths: M .gitignore M CMakeLists.txt M CMakePresets.json R admin/cmake/toolchain-macos.cmake A admin/cmake/toolchain.cmake A admin/cmake/triplets/arm64-linux.cmake A admin/cmake/triplets/arm64-windows.cmake A etc/icons/make-icons.sh A etc/icons/us3-icon-master-512.png M etc/us3-icon-128x128.ico M etc/us3-icon-128x128.png M etc/us3-icon-32x32.png M etc/us3-icon-48x48.ico M etc/us3-icon-48x48.png M etc/us3-icon.icns M gui/CMakeLists.txt M gui/images/us3-icon-128x128.png M gui/images/us3-icon-16x16.png M gui/images/us3-icon-256x256.png M gui/images/us3-icon-32x32.png M gui/images/us3-icon-48x48.png M gui/images/us3-icon-512x512.png M gui/images/us3-icon-64x64.png M gui/us_report_gui.cpp M programs/us/CMakeLists.txt M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_analysis_profile/us_analysis_profile.h M programs/us_com_project/us_com_project_gui.cpp M programs/us_com_project/us_com_project_gui.h M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp M qwtplot3d/include/qwt3d_openglhelper.h A scripts/build.bat A scripts/build.ps1 M scripts/build.sh R vcpkg M vcpkg.json Log Message: ----------- Merge remote-tracking branch 'upstream/main' into ticket_699 Commit: 8c545d6f5c77a42afc10d3badcaa8f9b34866f2d https://github.com/ehb54/ultrascan3/commit/8c545d6f5c77a42afc10d3badcaa8f9b34866f2d Author: Saeed Date: 2026-02-26 (Thu, 26 Feb 2026) Changed paths: M .gitignore M CMakeLists.txt M CMakePresets.json R admin/cmake/toolchain-macos.cmake A admin/cmake/toolchain.cmake A admin/cmake/triplets/arm64-linux.cmake A admin/cmake/triplets/arm64-windows.cmake A etc/icons/make-icons.sh A etc/icons/us3-icon-master-512.png M etc/us3-icon-128x128.ico M etc/us3-icon-128x128.png M etc/us3-icon-32x32.png M etc/us3-icon-48x48.ico M etc/us3-icon-48x48.png M etc/us3-icon.icns M gui/CMakeLists.txt M gui/images/us3-icon-128x128.png M gui/images/us3-icon-16x16.png M gui/images/us3-icon-256x256.png M gui/images/us3-icon-32x32.png M gui/images/us3-icon-48x48.png M gui/images/us3-icon-512x512.png M gui/images/us3-icon-64x64.png M gui/us_report_gui.cpp M programs/us/CMakeLists.txt M programs/us_com_project/us_com_project_gui.cpp M programs/us_com_project/us_com_project_gui.h M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp M qwtplot3d/include/qwt3d_openglhelper.h A scripts/build.bat A scripts/build.ps1 M scripts/build.sh R vcpkg M vcpkg.json Log Message: ----------- Merge remote-tracking branch 'upstream/main' into ticket_748 Commit: 38b548536c2c0458b2cc85f5663ca56eb9538f3f https://github.com/ehb54/ultrascan3/commit/38b548536c2c0458b2cc85f5663ca56eb9538f3f Author: HabGab Date: 2026-02-26 (Thu, 26 Feb 2026) Changed paths: M gui/us_spectrodata.h M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_ddist_combine/us_ddist_combine.h M programs/us_ga_init/us_ga_init.cpp M programs/us_ga_init/us_ga_init.h M programs/us_ga_init/us_solutedata.cpp M programs/us_integral/us_integral.cpp M programs/us_integral/us_integral.h M programs/us_modelmetrics/us_modelmetrics.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.h Log Message: ----------- Merge pull request #362 from samo38/ticket_699 Ticket 699: adding Hydrodynamic radius to additional plotting programs Commit: 572bb723ed591be3225aacbdbc387c93c17ca792 https://github.com/ehb54/ultrascan3/commit/572bb723ed591be3225aacbdbc387c93c17ca792 Author: emre brookes Date: 2026-02-26 (Thu, 26 Feb 2026) Changed paths: M gui/us_spectrodata.h M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_ddist_combine/us_ddist_combine.h M programs/us_ga_init/us_ga_init.cpp M programs/us_ga_init/us_ga_init.h M programs/us_ga_init/us_solutedata.cpp M programs/us_integral/us_integral.cpp M programs/us_integral/us_integral.h M programs/us_modelmetrics/us_modelmetrics.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.h Log Message: ----------- Merge branch 'main' into ehb54-issue-670 Commit: 6dd71c26fbdb258b25259c7c5e41be982d54a809 https://github.com/ehb54/ultrascan3/commit/6dd71c26fbdb258b25259c7c5e41be982d54a809 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-02-27 (Fri, 27 Feb 2026) Changed paths: M utils/us_crypto.cpp Log Message: ----------- Refactor US_Crypto for AES-256-GCM encryption Commit: 1461b65d9eae700e3429db2b7c19c35361fea861 https://github.com/ehb54/ultrascan3/commit/1461b65d9eae700e3429db2b7c19c35361fea861 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-02-27 (Fri, 27 Feb 2026) Changed paths: M utils/us_crypto.h Log Message: ----------- Add decryptLegacy function and update decrypt signature Commit: ed2647558eb754fa66c8e7d52d3f0b8efac2c53c https://github.com/ehb54/ultrascan3/commit/ed2647558eb754fa66c8e7d52d3f0b8efac2c53c Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-02-27 (Fri, 27 Feb 2026) Changed paths: M test/utils/test_us_crypto.cpp Log Message: ----------- Update encryption tests to expect invalid results Commit: 27402a271781fa16ae00a693e5ce8e3f06e8e33e https://github.com/ehb54/ultrascan3/commit/27402a271781fa16ae00a693e5ce8e3f06e8e33e Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-02-27 (Fri, 27 Feb 2026) Changed paths: M utils/us_crypto.h Log Message: ----------- Fix parameter description for decrypt functions Commit: 344a4930c5819ebfd2875eccc84d0a44a446ee31 https://github.com/ehb54/ultrascan3/commit/344a4930c5819ebfd2875eccc84d0a44a446ee31 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-02-27 (Fri, 27 Feb 2026) Changed paths: M utils/us_crypto.cpp Log Message: ----------- Fix encryption finalization logic in us_crypto.cpp Commit: 817a32ad7fe5e5c35ec0479673a2f4c20a7a8e3c https://github.com/ehb54/ultrascan3/commit/817a32ad7fe5e5c35ec0479673a2f4c20a7a8e3c Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-02-27 (Fri, 27 Feb 2026) Changed paths: M utils/us_crypto.cpp Log Message: ----------- Fix tag data retrieval in EVP_CIPHER_CTX_ctrl Commit: 85100ef73842bc75a8f210f7b9038301adae82db https://github.com/ehb54/ultrascan3/commit/85100ef73842bc75a8f210f7b9038301adae82db Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-02-27 (Fri, 27 Feb 2026) Changed paths: M gui/us_spectrodata.h M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_ddist_combine/us_ddist_combine.h M programs/us_ga_init/us_ga_init.cpp M programs/us_ga_init/us_ga_init.h M programs/us_ga_init/us_solutedata.cpp M programs/us_integral/us_integral.cpp M programs/us_integral/us_integral.h M programs/us_modelmetrics/us_modelmetrics.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.h Log Message: ----------- Merge branch 'main' into 527-enhancement-sphinx-migration-2 Commit: 7f63285b165bc88c2a317f9f368082e0d24d8861 https://github.com/ehb54/ultrascan3/commit/7f63285b165bc88c2a317f9f368082e0d24d8861 Author: aaron-auc Date: 2026-02-28 (Sat, 28 Feb 2026) Changed paths: M .gitignore M CMakeLists.txt A admin/cmake/MacDeploy.cmake R buildsys/vcpkg/overlay-ports/qt5-tools/fix-pkgconfig-qt5uiplugin-not-found.patch R buildsys/vcpkg/overlay-ports/qt5-tools/fix-spawnvp-argv.patch R buildsys/vcpkg/overlay-ports/qt5-tools/libclang.patch R buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake R buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json M doc/manual/CMakeLists.txt A doc/manual/StageAssistant.cmake M doc/manual/source/mwl_spectra.rst M gui/CMakeLists.txt M gui/us_help.cpp M programs/us_helpdaemon/us_helpdaemon.cpp M qwtplot3d/CMakeLists.txt M scripts/build.sh M vcpkg.json Log Message: ----------- fix: fix qt help search and implement dmg Commit: 8e3d67b30d1a4eaf6faf0d18d80a835288ee5ae7 https://github.com/ehb54/ultrascan3/commit/8e3d67b30d1a4eaf6faf0d18d80a835288ee5ae7 Author: aaron-auc Date: 2026-02-28 (Sat, 28 Feb 2026) Changed paths: M .gitignore M CMakeLists.txt M CMakePresets.json R admin/cmake/toolchain-macos.cmake A admin/cmake/toolchain.cmake A admin/cmake/triplets/arm64-linux.cmake A admin/cmake/triplets/arm64-windows.cmake A etc/icons/make-icons.sh A etc/icons/us3-icon-master-512.png M etc/us3-icon-128x128.ico M etc/us3-icon-128x128.png M etc/us3-icon-32x32.png M etc/us3-icon-48x48.ico M etc/us3-icon-48x48.png M etc/us3-icon.icns M gui/CMakeLists.txt M gui/images/us3-icon-128x128.png M gui/images/us3-icon-16x16.png M gui/images/us3-icon-256x256.png M gui/images/us3-icon-32x32.png M gui/images/us3-icon-48x48.png M gui/images/us3-icon-512x512.png M gui/images/us3-icon-64x64.png M gui/us_spectrodata.h M programs/us/CMakeLists.txt M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_ddist_combine/us_ddist_combine.h M programs/us_ga_init/us_ga_init.cpp M programs/us_ga_init/us_ga_init.h M programs/us_ga_init/us_solutedata.cpp M programs/us_integral/us_integral.cpp M programs/us_integral/us_integral.h M programs/us_modelmetrics/us_modelmetrics.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.h M qwtplot3d/include/qwt3d_openglhelper.h A scripts/build.bat A scripts/build.ps1 M scripts/build.sh M vcpkg.json Log Message: ----------- Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2 # Conflicts: # .gitignore # scripts/build.sh Commit: ef3356b450a93ec526f92ee27da0a9bfcfa9c04a https://github.com/ehb54/ultrascan3/commit/ef3356b450a93ec526f92ee27da0a9bfcfa9c04a Author: aaron-auc Date: 2026-03-01 (Sun, 01 Mar 2026) Changed paths: M LICENSE.txt Log Message: ----------- fix: text was original utf-8 so quotes became questions marks with ascii tool. Changed ? to ascii quotes. Commit: 096f3590c1a57a798a0c13863e80d333a690b4cf https://github.com/ehb54/ultrascan3/commit/096f3590c1a57a798a0c13863e80d333a690b4cf Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-02 (Mon, 02 Mar 2026) Changed paths: M utils/us_crypto.cpp Log Message: ----------- Fix type casting for GCM tag data Commit: ca6f560338cfe03c4fa0e60bb95577b526dbf2ed https://github.com/ehb54/ultrascan3/commit/ca6f560338cfe03c4fa0e60bb95577b526dbf2ed Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-02 (Mon, 02 Mar 2026) Changed paths: M utils/us_crypto.cpp Log Message: ----------- Fix type casting for GCM tag in us_crypto.cpp Commit: 82c2dc2269b90376cf1f69ca3f88b4bee38c641e https://github.com/ehb54/ultrascan3/commit/82c2dc2269b90376cf1f69ca3f88b4bee38c641e Author: aaron-auc Date: 2026-03-02 (Mon, 02 Mar 2026) Changed paths: R admin/cmake/MacDeploy.cmake A admin/cmake/packaging/macos/MacDeploy.cmake A admin/cmake/packaging/macos/MacOsPkg.cmake A pkg/macos/component.plist A pkg/macos/distribution.xml.in A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3 A pkg/macos/postinstall A pkg/macos/preinstall A pkg/macos/resources/Welcome.txt.in A pkg/macos/resources/background.png A pkg/macos/ultrascan_sysctl.plist A pkg/macos/uninstall.sh M scripts/build.sh Log Message: ----------- add: launcher and packaging step Commit: 88ef4e481d1b4ea751d997b156e3782f1befce93 https://github.com/ehb54/ultrascan3/commit/88ef4e481d1b4ea751d997b156e3782f1befce93 Author: aaron-auc Date: 2026-03-02 (Mon, 02 Mar 2026) Changed paths: M CMakeLists.txt M CMakePresets.json M admin/cmake/packaging/macos/MacDeploy.cmake M admin/cmake/toolchain.cmake M doc/manual/CMakeLists.txt M doc/manual/StageAssistant.cmake Log Message: ----------- add: working qt6 build and install Commit: 5ee4575063fb99b0b70eb335bc0d88e3a903b857 https://github.com/ehb54/ultrascan3/commit/5ee4575063fb99b0b70eb335bc0d88e3a903b857 Author: Saeed Date: 2026-03-03 (Tue, 03 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- us_spectrum: update GUI and DataProfile Commit: d864a615e96c4dd2c66a738120c35c6eb556d647 https://github.com/ehb54/ultrascan3/commit/d864a615e96c4dd2c66a738120c35c6eb556d647 Author: Saeed Date: 2026-03-03 (Tue, 03 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- us_spectrum: use minmax Commit: 644141ae003ec988b86eb7b01c1e21cf208b0dac https://github.com/ehb54/ultrascan3/commit/644141ae003ec988b86eb7b01c1e21cf208b0dac Author: Saeed Date: 2026-03-04 (Wed, 04 Mar 2026) Changed paths: M gui/us_spectrodata.h M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_ddist_combine/us_ddist_combine.h M programs/us_ga_init/us_ga_init.cpp M programs/us_ga_init/us_ga_init.h M programs/us_ga_init/us_solutedata.cpp M programs/us_integral/us_integral.cpp M programs/us_integral/us_integral.h M programs/us_modelmetrics/us_modelmetrics.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.h Log Message: ----------- Merge remote-tracking branch 'upstream/main' into ticket_748 Commit: d1215ab67e2f9e4aa0bcf349eac8da7f58a9be6a https://github.com/ehb54/ultrascan3/commit/d1215ab67e2f9e4aa0bcf349eac8da7f58a9be6a Author: aaron-auc Date: 2026-03-04 (Wed, 04 Mar 2026) Changed paths: M etc/etc_belongs_list.txt R etc/us3-GMP-icon-128x128.ico M etc/us3-GMP-icon-128x128.png R etc/us3-GMP-icon-128x128.xpm R etc/us3-GMP-icon-32x32.ico R etc/us3-GMP-icon-32x32.png R etc/us3-GMP-icon-32x32.xpm R etc/us3-GMP-icon-48x48.ico R etc/us3-GMP-icon-48x48.png R etc/us3-GMP-icon-48x48.xpm Log Message: ----------- mod: update 128x128 us-gmp icon and remove others Commit: ff02149480e771cbc205a241cee2322ae52a5ea3 https://github.com/ehb54/ultrascan3/commit/ff02149480e771cbc205a241cee2322ae52a5ea3 Author: aaron-auc Date: 2026-03-04 (Wed, 04 Mar 2026) Changed paths: R propignore R proppng R proptext Log Message: ----------- mod: delete svn files Commit: 0d744f1905b897d66da68befb43637e8ac4cd7bc https://github.com/ehb54/ultrascan3/commit/0d744f1905b897d66da68befb43637e8ac4cd7bc Author: aaron-auc Date: 2026-03-04 (Wed, 04 Mar 2026) Changed paths: R README.linguist M gui/libus_gui.pro M programs/us/us.pro R programs/us/us_de_DE.ts M programs/us_config/us_config.pro R qwtplot3d/lingua_de.ts M utils/libus_utils.pro Log Message: ----------- mod: remove deprecated translation files and settings Commit: 04583d8a1b0bcf01875f31b93a12343610284126 https://github.com/ehb54/ultrascan3/commit/04583d8a1b0bcf01875f31b93a12343610284126 Author: aaron-auc Date: 2026-03-04 (Wed, 04 Mar 2026) Changed paths: M CMakeLists.txt A admin/cmake/packaging/windows/WinDeploy.cmake A admin/cmake/packaging/windows/WinPkg.cmake Log Message: ----------- add: windows installer Commit: 20b958cec1d253988daedd88a2fec65efd28448d https://github.com/ehb54/ultrascan3/commit/20b958cec1d253988daedd88a2fec65efd28448d Author: aaron-auc Date: 2026-03-04 (Wed, 04 Mar 2026) Changed paths: M scripts/build.ps1 Log Message: ----------- add: pkg command to build.ps1 Commit: 722ffd5c4e0c7d1f2f2c27127e065270ae3c7598 https://github.com/ehb54/ultrascan3/commit/722ffd5c4e0c7d1f2f2c27127e065270ae3c7598 Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-04 (Wed, 04 Mar 2026) Changed paths: M etc/etc_belongs_list.txt R etc/us3-GMP-icon-128x128.ico M etc/us3-GMP-icon-128x128.png R etc/us3-GMP-icon-128x128.xpm R etc/us3-GMP-icon-32x32.ico R etc/us3-GMP-icon-32x32.png R etc/us3-GMP-icon-32x32.xpm R etc/us3-GMP-icon-48x48.ico R etc/us3-GMP-icon-48x48.png R etc/us3-GMP-icon-48x48.xpm Log Message: ----------- Merge pull request #380 from ehb54/773-request-update-us-3-gmp-icons Icon Maintenance Commit: 47dbf4a3837c551d64f6436f25aa7f5f7d482fad https://github.com/ehb54/ultrascan3/commit/47dbf4a3837c551d64f6436f25aa7f5f7d482fad Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-04 (Wed, 04 Mar 2026) Changed paths: Log Message: ----------- Merge branch 'main' into 775-bug-svn-files Commit: 93fb5f9f839b1aea6d85ed568acc18030ebed5c1 https://github.com/ehb54/ultrascan3/commit/93fb5f9f839b1aea6d85ed568acc18030ebed5c1 Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-04 (Wed, 04 Mar 2026) Changed paths: Log Message: ----------- Merge branch 'main' into 756-bug-translation-maintenance Commit: fe5370afd345acf40744a8c872c09eef88887bba https://github.com/ehb54/ultrascan3/commit/fe5370afd345acf40744a8c872c09eef88887bba Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-04 (Wed, 04 Mar 2026) Changed paths: R propignore R proppng R proptext Log Message: ----------- Merge pull request #381 from ehb54/775-bug-svn-files Remove Legacy SVN Files Commit: b1b7bdf318164406971f4188a7b3cf8b0aacbbaa https://github.com/ehb54/ultrascan3/commit/b1b7bdf318164406971f4188a7b3cf8b0aacbbaa Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-04 (Wed, 04 Mar 2026) Changed paths: Log Message: ----------- Merge branch 'main' into 756-bug-translation-maintenance Commit: 90e9cf2eb989a85420f4668067092a143d4457a9 https://github.com/ehb54/ultrascan3/commit/90e9cf2eb989a85420f4668067092a143d4457a9 Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-04 (Wed, 04 Mar 2026) Changed paths: R README.linguist M gui/libus_gui.pro M programs/us/us.pro R programs/us/us_de_DE.ts M programs/us_config/us_config.pro R qwtplot3d/lingua_de.ts M utils/libus_utils.pro Log Message: ----------- Merge pull request #382 from ehb54/756-bug-translation-maintenance Translation File Maintenance Commit: 2698e05dd320a374785cab43ed05a52db3c5c3a7 https://github.com/ehb54/ultrascan3/commit/2698e05dd320a374785cab43ed05a52db3c5c3a7 Author: aaron-auc Date: 2026-03-04 (Wed, 04 Mar 2026) Changed paths: M admin/cmake/packaging/windows/WinPkg.cmake M scripts/build.ps1 Log Message: ----------- fix: missing programs in installer package Commit: 499648d1ea27751d008981e0d9f1447cfbef7072 https://github.com/ehb54/ultrascan3/commit/499648d1ea27751d008981e0d9f1447cfbef7072 Author: aaron-auc Date: 2026-03-04 (Wed, 04 Mar 2026) Changed paths: M CMakeLists.txt M scripts/build.ps1 Log Message: ----------- fix: missing sphinx on windows build Commit: 300852b8d51c2733817729fab46d6d0e68f5e717 https://github.com/ehb54/ultrascan3/commit/300852b8d51c2733817729fab46d6d0e68f5e717 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-05 (Thu, 05 Mar 2026) Changed paths: R README.linguist M etc/etc_belongs_list.txt R etc/us3-GMP-icon-128x128.ico M etc/us3-GMP-icon-128x128.png R etc/us3-GMP-icon-128x128.xpm R etc/us3-GMP-icon-32x32.ico R etc/us3-GMP-icon-32x32.png R etc/us3-GMP-icon-32x32.xpm R etc/us3-GMP-icon-48x48.ico R etc/us3-GMP-icon-48x48.png R etc/us3-GMP-icon-48x48.xpm M gui/libus_gui.pro M programs/us/us.pro R programs/us/us_de_DE.ts M programs/us_config/us_config.pro R propignore R proppng R proptext R qwtplot3d/lingua_de.ts M utils/libus_utils.pro Log Message: ----------- Merge branch 'main' into lukas/us_crypto_buffer_overflow Commit: 2fcc6637f35ea3ab3c8e1450a06b60932d033f1b https://github.com/ehb54/ultrascan3/commit/2fcc6637f35ea3ab3c8e1450a06b60932d033f1b Author: Saeed Date: 2026-03-05 (Thu, 05 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- us_spectrum: update Commit: 9c62b533654400def76e5db0eb8c8f4924ff66d1 https://github.com/ehb54/ultrascan3/commit/9c62b533654400def76e5db0eb8c8f4924ff66d1 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-05 (Thu, 05 Mar 2026) Changed paths: R README.linguist M etc/etc_belongs_list.txt R etc/us3-GMP-icon-128x128.ico M etc/us3-GMP-icon-128x128.png R etc/us3-GMP-icon-128x128.xpm R etc/us3-GMP-icon-32x32.ico R etc/us3-GMP-icon-32x32.png R etc/us3-GMP-icon-32x32.xpm R etc/us3-GMP-icon-48x48.ico R etc/us3-GMP-icon-48x48.png R etc/us3-GMP-icon-48x48.xpm M gui/libus_gui.pro M gui/us_spectrodata.h M programs/us/us.pro R programs/us/us_de_DE.ts M programs/us_config/us_config.pro M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_ddist_combine/us_ddist_combine.h M programs/us_ga_init/us_ga_init.cpp M programs/us_ga_init/us_ga_init.h M programs/us_ga_init/us_solutedata.cpp M programs/us_integral/us_integral.cpp M programs/us_integral/us_integral.h M programs/us_modelmetrics/us_modelmetrics.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.h R propignore R proppng R proptext R qwtplot3d/lingua_de.ts M utils/libus_utils.pro Log Message: ----------- Merge pull request #383 from ehb54/main Update feature branch to main Commit: 0f7d005ceda3b8031c1180200237d736f60a1b4c https://github.com/ehb54/ultrascan3/commit/0f7d005ceda3b8031c1180200237d736f60a1b4c Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-05 (Thu, 05 Mar 2026) Changed paths: M test/utils/test_us_crypto.cpp M utils/us_crypto.cpp M utils/us_crypto.h Log Message: ----------- Merge pull request #379 from ehb54/lukas/us_crypto_buffer_overflow us_crypto: Avoid buffer overflow, support longer passwords, introduce safer encryption Commit: 780dac6301b72554362f7cc2944a17a6c64d2aa5 https://github.com/ehb54/ultrascan3/commit/780dac6301b72554362f7cc2944a17a6c64d2aa5 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-03-05 (Thu, 05 Mar 2026) Changed paths: M utils/us_astfem_math.cpp Log Message: ----------- Refactor `US_AstfemMath`: improve low acceleration rate handling by adding corrections for slow experiments and original `timestate` checks. Commit: 01be09bde2a7cc42512e4a4f215108a9419c0d32 https://github.com/ehb54/ultrascan3/commit/01be09bde2a7cc42512e4a4f215108a9419c0d32 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-03-05 (Thu, 05 Mar 2026) Changed paths: M gui/us_convert_gui.h Log Message: ----------- Add `prepareTimeState` method and integrate `US_TimeState` into `US_ConvertGui` Commit: e0424b860fb5077ab33b7e5db663b721da5ba290 https://github.com/ehb54/ultrascan3/commit/e0424b860fb5077ab33b7e5db663b721da5ba290 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-03-05 (Thu, 05 Mar 2026) Changed paths: M gui/us_convert_gui.cpp Log Message: ----------- Refactor `US_ConvertGui`: implement `prepareTimeState` for streamlined time state preparation and integrate into speed step processing logic. Commit: 97b756dde416093dc9c7bb730c4958161c0e0232 https://github.com/ehb54/ultrascan3/commit/97b756dde416093dc9c7bb730c4958161c0e0232 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-05 (Thu, 05 Mar 2026) Changed paths: M test/utils/test_us_crypto.cpp M utils/us_crypto.cpp M utils/us_crypto.h Log Message: ----------- Merge branch 'main' into lukas/timestate Commit: b2c2afd33a8ed941e547021628bcb32abea1675a https://github.com/ehb54/ultrascan3/commit/b2c2afd33a8ed941e547021628bcb32abea1675a Author: emre brookes Date: 2026-03-05 (Thu, 05 Mar 2026) Changed paths: R README.linguist M etc/etc_belongs_list.txt R etc/us3-GMP-icon-128x128.ico M etc/us3-GMP-icon-128x128.png R etc/us3-GMP-icon-128x128.xpm R etc/us3-GMP-icon-32x32.ico R etc/us3-GMP-icon-32x32.png R etc/us3-GMP-icon-32x32.xpm R etc/us3-GMP-icon-48x48.ico R etc/us3-GMP-icon-48x48.png R etc/us3-GMP-icon-48x48.xpm M gui/libus_gui.pro M programs/us/us.pro R programs/us/us_de_DE.ts M programs/us_config/us_config.pro R propignore R proppng R proptext R qwtplot3d/lingua_de.ts M test/utils/test_us_crypto.cpp M utils/libus_utils.pro M utils/us_crypto.cpp M utils/us_crypto.h Log Message: ----------- Merge branch 'main' into ehb54-issue-670 Commit: ea9b77b204f53d6694d97541134564d0606916a3 https://github.com/ehb54/ultrascan3/commit/ea9b77b204f53d6694d97541134564d0606916a3 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-03-05 (Thu, 05 Mar 2026) Changed paths: M gui/us_convert_gui.cpp Log Message: ----------- Refactor `US_ConvertGui`: streamline file handling logic in time state preparation and enable GUI button state based on file existence. Commit: 11fa3a30cb824bce1c32920aa3a6b2c307f54f1a https://github.com/ehb54/ultrascan3/commit/11fa3a30cb824bce1c32920aa3a6b2c307f54f1a Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-03-05 (Thu, 05 Mar 2026) Changed paths: M utils/us_astfem_math.cpp Log Message: ----------- Refactor `US_AstfemMath`: replace `qDebug` with `DbgLv` for consistent debug logging. Commit: 5eb4adb03f6cf6e0ab2a6163a5d614d3b034d383 https://github.com/ehb54/ultrascan3/commit/5eb4adb03f6cf6e0ab2a6163a5d614d3b034d383 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-03-05 (Thu, 05 Mar 2026) Changed paths: M test/utils/test_us_time_state.cpp Log Message: ----------- Update `test_us_time_state`: adjust expected version to `2.2` in origin test. Commit: 41a6910c567f5d60a14f6a802af0a1134eef03c4 https://github.com/ehb54/ultrascan3/commit/41a6910c567f5d60a14f6a802af0a1134eef03c4 Author: Saeed Date: 2026-03-05 (Thu, 05 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- add argsort and sort functions Commit: bc8f22c93dcad653e16c52717a9386d9a99c67c9 https://github.com/ehb54/ultrascan3/commit/bc8f22c93dcad653e16c52717a9386d9a99c67c9 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-05 (Thu, 05 Mar 2026) Changed paths: M programs/us_config/us_admin.cpp Log Message: ----------- Refactor password re-encryption logic Commit: 93b2e5a2535f0de5b6fe2b4384a60d509571f6d4 https://github.com/ehb54/ultrascan3/commit/93b2e5a2535f0de5b6fe2b4384a60d509571f6d4 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-05 (Thu, 05 Mar 2026) Changed paths: M programs/us_config/us_admin.cpp Log Message: ----------- Check for empty cipherHex and optimize database loop Added a check for empty cipherHex before decryption and modified the database loop to use a reference. 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doc/manual/source/run_details.rst M doc/manual/source/sassoc.rst M doc/manual/source/second_moment.rst M doc/manual/source/simparams.rst M doc/manual/source/solutions/index.rst M doc/manual/source/solutions/solution_edit.rst M doc/manual/source/solutions/solution_new.rst M doc/manual/source/solutions/solution_select.rst M doc/manual/source/solutions/solution_settings.rst M doc/manual/source/temp.txt M doc/manual/source/time_derivative.rst M doc/manual/source/tmst_viewer.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_equiltime.rst M doc/manual/source/us_extinction.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/us_investigator.rst M doc/manual/source/us_modelmetrics.rst M doc/manual/source/us_project.rst M doc/manual/source/us_spectrum.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_distrib_plot.rst M doc/manual/source/vhw_enhanced.rst M doc/manual/source/xpn_viewer.rst Log Message: ----------- fix: change qthelp url to use manual instead of doc, use right project structure for images and update links Commit: dd6f8d6767fa98ae4f35d21e7e5411f7f1f1eb17 https://github.com/ehb54/ultrascan3/commit/dd6f8d6767fa98ae4f35d21e7e5411f7f1f1eb17 Author: Saeed Date: 2026-03-06 (Fri, 06 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- use Microsoft format, add overlap function Commit: e9f9ae1d960fb6e262803ee6b522247b68cf8894 https://github.com/ehb54/ultrascan3/commit/e9f9ae1d960fb6e262803ee6b522247b68cf8894 Author: Saeed Date: 2026-03-06 (Fri, 06 Mar 2026) Changed paths: R README.linguist M etc/etc_belongs_list.txt R etc/us3-GMP-icon-128x128.ico M etc/us3-GMP-icon-128x128.png R etc/us3-GMP-icon-128x128.xpm R etc/us3-GMP-icon-32x32.ico R etc/us3-GMP-icon-32x32.png R etc/us3-GMP-icon-32x32.xpm R etc/us3-GMP-icon-48x48.ico R etc/us3-GMP-icon-48x48.png R etc/us3-GMP-icon-48x48.xpm M gui/libus_gui.pro M gui/us_spectrodata.h M programs/us/us.pro R programs/us/us_de_DE.ts M programs/us_config/us_config.pro M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_ddist_combine/us_ddist_combine.h M programs/us_ga_init/us_ga_init.cpp M programs/us_ga_init/us_ga_init.h M programs/us_ga_init/us_solutedata.cpp M programs/us_integral/us_integral.cpp M programs/us_integral/us_integral.h M programs/us_modelmetrics/us_modelmetrics.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.h R propignore R proppng R proptext R qwtplot3d/lingua_de.ts M test/utils/test_us_crypto.cpp M utils/libus_utils.pro M utils/us_crypto.cpp M utils/us_crypto.h Log Message: ----------- Merge remote-tracking branch 'upstream/main' into ticket_747 Commit: b33c9b1cddd853e103542e10c4328830fc59e944 https://github.com/ehb54/ultrascan3/commit/b33c9b1cddd853e103542e10c4328830fc59e944 Author: aaron-auc Date: 2026-03-06 (Fri, 06 Mar 2026) Changed paths: A admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake M admin/cmake/packaging/windows/WinDeploy.cmake A admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake M doc/manual/CMakeLists.txt R doc/manual/StageAssistant.cmake M programs/us/CMakeLists.txt M scripts/build.ps1 M scripts/build.sh Log Message: ----------- mod: windows and macos qt assistant fix Commit: adb74a9f1e5a1e238c264228544137f56a4125b5 https://github.com/ehb54/ultrascan3/commit/adb74a9f1e5a1e238c264228544137f56a4125b5 Author: aaron-auc Date: 2026-03-06 (Fri, 06 Mar 2026) Changed paths: M scripts/build.ps1 Log Message: ----------- fix: builddir set at the beginning Commit: cea2ea0e77baf6dbcc9097b3062ede36ca70f800 https://github.com/ehb54/ultrascan3/commit/cea2ea0e77baf6dbcc9097b3062ede36ca70f800 Author: aaron-auc Date: 2026-03-06 (Fri, 06 Mar 2026) Changed paths: M CMakeLists.txt M doc/manual/CMakeLists.txt M scripts/build.ps1 Log Message: ----------- fix: windows path issues Commit: 99a443309500f6d44fde4d4ba640770dfadeec24 https://github.com/ehb54/ultrascan3/commit/99a443309500f6d44fde4d4ba640770dfadeec24 Author: aaron-auc Date: 2026-03-06 (Fri, 06 Mar 2026) Changed paths: M admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake M doc/manual/CMakeLists.txt M programs/us/CMakeLists.txt M programs/us_helpdaemon/us_helpdaemon.cpp Log Message: ----------- fix: windows missing dll Commit: 32f3fd93bf886595a3d9b9b0335a74cf5645913a https://github.com/ehb54/ultrascan3/commit/32f3fd93bf886595a3d9b9b0335a74cf5645913a Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M utils/us_xpn_data.cpp Log Message: ----------- Initialize `tsobj` with `TIMESTATE_TYPE::ORIGINAL` in `US_TimeState`. Commit: f6095ff611d0c2f9f6a04567e6f2a74535dd45fd https://github.com/ehb54/ultrascan3/commit/f6095ff611d0c2f9f6a04567e6f2a74535dd45fd Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M utils/us_xpn_data.cpp Log Message: ----------- Initialize `tsobj` with `TIMESTATE_TYPE::ORIGINAL` in `us_xpn_data`. Commit: 399ad6ee7636d4885c37adff02b723d1e6af48c9 https://github.com/ehb54/ultrascan3/commit/399ad6ee7636d4885c37adff02b723d1e6af48c9 Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M CMakeLists.txt A admin/cmake/packaging/linux/LinuxDeploy.cmake A admin/cmake/packaging/linux/LinuxPkg.cmake M scripts/build.sh M utils/CMakeLists.txt Log Message: ----------- add: linux cmake packaging Commit: c3215226c1e826bd7c620115a98fe3694cfe771e https://github.com/ehb54/ultrascan3/commit/c3215226c1e826bd7c620115a98fe3694cfe771e Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M scripts/build.sh M utils/us_memory.cpp Log Message: ----------- fix: cross platform page size Commit: 16d1f75e51f11ad87c8f18b11e0a8a2bb755ea44 https://github.com/ehb54/ultrascan3/commit/16d1f75e51f11ad87c8f18b11e0a8a2bb755ea44 Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M CMakeLists.txt M admin/cmake/packaging/linux/LinuxDeploy.cmake M scripts/build.ps1 M scripts/build.sh M vcpkg.json Log Message: ----------- fix: assistant on linux Commit: 4cff648f9ba827db6e67e9cedb1a93953e8a0f76 https://github.com/ehb54/ultrascan3/commit/4cff648f9ba827db6e67e9cedb1a93953e8a0f76 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M gui/us_convert_gui.cpp M gui/us_convert_gui.h M programs/us_mwl_species_sim/us_mwl_species_sim.cpp M test/utils/test_us_time_state.cpp M utils/us_astfem_math.cpp M utils/us_astfem_math.h M utils/us_cfa_data.cpp M utils/us_time_state.cpp M utils/us_time_state.h M utils/us_xpn_data.cpp Log Message: ----------- Merge pull request #384 from ehb54/lukas/timestate Add TIMESTATE_TYPE and IMPORT_TYPE support with refactorings Commit: 5ab554ce68ae411774740695115c51b480df8c8a https://github.com/ehb54/ultrascan3/commit/5ab554ce68ae411774740695115c51b480df8c8a Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M scripts/build.ps1 M scripts/build.sh Log Message: ----------- fix: vcpkg cache clear Commit: a8b6e9963d8ed447dc737af6b4e3b69c3894945f https://github.com/ehb54/ultrascan3/commit/a8b6e9963d8ed447dc737af6b4e3b69c3894945f Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M scripts/build.ps1 M scripts/build.sh Log Message: ----------- fix: vcpkg cache clear fix Commit: 19f656eb532b2218880402623455153763d66d50 https://github.com/ehb54/ultrascan3/commit/19f656eb532b2218880402623455153763d66d50 Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M CMakeLists.txt Log Message: ----------- fix: assistant now copied to bin on dev build Commit: 75e0dc23de6fbdd330b322115c640d973e916d02 https://github.com/ehb54/ultrascan3/commit/75e0dc23de6fbdd330b322115c640d973e916d02 Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M CMakeLists.txt Log Message: ----------- fix: assistant find update Commit: 57f162e692e1a548bb426454e7e768e6f68b1bc4 https://github.com/ehb54/ultrascan3/commit/57f162e692e1a548bb426454e7e768e6f68b1bc4 Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M CMakeLists.txt M programs/us/us.cpp Log Message: ----------- fix: program path issue Commit: 4700970e14e8ef1bf44b3fe91efd8dbcd15ba544 https://github.com/ehb54/ultrascan3/commit/4700970e14e8ef1bf44b3fe91efd8dbcd15ba544 Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M CMakeLists.txt Log Message: ----------- fix: assistant not found Commit: 14d6c7e63b928fb3a73559fdafa9426502eda98c https://github.com/ehb54/ultrascan3/commit/14d6c7e63b928fb3a73559fdafa9426502eda98c Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M scripts/build.sh Log Message: ----------- fix: guard specific macos required tools Commit: 1c6be4ed0464373db7a5a1a6a780f17bc12dbcf5 https://github.com/ehb54/ultrascan3/commit/1c6be4ed0464373db7a5a1a6a780f17bc12dbcf5 Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M admin/cmake/packaging/linux/LinuxDeploy.cmake Log Message: ----------- fix: missing library in pkg Commit: 216860fe02c9358e021e6a54b84aa2aa0e462a99 https://github.com/ehb54/ultrascan3/commit/216860fe02c9358e021e6a54b84aa2aa0e462a99 Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M scripts/build.sh Log Message: ----------- fix: rcc error Commit: be038ad56e172897c3f18b8a1319fced62a708a0 https://github.com/ehb54/ultrascan3/commit/be038ad56e172897c3f18b8a1319fced62a708a0 Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M CMakeLists.txt M admin/cmake/packaging/linux/LinuxDeploy.cmake Log Message: ----------- fix: update plugin directory Commit: 87c38bbe59db529cf02b7887c7bfe57ebc8e62da https://github.com/ehb54/ultrascan3/commit/87c38bbe59db529cf02b7887c7bfe57ebc8e62da Author: aaron-auc Date: 2026-03-07 (Sat, 07 Mar 2026) Changed paths: M admin/cmake/packaging/linux/LinuxDeploy.cmake Log Message: ----------- add: readme Commit: 75648618e7f79fde451a6e9f2cf9023d8ed19140 https://github.com/ehb54/ultrascan3/commit/75648618e7f79fde451a6e9f2cf9023d8ed19140 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-03-08 (Sun, 08 Mar 2026) Changed paths: M programs/us_pseudo_absorbance/us_convert_scan.cpp M programs/us_pseudo_absorbance/us_convert_scan.h Log Message: ----------- Add `load_timestate` methods to `US_ConvertScan` for handling time state from disk or database. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: fb3e874b186e61a3c3b696be002fa6134d681c4e https://github.com/ehb54/ultrascan3/commit/fb3e874b186e61a3c3b696be002fa6134d681c4e Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-08 (Sun, 08 Mar 2026) Changed paths: M programs/us_pseudo_absorbance/us_convert_scan.cpp M programs/us_pseudo_absorbance/us_convert_scan.h Log Message: ----------- Merge pull request #386 from ehb54/lukas/us_pseudo_absorbance_timestate us_pseudo_absorbance: transfer timestate Commit: f4323bc883bb8996c6e627bfb9b8295063ef176f https://github.com/ehb54/ultrascan3/commit/f4323bc883bb8996c6e627bfb9b8295063ef176f Author: aaron-auc Date: 2026-03-08 (Sun, 08 Mar 2026) Changed paths: M CMakeLists.txt M CMakePresets.json M admin/cmake/GenerateVersion.cmake A admin/cmake/packaging/linux/LinuxHpcDeploy.cmake A admin/cmake/packaging/linux/LinuxHpcPkg.cmake A admin/cmake/packaging/macos/MacHpcDeploy.cmake A admin/cmake/packaging/macos/MacHpcPkg.cmake M programs/CMakeLists.txt M programs/us_mpi_analysis/2dsa_worker.cpp M programs/us_mpi_analysis/CMakeLists.txt M programs/us_mpi_analysis/pcsa_worker.cpp M programs/us_mpi_analysis/us_mpi_analysis.cpp M scripts/build.sh Log Message: ----------- fix: hpc build Commit: c515903ce23bec6067e47ed10ae663518f3de230 https://github.com/ehb54/ultrascan3/commit/c515903ce23bec6067e47ed10ae663518f3de230 Author: aaron-auc Date: 2026-03-08 (Sun, 08 Mar 2026) Changed paths: M scripts/build.ps1 M scripts/build.sh Log Message: ----------- mod: use all cores with CI runners Commit: 7a8a012754d242634bca20501e1a1c94be231d6c https://github.com/ehb54/ultrascan3/commit/7a8a012754d242634bca20501e1a1c94be231d6c Author: aaron-auc Date: 2026-03-08 (Sun, 08 Mar 2026) Changed paths: M CMakePresets.json M scripts/build.ps1 M scripts/build.sh Log Message: ----------- fix: CI runners and hpc build Commit: 5277352caa620430b2bf8a580f9f10d43218d930 https://github.com/ehb54/ultrascan3/commit/5277352caa620430b2bf8a580f9f10d43218d930 Author: aaron-auc Date: 2026-03-08 (Sun, 08 Mar 2026) Changed paths: M scripts/build.sh Log Message: ----------- fix: not all dependencies found Commit: 60b1b16425fcda080aea3bfac20f1abad9e8bc32 https://github.com/ehb54/ultrascan3/commit/60b1b16425fcda080aea3bfac20f1abad9e8bc32 Author: aaron-auc Date: 2026-03-08 (Sun, 08 Mar 2026) Changed paths: M scripts/build.sh Log Message: ----------- fix: dependenies added Commit: 97cbb1a37275a33ef389b6fc7c2132ed4aaf52f4 https://github.com/ehb54/ultrascan3/commit/97cbb1a37275a33ef389b6fc7c2132ed4aaf52f4 Author: Saeed Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- us_spectrum: large updates Commit: 15ea3878148a0987efd94cdedb07b9e3db570cfd https://github.com/ehb54/ultrascan3/commit/15ea3878148a0987efd94cdedb07b9e3db570cfd Author: Saeed Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- finish the fit function Commit: 1c6be507a58b5e30438f1565b772e544ee297d86 https://github.com/ehb54/ultrascan3/commit/1c6be507a58b5e30438f1565b772e544ee297d86 Author: Saeed Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- improve find_lambda function Commit: 3b29d9afdd3d29c7e33af7f0b989ccf1c642bc8c https://github.com/ehb54/ultrascan3/commit/3b29d9afdd3d29c7e33af7f0b989ccf1c642bc8c Author: aaron-auc Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: A scripts/bootstrap-deps.sh A scripts/bootstrap-macos.sh A scripts/bootstrap-windows.ps1 A scripts/bootstrap.bat M scripts/build.ps1 M scripts/build.sh Log Message: ----------- fix: bootstrap deps Commit: 4975707ad3f001539ceeea7d716043118c23d07a https://github.com/ehb54/ultrascan3/commit/4975707ad3f001539ceeea7d716043118c23d07a Author: aaron-auc Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: A buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake A buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json M scripts/bootstrap-deps.sh Log Message: ----------- fix: qt5 tools overlay Commit: e7e0613e5d7d234f835e4e9490416e0a7f5b9803 https://github.com/ehb54/ultrascan3/commit/e7e0613e5d7d234f835e4e9490416e0a7f5b9803 Author: aaron-auc Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: M scripts/bootstrap-deps.sh M scripts/bootstrap-macos.sh M scripts/build.sh A us-build Log Message: ----------- add: bash wrapper Commit: b93b52b3acb64a650854a16f3983473f49becee9 https://github.com/ehb54/ultrascan3/commit/b93b52b3acb64a650854a16f3983473f49becee9 Author: aaron-auc Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: M scripts/build.ps1 Log Message: ----------- mod: make profile positional for powershell Commit: dfec7b06f5af8e9ad31d7b4c682197a103bd5fb1 https://github.com/ehb54/ultrascan3/commit/dfec7b06f5af8e9ad31d7b4c682197a103bd5fb1 Author: aaron-auc Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: M scripts/bootstrap-windows.ps1 M scripts/build.bat Log Message: ----------- fix: convert -- pkg to - pkg for windows Commit: 2f98f90faa5b640815d571359919c09034a266c1 https://github.com/ehb54/ultrascan3/commit/2f98f90faa5b640815d571359919c09034a266c1 Author: aaron-auc Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: M scripts/bootstrap-windows.ps1 Log Message: ----------- fix: getwin Commit: 7249d6b2d508075f65d61b2643639c789db68d8e https://github.com/ehb54/ultrascan3/commit/7249d6b2d508075f65d61b2643639c789db68d8e Author: aaron-auc Date: 2026-03-09 (Mon, 09 Mar 2026) Changed paths: M scripts/bootstrap-windows.ps1 Log Message: ----------- fix: add chocolatey fallback for ci Commit: fd116b43987cda26a351438dcd70082a7c27ce17 https://github.com/ehb54/ultrascan3/commit/fd116b43987cda26a351438dcd70082a7c27ce17 Author: emre brookes Date: 2026-03-10 (Tue, 10 Mar 2026) Changed paths: M gui/us_convert_gui.cpp M gui/us_convert_gui.h M programs/us_mwl_species_sim/us_mwl_species_sim.cpp M programs/us_pseudo_absorbance/us_convert_scan.cpp M programs/us_pseudo_absorbance/us_convert_scan.h M test/utils/test_us_time_state.cpp M utils/us_astfem_math.cpp M utils/us_astfem_math.h M utils/us_cfa_data.cpp M utils/us_time_state.cpp M utils/us_time_state.h M utils/us_xpn_data.cpp Log Message: ----------- Merge branch 'main' into ehb54-issue-670 Commit: 12ffcd24c66797e3e2d49303bce6232cc9c13d7c https://github.com/ehb54/ultrascan3/commit/12ffcd24c66797e3e2d49303bce6232cc9c13d7c Author: Saeed Date: 2026-03-10 (Tue, 10 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- us_spectrum: finilized the widget Commit: 21473e24e6f59d7d4edaba9f4ea29e1174a8f579 https://github.com/ehb54/ultrascan3/commit/21473e24e6f59d7d4edaba9f4ea29e1174a8f579 Author: Saeed Date: 2026-03-10 (Tue, 10 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp Log Message: ----------- reformat some lines Commit: 55d03f81788bc585236ce0b642d89abc3293ad3a https://github.com/ehb54/ultrascan3/commit/55d03f81788bc585236ce0b642d89abc3293ad3a Author: Saeed Date: 2026-03-10 (Tue, 10 Mar 2026) Changed paths: R README.linguist M etc/etc_belongs_list.txt R etc/us3-GMP-icon-128x128.ico M etc/us3-GMP-icon-128x128.png R etc/us3-GMP-icon-128x128.xpm R etc/us3-GMP-icon-32x32.ico R etc/us3-GMP-icon-32x32.png R etc/us3-GMP-icon-32x32.xpm R etc/us3-GMP-icon-48x48.ico R etc/us3-GMP-icon-48x48.png R etc/us3-GMP-icon-48x48.xpm M gui/libus_gui.pro M gui/us_convert_gui.cpp M gui/us_convert_gui.h M programs/us/us.pro R programs/us/us_de_DE.ts M programs/us_config/us_config.pro M programs/us_mwl_species_sim/us_mwl_species_sim.cpp M programs/us_pseudo_absorbance/us_convert_scan.cpp M programs/us_pseudo_absorbance/us_convert_scan.h R propignore R proppng R proptext R qwtplot3d/lingua_de.ts M test/utils/test_us_crypto.cpp M test/utils/test_us_time_state.cpp M utils/libus_utils.pro M utils/us_astfem_math.cpp M utils/us_astfem_math.h M utils/us_cfa_data.cpp M utils/us_crypto.cpp M utils/us_crypto.h M utils/us_time_state.cpp M utils/us_time_state.h M utils/us_xpn_data.cpp Log Message: ----------- Merge remote-tracking branch 'upstream/main' into ticket_748 Commit: c3dd2ab6d66893c243fe40ba02010696a7b78d52 https://github.com/ehb54/ultrascan3/commit/c3dd2ab6d66893c243fe40ba02010696a7b78d52 Author: Saeed Date: 2026-03-10 (Tue, 10 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.h Log Message: ----------- reformat comments Commit: 74f3ba1cd3b6646dce0b4638c98b2707dff60f2e https://github.com/ehb54/ultrascan3/commit/74f3ba1cd3b6646dce0b4638c98b2707dff60f2e Author: Saeed Date: 2026-03-10 (Tue, 10 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.h Log Message: ----------- us_spectrum.h: removed us_math2.h Commit: 1dbeb030075307c5652d506be95a2186a0c22724 https://github.com/ehb54/ultrascan3/commit/1dbeb030075307c5652d506be95a2186a0c22724 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h Log Message: ----------- Refactor `US_Plot`: enhance double-click interactions, add zoom configuration, and improve curve/axis management with event filter. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 72c834e6d8fa6d6cd9d3b1d1eb90cc7410670c01 https://github.com/ehb54/ultrascan3/commit/72c834e6d8fa6d6cd9d3b1d1eb90cc7410670c01 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h Log Message: ----------- Add "Click Exclusion Mode" in `US_Edit` with hover tooltips and enhanced scan selection functionality. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: ced5c0cf9086f5a21a308bcb214f061a75e89aab https://github.com/ehb54/ultrascan3/commit/ced5c0cf9086f5a21a308bcb214f061a75e89aab Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- Add null pointer check for `plot->getZoomer()` in `US_Edit` to prevent potential crashes. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: b5607cb3d6296c0e48283cc6dd1a804c051dd8d9 https://github.com/ehb54/ultrascan3/commit/b5607cb3d6296c0e48283cc6dd1a804c051dd8d9 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- Remove redundant state machine changes in "Click Exclusion Mode" toggle of `US_Edit`. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: d548b54d3bbac75ffbf270b99643e5cf26257968 https://github.com/ehb54/ultrascan3/commit/d548b54d3bbac75ffbf270b99643e5cf26257968 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M gui/us_plot.h Log Message: ----------- Initialize members in `CurveDistance` struct with default values to improve stability and prevent undefined behavior. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: f3e23f8189d66b9641b37fb2c54b38119d2ef2ec https://github.com/ehb54/ultrascan3/commit/f3e23f8189d66b9641b37fb2c54b38119d2ef2ec Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M gui/us_plot.cpp Log Message: ----------- Refactor `US_Plot`: add new double-click connections, refactor axis configuration, and enhance zoomer signal handling. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: d73cc2971816653d17d72f1785291c00b96b0c8b https://github.com/ehb54/ultrascan3/commit/d73cc2971816653d17d72f1785291c00b96b0c8b Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M gui/us_plot.cpp Log Message: ----------- Update `US_Plot::createZoomer` to adjust `US_Zoomer` constructor arguments for axis configuration. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 45140eeddd64e45d6b5c87061f79c9aefc3ce25e https://github.com/ehb54/ultrascan3/commit/45140eeddd64e45d6b5c87061f79c9aefc3ce25e Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json M programs/us/revision.sh M scripts/build.ps1 Log Message: ----------- fix: windows CI vcpkg cache usage Commit: 1ec6ec52d283b6c710abe095ebcad82139a64ae3 https://github.com/ehb54/ultrascan3/commit/1ec6ec52d283b6c710abe095ebcad82139a64ae3 Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M CMakePresets.json M scripts/build.sh Log Message: ----------- add: macos intel build Commit: 39ad33c5c781b0f007822456803df7d591795fe7 https://github.com/ehb54/ultrascan3/commit/39ad33c5c781b0f007822456803df7d591795fe7 Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M scripts/build.ps1 Log Message: ----------- fix: vcpkg CI handling Commit: 7fad3a4dfaa187ad4eb94554cedbe3ec6cf56773 https://github.com/ehb54/ultrascan3/commit/7fad3a4dfaa187ad4eb94554cedbe3ec6cf56773 Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M programs/us_mpi_analysis/revision.sh Log Message: ----------- fix: change revision to git_revision to be consistent with other programs Commit: b4417a6bfd0cfcc840668d21e88718e957734e47 https://github.com/ehb54/ultrascan3/commit/b4417a6bfd0cfcc840668d21e88718e957734e47 Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: R README.linguist M etc/etc_belongs_list.txt R etc/us3-GMP-icon-128x128.ico M etc/us3-GMP-icon-128x128.png R etc/us3-GMP-icon-128x128.xpm R etc/us3-GMP-icon-32x32.ico R etc/us3-GMP-icon-32x32.png R etc/us3-GMP-icon-32x32.xpm R etc/us3-GMP-icon-48x48.ico R etc/us3-GMP-icon-48x48.png R etc/us3-GMP-icon-48x48.xpm M gui/libus_gui.pro M gui/us_convert_gui.cpp M gui/us_convert_gui.h M programs/us/us.pro R programs/us/us_de_DE.ts M programs/us_config/us_config.pro M programs/us_mwl_species_sim/us_mwl_species_sim.cpp M programs/us_pseudo_absorbance/us_convert_scan.cpp M programs/us_pseudo_absorbance/us_convert_scan.h R propignore R proppng R proptext R qwtplot3d/lingua_de.ts M test/utils/test_us_crypto.cpp M test/utils/test_us_time_state.cpp M utils/libus_utils.pro M utils/us_astfem_math.cpp M utils/us_astfem_math.h M utils/us_cfa_data.cpp M utils/us_crypto.cpp M utils/us_crypto.h M utils/us_time_state.cpp M utils/us_time_state.h M utils/us_xpn_data.cpp Log Message: ----------- Merge branch 'main' into 527-enhancement-sphinx-migration-2 Commit: f0c8ede548bfb3a6f2380059dd1aacf09c6a7883 https://github.com/ehb54/ultrascan3/commit/f0c8ede548bfb3a6f2380059dd1aacf09c6a7883 Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M scripts/bootstrap-macos.sh Log Message: ----------- fix: add missing dependencies Commit: 09eeb4bec49931c943f732f024f1166b882c3e3a https://github.com/ehb54/ultrascan3/commit/09eeb4bec49931c943f732f024f1166b882c3e3a Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: R README.linguist M etc/etc_belongs_list.txt R etc/us3-GMP-icon-128x128.ico M etc/us3-GMP-icon-128x128.png R etc/us3-GMP-icon-128x128.xpm R etc/us3-GMP-icon-32x32.ico R etc/us3-GMP-icon-32x32.png R etc/us3-GMP-icon-32x32.xpm R etc/us3-GMP-icon-48x48.ico R etc/us3-GMP-icon-48x48.png R etc/us3-GMP-icon-48x48.xpm M gui/libus_gui.pro M gui/us_convert_gui.cpp M gui/us_convert_gui.h M programs/us/us.pro R programs/us/us_de_DE.ts M programs/us_config/us_config.pro M programs/us_mwl_species_sim/us_mwl_species_sim.cpp M programs/us_pseudo_absorbance/us_convert_scan.cpp M programs/us_pseudo_absorbance/us_convert_scan.h R propignore R proppng R proptext R qwtplot3d/lingua_de.ts M test/utils/test_us_crypto.cpp M test/utils/test_us_time_state.cpp M utils/libus_utils.pro M utils/us_astfem_math.cpp M utils/us_astfem_math.h M utils/us_cfa_data.cpp M utils/us_crypto.cpp M utils/us_crypto.h M utils/us_time_state.cpp M utils/us_time_state.h M utils/us_xpn_data.cpp Log Message: ----------- Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2 Commit: 51ba58286eaaa41af877ff9330d19560633e1c16 https://github.com/ehb54/ultrascan3/commit/51ba58286eaaa41af877ff9330d19560633e1c16 Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M scripts/bootstrap-macos.sh Log Message: ----------- fix: add missing dependencies Commit: 21a5f4a7ad52a67040b9426ed30a082038813498 https://github.com/ehb54/ultrascan3/commit/21a5f4a7ad52a67040b9426ed30a082038813498 Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M scripts/build.sh Log Message: ----------- mod: reduce linux disk space usage Commit: 12b7e30a17e5c86f8e9d4960f7e8da86d67b3b4f https://github.com/ehb54/ultrascan3/commit/12b7e30a17e5c86f8e9d4960f7e8da86d67b3b4f Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M scripts/build.sh Log Message: ----------- mod: removed vcpkg folder creation Commit: ece15a944fb55077213717e00f084056004367a7 https://github.com/ehb54/ultrascan3/commit/ece15a944fb55077213717e00f084056004367a7 Author: aaron-auc Date: 2026-03-11 (Wed, 11 Mar 2026) Changed paths: M admin/cmake/packaging/windows/WinDeploy.cmake Log Message: ----------- mod: change qt warnings an error to force build to stop Commit: 466789a804273570c11c7cb44bf28924caa363df https://github.com/ehb54/ultrascan3/commit/466789a804273570c11c7cb44bf28924caa363df Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-12 (Thu, 12 Mar 2026) Changed paths: M gui/us_convert_gui.cpp M gui/us_convert_gui.h M programs/us_mwl_species_sim/us_mwl_species_sim.cpp M programs/us_pseudo_absorbance/us_convert_scan.cpp M programs/us_pseudo_absorbance/us_convert_scan.h M test/utils/test_us_time_state.cpp M utils/us_astfem_math.cpp M utils/us_astfem_math.h M utils/us_cfa_data.cpp M utils/us_time_state.cpp M utils/us_time_state.h M utils/us_xpn_data.cpp Log Message: ----------- Merge branch 'main' into lukas/masterpassword_change Commit: 80474c759ff865d72c8c6043ba64d38bf98e1e15 https://github.com/ehb54/ultrascan3/commit/80474c759ff865d72c8c6043ba64d38bf98e1e15 Author: aaron-auc Date: 2026-03-12 (Thu, 12 Mar 2026) Changed paths: M scripts/build.sh Log Message: ----------- mod: reduce to 2 cores for ubuntu Commit: ae52535acb54fede063aaaefd18be0c4ec92474b https://github.com/ehb54/ultrascan3/commit/ae52535acb54fede063aaaefd18be0c4ec92474b Author: Saeed Date: 2026-03-12 (Thu, 12 Mar 2026) Changed paths: M gui/us_convert_gui.cpp M gui/us_convert_gui.h M programs/us_mwl_species_sim/us_mwl_species_sim.cpp M programs/us_pseudo_absorbance/us_convert_scan.cpp M programs/us_pseudo_absorbance/us_convert_scan.h M test/utils/test_us_time_state.cpp M utils/us_astfem_math.cpp M utils/us_astfem_math.h M utils/us_cfa_data.cpp M utils/us_time_state.cpp M utils/us_time_state.h M utils/us_xpn_data.cpp Log Message: ----------- Merge remote-tracking branch 'upstream/main' into ticket_747 Commit: 2e81015b2e85d24c6d0619f563c9053fcb5de9e1 https://github.com/ehb54/ultrascan3/commit/2e81015b2e85d24c6d0619f563c9053fcb5de9e1 Author: Saeed Mortezazadeh <49119048+samo38 at users.noreply.github.com> Date: 2026-03-12 (Thu, 12 Mar 2026) Changed paths: M gui/us_extinction_gui.cpp M gui/us_extinction_gui.h M programs/us_legacy_converter/us_legacy_converter.cpp M programs/us_legacy_converter/us_legacy_converter.h M programs/us_query_rmsd/us_query_rmsd.cpp M programs/us_query_rmsd/us_query_rmsd.h M programs/us_ramp/us_ramp_gui.h M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- Merge pull request #373 from samo38/ticket_747 Ticket 747: add US_Help to us_legacy_converter, us_query_rmsd, us_extinction, us_spectrum, us_ramp Commit: e9f0952dea5d8bb82a866082b546997a3e457ec4 https://github.com/ehb54/ultrascan3/commit/e9f0952dea5d8bb82a866082b546997a3e457ec4 Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-12 (Thu, 12 Mar 2026) Changed paths: M gui/us_extinction_gui.cpp M gui/us_extinction_gui.h M programs/us_legacy_converter/us_legacy_converter.cpp M programs/us_legacy_converter/us_legacy_converter.h M programs/us_query_rmsd/us_query_rmsd.cpp M programs/us_query_rmsd/us_query_rmsd.h M programs/us_ramp/us_ramp_gui.h M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- Merge branch 'main' into ehb54-issue-670 Commit: c4af75ba6a8e299d819034f87528f9d6997e469f https://github.com/ehb54/ultrascan3/commit/c4af75ba6a8e299d819034f87528f9d6997e469f Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-12 (Thu, 12 Mar 2026) Changed paths: M gui/us_extinction_gui.cpp M gui/us_extinction_gui.h M programs/us_legacy_converter/us_legacy_converter.cpp M programs/us_legacy_converter/us_legacy_converter.h M programs/us_query_rmsd/us_query_rmsd.cpp M programs/us_query_rmsd/us_query_rmsd.h M programs/us_ramp/us_ramp_gui.h M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- Merge branch 'main' into 527-enhancement-sphinx-migration-2 Commit: 0f81d3f0d1fb567b1e570ed90147a17f49e57c1f https://github.com/ehb54/ultrascan3/commit/0f81d3f0d1fb567b1e570ed90147a17f49e57c1f Author: aaron-auc Date: 2026-03-12 (Thu, 12 Mar 2026) Changed paths: M CMakeLists.txt M CMakePresets.json M admin/cmake/packaging/windows/WinDeploy.cmake R scripts/bootstrap-deps.sh A scripts/bootstrap-linux.sh M scripts/bootstrap-macos.sh M scripts/build.sh M utils/CMakeLists.txt M vcpkg.json Log Message: ----------- mod: move checks to bootstrap Commit: 4ff50388194860753c3e8bc4d697e944ce0f1641 https://github.com/ehb54/ultrascan3/commit/4ff50388194860753c3e8bc4d697e944ce0f1641 Author: aaron-auc Date: 2026-03-12 (Thu, 12 Mar 2026) Changed paths: M gui/us_extinction_gui.cpp M gui/us_extinction_gui.h M programs/us_legacy_converter/us_legacy_converter.cpp M programs/us_legacy_converter/us_legacy_converter.h M programs/us_query_rmsd/us_query_rmsd.cpp M programs/us_query_rmsd/us_query_rmsd.h M programs/us_ramp/us_ramp_gui.h M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2 Commit: 73d3d9961c360d61b70b25d54f762c7f7435325e https://github.com/ehb54/ultrascan3/commit/73d3d9961c360d61b70b25d54f762c7f7435325e Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-13 (Fri, 13 Mar 2026) Changed paths: M gui/us_extinction_gui.cpp M gui/us_extinction_gui.h M programs/us_legacy_converter/us_legacy_converter.cpp M programs/us_legacy_converter/us_legacy_converter.h M programs/us_query_rmsd/us_query_rmsd.cpp M programs/us_query_rmsd/us_query_rmsd.h M programs/us_ramp/us_ramp_gui.h M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- Merge branch 'main' into lukas/masterpassword_change Commit: a54f8e2bc39c26f3e2f95dae43da15eb743e4d25 https://github.com/ehb54/ultrascan3/commit/a54f8e2bc39c26f3e2f95dae43da15eb743e4d25 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-13 (Fri, 13 Mar 2026) Changed paths: M gui/us_extinction_gui.cpp M gui/us_extinction_gui.h M programs/us_legacy_converter/us_legacy_converter.cpp M programs/us_legacy_converter/us_legacy_converter.h M programs/us_query_rmsd/us_query_rmsd.cpp M programs/us_query_rmsd/us_query_rmsd.h M programs/us_ramp/us_ramp_gui.h M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- Merge branch 'main' into lukas/us_edit_scan_exclude_click Commit: 82349a16124679984a45c562feb3f2583dbdb531 https://github.com/ehb54/ultrascan3/commit/82349a16124679984a45c562feb3f2583dbdb531 Author: aaron-auc Date: 2026-03-13 (Fri, 13 Mar 2026) Changed paths: M scripts/build.sh Log Message: ----------- mod: add platform safe check Commit: 8fbf539a26017728861e732dc1d18eb23eb5767b https://github.com/ehb54/ultrascan3/commit/8fbf539a26017728861e732dc1d18eb23eb5767b Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-13 (Fri, 13 Mar 2026) Changed paths: M programs/CMakeLists.txt Log Message: ----------- Include OpenSSL applink for MSVC on Windows Add OpenSSL applink shim for MSVC on Windows. Commit: 062c3d2366cc1939df31abf0a90ee9aa81093ffe https://github.com/ehb54/ultrascan3/commit/062c3d2366cc1939df31abf0a90ee9aa81093ffe Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-13 (Fri, 13 Mar 2026) Changed paths: M utils/us_timer.h Log Message: ----------- Replace 'using namespace std' with std:: in us_timer.h Prevent windows specific type definition conflicts caused by using namespace std; Commit: d285dea10ab7bcc93c14b4f74e336121a728f25a https://github.com/ehb54/ultrascan3/commit/d285dea10ab7bcc93c14b4f74e336121a728f25a Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-13 (Fri, 13 Mar 2026) Changed paths: M vcpkg.json Log Message: ----------- Update builtin-baseline version in vcpkg.json Commit: 2528e2d95ef721c90585880700173e01e85eaa41 https://github.com/ehb54/ultrascan3/commit/2528e2d95ef721c90585880700173e01e85eaa41 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M programs/us/CMakeLists.txt Log Message: ----------- Enhance CMakeLists for Qt6 post-build handling Added post-build commands for Qt6 integration in Debug and Release modes. Commit: 52e46a6c204f209f206de1b17187485510b50872 https://github.com/ehb54/ultrascan3/commit/52e46a6c204f209f206de1b17187485510b50872 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M programs/us/CMakeLists.txt Log Message: ----------- Refactor post-build commands for Qt6 on Windows Commit: 428287d058712bdf7736b86456a19b29730bec50 https://github.com/ehb54/ultrascan3/commit/428287d058712bdf7736b86456a19b29730bec50 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M utils/us_timer.h Log Message: ----------- Add map include to us_timer.h Commit: b1e9456925a223045bd903ef52c4096e0e3675dc https://github.com/ehb54/ultrascan3/commit/b1e9456925a223045bd903ef52c4096e0e3675dc Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M programs/CMakeLists.txt Log Message: ----------- Add OpenSSL applink condition for MSVC on Windows Commit: 844f0378f9d93d9976788b58bd853ff5baafd865 https://github.com/ehb54/ultrascan3/commit/844f0378f9d93d9976788b58bd853ff5baafd865 Author: alexsav815 Date: 2026-03-13 (Fri, 13 Mar 2026) Changed paths: M programs/us_analysis_profile/us_anapro_utils.cpp M programs/us_reporter_gmp/us_reporter_gmp.cpp Log Message: ----------- GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report... Commit: ef226636cf28fac5f0b62c8cc7535c518336f7cd https://github.com/ehb54/ultrascan3/commit/ef226636cf28fac5f0b62c8cc7535c518336f7cd Author: alexsav815 Date: 2026-03-13 (Fri, 13 Mar 2026) Changed paths: M programs/us_analysis_profile/us_anapro_utils.cpp Log Message: ----------- [1]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report... Commit: 008ab8725529f70ff36e4845202c893ddb0e4213 https://github.com/ehb54/ultrascan3/commit/008ab8725529f70ff36e4845202c893ddb0e4213 Author: alexsav815 Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M programs/us_analysis_profile/us_anapro_utils.cpp Log Message: ----------- [2]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report... Commit: cee06353e7b931a3f580d1bffbeb9f2326d63532 https://github.com/ehb54/ultrascan3/commit/cee06353e7b931a3f580d1bffbeb9f2326d63532 Author: alexsav815 Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M programs/us_analysis_profile/us_anapro_utils.cpp Log Message: ----------- [3]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report... Commit: d9676faa3a7a6a92c56faa175bcd24c240a39b0d https://github.com/ehb54/ultrascan3/commit/d9676faa3a7a6a92c56faa175bcd24c240a39b0d Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M programs/CMakeLists.txt M programs/us/CMakeLists.txt M utils/us_timer.h M vcpkg.json Log Message: ----------- Merge pull request #389 from ehb54/lukas/qt6-msvc CMake Qt6 windows compile MSVC Commit: 5c16c03541cbbc99e4d1d5e6304244b7c5cd261d https://github.com/ehb54/ultrascan3/commit/5c16c03541cbbc99e4d1d5e6304244b7c5cd261d Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M programs/CMakeLists.txt M programs/us/CMakeLists.txt M utils/us_timer.h M vcpkg.json Log Message: ----------- Merge branch 'main' into lukas/masterpassword_change Commit: ffaae2039c0f2f0337ba9cde3e4667ade9f04c5c https://github.com/ehb54/ultrascan3/commit/ffaae2039c0f2f0337ba9cde3e4667ade9f04c5c Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M programs/CMakeLists.txt M programs/us/CMakeLists.txt M utils/us_timer.h M vcpkg.json Log Message: ----------- Merge branch 'main' into lukas/us_edit_scan_exclude_click Commit: 5d9bc472d7f67b7cc2de87cfa943d8db9b3bc1c5 https://github.com/ehb54/ultrascan3/commit/5d9bc472d7f67b7cc2de87cfa943d8db9b3bc1c5 Author: alexsav815 Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M programs/us_analysis_profile/us_anapro_utils.cpp Log Message: ----------- [4]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report... Commit: f403e0ca772e609f1f064e09815e424e676e96ba https://github.com/ehb54/ultrascan3/commit/f403e0ca772e609f1f064e09815e424e676e96ba Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M programs/us_ddist_combine/us_ddist_combine.cpp Log Message: ----------- Fix methodChanged to suppress signal and reset checkboxes Commit: 4c67ee8e4cb27a2a60a41177608c3cf2565db76a https://github.com/ehb54/ultrascan3/commit/4c67ee8e4cb27a2a60a41177608c3cf2565db76a Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M gui/us_plot3d.cpp Log Message: ----------- Remove redundant assignment to tdata Prevent memory corruption Commit: 6437b90d6e57f06e5aafbea01753415627877e6b https://github.com/ehb54/ultrascan3/commit/6437b90d6e57f06e5aafbea01753415627877e6b Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M gui/us_analyte_gui.cpp Log Message: ----------- Update condition for vbar20 comparison Commit: 4c73a0c1ae974bfad85180a15588c4203f772bae https://github.com/ehb54/ultrascan3/commit/4c73a0c1ae974bfad85180a15588c4203f772bae Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M programs/us_ddist_combine/us_ddist_combine.cpp Log Message: ----------- Fix typo in comment and streamline methodChanged Commit: 24cd6bc5d78c14e84c05915d5b043c7628d0c084 https://github.com/ehb54/ultrascan3/commit/24cd6bc5d78c14e84c05915d5b043c7628d0c084 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M gui/us_plot3d.cpp Log Message: ----------- Merge pull request #391 from ehb54/lukas/us_mwl_spectra_3dplot_reversey Remove redundant assignment to tdata Commit: cd22d118497ba373e73cde824f09464646c78f6e https://github.com/ehb54/ultrascan3/commit/cd22d118497ba373e73cde824f09464646c78f6e Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M gui/us_plot3d.cpp Log Message: ----------- Merge branch 'main' into lukas/us_analyte_protein_vbar_no_sequence Commit: a92e13702d0a02ed4fddd7be57df0c9ec134c449 https://github.com/ehb54/ultrascan3/commit/a92e13702d0a02ed4fddd7be57df0c9ec134c449 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M gui/us_analyte_gui.cpp Log Message: ----------- Merge pull request #392 from ehb54/lukas/us_analyte_protein_vbar_no_sequence Update condition for vbar20 comparison Commit: 648e2c616df93b8cb3f16672c3315e44e99a1cdd https://github.com/ehb54/ultrascan3/commit/648e2c616df93b8cb3f16672c3315e44e99a1cdd Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M gui/us_analyte_gui.cpp M gui/us_plot3d.cpp Log Message: ----------- Merge branch 'main' into lukas/us_ddist_combine_all_checkbox Commit: 524fb756825b453194c34611c2ce7624e62f7f53 https://github.com/ehb54/ultrascan3/commit/524fb756825b453194c34611c2ce7624e62f7f53 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M gui/us_analyte_gui.cpp M gui/us_plot3d.cpp Log Message: ----------- Merge branch 'main' into lukas/us_edit_scan_exclude_click Commit: 45a5699260fb89e53971aee6bbf0b5f13d1b40fa https://github.com/ehb54/ultrascan3/commit/45a5699260fb89e53971aee6bbf0b5f13d1b40fa Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M gui/us_analyte_gui.cpp M gui/us_plot3d.cpp Log Message: ----------- Merge branch 'main' into lukas/masterpassword_change Commit: 8a2d982f8e8906a85bfe363487622d59a1ff361e https://github.com/ehb54/ultrascan3/commit/8a2d982f8e8906a85bfe363487622d59a1ff361e Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M gui/us_analyte_gui.cpp M gui/us_plot3d.cpp M programs/CMakeLists.txt M programs/us/CMakeLists.txt M utils/us_timer.h M vcpkg.json Log Message: ----------- Merge branch 'main' into 527-enhancement-sphinx-migration-2 Commit: 6d361b64fc8f314fe8399f028d2c79ef9d0e417b https://github.com/ehb54/ultrascan3/commit/6d361b64fc8f314fe8399f028d2c79ef9d0e417b Author: aaron-auc Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M scripts/build.sh Log Message: ----------- mod: clean after build set Commit: 5b81b9c41fc973670663047afba591d6edaa898c https://github.com/ehb54/ultrascan3/commit/5b81b9c41fc973670663047afba591d6edaa898c Author: aaron-auc Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M admin/cmake/packaging/windows/WinDeploy.cmake Log Message: ----------- fix: packaging Commit: 10e620037c83dddc66d518ab28e33eb36c3e3c17 https://github.com/ehb54/ultrascan3/commit/10e620037c83dddc66d518ab28e33eb36c3e3c17 Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-14 (Sat, 14 Mar 2026) Changed paths: M gui/us_analyte_gui.cpp M gui/us_plot3d.cpp M programs/CMakeLists.txt M programs/us/CMakeLists.txt M utils/us_timer.h M vcpkg.json Log Message: ----------- Merge branch 'main' into ehb54-issue-670 Commit: 07c6d8042bd25e59ca20ca5bd16ed3b6ff8b321c https://github.com/ehb54/ultrascan3/commit/07c6d8042bd25e59ca20ca5bd16ed3b6ff8b321c Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-15 (Sun, 15 Mar 2026) Changed paths: M programs/us_config/us_admin.cpp Log Message: ----------- Merge pull request #385 from ehb54/lukas/masterpassword_change Refactor password re-encryption logic Commit: ed3ecfca235f46d9da27159afb01288bbcb42cd4 https://github.com/ehb54/ultrascan3/commit/ed3ecfca235f46d9da27159afb01288bbcb42cd4 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-15 (Sun, 15 Mar 2026) Changed paths: M programs/us_config/us_admin.cpp Log Message: ----------- Merge branch 'main' into lukas/us_ddist_combine_all_checkbox Commit: 3e5bea2d6f8973b1443f2db3438bbbcfe128378f https://github.com/ehb54/ultrascan3/commit/3e5bea2d6f8973b1443f2db3438bbbcfe128378f Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-15 (Sun, 15 Mar 2026) Changed paths: M programs/us_config/us_admin.cpp Log Message: ----------- Merge branch 'main' into lukas/us_edit_scan_exclude_click Commit: 3afad49842a3c53daabf741428b683cb8e86837c https://github.com/ehb54/ultrascan3/commit/3afad49842a3c53daabf741428b683cb8e86837c Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-15 (Sun, 15 Mar 2026) Changed paths: M programs/us_config/us_admin.cpp Log Message: ----------- Merge branch 'main' into 527-enhancement-sphinx-migration-2 Commit: afdf12344c5555d4130fa310bf352f2c27bbdadc https://github.com/ehb54/ultrascan3/commit/afdf12344c5555d4130fa310bf352f2c27bbdadc Author: aaron-auc Date: 2026-03-15 (Sun, 15 Mar 2026) Changed paths: A buildsys/vcpkg/overlay-ports/qttools.disable/devendor-litehtml.patch A buildsys/vcpkg/overlay-ports/qttools.disable/portfile.cmake A buildsys/vcpkg/overlay-ports/qttools.disable/vcpkg.json A buildsys/vcpkg/overlay-ports/qttools.disable/windeployqt.debug.bat R buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch R buildsys/vcpkg/overlay-ports/qttools/portfile.cmake R buildsys/vcpkg/overlay-ports/qttools/vcpkg.json R buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat Log Message: ----------- test remove qttools overlay Commit: 691c2112f822e5f82f6f153dbb8d568663367a2c https://github.com/ehb54/ultrascan3/commit/691c2112f822e5f82f6f153dbb8d568663367a2c Author: aaron-auc Date: 2026-03-15 (Sun, 15 Mar 2026) Changed paths: M programs/us_config/us_admin.cpp Log Message: ----------- Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2 Commit: 447c06a32ef5ade7850e1391500673c408a9c5e4 https://github.com/ehb54/ultrascan3/commit/447c06a32ef5ade7850e1391500673c408a9c5e4 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-03-16 (Mon, 16 Mar 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h Log Message: ----------- Refactor `US_Zoomer` and `US_DoubleClickEventFilter`: enhance zoom base initialization, update rubber band/tracker pen settings, and improve double-click handling for axes and curves. Commit: a73d1f0d1b712c4345cbd63219466ef87ccabfdb https://github.com/ehb54/ultrascan3/commit/a73d1f0d1b712c4345cbd63219466ef87ccabfdb Author: alexsav815 Date: 2026-03-16 (Mon, 16 Mar 2026) Changed paths: M programs/us_reporter_gmp/us_reporter_gmp.cpp Log Message: ----------- [5]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report... Commit: 28dafe4f6fe91d2a19d25a13dca2a9700c8524c1 https://github.com/ehb54/ultrascan3/commit/28dafe4f6fe91d2a19d25a13dca2a9700c8524c1 Author: alexsav815 Date: 2026-03-16 (Mon, 16 Mar 2026) Changed paths: M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h Log Message: ----------- [6]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report... Commit: 88e5262aa244a552236f70eb1b00274e245d2f90 https://github.com/ehb54/ultrascan3/commit/88e5262aa244a552236f70eb1b00274e245d2f90 Author: alexsav815 Date: 2026-03-16 (Mon, 16 Mar 2026) Changed paths: M programs/us_reporter_gmp/us_reporter_gmp.cpp Log Message: ----------- [6a]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...ush Commit: 5e19ef3b84e9f0542544c16ad99f1909133b6197 https://github.com/ehb54/ultrascan3/commit/5e19ef3b84e9f0542544c16ad99f1909133b6197 Author: alexsav815 Date: 2026-03-16 (Mon, 16 Mar 2026) Changed paths: M programs/us_reporter_gmp/us_reporter_gmp.cpp Log Message: ----------- [6b]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...ush Commit: cfd2bf22ab1f023d0f1bf0c3677f13218d99b4e3 https://github.com/ehb54/ultrascan3/commit/cfd2bf22ab1f023d0f1bf0c3677f13218d99b4e3 Author: alexsav815 Date: 2026-03-16 (Mon, 16 Mar 2026) Changed paths: M gui/us_analyte_gui.cpp M gui/us_plot3d.cpp M programs/CMakeLists.txt M programs/us/CMakeLists.txt M programs/us_config/us_admin.cpp M utils/us_timer.h M vcpkg.json Log Message: ----------- Merge pull request #393 from ehb54/main Merge main into alexey-dev-issue785 Commit: 5304d85db5ed89082fe2cf86d0fd9f3f3fbd65c3 https://github.com/ehb54/ultrascan3/commit/5304d85db5ed89082fe2cf86d0fd9f3f3fbd65c3 Author: Saeed Date: 2026-03-16 (Mon, 16 Mar 2026) Changed paths: M gui/us_analyte_gui.cpp M gui/us_extinction_gui.cpp M gui/us_extinction_gui.h M gui/us_plot3d.cpp M programs/CMakeLists.txt M programs/us/CMakeLists.txt M programs/us_config/us_admin.cpp M programs/us_legacy_converter/us_legacy_converter.cpp M programs/us_legacy_converter/us_legacy_converter.h M programs/us_query_rmsd/us_query_rmsd.cpp M programs/us_query_rmsd/us_query_rmsd.h M programs/us_ramp/us_ramp_gui.h M utils/us_timer.h M vcpkg.json Log Message: ----------- merge upstream/main , resolved conflicts Commit: 5fbfc3b610b9edaa535c2cdde484daba5a1f6d23 https://github.com/ehb54/ultrascan3/commit/5fbfc3b610b9edaa535c2cdde484daba5a1f6d23 Author: aaron-auc Date: 2026-03-16 (Mon, 16 Mar 2026) Changed paths: M admin/cmake/packaging/windows/WinDeploy.cmake A buildsys/vcpkg/overlay-ports/qt5-tools/fix-pkgconfig-qt5uiplugin-not-found.patch A buildsys/vcpkg/overlay-ports/qt5-tools/fix-spawnvp-argv.patch A buildsys/vcpkg/overlay-ports/qt5-tools/libclang.patch M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake M buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json M scripts/bootstrap-windows.ps1 M scripts/build.ps1 Log Message: ----------- fix: restore patch for qt5-tools Commit: ee9314b8a10555d579148933ce5fb59dc77f25a5 https://github.com/ehb54/ultrascan3/commit/ee9314b8a10555d579148933ce5fb59dc77f25a5 Author: aaron-auc Date: 2026-03-16 (Mon, 16 Mar 2026) Changed paths: M admin/cmake/packaging/windows/WinDeploy.cmake M scripts/bootstrap-windows.ps1 Log Message: ----------- fix: nasm check and add supporting dlls to installation Commit: f9860bd8d1ac6f5c5c4a4b0dd90e3cb7f09bd131 https://github.com/ehb54/ultrascan3/commit/f9860bd8d1ac6f5c5c4a4b0dd90e3cb7f09bd131 Author: aaron-auc Date: 2026-03-16 (Mon, 16 Mar 2026) Changed paths: M scripts/build.ps1 M vcpkg.json Log Message: ----------- mod: check path length is too long on qt 5 Commit: 4365eb02a1c29a38a42fe848da39deab69e67715 https://github.com/ehb54/ultrascan3/commit/4365eb02a1c29a38a42fe848da39deab69e67715 Author: aaron-auc Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: R buildsys/vcpkg/overlay-ports/qttools.disable/devendor-litehtml.patch R buildsys/vcpkg/overlay-ports/qttools.disable/portfile.cmake R buildsys/vcpkg/overlay-ports/qttools.disable/vcpkg.json R buildsys/vcpkg/overlay-ports/qttools.disable/windeployqt.debug.bat Log Message: ----------- del: remove unused overlay Commit: c9f9553d1be9cca2abdbef64d64daa2688c9b977 https://github.com/ehb54/ultrascan3/commit/c9f9553d1be9cca2abdbef64d64daa2688c9b977 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M programs/us_ddist_combine/us_ddist_combine.cpp Log Message: ----------- Merge pull request #390 from ehb54/lukas/us_ddist_combine_all_checkbox Change behavior of all button in combine discrete distributions Commit: 50ee53da3e470361bd6a9fa94454856cc21660a1 https://github.com/ehb54/ultrascan3/commit/50ee53da3e470361bd6a9fa94454856cc21660a1 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M programs/us_ddist_combine/us_ddist_combine.cpp Log Message: ----------- Merge branch 'main' into lukas/us_edit_scan_exclude_click Commit: c6c251770d12273ef8519ef12212ecaf90df9c8a https://github.com/ehb54/ultrascan3/commit/c6c251770d12273ef8519ef12212ecaf90df9c8a Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h Log Message: ----------- Merge pull request #388 from ehb54/lukas/us_edit_scan_exclude_click Refactor US_Plot interactions and enhance US_Edit functionality Commit: efe1a2ba8b277a19ae50d1262c14239f9f9dac81 https://github.com/ehb54/ultrascan3/commit/efe1a2ba8b277a19ae50d1262c14239f9f9dac81 Author: aaron-auc Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M scripts/bootstrap-linux.sh Log Message: ----------- add: missing linux packages libsm-dev libice-dev Commit: 84f1faaa0819a233d3023bd3ae0d75d2ccaf6430 https://github.com/ehb54/ultrascan3/commit/84f1faaa0819a233d3023bd3ae0d75d2ccaf6430 Author: aaron-auc Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: A buildsys/vcpkg/overlay-ports/mpg123/fix-arm64-no-fpu-neon64.patch A buildsys/vcpkg/overlay-ports/mpg123/have-fpu.diff A buildsys/vcpkg/overlay-ports/mpg123/pkgconfig.diff A buildsys/vcpkg/overlay-ports/mpg123/portfile.cmake A buildsys/vcpkg/overlay-ports/mpg123/vcpkg.json Log Message: ----------- add: port overlay for linux arm fix Commit: aae4ac3a14f0a1c0ce391cedb1844ac845045869 https://github.com/ehb54/ultrascan3/commit/aae4ac3a14f0a1c0ce391cedb1844ac845045869 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M utils/us_crypto.cpp Log Message: ----------- Change encryption finalization to decryption Commit: 9454cb777d85cb65835ea5eb51fc05bc18d58e78 https://github.com/ehb54/ultrascan3/commit/9454cb777d85cb65835ea5eb51fc05bc18d58e78 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M test/utils/test_us_crypto.cpp Log Message: ----------- Implement EncryptDecryptTest for US_Crypto Add unit test for encryption and decryption consistency Commit: 2c028de85502d48e60a380c61b93dc7a7e2f7727 https://github.com/ehb54/ultrascan3/commit/2c028de85502d48e60a380c61b93dc7a7e2f7727 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M test/utils/test_us_crypto.cpp Log Message: ----------- Add unit test for encryption with different passwords Commit: ac1ca1f8183d056ed7e98541ac5ac52d725b33f8 https://github.com/ehb54/ultrascan3/commit/ac1ca1f8183d056ed7e98541ac5ac52d725b33f8 Author: alexsav815 Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp M utils/us_run_protocol.cpp M utils/us_run_protocol.h Log Message: ----------- GMP-ABDE: Ranges & Upload check for ext. profiles -- while situations when extinction profiles for one or more analytes do not cover all wvls in Ranges are caught, the message is misleading and does not provide a hint for inability to proceed; capture exact message at the stage of living 7. Ranges panel & pass to Upload tab before enabling run submission... Commit: 8ba4b05b7f14586d7e527145ba6c464fd3dc3e4d https://github.com/ehb54/ultrascan3/commit/8ba4b05b7f14586d7e527145ba6c464fd3dc3e4d Author: Saeed Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- add wavelength limit picker, add checkbox for db loadings Commit: efd337809634d3a364046f3a040862ce1b2a81f4 https://github.com/ehb54/ultrascan3/commit/efd337809634d3a364046f3a040862ce1b2a81f4 Author: Saeed Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h Log Message: ----------- Merge remote-tracking branch 'upstream/main' into ticket_748 Commit: b94ce34c55dd06ddc8ccfbb1239c262fe1c9cd52 https://github.com/ehb54/ultrascan3/commit/b94ce34c55dd06ddc8ccfbb1239c262fe1c9cd52 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M test/utils/test_us_crypto.cpp M utils/us_crypto.cpp Log Message: ----------- Merge pull request #395 from ehb54/lukas/us_crypto_decrypt_fix Change encryption finalization to decryption Commit: d6c8bb86eb4e77d526599971c15a35328a4927d8 https://github.com/ehb54/ultrascan3/commit/d6c8bb86eb4e77d526599971c15a35328a4927d8 Author: alexsav815 Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M test/utils/test_us_crypto.cpp M utils/us_crypto.cpp Log Message: ----------- Merge branch 'main' into alexey-dev-issue791 Commit: e163509a00c5876ac83d78f14c8a969dae251b75 https://github.com/ehb54/ultrascan3/commit/e163509a00c5876ac83d78f14c8a969dae251b75 Author: alexsav815 Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h M test/utils/test_us_crypto.cpp M utils/us_crypto.cpp Log Message: ----------- Merge branch 'main' into alexey-dev-issue785 Commit: 501adedca88f7d331c3a70d62c04cc4992f86979 https://github.com/ehb54/ultrascan3/commit/501adedca88f7d331c3a70d62c04cc4992f86979 Author: aaron-auc Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M admin/cmake/packaging/macos/MacDeploy.cmake M admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake A admin/cmake/packaging/macos/StageAssistantDev.cmake M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake A buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch A buildsys/vcpkg/overlay-ports/qttools/port.data.cmake A buildsys/vcpkg/overlay-ports/qttools/portfile.cmake A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake M programs/us/CMakeLists.txt M scripts/build.sh Log Message: ----------- add: overlay port for qttools Commit: e1e93704ad79bf8d43c6c4eba74a4c90b1dc1fdf https://github.com/ehb54/ultrascan3/commit/e1e93704ad79bf8d43c6c4eba74a4c90b1dc1fdf Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h M test/utils/test_us_crypto.cpp M utils/us_crypto.cpp Log Message: ----------- Merge branch 'main' into 527-enhancement-sphinx-migration-2 Commit: ce7a1d14ace3b2d645b17aeab7be4f3fb881ff7b https://github.com/ehb54/ultrascan3/commit/ce7a1d14ace3b2d645b17aeab7be4f3fb881ff7b Author: alexsav815 Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M programs/us_analysis_profile/us_anapro_utils.cpp M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h Log Message: ----------- Merge pull request #394 from ehb54/alexey-dev-issue785 Alexey dev issue785: Show sigle-channel-replica group info in the Average over Replicas Section of the Report Commit: e6579802fd032cde1c91863e8af0b2885d936062 https://github.com/ehb54/ultrascan3/commit/e6579802fd032cde1c91863e8af0b2885d936062 Author: alexsav815 Date: 2026-03-17 (Tue, 17 Mar 2026) Changed paths: M programs/us_analysis_profile/us_anapro_utils.cpp M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h Log Message: ----------- Merge branch 'main' into alexey-dev-issue791 Commit: d0eb3d3a8f27a33f4dc6b857f1a2ddcb6c52af5d https://github.com/ehb54/ultrascan3/commit/d0eb3d3a8f27a33f4dc6b857f1a2ddcb6c52af5d Author: Saeed Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_analysis_profile/us_anapro_utils.cpp M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h M test/utils/test_us_crypto.cpp M utils/us_crypto.cpp Log Message: ----------- Merge remote-tracking branch 'upstream/main' into ticket_748 Commit: 563c55a8a0ccb209a43dc363ec87842b0f4d6489 https://github.com/ehb54/ultrascan3/commit/563c55a8a0ccb209a43dc363ec87842b0f4d6489 Author: Saeed Mortezazadeh <49119048+samo38 at users.noreply.github.com> Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- Merge pull request #387 from samo38/ticket_748 Ticket 748: Enhance Spectrum Decomposition GUI and functionality Commit: 3fef021d4fad55bc1bb07521af0bff3e7ac12095 https://github.com/ehb54/ultrascan3/commit/3fef021d4fad55bc1bb07521af0bff3e7ac12095 Author: alexsav815 Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h Log Message: ----------- Merge branch 'main' into alexey-dev-issue791 Commit: cb192562f44149651f3157090d395a05f79da39e https://github.com/ehb54/ultrascan3/commit/cb192562f44149651f3157090d395a05f79da39e Author: alexsav815 Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp M utils/us_run_protocol.cpp M utils/us_run_protocol.h Log Message: ----------- Merge pull request #396 from ehb54/alexey-dev-issue791 GMP-ABDE: Ranges & Upload check for ext. profiles -- while situations? Commit: b1fbfbcbd47cd296b70ccd6ac9178c4efd6b4a4e https://github.com/ehb54/ultrascan3/commit/b1fbfbcbd47cd296b70ccd6ac9178c4efd6b4a4e Author: alexsav815 Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h Log Message: ----------- GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk... Commit: a3b6b6a58f4f1d94a9268cc04a014d3ce1a1471e https://github.com/ehb54/ultrascan3/commit/a3b6b6a58f4f1d94a9268cc04a014d3ce1a1471e Author: alexsav815 Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp Log Message: ----------- [1]GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk... Commit: 992f15191ea67cf8c4dc85736429ab5939967d2f https://github.com/ehb54/ultrascan3/commit/992f15191ea67cf8c4dc85736429ab5939967d2f Author: alexsav815 Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp Log Message: ----------- [2]GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk... Commit: 50c4d0f4452a8f5f8052b4e63ae06abb11f8fe89 https://github.com/ehb54/ultrascan3/commit/50c4d0f4452a8f5f8052b4e63ae06abb11f8fe89 Author: alexsav815 Date: 2026-03-18 (Wed, 18 Mar 2026) Changed paths: M programs/us_experiment/us_exp_utils.cpp Log Message: ----------- [3]GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk... Commit: 81695e7ad3f97f7cd46fe42d8148a8911fc3fc43 https://github.com/ehb54/ultrascan3/commit/81695e7ad3f97f7cd46fe42d8148a8911fc3fc43 Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com> Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M programs/us_analysis_profile/us_anapro_utils.cpp M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h M utils/us_run_protocol.cpp M utils/us_run_protocol.h Log Message: ----------- Merge branch 'main' into 527-enhancement-sphinx-migration-2 Commit: bed8960f5d491db022be512a82491fc248abcbf9 https://github.com/ehb54/ultrascan3/commit/bed8960f5d491db022be512a82491fc248abcbf9 Author: aaron-auc Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M CMakeLists.txt M doc/manual/CMakeLists.txt M doc/manual/README.md M doc/manual/source/conf.py M programs/us/CMakeLists.txt Log Message: ----------- mod: PR comments addressed Commit: 5205cb5542bd366b63909189ac9691c6473fc071 https://github.com/ehb54/ultrascan3/commit/5205cb5542bd366b63909189ac9691c6473fc071 Author: aaron-auc Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h M programs/us_analysis_profile/us_anapro_utils.cpp M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h M test/utils/test_us_crypto.cpp M utils/us_crypto.cpp M utils/us_run_protocol.cpp M utils/us_run_protocol.h Log Message: ----------- Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2 Commit: 76e772666ba74f76a6d525444b9c0cd8f9d01e76 https://github.com/ehb54/ultrascan3/commit/76e772666ba74f76a6d525444b9c0cd8f9d01e76 Author: aaron-auc Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M CMakeLists.txt M doc/manual/CMakeLists.txt Log Message: ----------- fix: skip subdirectory doc/manual if hpc or documentation off Commit: abe431ae514b67270d74e84b599ef069673c1164 https://github.com/ehb54/ultrascan3/commit/abe431ae514b67270d74e84b599ef069673c1164 Author: alexsav815 Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h Log Message: ----------- GMP-ABDE -- 4. EDIT points addressed for ticket #792... Commit: b1c5c0de414d093440081fca1a975a4e1118a9d1 https://github.com/ehb54/ultrascan3/commit/b1c5c0de414d093440081fca1a975a4e1118a9d1 Author: alexsav815 Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- [1]GMP-ABDE -- 4. EDIT points addressed for ticket #792... Commit: c53782335d3f1e5fc4fc2ea6f97ee3d64c79389b https://github.com/ehb54/ultrascan3/commit/c53782335d3f1e5fc4fc2ea6f97ee3d64c79389b Author: alexsav815 Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- [2]GMP-ABDE -- 4. EDIT points addressed for ticket #792... Commit: 672254d0e59b1e555aa0aa2506e7871bb188c5d4 https://github.com/ehb54/ultrascan3/commit/672254d0e59b1e555aa0aa2506e7871bb188c5d4 Author: alexsav815 Date: 2026-03-19 (Thu, 19 Mar 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- [3]GMP-ABDE -- 4. EDIT points addressed for ticket #792... Commit: 05b438d52cffda88429e278cae66fead57b193ec https://github.com/ehb54/ultrascan3/commit/05b438d52cffda88429e278cae66fead57b193ec Author: aaron-auc Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M CMakePresets.json M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake R doc/manual/source/conf.py-orig.081225 M gui/CMakeLists.txt M programs/us_helpdaemon/us_helpdaemon.cpp Log Message: ----------- fix: Reformat CMakePresets.json to multi-line style; add US3_NO_DB=ON to all HPC presets; fix GLU elseif(UNIX) branch; drop dead Windows assistant path check. Commit: 21882cd1fd05a489de72b721e1e4bebaa8fb9ac5 https://github.com/ehb54/ultrascan3/commit/21882cd1fd05a489de72b721e1e4bebaa8fb9ac5 Author: aaron-auc Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M CMakeLists.txt M doc/manual/CMakeLists.txt M programs/us/CMakeLists.txt Log Message: ----------- fix: pr comments Commit: 39a94736afc6e6b1450549833138c494fc1ff36b https://github.com/ehb54/ultrascan3/commit/39a94736afc6e6b1450549833138c494fc1ff36b Author: aaron-auc Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M doc/manual/Makefile Log Message: ----------- fix: make all moved to top Commit: 5470c9ac380ea0b9e9e522bcb85e831bf0e466fd https://github.com/ehb54/ultrascan3/commit/5470c9ac380ea0b9e9e522bcb85e831bf0e466fd Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M gui/us_solution_gui.cpp M gui/us_solution_gui.h Log Message: ----------- Enforce analyte for solution in us_solution_gui Commit: cb5e49b544fddf3329fd8662619f4a524628a69e https://github.com/ehb54/ultrascan3/commit/cb5e49b544fddf3329fd8662619f4a524628a69e Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M gui/us_solution_gui.cpp M gui/us_solution_gui.h Log Message: ----------- Update comments, fix function signature Commit: 01301f4fb775a852d7048cf88a308ff8dd796f5a https://github.com/ehb54/ultrascan3/commit/01301f4fb775a852d7048cf88a308ff8dd796f5a Author: alexsav815 Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M programs/us_abde/us_norm_profile.cpp Log Message: ----------- GMP-ABDE -- 5. Analysis addressed for ticket #792... Commit: 3ba588420b506827b73516e8dfa8cd4ae9b2ff28 https://github.com/ehb54/ultrascan3/commit/3ba588420b506827b73516e8dfa8cd4ae9b2ff28 Author: alexsav815 Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M programs/us_abde/us_norm_profile.cpp Log Message: ----------- [2]GMP-ABDE -- 5. Analysis addressed for ticket #792... Commit: 55ad77b5ea4726efff74c2e3da2b763af7b12070 https://github.com/ehb54/ultrascan3/commit/55ad77b5ea4726efff74c2e3da2b763af7b12070 Author: aaron-auc Date: 2026-03-20 (Fri, 20 Mar 2026) Changed paths: M CMakeLists.txt M CMakePresets.json M doc/manual/CMakeLists.txt Log Message: ----------- fix: presets Commit: ad1ceab5b0c51349e506ad4feebf2d0e9442b18f https://github.com/ehb54/ultrascan3/commit/ad1ceab5b0c51349e506ad4feebf2d0e9442b18f Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-21 (Sat, 21 Mar 2026) Changed paths: M gui/us_solution_gui.cpp Log Message: ----------- Show warning before accepting a solution without analyte or common vbar Commit: 7bfe32ca6b7830a5b30fc3e995feb35daccc7460 https://github.com/ehb54/ultrascan3/commit/7bfe32ca6b7830a5b30fc3e995feb35daccc7460 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-21 (Sat, 21 Mar 2026) Changed paths: M utils/us_astfem_rsa.cpp Log Message: ----------- Add band_forming check for low concentration flag Commit: fb3b2bbbe972a00864dd68b72b5da64234516056 https://github.com/ehb54/ultrascan3/commit/fb3b2bbbe972a00864dd68b72b5da64234516056 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-21 (Sat, 21 Mar 2026) Changed paths: M programs/us_astfem_sim/us_astfem_sim.cpp Log Message: ----------- Fix y-axis scale for band-forming plots Commit: 8aeda75b69a9c2d9df2af035ea7265bb93bdacef https://github.com/ehb54/ultrascan3/commit/8aeda75b69a9c2d9df2af035ea7265bb93bdacef Author: aaron-auc Date: 2026-03-21 (Sat, 21 Mar 2026) Changed paths: A admin/cmake/README.md A admin/cmake/packaging/README.md A pkg/macos/README.md Log Message: ----------- mod: readmes Commit: 81c3a3a5d2a743645b19098027b58ecdc429d634 https://github.com/ehb54/ultrascan3/commit/81c3a3a5d2a743645b19098027b58ecdc429d634 Author: aaron-auc Date: 2026-03-22 (Sun, 22 Mar 2026) Changed paths: R doc/manual/source/2dsa/2dsa_adv.rst R doc/manual/source/2dsa/2dsa_analys.rst R doc/manual/source/2dsa/2dsa_main.rst R doc/manual/source/2dsa/index.rst R doc/manual/source/3d_plot.rst R doc/manual/source/analyte/analyte_edit.rst R doc/manual/source/analyte/analyte_new.rst R doc/manual/source/analyte/analyte_select.rst R doc/manual/source/analyte/analyte_settings.rst R doc/manual/source/analyte/index.rst R doc/manual/source/associations.rst R doc/manual/source/astfem_sim.rst R doc/manual/source/beckman_openauc.rst R doc/manual/source/buffer/buffer_edit.rst R doc/manual/source/buffer/buffer_new.rst R doc/manual/source/buffer/buffer_select.rst R doc/manual/source/buffer/buffer_settings.rst R doc/manual/source/buffer/index.rst R doc/manual/source/buoyancy_editor.rst R doc/manual/source/colorgradient.rst R doc/manual/source/combine_models.rst R doc/manual/source/common_dialogs.rst R doc/manual/source/components.rst R doc/manual/source/config.rst R doc/manual/source/convert.rst R doc/manual/source/ddist_combine.rst R doc/manual/source/dens_match.rst R doc/manual/source/dmga_init.rst R doc/manual/source/dmga_init_constr.rst R doc/manual/source/experiment/cells.rst R doc/manual/source/experiment/general.rst R doc/manual/source/experiment/import.rst R doc/manual/source/experiment/index.rst R doc/manual/source/experiment/liveupdate.rst R doc/manual/source/experiment/optics.rst R doc/manual/source/experiment/range.rst R doc/manual/source/experiment/rotor.rst R doc/manual/source/experiment/solutions.rst R doc/manual/source/experiment/speeds.rst R doc/manual/source/experiment/submit.rst R doc/manual/source/export_legacy.rst R doc/manual/source/fe_match/fe_match_adv.rst R doc/manual/source/fe_match/fe_match_main.rst R doc/manual/source/fe_match/fe_match_simulate.rst R doc/manual/source/fe_match/index.rst R doc/manual/source/fit_meniscus.rst R doc/manual/source/ga_initialize.rst R doc/manual/source/gmp/gmp.rst R doc/manual/source/gmp/gmp_audit_trail.rst R doc/manual/source/gmp/gmp_automation.rst R 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programs/us_mpi_analysis/pcsa_worker.cpp M programs/us_mpi_analysis/revision.sh M programs/us_mpi_analysis/us_mpi_analysis.cpp M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h M qwtplot3d/CMakeLists.txt A scripts/bootstrap-linux.sh A scripts/bootstrap-macos.sh A scripts/bootstrap-windows.ps1 A scripts/bootstrap.bat M scripts/build.bat M scripts/build.ps1 M scripts/build.sh M test/utils/test_us_crypto.cpp A us-build M utils/CMakeLists.txt M utils/us_crypto.cpp M utils/us_memory.cpp M utils/us_run_protocol.cpp M utils/us_run_protocol.h M vcpkg.json Log Message: ----------- Merge branch 'main' into ehb54-issue-670 Commit: a3d889c69f7012ff5840a86814780d3490d5ea2a https://github.com/ehb54/ultrascan3/commit/a3d889c69f7012ff5840a86814780d3490d5ea2a Author: emre brookes Date: 2026-03-24 (Tue, 24 Mar 2026) Changed paths: M programs/us/revision.sh Log Message: ----------- Merge pull request #377 from ehb54/ehb54-issue-670 fix revision.sh checks osx/linux compat. 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vcpkg.json Log Message: ----------- Merge branch 'main' into lukas/us_astfem_sim_bfe_fix Commit: e219670a84259a14eabcbd6567f410caa19460e4 https://github.com/ehb54/ultrascan3/commit/e219670a84259a14eabcbd6567f410caa19460e4 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-26 (Thu, 26 Mar 2026) Changed paths: M makeall.sh Log Message: ----------- Fix makeall.sh permissions Commit: ffbfc46c1f6425db8f285c8ebfe83093848eb1b6 https://github.com/ehb54/ultrascan3/commit/ffbfc46c1f6425db8f285c8ebfe83093848eb1b6 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-26 (Thu, 26 Mar 2026) Changed paths: M qmakeall.sh Log Message: ----------- Fix qmakeall.sh permissions Commit: ce69cccd373c62d3682696c7c1e3afbec47ca21c https://github.com/ehb54/ultrascan3/commit/ce69cccd373c62d3682696c7c1e3afbec47ca21c Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-27 (Fri, 27 Mar 2026) Changed paths: M gui/us_solution_gui.cpp M gui/us_solution_gui.h Log Message: ----------- Merge pull request #397 from ehb54/lukas/us_solution_analyte Enforce analyte for solution in us_solution_gui Commit: cdf7099448e0de34a4e877280839f6acfacf5596 https://github.com/ehb54/ultrascan3/commit/cdf7099448e0de34a4e877280839f6acfacf5596 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-03-27 (Fri, 27 Mar 2026) Changed paths: M gui/us_solution_gui.cpp M gui/us_solution_gui.h Log Message: ----------- Merge branch 'main' into lukas/us_astfem_sim_bfe_fix Commit: b543a92af379330a545e7dcc63e12daaf3d45239 https://github.com/ehb54/ultrascan3/commit/b543a92af379330a545e7dcc63e12daaf3d45239 Author: alexsav815 Date: 2026-03-27 (Fri, 27 Mar 2026) Changed paths: M programs/us_edit/us_edit.cpp Log Message: ----------- GMP-ABDE -- 4. 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vcpkg.json Log Message: ----------- Merge pull request #401 from ehb54/main pull main into alexey-dev-issue792 Commit: 82d4d191eb9afe4cf103b3792c6730f51eb8bafa https://github.com/ehb54/ultrascan3/commit/82d4d191eb9afe4cf103b3792c6730f51eb8bafa Author: alexsav815 Date: 2026-04-02 (Thu, 02 Apr 2026) Changed paths: M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h Log Message: ----------- GMP-ABDE -- 4. EDIT: ask user if only last scan was selected for each channel before accepting new edit parameters... Commit: e58b784f94dc22571d37ac77acdc90c148ee0004 https://github.com/ehb54/ultrascan3/commit/e58b784f94dc22571d37ac77acdc90c148ee0004 Author: alexsav815 Date: 2026-04-02 (Thu, 02 Apr 2026) Changed paths: M programs/us_abde/us_norm_profile.cpp M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h Log Message: ----------- Merge pull request #398 from ehb54/alexey-dev-issue792 Alexey dev issue792: GMP-ABDE & dataDisk changes Commit: 94b9a553e412fb675ba67eea2c9f665b6207233d https://github.com/ehb54/ultrascan3/commit/94b9a553e412fb675ba67eea2c9f665b6207233d Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/CMakeLists.txt Log Message: ----------- Update CMakeLists to use `${SPHINX_PROJECT}` variables for Qt help file generation paths (`.qhp` and `.qhcp`). Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: e2d7da6bbf9fcc62e4bfa452f5ec19623488611e https://github.com/ehb54/ultrascan3/commit/e2d7da6bbf9fcc62e4bfa452f5ec19623488611e Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/requirements.txt Log Message: ----------- Add `sphinxcontrib-qthelp` and `myst-parser` to documentation requirements for Qt help and Markdown support. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 1e69c5071f55b5bc4963bc33c54c1f5978d9a86f https://github.com/ehb54/ultrascan3/commit/1e69c5071f55b5bc4963bc33c54c1f5978d9a86f Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Enhance Sphinx configuration: add version metadata generation from Git, update QtHelp/HTML output, and refine documentation structure. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 64293373d85c1dd99096806b49351207ccc8fcbd https://github.com/ehb54/ultrascan3/commit/64293373d85c1dd99096806b49351207ccc8fcbd Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/index.rst Log Message: ----------- Expand UltraScan-III documentation: add comprehensive structure, improve navigation with toctree captions, and include download link for PDF manual. 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Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 518c1ee39c53443282fc68ec37cc855b2e5aa4f0 https://github.com/ehb54/ultrascan3/commit/518c1ee39c53443282fc68ec37cc855b2e5aa4f0 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update Sphinx configuration: adjust LaTeX preamble for header height and standardize document titles across output formats. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 2946f944109702806ad7b25d283b258d3702adfa https://github.com/ehb54/ultrascan3/commit/2946f944109702806ad7b25d283b258d3702adfa Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/xpn_viewer.rst Log Message: ----------- Standardize "Optima" capitalization across XPN Viewer documentation. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 34d316c7e97fcdabcf86b0939a85e834d6d878f6 https://github.com/ehb54/ultrascan3/commit/34d316c7e97fcdabcf86b0939a85e834d6d878f6 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/vhw_enhanced.rst Log Message: ----------- Fix typo in vHW documentation: correct "Wieschet" to "Weischet". Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 56e8463890e60e8501b4233fb88a6dd74f0e39f4 https://github.com/ehb54/ultrascan3/commit/56e8463890e60e8501b4233fb88a6dd74f0e39f4 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/index.rst Log Message: ----------- Update Ultrascan-III website URL in documentation. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: ff5165410e579e9e3bf489cf74532942d4dd1b6d https://github.com/ehb54/ultrascan3/commit/ff5165410e579e9e3bf489cf74532942d4dd1b6d Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/config.rst Log Message: ----------- Revise configuration documentation: clarify directory descriptions, standardize terminology, improve debugging/debug level explanations, and update Optima panel section with centered image and corrected details. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 9d89cccbd5d1edac19f5118f9f73b017b4b62768 https://github.com/ehb54/ultrascan3/commit/9d89cccbd5d1edac19f5118f9f73b017b4b62768 Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/experiment/import.rst Log Message: ----------- Fix image filename in import documentation: correct "Triplicate" to "triple". Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 20e6e37595eff7fcd8c617c1ae65f049be8e60f5 https://github.com/ehb54/ultrascan3/commit/20e6e37595eff7fcd8c617c1ae65f049be8e60f5 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: A doc/manual/source/auto_index.py Log Message: ----------- Add Sphinx transform for auto-generating index entries from section titles. Commit: 78763cd74bcca991929a7dc53e314e9e61a755b6 https://github.com/ehb54/ultrascan3/commit/78763cd74bcca991929a7dc53e314e9e61a755b6 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update Sphinx configuration: add `auto_index` extension and adjust sys.path setup for dynamic module resolution. Commit: e67f33a49e896d701d7a71317d8d8b2dcebb45a9 https://github.com/ehb54/ultrascan3/commit/e67f33a49e896d701d7a71317d8d8b2dcebb45a9 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: R doc/manual/source/_static/images/optima_config_edit.png M doc/manual/source/_static/images/optima_config_new.png Log Message: ----------- Update Optima configuration images in documentation: delete outdated file and revise new image. Commit: a0df61141d5869a4c8d57ccdaf8896b84fbf1add https://github.com/ehb54/ultrascan3/commit/a0df61141d5869a4c8d57ccdaf8896b84fbf1add Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/config.rst Log Message: ----------- Standardize header formatting in configuration documentation: adjust underline lengths and update section titles for consistency. Commit: 20a795daec1d9d2b8a1e99a9522c5b0f39516f9f https://github.com/ehb54/ultrascan3/commit/20a795daec1d9d2b8a1e99a9522c5b0f39516f9f Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update Sphinx configuration: fix sys.path insertion to correctly add the current directory. Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: 7022886ca10e06e291974dd36c40d68886f97592 https://github.com/ehb54/ultrascan3/commit/7022886ca10e06e291974dd36c40d68886f97592 Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_adv.rst Log Message: ----------- Update doc/manual/source/2dsa/2dsa_adv.rst Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com> Commit: fec01135a70f30bb6fe279c6355c6d8d46e50f02 https://github.com/ehb54/ultrascan3/commit/fec01135a70f30bb6fe279c6355c6d8d46e50f02 Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-04-03 (Fri, 03 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_analys.rst Log Message: ----------- Update doc/manual/source/2dsa/2dsa_analys.rst Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com> Commit: 213c7d1f346ca9afa40c688dc5d4daae4e55d79f https://github.com/ehb54/ultrascan3/commit/213c7d1f346ca9afa40c688dc5d4daae4e55d79f Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: R doc/manual/source/_static/css/custom.css M doc/manual/source/_static/custom.css Log Message: ----------- Remove unused `custom.css` file and retain only essential styles in `custom.css` for cleaner documentation styling. Commit: f31826280b208f87c2044d91ceed9b3b725941b8 https://github.com/ehb54/ultrascan3/commit/f31826280b208f87c2044d91ceed9b3b725941b8 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/_static/images/gmp/automation/auto_edit.png M doc/manual/source/_static/images/gmp/automation/data_viewer_tin.png M doc/manual/source/_static/images/gmp/automation/lims.png M doc/manual/source/_static/images/reporter-cmenu.png M doc/manual/source/_static/images/us_project_webed.png Log Message: ----------- Downscale extremely large images Commit: 0d8aa5eb3868f4fa28393c667f367905088267c1 https://github.com/ehb54/ultrascan3/commit/0d8aa5eb3868f4fa28393c667f367905088267c1 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Add support for qthelp exclusive css file Commit: 50222b23f0a251076777810ba005c924ef2ddb00 https://github.com/ehb54/ultrascan3/commit/50222b23f0a251076777810ba005c924ef2ddb00 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: A doc/manual/source/_static/qthelp.css Log Message: ----------- Add `qthelp.css` file to define default styling for QtHelp documentation Commit: 86fcf7036c1ad44220fbb6544552d2e7458fd76e https://github.com/ehb54/ultrascan3/commit/86fcf7036c1ad44220fbb6544552d2e7458fd76e Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/3d_plot.rst M doc/manual/source/config.rst M doc/manual/source/fit_meniscus.rst M doc/manual/source/pseudo3d.rst Log Message: ----------- Standardize help text and add debug text options in configuration documentation. Commit: 38351d9b483d34b0d464cdc0a02cf4d0c711a5f0 https://github.com/ehb54/ultrascan3/commit/38351d9b483d34b0d464cdc0a02cf4d0c711a5f0 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/auto_index.py Log Message: ----------- Refine `auto_index` title processing: improve whitespace handling, enhance dimensional notation standardization, and ensure title case consistency. Commit: 881728a585525975764e48eb87de544e1a8f5ed6 https://github.com/ehb54/ultrascan3/commit/881728a585525975764e48eb87de544e1a8f5ed6 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/fe_match/index.rst Log Message: ----------- Standardize section headers and titles in FE Match documentation for consistency and improve formatting. 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Commit: 99bbe83fea89b40008e71864323759b4a75ff8cb https://github.com/ehb54/ultrascan3/commit/99bbe83fea89b40008e71864323759b4a75ff8cb Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/start_page-rpt.rst Log Message: ----------- Standardize section headers, titles, and dimensional notations in documentation for improved formatting and consistency. 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----------- Merge pull request #402 from ehb54/lukas/manual Add sphinx manual Commit: dd51d90b60e4fd6785c98531588a585dc0fb34ed https://github.com/ehb54/ultrascan3/commit/dd51d90b60e4fd6785c98531588a585dc0fb34ed Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/CMakeLists.txt A doc/manual/source/2dsa/2dsa_adv.rst A doc/manual/source/2dsa/2dsa_analys.rst A doc/manual/source/2dsa/2dsa_main.rst A doc/manual/source/2dsa/index.rst A doc/manual/source/3000_rpm.rst A doc/manual/source/3d_plot.rst R doc/manual/source/_static/css/custom.css A doc/manual/source/_static/custom.css A doc/manual/source/_static/images/2dsa_3dplot.png A doc/manual/source/_static/images/2dsa_advan.png A doc/manual/source/_static/images/2dsa_analvv.png A doc/manual/source/_static/images/2dsa_analys.png A doc/manual/source/_static/images/2dsa_main-c.png A doc/manual/source/_static/images/2dsa_main-o.png A 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----------- Merge pull request #404 from ehb54/main update demeler-doc1 to main Commit: cd2bc2e7c99e075b63a282c8e687e6d0e111670d https://github.com/ehb54/ultrascan3/commit/cd2bc2e7c99e075b63a282c8e687e6d0e111670d Author: Demeler Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/fit_meniscus.rst Log Message: ----------- Modify capitalization in fit meniscus Commit: cc049b493eb8cb3409dd4d22051e345fd80c7982 https://github.com/ehb54/ultrascan3/commit/cc049b493eb8cb3409dd4d22051e345fd80c7982 Author: Borries Demeler <7659499+demeler at users.noreply.github.com> Date: 2026-04-04 (Sat, 04 Apr 2026) Changed paths: M doc/manual/source/fit_meniscus.rst Log Message: ----------- Merge pull request #405 from ehb54/demeler-doc1 Demeler doc1 Commit: 11572ca66d369080b73f5925c9b46c3b7200c538 https://github.com/ehb54/ultrascan3/commit/11572ca66d369080b73f5925c9b46c3b7200c538 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-06 (Mon, 06 Apr 2026) Changed paths: M doc/manual/CMakeLists.txt M doc/manual/Makefile M doc/manual/source/index.rst Log Message: ----------- Update Sphinx build system: include `auto_index.py`, link PDF manual in HTML, and clean PDF on `make clean`. Commit: e2fbf48c659f3fad2922c9067a43f1b3bdc0ec5e https://github.com/ehb54/ultrascan3/commit/e2fbf48c659f3fad2922c9067a43f1b3bdc0ec5e Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-06 (Mon, 06 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Update LaTeX configuration: set `latex_use_xindy` to False and redefine font settings for better Unicode handling and compatibility. 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Commit: a542b58b077c8629e05993705eb0967c8e2ed720 https://github.com/ehb54/ultrascan3/commit/a542b58b077c8629e05993705eb0967c8e2ed720 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .gitignore Log Message: ----------- Update .gitignore to exclude `doc/manual/build` Commit: 3841b3da9b269c931e61bd8332217ea7edafa5ce https://github.com/ehb54/ultrascan3/commit/3841b3da9b269c931e61bd8332217ea7edafa5ce Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M utils/CMakeLists.txt M utils/us_extern.h Log Message: ----------- Add static library support: define `US_UTIL_STATIC` and conditionally update `us_extern.h`. 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Commit: 78e6d90c9756f558dd3c67e03ec447dbaa996a8a https://github.com/ehb54/ultrascan3/commit/78e6d90c9756f558dd3c67e03ec447dbaa996a8a Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .github/workflows/doc-build.yml Log Message: ----------- Let github action only build the documnetaion with the qthelp builder, because latex dependencies are currently missing Commit: 05eb1370b6158124bcafd398fef77466e66be0aa https://github.com/ehb54/ultrascan3/commit/05eb1370b6158124bcafd398fef77466e66be0aa Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h Log Message: ----------- Remove feature commit in wrong branch Commit: 18c02644a764f585fd585e1af1c21e4d5790b60c https://github.com/ehb54/ultrascan3/commit/18c02644a764f585fd585e1af1c21e4d5790b60c Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h Log Message: ----------- Merge pull request #406 from ehb54/lukas/us_plot_zoom_qwt616 Ensure zoom stack initialization on zoom button press Commit: 3c1312a39ac562248315fb410c301c9d8eab79f5 https://github.com/ehb54/ultrascan3/commit/3c1312a39ac562248315fb410c301c9d8eab79f5 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M gui/us_plot.cpp M gui/us_plot.h Log Message: ----------- Merge branch 'main' into lukas/manual_test/make Commit: 99fc3a66c861b6275cedd397bfd03e34e85d9435 https://github.com/ehb54/ultrascan3/commit/99fc3a66c861b6275cedd397bfd03e34e85d9435 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: A .github/workflows/sphinx-doc-build.yml Log Message: ----------- Add GitHub Actions workflow for Sphinx documentation build Commit: 5fa677c2afd3175fa29a37165561f4125a867c5d https://github.com/ehb54/ultrascan3/commit/5fa677c2afd3175fa29a37165561f4125a867c5d Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .github/workflows/sphinx-doc-build.yml Log Message: ----------- Refactor Sphinx GitHub Actions workflow: replace deprecated problem matcher usage, streamline build commands, and add error handling. Commit: b91a5ae2fecdc63970efdf031426e000eff8cc6e https://github.com/ehb54/ultrascan3/commit/b91a5ae2fecdc63970efdf031426e000eff8cc6e Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: A .github/sphinx-matcher.json Log Message: ----------- Add Sphinx problem matcher configuration for GitHub Actions Commit: 45da34200ce91a23a4f1f8d168e7a1ee612b03b5 https://github.com/ehb54/ultrascan3/commit/45da34200ce91a23a4f1f8d168e7a1ee612b03b5 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .github/workflows/sphinx-doc-build.yml Log Message: ----------- Annotate Sphinx build warnings in GitHub Actions workflow and update qthelp build step for improved error handling. Commit: f3750319ef93a4a4b5f925ffaa38acd1ebb8f6f5 https://github.com/ehb54/ultrascan3/commit/f3750319ef93a4a4b5f925ffaa38acd1ebb8f6f5 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M .github/workflows/sphinx-doc-build.yml Log Message: ----------- Replace custom Sphinx warning annotation script with `sphinx-doc/github-problem-matcher` for streamlined GitHub Actions workflow. Commit: bc2b74fbb9b5698c8269f2d6b060ce420ab6697a https://github.com/ehb54/ultrascan3/commit/bc2b74fbb9b5698c8269f2d6b060ce420ab6697a Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: R .github/sphinx-matcher.json Log Message: ----------- Remove obsolete Sphinx problem matcher configuration from GitHub Actions. Commit: 715a3fd86ec9bdb692b3e1fa0ce393a86548c213 https://github.com/ehb54/ultrascan3/commit/715a3fd86ec9bdb692b3e1fa0ce393a86548c213 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/convert.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/export_legacy.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/second_moment.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst Log Message: ----------- Fix triplicates to triples Commit: f1b1aba77a1f2da432e6262d842221eb275d2dd0 https://github.com/ehb54/ultrascan3/commit/f1b1aba77a1f2da432e6262d842221eb275d2dd0 Author: HabGab Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst A doc/manual/source/_static/images/dmga-save.png A doc/manual/source/_static/images/dmga.png A doc/manual/source/_static/images/dmga_constr.png A doc/manual/source/_static/images/fe_dmga_adv.png M doc/manual/source/buoyancy_editor.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/convert.rst M doc/manual/source/dmga_init.rst M doc/manual/source/dmga_init_constr.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/experiment/range.rst M doc/manual/source/export_legacy.rst A doc/manual/source/fe_match/fe_dmga_adv.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/fe_match/index.rst M doc/manual/source/gmp/gmp_automation.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/index.rst M doc/manual/source/multi-wavelength/mwl_species_fit.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/rmsd_query.rst M doc/manual/source/run_details.rst M doc/manual/source/second_moment.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst M doc/manual/source/xpn_viewer.rst Log Message: ----------- update to latest Commit: ff98f3a480b918b42a59334bc0506f87b59b5a37 https://github.com/ehb54/ultrascan3/commit/ff98f3a480b918b42a59334bc0506f87b59b5a37 Author: HabGab Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: M programs/us_integral/us_delete_models.h Log Message: ----------- first link change - integral Commit: 584135021b461a9f753c2ac63b2f37df4cd85b0b https://github.com/ehb54/ultrascan3/commit/584135021b461a9f753c2ac63b2f37df4cd85b0b Author: HabGab Date: 2026-04-07 (Tue, 07 Apr 2026) Changed paths: A doc/manual/source/_static/images/delseltrip.png M doc/manual/source/common_dialogs.rst M programs/us_experiment/us_experiment_gui_optima.h M programs/us_integral/us_delete_models.h M programs/us_integral/us_integral.h Log Message: ----------- update us_experiment show.help Commit: 8e3da82ae6b7563f455e97718bb1f335a1c9bfcc https://github.com/ehb54/ultrascan3/commit/8e3da82ae6b7563f455e97718bb1f335a1c9bfcc Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-08 (Wed, 08 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_main.rst M doc/manual/source/buffer/buffer_edit.rst M doc/manual/source/buffer/buffer_settings.rst M doc/manual/source/buoyancy_editor.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/convert.rst M doc/manual/source/experiment/import.rst M doc/manual/source/experiment/liveupdate.rst M doc/manual/source/experiment/range.rst M doc/manual/source/export_legacy.rst M doc/manual/source/fe_match/fe_match_main.rst M doc/manual/source/fe_match/fe_match_simulate.rst M doc/manual/source/gmp/gmp_automation.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/multi-wavelength/mwl_species_fit.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/rmsd_query.rst M doc/manual/source/run_details.rst M doc/manual/source/second_moment.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst M doc/manual/source/xpn_viewer.rst Log Message: ----------- Standardize terminology: replace "Triplicates" with "Triples" across documentation for clarity and consistency. Commit: 7128a07267ee0a0fd7913ea221c2cd891b7099a8 https://github.com/ehb54/ultrascan3/commit/7128a07267ee0a0fd7913ea221c2cd891b7099a8 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-08 (Wed, 08 Apr 2026) Changed paths: M test/utils/test_us_help_pages.cpp M test/utils/test_us_regex.cpp Log Message: ----------- Improve test failure messages: use `ADD_FAILURE_AT` for precise file/line annotation and enhance regex and help file error clarity Commit: 9cf710938424ec4c02179f22bb8da50b226085c6 https://github.com/ehb54/ultrascan3/commit/9cf710938424ec4c02179f22bb8da50b226085c6 Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-08 (Wed, 08 Apr 2026) Changed paths: A .github/gtest-us.json M .github/workflows/unit-tests-v2.yml M .github/workflows/unit-tests.yml Log Message: ----------- Add GoogleTest problem matcher to GitHub Actions workflows for enhanced test failure annotation Commit: d849477c413c4de8c709970000b9beed563952aa https://github.com/ehb54/ultrascan3/commit/d849477c413c4de8c709970000b9beed563952aa Author: HabGab Date: 2026-04-08 (Wed, 08 Apr 2026) Changed paths: M programs/us_2dsa/us_2dsa.h M programs/us_config/us_color.cpp M programs/us_config/us_database.cpp M programs/us_config/us_xpnhost.cpp M programs/us_config/us_xpnhost_db.cpp M programs/us_mwlr_viewer/us_mwl_pltctrl.h Log Message: ----------- unit test link updates Commit: ba9907ccbb59086289b70ee897744f22b939a693 https://github.com/ehb54/ultrascan3/commit/ba9907ccbb59086289b70ee897744f22b939a693 Author: HabGab Date: 2026-04-08 (Wed, 08 Apr 2026) Changed paths: A doc/manual/source/_static/images/select_prefilt.png M doc/manual/source/common_dialogs.rst M gui/us_select_edits.h M gui/us_select_item.h M gui/us_select_runs.h M programs/us_config/us_admin.cpp M programs/us_config/us_font.cpp Log Message: ----------- unit tests help link update Commit: 9a107befce5878fa969190700c2a2f6ef48ce068 https://github.com/ehb54/ultrascan3/commit/9a107befce5878fa969190700c2a2f6ef48ce068 Author: HabGab Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: A doc/manual/source/analysprof_general.rst M doc/manual/source/astfem_sim.rst M doc/manual/source/convert.rst A doc/manual/source/ramp_data.rst A doc/manual/source/us_administrator.rst M doc/manual/source/us_edit.rst M programs/us_analysis_profile/us_analysis_profile.h M programs/us_config/us_advanced.cpp M programs/us_edit/us_edit_scan.h M programs/us_edit/us_select_lambdas.h M programs/us_ramp/us_experiment_gui_ra.h Log Message: ----------- updates Commit: 6fe43510daa8d32555c611669eaa32ab11da07ff https://github.com/ehb54/ultrascan3/commit/6fe43510daa8d32555c611669eaa32ab11da07ff Author: HabGab Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: A doc/manual/source/_static/images/edit_exclude_scan.png A doc/manual/source/_static/images/edit_scan.png Log Message: ----------- images Commit: 290b3ed2436ce1c133fb54567579f869c3e2ea70 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programs/us_edit/us_exclude_profile.h M programs/us_fematch/us_adv_dmgamc.h M programs/us_globalequil/us_eqfit_control.h M programs/us_globalequil/us_eqmodel_control.h M programs/us_globalequil/us_model_adpars.h M programs/us_globalequil/us_model_select.h M programs/us_pcsa/us_mlplot.h Log Message: ----------- unit test Commit: c8515e182cb1cddab6d51258efd8a99f97c8c667 https://github.com/ehb54/ultrascan3/commit/c8515e182cb1cddab6d51258efd8a99f97c8c667 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: M .github/gtest-us.json Log Message: ----------- Fix matcher Commit: ff35eb4d37eed1d9a2fdd2200d69a00adfcdb41c https://github.com/ehb54/ultrascan3/commit/ff35eb4d37eed1d9a2fdd2200d69a00adfcdb41c Author: HabGab Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: M doc/manual/source/2dsa/2dsa_analys.rst M doc/manual/source/2dsa/index.rst M doc/manual/source/analyte/analyte_edit.rst M doc/manual/source/analyte/analyte_select.rst M doc/manual/source/astfem_sim.rst M doc/manual/source/buoyancy_editor.rst M doc/manual/source/combine_models.rst M doc/manual/source/common_dialogs.rst M doc/manual/source/components.rst M doc/manual/source/config.rst M doc/manual/source/convert.rst M doc/manual/source/dens_match.rst M doc/manual/source/dmga_init.rst M doc/manual/source/experiment/cells.rst M doc/manual/source/experiment/optics.rst M doc/manual/source/experiment/range.rst M doc/manual/source/experiment/submit.rst M doc/manual/source/export_legacy.rst M doc/manual/source/idist_combine.rst M doc/manual/source/manage_data.rst M doc/manual/source/model_editor.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_adv.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/pseudo3d.rst M doc/manual/source/rmsd_query.rst M doc/manual/source/rotor.rst M doc/manual/source/solutions/solution_edit.rst M 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M programs/us_globalequil/us_eqfit_control.h M programs/us_globalequil/us_eqmodel_control.h M programs/us_globalequil/us_model_adpars.h M programs/us_globalequil/us_model_select.h M programs/us_integral/us_delete_models.h M programs/us_integral/us_integral.h M programs/us_mwl_species_fit/us_mwl_species_fit.h M programs/us_mwl_species_sim/us_mwl_species_sim.h M programs/us_mwl_spectra/us_mwl_spectra.h M programs/us_mwl_spectra/us_mwls_pltctl.h M programs/us_mwlr_viewer/us_mwl_pltctrl.h M programs/us_mwlr_viewer/us_mwlr_viewer.h M programs/us_pcsa/us_adv_analysis_pc.h M programs/us_pcsa/us_analysis_control_pc.h M programs/us_pcsa/us_mlplot.h M programs/us_pcsa/us_mrecs_loader.h M programs/us_pcsa/us_pcsa.h M programs/us_pcsa/us_plot_control_pc.h M programs/us_pcsa/us_rpscan.h M programs/us_pseudo3d_combine/us_pseudo3d_combine.h M programs/us_pseudo3d_combine/us_remove_distros.h M programs/us_ramp/us_experiment_gui_ra.h M programs/us_ramp/us_select_triples_ra.h M programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_vhw_combine/us_vhwc_pltctl.h A test/utils/test_us_help_pages.cpp M test/utils/test_us_regex.cpp M utils/CMakeLists.txt M utils/us_buffer.h M utils/us_extern.h Log Message: ----------- Merge pull request #408 from ehb54/lukas/manual_test/make Enhance documentation build system and improve Unicode handling Commit: 29678f933d80ecac003838e4bde2c37a65512482 https://github.com/ehb54/ultrascan3/commit/29678f933d80ecac003838e4bde2c37a65512482 Author: alexsav815 Date: 2026-04-09 (Thu, 09 Apr 2026) Changed paths: M utils/us_run_protocol.cpp Log Message: ----------- GMP -- additional check for the protocol internals equality before submitting GMP run: check for operator (and revs & approvers)... Commit: abf6f6f3682a1676d7d1e8f7dd0f02419fb1954f https://github.com/ehb54/ultrascan3/commit/abf6f6f3682a1676d7d1e8f7dd0f02419fb1954f Author: alexsav815 Date: 2026-04-15 (Wed, 15 Apr 2026) Changed paths: M utils/us_run_protocol.cpp Log Message: ----------- Merge pull request #409 from ehb54/alexey-dev-issue814 GMP -- additional check for the protocol internals equality before submitting GMP runs: operator(s) Commit: e1d3e1c1e38cb70b1f3853441f6c73aa9fbeea5c https://github.com/ehb54/ultrascan3/commit/e1d3e1c1e38cb70b1f3853441f6c73aa9fbeea5c Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-17 (Fri, 17 Apr 2026) Changed paths: A .github/gtest-us.json A .github/workflows/bump-version.yml M .github/workflows/codeql-analysis.yml M .github/workflows/doc-build.yml A .github/workflows/sphinx-doc-build.yml M .github/workflows/unit-tests-v2.yml M .github/workflows/unit-tests.yml M .gitignore M CMakeLists.txt M CMakePresets.json M LICENSE.txt R README.linguist M README.manual 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doc/manual/source/vhw_enhanced.rst A doc/manual/source/xpn_viewer.rst R doc/manual/template.img.body R doc/manual/tidy.conf R doc/manual/time_derivative.body R doc/manual/ultrascan3.txt R doc/manual/us_buffer.body R doc/manual/us_edit.body R doc/manual/us_edit_mwl.body R doc/manual/us_equiltime.body R doc/manual/us_fds_filemanager.body R doc/manual/us_investigator.body R doc/manual/us_modelmetrics.body R doc/manual/us_project.body R doc/manual/us_solution.body R doc/manual/uscol.body R doc/manual/uscolor2.body R doc/manual/usfont.body R doc/manual/usfont2.body R doc/manual/vhw_combine.body R doc/manual/vhw_distrib_plot.body R doc/manual/vhw_enhanced.body R doc/manual/wrapped-images.lst M etc/etc_belongs_list.txt A etc/icons/make-icons.sh A etc/icons/us3-icon-master-512.png R etc/us3-GMP-icon-128x128.ico M etc/us3-GMP-icon-128x128.png R etc/us3-GMP-icon-128x128.xpm R etc/us3-GMP-icon-32x32.ico R etc/us3-GMP-icon-32x32.png R etc/us3-GMP-icon-32x32.xpm R etc/us3-GMP-icon-48x48.ico R 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gui/us_gui_util.cpp M gui/us_help.cpp M gui/us_images.cpp M gui/us_images.h M gui/us_intensity.h M gui/us_investigator.cpp M gui/us_license.cpp M gui/us_load_auc.h M gui/us_minimize.cpp M gui/us_model_gui.cpp M gui/us_model_loader.cpp M gui/us_model_loader.h M gui/us_mwl_data.cpp M gui/us_new_spectrum.cpp M gui/us_new_spectrum.h M gui/us_passwd.cpp M gui/us_plot.cpp M gui/us_plot.h M gui/us_plot3d.cpp M gui/us_plot3d.h M gui/us_predict1.cpp M gui/us_predict1.h M gui/us_project_gui.h M gui/us_report_gui.cpp M gui/us_report_gui.h M gui/us_run_details2.cpp M gui/us_sassoc.cpp M gui/us_sassoc.h M gui/us_select_edits.h M gui/us_select_item.h M gui/us_select_runs.h M gui/us_select_triples.h M gui/us_selectbox.h M gui/us_solution_gui.cpp M gui/us_solution_gui.h M gui/us_spectrodata.cpp M gui/us_spectrodata.h M gui/us_widgets.h M makeall.sh A pkg/macos/README.md A pkg/macos/component.plist A pkg/macos/distribution.xml.in A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3 A pkg/macos/postinstall A pkg/macos/preinstall A pkg/macos/resources/Welcome.txt.in A pkg/macos/resources/background.png A pkg/macos/ultrascan_sysctl.plist A pkg/macos/uninstall.sh M programs/CMakeLists.txt M programs/main1.inc M programs/us/CMakeLists.txt M programs/us/revision.sh M programs/us/us.cpp M programs/us/us.pro R programs/us/us_de_DE.ts M programs/us_2dsa/us_2dsa.cpp M programs/us_2dsa/us_2dsa.h M programs/us_2dsa/us_adv_analysis_2d.h M programs/us_2dsa/us_analysis_control_2d.h M programs/us_2dsa/us_plot_control_2d.h M programs/us_2dsa/us_show_norm.cpp M programs/us_abde/us_abde_main.cpp M programs/us_abde/us_norm_profile.cpp M programs/us_abde/us_norm_profile.h M programs/us_analysis_profile/us_analysis_profile.cpp M programs/us_analysis_profile/us_analysis_profile.h M programs/us_analysis_profile/us_anapro_utils.cpp M programs/us_astfem_sim/us_astfem_sim.cpp M programs/us_astfem_sim/us_clipdata.h M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp M programs/us_autoflow_analysis/CMakeLists.txt M programs/us_autoflow_analysis/us_autoflow_analysis.cpp M programs/us_autoflow_analysis/us_autoflow_analysis.h M programs/us_buoyancy/us_buoyancy.cpp M programs/us_buoyancy/us_buoyancy.h M programs/us_colorgradient/us_colorgradient.cpp M programs/us_com_project/CMakeLists.txt M programs/us_com_project/us_com_project_gui.cpp M programs/us_com_project/us_com_project_gui.h M programs/us_com_project_academic/CMakeLists.txt M programs/us_combine_models/us_combine_models.cpp M programs/us_config/us_admin.cpp M programs/us_config/us_advanced.cpp M programs/us_config/us_color.cpp M programs/us_config/us_config.pro M programs/us_config/us_database.cpp M programs/us_config/us_font.cpp M programs/us_config/us_font.h M programs/us_config/us_newxpnhost_db.cpp M programs/us_config/us_xpnhost.cpp M programs/us_config/us_xpnhost_db.cpp M programs/us_dcdt/us_dcdt.cpp M programs/us_dcdt/us_dcdt.h M programs/us_ddist_combine/us_ddist_combine.cpp M programs/us_ddist_combine/us_ddist_combine.h M programs/us_density_match/us_density_match.cpp M programs/us_density_match/us_model_params.h M programs/us_density_match/us_remove_models.h M programs/us_dmga_init/us_dmga_init.cpp M programs/us_edit/us_edit.cpp M programs/us_edit/us_edit.h M programs/us_edit/us_edit_scan.cpp M programs/us_edit/us_edit_scan.h M programs/us_edit/us_exclude_profile.h M programs/us_edit/us_select_lambdas.h M programs/us_esigner_gmp/us_esigner_gmp.cpp M programs/us_esigner_gmp/us_esigner_gmp.h M programs/us_experiment/us_exp_utils.cpp M programs/us_experiment/us_experiment_gui_optima.cpp M programs/us_experiment/us_experiment_gui_optima.h M programs/us_experiment/us_proto_ranges.cpp M programs/us_export_legacy/us_export.cpp M programs/us_fds_filemanager/us_fds_filemanager.cpp M programs/us_fematch/CMakeLists.txt M programs/us_fematch/us_adv_dmgamc.h M programs/us_fematch/us_advanced_fem.h M programs/us_fematch/us_fematch.cpp M programs/us_fematch/us_fematch.h M programs/us_fematch/us_plot_control_fem.cpp M programs/us_fematch/us_plot_control_fem.h M programs/us_fit_meniscus/CMakeLists.txt M programs/us_fit_meniscus/us_fit_meniscus.cpp M programs/us_fit_meniscus/us_fit_meniscus.h M programs/us_ga_init/us_ga_init.cpp M programs/us_ga_init/us_ga_init.h M programs/us_ga_init/us_solutedata.cpp M programs/us_globalequil/us_eqfit_control.cpp M programs/us_globalequil/us_eqfit_control.h M programs/us_globalequil/us_eqhistogram.cpp M programs/us_globalequil/us_eqmath.cpp M programs/us_globalequil/us_eqmodel_control.cpp M programs/us_globalequil/us_eqmodel_control.h M programs/us_globalequil/us_eqreporter.cpp M programs/us_globalequil/us_fit_worker.cpp M programs/us_globalequil/us_globalequil.cpp M programs/us_globalequil/us_globalequil.h M programs/us_globalequil/us_model_adpars.h M programs/us_globalequil/us_model_select.h M programs/us_grid_editor/us_grid_editor.cpp M programs/us_helpdaemon/us_helpdaemon.cpp M programs/us_integral/us_delete_models.h M programs/us_integral/us_integral.cpp M programs/us_integral/us_integral.h M programs/us_legacy_converter/us_legacy_converter.cpp M programs/us_legacy_converter/us_legacy_converter.h M programs/us_manage_data/us_data_model.cpp M programs/us_modelmetrics/us_modelmetrics.cpp M programs/us_mpi_analysis/2dsa_worker.cpp M programs/us_mpi_analysis/CMakeLists.txt M programs/us_mpi_analysis/pcsa_worker.cpp M programs/us_mpi_analysis/revision.sh M programs/us_mpi_analysis/us_mpi_analysis.cpp M programs/us_mwl_species_fit/CMakeLists.txt M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h M programs/us_mwl_species_fit/us_mwl_species_fit.cpp M programs/us_mwl_species_fit/us_mwl_species_fit.h M programs/us_mwl_species_sim/us_mwl_species_sim.cpp M programs/us_mwl_species_sim/us_mwl_species_sim.h M programs/us_mwl_spectra/us_mwl_spectra.cpp M programs/us_mwl_spectra/us_mwl_spectra.h M programs/us_mwl_spectra/us_mwls_pltctl.cpp M programs/us_mwl_spectra/us_mwls_pltctl.h M programs/us_mwlr_viewer/us_mwl_pltctrl.cpp M programs/us_mwlr_viewer/us_mwl_pltctrl.h M programs/us_mwlr_viewer/us_mwlr_viewer.cpp M programs/us_mwlr_viewer/us_mwlr_viewer.h M programs/us_pcsa/us_adv_analysis_pc.h M programs/us_pcsa/us_analysis_control_pc.h M programs/us_pcsa/us_mlplot.cpp M programs/us_pcsa/us_mlplot.h M programs/us_pcsa/us_mrecs_loader.cpp M programs/us_pcsa/us_mrecs_loader.h M programs/us_pcsa/us_pcsa.cpp M programs/us_pcsa/us_pcsa.h M programs/us_pcsa/us_plot_control_pc.h M programs/us_pcsa/us_rpscan.cpp M programs/us_pcsa/us_rpscan.h M programs/us_protocol_dev/CMakeLists.txt M programs/us_protocol_dev/us_protocol_dev_gui.h M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.h M programs/us_pseudo3d_combine/us_remove_distros.h M programs/us_pseudo_absorbance/us_add_refScan.cpp M programs/us_pseudo_absorbance/us_convert_scan.cpp M programs/us_pseudo_absorbance/us_convert_scan.h M programs/us_pseudo_absorbance/us_pseudo_absorbance.cpp M programs/us_pseudo_absorbance/us_remove_ri.cpp M programs/us_pseudo_absorbance/us_remove_ri.h M programs/us_query_rmsd/CMakeLists.txt M programs/us_query_rmsd/us_query_rmsd.cpp M programs/us_query_rmsd/us_query_rmsd.h M programs/us_ramp/us_experiment_gui_ra.h M programs/us_ramp/us_experiment_ra.cpp M programs/us_ramp/us_get_dbrun_ra.cpp M programs/us_ramp/us_mwlramp.cpp M programs/us_ramp/us_ramp.cpp M programs/us_ramp/us_ramp_gui.cpp M programs/us_ramp/us_ramp_gui.h M programs/us_ramp/us_select_triples_ra.h M programs/us_reporter_gmp/CMakeLists.txt M programs/us_reporter_gmp/us_reporter_gmp.cpp M programs/us_reporter_gmp/us_reporter_gmp.h M programs/us_rotor_calibration/us_rotor_calibration.cpp M programs/us_rotor_calibration/us_rotor_calibration.h M programs/us_second_moment/us_second_moment.cpp M programs/us_second_moment/us_second_moment.h M programs/us_spectrum/us_spectrum.cpp M programs/us_spectrum/us_spectrum.h M programs/us_vhw_combine/us_vhw_combine.cpp M programs/us_vhw_combine/us_vhwc_pltctl.cpp M programs/us_vhw_combine/us_vhwc_pltctl.h M programs/us_vhw_enhanced/us_distrib_plot.cpp M programs/us_vhw_enhanced/us_vhw_enhanced.cpp M programs/us_vhw_enhanced/us_vhw_enhanced.h M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp M programs/us_xpn_viewer/us_xpn_viewer_gui.h R propignore R proppng R proptext M qmakeall.sh M qwtplot3d/CMakeLists.txt M qwtplot3d/include/qwt3d_io_gl2ps.h M qwtplot3d/include/qwt3d_openglhelper.h M qwtplot3d/include/qwt3d_plot.h M qwtplot3d/include/qwt3d_surfaceplot.h R qwtplot3d/lingua_de.ts M qwtplot3d/qwtplot3d.pro M qwtplot3d/src/qwt3d_io.cpp M qwtplot3d/src/qwt3d_io_gl2ps.cpp M qwtplot3d/src/qwt3d_label.cpp M qwtplot3d/src/qwt3d_lighting.cpp M qwtplot3d/src/qwt3d_movements.cpp M qwtplot3d/src/qwt3d_plot.cpp M qwtplot3d/src/qwt3d_surfaceplot.cpp A scripts/bootstrap-linux.sh A scripts/bootstrap-macos.sh A scripts/bootstrap-windows.ps1 A scripts/bootstrap.bat A scripts/build.bat A scripts/build.ps1 M scripts/build.sh M test/utils/CMakeLists.txt M test/utils/test_us_ana_profile.cpp M test/utils/test_us_crypto.cpp A test/utils/test_us_help_pages.cpp A test/utils/test_us_regex.cpp M test/utils/test_us_simparms.cpp M test/utils/test_us_time_state.cpp A us-build M utils/CMakeLists.txt M utils/ius_db2.h M utils/libus_utils.pro M utils/us_ana_profile.cpp M utils/us_ana_profile.h M utils/us_analyte.cpp M utils/us_analyte.h M utils/us_archive.cpp M utils/us_archive.h M utils/us_astfem_math.cpp M utils/us_astfem_math.h M utils/us_astfem_rsa.cpp M utils/us_astfem_rsa.h M utils/us_buffer.cpp M utils/us_buffer.h M utils/us_cfa_data.cpp M utils/us_cfa_data.h M utils/us_constants.cpp M utils/us_constants.h M utils/us_convert.cpp M utils/us_convert.h M utils/us_convertio.cpp M utils/us_convertio.h M utils/us_crc.cpp M utils/us_crc.h M utils/us_crypto.cpp M utils/us_crypto.h M utils/us_csv_data.cpp M utils/us_csv_data.h M utils/us_dataIO.cpp M utils/us_dataIO.h M utils/us_datafiles.cpp M utils/us_datafiles.h M utils/us_db2.cpp M utils/us_db2.h M utils/us_dmga_constr.cpp M utils/us_eprofile.h M utils/us_experiment.cpp M utils/us_experiment.h M utils/us_extern.h M utils/us_geturl.cpp M utils/us_geturl.h M utils/us_global.cpp M utils/us_global.h M utils/us_gzip.cpp M utils/us_gzip.h M utils/us_hardware.h M utils/us_http_post.h M utils/us_hydrosim.cpp M utils/us_hydrosim.h M utils/us_lamm_astfvm.cpp M utils/us_lamm_astfvm.h M utils/us_license_t.cpp M utils/us_license_t.h M utils/us_link_ssl.cpp M utils/us_link_ssl.h M utils/us_lm.cpp M utils/us_local_server.cpp M utils/us_local_server.h M utils/us_math2.cpp M utils/us_math2.h M utils/us_matrix.cpp M utils/us_matrix.h M utils/us_memory.cpp M utils/us_memory.h M utils/us_model.cpp M utils/us_model.h M utils/us_noise.cpp M utils/us_noise.h M utils/us_pcsa_modelrec.cpp M utils/us_pcsa_modelrec.h M utils/us_project.cpp M utils/us_protocol_util.cpp M utils/us_protocol_util.h M utils/us_report.cpp M utils/us_report.h M utils/us_report_gmp.cpp M utils/us_rotor.cpp M utils/us_run_protocol.cpp M utils/us_run_protocol.h M utils/us_settings.cpp M utils/us_settings.h M utils/us_simparms.cpp M utils/us_simparms.h M utils/us_sleep.h M utils/us_solute.cpp M utils/us_solute.h M utils/us_solution.cpp M utils/us_solution.h M utils/us_solution_vals.h M utils/us_solve_sim.cpp M utils/us_stiffbase.cpp M utils/us_stiffbase.h M utils/us_tar.cpp M utils/us_tar.h M utils/us_time_state.cpp M utils/us_time_state.h M utils/us_timer.cpp M utils/us_timer.h M utils/us_util.cpp M utils/us_util.h A utils/us_utils_qt.h M utils/us_vector.cpp M utils/us_vector.h M utils/us_xpn_data.cpp M utils/us_xpn_data.h M utils/us_zsolute.cpp M utils/us_zsolute.h R vcpkg M vcpkg.json Log Message: ----------- Merge remote-tracking branch 'refs/remotes/origin/main' into somo-qt6 Commit: eb1857dd246ba9094651066c369073bed739772c https://github.com/ehb54/ultrascan3/commit/eb1857dd246ba9094651066c369073bed739772c Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-26 (Sun, 26 Apr 2026) Changed paths: M us_somo/develop/include/us3_extern.h M us_somo/develop/include/us3i_extern.h Log Message: ----------- Refactor symbol export/import macros: standardize definitions and add detailed documentation for improved clarity and platform compatibility. 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Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: ebfc7447f40b93d96b1824535c02cfd40600c9fc https://github.com/ehb54/ultrascan3/commit/ebfc7447f40b93d96b1824535c02cfd40600c9fc Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-26 (Sun, 26 Apr 2026) Changed paths: R us_somo/develop/src/qwt/scrollbar.h R us_somo/develop/src/qwt/scrollzoomer.h Log Message: ----------- Remove `scrollbar.h` and `scrollzoomer.h`: delete unused headers to clean up the codebase. 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Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Commit: b3a1d8d15acbb1ea663c1ef4761164f630e7c77e https://github.com/ehb54/ultrascan3/commit/b3a1d8d15acbb1ea663c1ef4761164f630e7c77e Author: doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-26 (Sun, 26 Apr 2026) Changed paths: M CMakeLists.txt Log Message: ----------- Add `us_somo/develop` to CMake build for modular structure expansion Signed-off-by: doluk <69309597+doluk at users.noreply.github.com> Compare: https://github.com/ehb54/ultrascan3/compare/8886d756072f...b3a1d8d15acb To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Sun Apr 26 05:12:53 2026 From: noreply at github.com (Lukas Dobler) Date: Sun, 26 Apr 2026 04:12:53 -0700 Subject: [us-commits] [ehb54/ultrascan3] 77adb0: check new branch Message-ID: Branch: refs/heads/lukas/somo-cmake Home: https://github.com/ehb54/ultrascan3 Commit: 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Commit: 3c2f9d3ede41ffdcd79d070e45afb8a238e729fb https://github.com/ehb54/ultrascan3/commit/3c2f9d3ede41ffdcd79d070e45afb8a238e729fb Author: Doluk <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp Log Message: ----------- Simplify lambda expressions in `us_pseudo3d_combine.cpp` by removing redundant `&` capture. Commit: c20633e9c5e7406950dbc174cae33f60cb8c2d17 https://github.com/ehb54/ultrascan3/commit/c20633e9c5e7406950dbc174cae33f60cb8c2d17 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M doc/manual/source/conf.py Log Message: ----------- Remove future annotations import Removed future annotations import from conf.py. Commit: 60491d8fe675ed9c20c175e16153aa1a2f594186 https://github.com/ehb54/ultrascan3/commit/60491d8fe675ed9c20c175e16153aa1a2f594186 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M .gitignore Log Message: ----------- Add __pycache__ to .gitignore Commit: 2cb09af8870f32c9aa5e3463851c91e6741e0bdd https://github.com/ehb54/ultrascan3/commit/2cb09af8870f32c9aa5e3463851c91e6741e0bdd Author: emre brookes Date: 2026-04-22 (Wed, 22 Apr 2026) Changed paths: M .gitignore M doc/manual/source/conf.py M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page.rst Log Message: ----------- Merge pull request #416 from ehb54/lukas/manual_versioning Standardize formatting and update versioning in manual Commit: eba2b0e533d5a81cad63c0edd5319256ba404cdd https://github.com/ehb54/ultrascan3/commit/eba2b0e533d5a81cad63c0edd5319256ba404cdd Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-22 (Wed, 22 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doc/manual/source/ga_initialize.rst M doc/manual/source/gmp/gmp_automation.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst M doc/manual/source/gmp/gmp_protocol_development.rst M doc/manual/source/grid_editor.rst M doc/manual/source/idist_combine.rst M doc/manual/source/index.rst M doc/manual/source/manage_data.rst M doc/manual/source/multi-wavelength/index.rst M doc/manual/source/multi-wavelength/mwl_species_fit.rst M doc/manual/source/multi-wavelength/mwl_species_sim.rst M doc/manual/source/multi-wavelength/mwl_spectra.rst M doc/manual/source/pcsa/pcsa.rst M doc/manual/source/pcsa/pcsa_analys.rst M doc/manual/source/pcsa/pcsa_results.rst M doc/manual/source/pseudo3d.rst M doc/manual/source/reporter.rst M doc/manual/source/rmsd_query.rst R doc/manual/source/rotor.rst M doc/manual/source/rotor_calibration.rst A doc/manual/source/rotors.rst M doc/manual/source/run_details.rst M doc/manual/source/second_moment.rst M doc/manual/source/simparams.rst M doc/manual/source/solutions/index.rst M doc/manual/source/solutions/solution_edit.rst M doc/manual/source/solutions/solution_new.rst M doc/manual/source/solutions/solution_settings.rst M doc/manual/source/start_page-int.rst M doc/manual/source/start_page-mw.rst M doc/manual/source/start_page-new.rst M doc/manual/source/start_page-rpt.rst M doc/manual/source/start_page.rst M doc/manual/source/time_derivative.rst M doc/manual/source/us_administrator.rst M doc/manual/source/us_buoyancy.rst M doc/manual/source/us_edit.rst M doc/manual/source/us_equiltime.rst M doc/manual/source/us_fds_filemanager.rst M doc/manual/source/us_investigator.rst M doc/manual/source/us_project.rst M doc/manual/source/us_spectrum.rst M doc/manual/source/vhw_combine.rst M doc/manual/source/vhw_enhanced.rst M doc/manual/source/xpn_viewer.rst M gui/us_abstractrotor_gui.h M gui/us_plot.cpp M gui/us_rotor_gui.h M programs/us_2dsa/us_show_norm.cpp M programs/us_density_match/us_density_match.cpp M programs/us_ga_init/us_ga_init.cpp M programs/us_integral/us_integral.cpp M programs/us_modelmetrics/us_modelmetrics.cpp M programs/us_pcsa/us_analysis_control_pc.cpp M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp Log Message: ----------- Merge pull request #418 from ehb54/main update lukas/somo-cmake to main Compare: https://github.com/ehb54/ultrascan3/compare/b3a1d8d15acb...af0e03ca1301 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications From noreply at github.com Mon Apr 27 13:15:49 2026 From: noreply at github.com (Lukas Dobler) Date: Mon, 27 Apr 2026 12:15:49 -0700 Subject: [us-commits] [ehb54/us3_sql] Message-ID: Branch: refs/heads/lukas/aucsol_api Home: https://github.com/ehb54/us3_sql To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/us3_sql/settings/notifications From noreply at github.com Mon Apr 27 13:19:21 2026 From: noreply at github.com (Lukas Dobler) Date: Mon, 27 Apr 2026 12:19:21 -0700 Subject: [us-commits] [ehb54/us3_sql] d9fd3c: Create personal_access_tokens table with indexes Message-ID: Branch: refs/heads/lukas/aucsol_api Home: https://github.com/ehb54/us3_sql Commit: d9fd3c2270250197b33a136883f3bfef4b7f4ae1 https://github.com/ehb54/us3_sql/commit/d9fd3c2270250197b33a136883f3bfef4b7f4ae1 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-27 (Mon, 27 Apr 2026) Changed paths: M us3.sql Log Message: ----------- Create personal_access_tokens table with indexes To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/us3_sql/settings/notifications From noreply at github.com Mon Apr 27 13:26:17 2026 From: noreply at github.com (Lukas Dobler) Date: Mon, 27 Apr 2026 12:26:17 -0700 Subject: [us-commits] [ehb54/us3_sql] b15248: Modify personal_access_tokens table creation and i... Message-ID: Branch: refs/heads/lukas/aucsol_api Home: https://github.com/ehb54/us3_sql Commit: b152481ef2cdd6acb71f9bc6003a7fe8c884f684 https://github.com/ehb54/us3_sql/commit/b152481ef2cdd6acb71f9bc6003a7fe8c884f684 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-27 (Mon, 27 Apr 2026) Changed paths: M us3.sql Log Message: ----------- Modify personal_access_tokens table creation and indexes To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/us3_sql/settings/notifications From noreply at github.com Mon Apr 27 13:46:06 2026 From: noreply at github.com (Lukas Dobler) Date: Mon, 27 Apr 2026 12:46:06 -0700 Subject: [us-commits] [ehb54/us3_sql] d9fd3c: Create personal_access_tokens table with indexes Message-ID: Branch: refs/heads/main Home: https://github.com/ehb54/us3_sql Commit: d9fd3c2270250197b33a136883f3bfef4b7f4ae1 https://github.com/ehb54/us3_sql/commit/d9fd3c2270250197b33a136883f3bfef4b7f4ae1 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-27 (Mon, 27 Apr 2026) Changed paths: M us3.sql Log Message: ----------- Create personal_access_tokens table with indexes Commit: b152481ef2cdd6acb71f9bc6003a7fe8c884f684 https://github.com/ehb54/us3_sql/commit/b152481ef2cdd6acb71f9bc6003a7fe8c884f684 Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-27 (Mon, 27 Apr 2026) Changed paths: M us3.sql Log Message: ----------- Modify personal_access_tokens table creation and indexes Commit: cfbee6d769e36ff78d301878733a98d2fb2b75fe https://github.com/ehb54/us3_sql/commit/cfbee6d769e36ff78d301878733a98d2fb2b75fe Author: Lukas Dobler <69309597+doluk at users.noreply.github.com> Date: 2026-04-27 (Mon, 27 Apr 2026) Changed paths: M us3.sql Log Message: ----------- Merge pull request #30 from ehb54/lukas/aucsol_api Create personal_access_tokens table with indexes Compare: https://github.com/ehb54/us3_sql/compare/9bd2fd6ce0a0...cfbee6d769e3 To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/us3_sql/settings/notifications From noreply at github.com Mon Apr 27 13:46:16 2026 From: noreply at github.com (Lukas Dobler) Date: Mon, 27 Apr 2026 12:46:16 -0700 Subject: [us-commits] [ehb54/us3_sql] Message-ID: Branch: refs/heads/lukas/aucsol_api Home: https://github.com/ehb54/us3_sql To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/us3_sql/settings/notifications From noreply at github.com Thu Apr 30 10:09:15 2026 From: noreply at github.com (emre brookes) Date: Thu, 30 Apr 2026 09:09:15 -0700 Subject: [us-commits] [ehb54/us3lims_newinst] ff70f7: Enable GMP in makeconfig.php Message-ID: Branch: refs/heads/ehb54-issue-825 Home: https://github.com/ehb54/us3lims_newinst Commit: ff70f7919ebd5930ed8d9ea7c64584d2e95defd5 https://github.com/ehb54/us3lims_newinst/commit/ff70f7919ebd5930ed8d9ea7c64584d2e95defd5 Author: emre brookes Date: 2026-04-30 (Thu, 30 Apr 2026) Changed paths: M makeconfig.php Log Message: ----------- Enable GMP in makeconfig.php To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/us3lims_newinst/settings/notifications