[us-commits] [ehb54/ultrascan3] 94b9a5: Update CMakeLists to use `${SPHINX_PROJECT}` varia...

[Lukas Dobler]

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 94b9a553e412fb675ba67eea2c9f665b6207233d
      https://github.com/ehb54/ultrascan3/commit/94b9a553e412fb675ba67eea2c9f665b6207233d
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
    M doc/manual/CMakeLists.txt

  Log Message:
  -----------
  Update CMakeLists to use `${SPHINX_PROJECT}` variables for Qt help file generation paths (`.qhp` and `.qhcp`).

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: e2d7da6bbf9fcc62e4bfa452f5ec19623488611e
      https://github.com/ehb54/ultrascan3/commit/e2d7da6bbf9fcc62e4bfa452f5ec19623488611e
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
    M doc/manual/source/requirements.txt

  Log Message:
  -----------
  Add `sphinxcontrib-qthelp` and `myst-parser` to documentation requirements for Qt help and Markdown support.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 1e69c5071f55b5bc4963bc33c54c1f5978d9a86f
      https://github.com/ehb54/ultrascan3/commit/1e69c5071f55b5bc4963bc33c54c1f5978d9a86f
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
    M doc/manual/source/conf.py

  Log Message:
  -----------
  Enhance Sphinx configuration: add version metadata generation from Git, update QtHelp/HTML output, and refine documentation structure.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 64293373d85c1dd99096806b49351207ccc8fcbd
      https://github.com/ehb54/ultrascan3/commit/64293373d85c1dd99096806b49351207ccc8fcbd
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
    M doc/manual/source/index.rst

  Log Message:
  -----------
  Expand UltraScan-III documentation: add comprehensive structure, improve navigation with toctree captions, and include download link for PDF manual.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 4996aa594c1ed86a6a18b51f4a2e7f2f312ba230
      https://github.com/ehb54/ultrascan3/commit/4996aa594c1ed86a6a18b51f4a2e7f2f312ba230
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

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  Log Message:
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  Expand UltraScan-III documentation: add detailed GMP workflow guides, including protocol development, automation, e-signatures, report generation, and data acquisition.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 518c1ee39c53443282fc68ec37cc855b2e5aa4f0
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  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
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  Log Message:
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  Update Sphinx configuration: adjust LaTeX preamble for header height and standardize document titles across output formats.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 2946f944109702806ad7b25d283b258d3702adfa
      https://github.com/ehb54/ultrascan3/commit/2946f944109702806ad7b25d283b258d3702adfa
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  Date:   2026-04-03 (Fri, 03 Apr 2026)

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  Log Message:
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  Standardize "Optima" capitalization across XPN Viewer documentation.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 34d316c7e97fcdabcf86b0939a85e834d6d878f6
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  Date:   2026-04-03 (Fri, 03 Apr 2026)

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  Log Message:
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  Fix typo in vHW documentation: correct "Wieschet" to "Weischet".

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 56e8463890e60e8501b4233fb88a6dd74f0e39f4
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  Date:   2026-04-03 (Fri, 03 Apr 2026)

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  Log Message:
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  Update Ultrascan-III website URL in documentation.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: ff5165410e579e9e3bf489cf74532942d4dd1b6d
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  Date:   2026-04-03 (Fri, 03 Apr 2026)

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  Log Message:
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  Revise configuration documentation: clarify directory descriptions, standardize terminology, improve debugging/debug level explanations, and update Optima panel section with centered image and corrected details.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 9d89cccbd5d1edac19f5118f9f73b017b4b62768
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  Date:   2026-04-03 (Fri, 03 Apr 2026)

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  Log Message:
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  Fix image filename in import documentation: correct "Triplicate" to "triple".

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 20e6e37595eff7fcd8c617c1ae65f049be8e60f5
      https://github.com/ehb54/ultrascan3/commit/20e6e37595eff7fcd8c617c1ae65f049be8e60f5
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  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
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  Log Message:
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  Add Sphinx transform for auto-generating index entries from section titles.


  Commit: 78763cd74bcca991929a7dc53e314e9e61a755b6
      https://github.com/ehb54/ultrascan3/commit/78763cd74bcca991929a7dc53e314e9e61a755b6
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
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  Log Message:
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  Update Sphinx configuration: add `auto_index` extension and adjust sys.path setup for dynamic module resolution.


  Commit: e67f33a49e896d701d7a71317d8d8b2dcebb45a9
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  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
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  Log Message:
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  Update Optima configuration images in documentation: delete outdated file and revise new image.


  Commit: a0df61141d5869a4c8d57ccdaf8896b84fbf1add
      https://github.com/ehb54/ultrascan3/commit/a0df61141d5869a4c8d57ccdaf8896b84fbf1add
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
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  Log Message:
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  Standardize header formatting in configuration documentation: adjust underline lengths and update section titles for consistency.


  Commit: 20a795daec1d9d2b8a1e99a9522c5b0f39516f9f
      https://github.com/ehb54/ultrascan3/commit/20a795daec1d9d2b8a1e99a9522c5b0f39516f9f
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
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  Log Message:
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  Update Sphinx configuration: fix sys.path insertion to correctly add the current directory.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 7022886ca10e06e291974dd36c40d68886f97592
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  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
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  Log Message:
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  Update doc/manual/source/2dsa/2dsa_adv.rst

Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com>


  Commit: fec01135a70f30bb6fe279c6355c6d8d46e50f02
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  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
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  Log Message:
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  Update doc/manual/source/2dsa/2dsa_analys.rst

Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com>


  Commit: 213c7d1f346ca9afa40c688dc5d4daae4e55d79f
      https://github.com/ehb54/ultrascan3/commit/213c7d1f346ca9afa40c688dc5d4daae4e55d79f
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  Date:   2026-04-04 (Sat, 04 Apr 2026)

  Changed paths:
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  Log Message:
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  Remove unused `custom.css` file and retain only essential styles in `custom.css` for cleaner documentation styling.


  Commit: f31826280b208f87c2044d91ceed9b3b725941b8
      https://github.com/ehb54/ultrascan3/commit/f31826280b208f87c2044d91ceed9b3b725941b8
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-04 (Sat, 04 Apr 2026)

  Changed paths:
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  Log Message:
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  Downscale extremely large images


  Commit: 0d8aa5eb3868f4fa28393c667f367905088267c1
      https://github.com/ehb54/ultrascan3/commit/0d8aa5eb3868f4fa28393c667f367905088267c1
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-04 (Sat, 04 Apr 2026)

  Changed paths:
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  Log Message:
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  Add support for qthelp exclusive css file


  Commit: 50222b23f0a251076777810ba005c924ef2ddb00
      https://github.com/ehb54/ultrascan3/commit/50222b23f0a251076777810ba005c924ef2ddb00
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-04 (Sat, 04 Apr 2026)

  Changed paths:
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  Log Message:
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  Add `qthelp.css` file to define default styling for QtHelp documentation


  Commit: 86fcf7036c1ad44220fbb6544552d2e7458fd76e
      https://github.com/ehb54/ultrascan3/commit/86fcf7036c1ad44220fbb6544552d2e7458fd76e
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-04 (Sat, 04 Apr 2026)

  Changed paths:
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  Log Message:
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  Standardize help text and add debug text options in configuration documentation.


  Commit: 38351d9b483d34b0d464cdc0a02cf4d0c711a5f0
      https://github.com/ehb54/ultrascan3/commit/38351d9b483d34b0d464cdc0a02cf4d0c711a5f0
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-04 (Sat, 04 Apr 2026)

  Changed paths:
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  Log Message:
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  Refine `auto_index` title processing: improve whitespace handling, enhance dimensional notation standardization, and ensure title case consistency.


  Commit: 881728a585525975764e48eb87de544e1a8f5ed6
      https://github.com/ehb54/ultrascan3/commit/881728a585525975764e48eb87de544e1a8f5ed6
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-04 (Sat, 04 Apr 2026)

  Changed paths:
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  Log Message:
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  Standardize section headers and titles in FE Match documentation for consistency and improve formatting.


  Commit: 278eeecf4ee5b0f5e03bbcd8eae65e831f15837b
      https://github.com/ehb54/ultrascan3/commit/278eeecf4ee5b0f5e03bbcd8eae65e831f15837b
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-04 (Sat, 04 Apr 2026)

  Changed paths:
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    M doc/manual/source/vhw_combine.rst
    M doc/manual/source/vhw_distrib_plot.rst
    M doc/manual/source/vhw_enhanced.rst

  Log Message:
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  Standardize "van Holde-Weischet" terminology across documentation for improved consistency.


  Commit: 99bbe83fea89b40008e71864323759b4a75ff8cb
      https://github.com/ehb54/ultrascan3/commit/99bbe83fea89b40008e71864323759b4a75ff8cb
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-04 (Sat, 04 Apr 2026)

  Changed paths:
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    M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst
    M doc/manual/source/pcsa/pcsa_results.rst
    M doc/manual/source/start_page-rpt.rst

  Log Message:
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  Standardize section headers, titles, and dimensional notations in documentation for improved formatting and consistency.


  Commit: 75a2cca73b6cec686f996d57da668814a975dfc6
      https://github.com/ehb54/ultrascan3/commit/75a2cca73b6cec686f996d57da668814a975dfc6
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-04 (Sat, 04 Apr 2026)

  Changed paths:
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  Log Message:
  -----------
  Merge pull request #402 from ehb54/lukas/manual

Add sphinx manual


Compare: https://github.com/ehb54/ultrascan3/compare/e58b784f94dc...75a2cca73b6c

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