[us-commits] [ehb54/ultrascan3] b1fbfb: GMP-dataDisk -- enable centerpiece selection in Ce...

[aaron-auc]

  Branch: refs/heads/800-enhancement-nightly-build-using-vcpkg
  Home:   https://github.com/ehb54/ultrascan3
  Commit: b1fbfbcbd47cd296b70ccd6ac9178c4efd6b4a4e
      https://github.com/ehb54/ultrascan3/commit/b1fbfbcbd47cd296b70ccd6ac9178c4efd6b4a4e
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h

  Log Message:
  -----------
  GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk...


  Commit: a3b6b6a58f4f1d94a9268cc04a014d3ce1a1471e
      https://github.com/ehb54/ultrascan3/commit/a3b6b6a58f4f1d94a9268cc04a014d3ce1a1471e
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp

  Log Message:
  -----------
  [1]GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk...


  Commit: 992f15191ea67cf8c4dc85736429ab5939967d2f
      https://github.com/ehb54/ultrascan3/commit/992f15191ea67cf8c4dc85736429ab5939967d2f
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp

  Log Message:
  -----------
  [2]GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk...


  Commit: 50c4d0f4452a8f5f8052b4e63ae06abb11f8fe89
      https://github.com/ehb54/ultrascan3/commit/50c4d0f4452a8f5f8052b4e63ae06abb11f8fe89
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp

  Log Message:
  -----------
  [3]GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk...


  Commit: abe431ae514b67270d74e84b599ef069673c1164
      https://github.com/ehb54/ultrascan3/commit/abe431ae514b67270d74e84b599ef069673c1164
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  GMP-ABDE -- 4. EDIT points addressed for ticket #792...


  Commit: b1c5c0de414d093440081fca1a975a4e1118a9d1
      https://github.com/ehb54/ultrascan3/commit/b1c5c0de414d093440081fca1a975a4e1118a9d1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [1]GMP-ABDE -- 4. EDIT points addressed for ticket #792...


  Commit: c53782335d3f1e5fc4fc2ea6f97ee3d64c79389b
      https://github.com/ehb54/ultrascan3/commit/c53782335d3f1e5fc4fc2ea6f97ee3d64c79389b
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [2]GMP-ABDE -- 4. EDIT points addressed for ticket #792...


  Commit: 672254d0e59b1e555aa0aa2506e7871bb188c5d4
      https://github.com/ehb54/ultrascan3/commit/672254d0e59b1e555aa0aa2506e7871bb188c5d4
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [3]GMP-ABDE -- 4. EDIT points addressed for ticket #792...


  Commit: 5470c9ac380ea0b9e9e522bcb85e831bf0e466fd
      https://github.com/ehb54/ultrascan3/commit/5470c9ac380ea0b9e9e522bcb85e831bf0e466fd
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M gui/us_solution_gui.cpp
    M gui/us_solution_gui.h

  Log Message:
  -----------
  Enforce analyte for solution in us_solution_gui


  Commit: cb5e49b544fddf3329fd8662619f4a524628a69e
      https://github.com/ehb54/ultrascan3/commit/cb5e49b544fddf3329fd8662619f4a524628a69e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M gui/us_solution_gui.cpp
    M gui/us_solution_gui.h

  Log Message:
  -----------
  Update comments, fix function signature


  Commit: 01301f4fb775a852d7048cf88a308ff8dd796f5a
      https://github.com/ehb54/ultrascan3/commit/01301f4fb775a852d7048cf88a308ff8dd796f5a
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp

  Log Message:
  -----------
  GMP-ABDE -- 5. Analysis addressed for ticket #792...


  Commit: 3ba588420b506827b73516e8dfa8cd4ae9b2ff28
      https://github.com/ehb54/ultrascan3/commit/3ba588420b506827b73516e8dfa8cd4ae9b2ff28
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp

  Log Message:
  -----------
  [2]GMP-ABDE -- 5. Analysis addressed for ticket #792...


  Commit: ad1ceab5b0c51349e506ad4feebf2d0e9442b18f
      https://github.com/ehb54/ultrascan3/commit/ad1ceab5b0c51349e506ad4feebf2d0e9442b18f
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-21 (Sat, 21 Mar 2026)

  Changed paths:
    M gui/us_solution_gui.cpp

  Log Message:
  -----------
  Show warning before accepting a solution without analyte or common vbar


  Commit: 7bfe32ca6b7830a5b30fc3e995feb35daccc7460
      https://github.com/ehb54/ultrascan3/commit/7bfe32ca6b7830a5b30fc3e995feb35daccc7460
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-21 (Sat, 21 Mar 2026)

  Changed paths:
    M utils/us_astfem_rsa.cpp

  Log Message:
  -----------
  Add band_forming check for low concentration flag


  Commit: fb3b2bbbe972a00864dd68b72b5da64234516056
      https://github.com/ehb54/ultrascan3/commit/fb3b2bbbe972a00864dd68b72b5da64234516056
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-21 (Sat, 21 Mar 2026)

  Changed paths:
    M programs/us_astfem_sim/us_astfem_sim.cpp

  Log Message:
  -----------
  Fix y-axis scale for band-forming plots


  Commit: aba103e8cab9d71929941aa888ae3aae0872e049
      https://github.com/ehb54/ultrascan3/commit/aba103e8cab9d71929941aa888ae3aae0872e049
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-24 (Tue, 24 Mar 2026)

  Changed paths:
    M .github/workflows/bump-version.yml
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    M LICENSE.txt
    M README.manual
    M admin/cmake/GenerateVersion.cmake
    A admin/cmake/README.md
    A admin/cmake/packaging/README.md
    A admin/cmake/packaging/linux/LinuxDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcPkg.cmake
    A admin/cmake/packaging/linux/LinuxPkg.cmake
    A admin/cmake/packaging/macos/MacDeploy.cmake
    A admin/cmake/packaging/macos/MacHpcDeploy.cmake
    A admin/cmake/packaging/macos/MacHpcPkg.cmake
    A admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
    A admin/cmake/packaging/macos/MacOsPkg.cmake
    A admin/cmake/packaging/macos/StageAssistantDev.cmake
    A admin/cmake/packaging/windows/WinDeploy.cmake
    A admin/cmake/packaging/windows/WinPkg.cmake
    A admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
    M admin/cmake/toolchain.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/fix-arm64-no-fpu-neon64.patch
    A buildsys/vcpkg/overlay-ports/mpg123/have-fpu.diff
    A buildsys/vcpkg/overlay-ports/mpg123/pkgconfig.diff
    A buildsys/vcpkg/overlay-ports/mpg123/portfile.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/vcpkg.json
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
    A buildsys/vcpkg/overlay-ports/qttools/port.data.cmake
    A buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat
    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
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    A doc/manual/source/_static/css/custom.css
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    A doc/manual/source/conf.py
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    A doc/manual/source/requirements.txt
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    M gui/CMakeLists.txt
    M gui/us_help.cpp
    M makeall.sh
    A pkg/macos/README.md
    A pkg/macos/component.plist
    A pkg/macos/distribution.xml.in
    A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist
    A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3
    A pkg/macos/postinstall
    A pkg/macos/preinstall
    A pkg/macos/resources/Welcome.txt.in
    A pkg/macos/resources/background.png
    A pkg/macos/ultrascan_sysctl.plist
    A pkg/macos/uninstall.sh
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us/revision.sh
    M programs/us/us.cpp
    M programs/us_helpdaemon/us_helpdaemon.cpp
    M programs/us_mpi_analysis/2dsa_worker.cpp
    M programs/us_mpi_analysis/CMakeLists.txt
    M programs/us_mpi_analysis/pcsa_worker.cpp
    M programs/us_mpi_analysis/revision.sh
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M qwtplot3d/CMakeLists.txt
    A scripts/bootstrap-linux.sh
    A scripts/bootstrap-macos.sh
    A scripts/bootstrap-windows.ps1
    A scripts/bootstrap.bat
    M scripts/build.bat
    M scripts/build.ps1
    M scripts/build.sh
    A us-build
    M utils/CMakeLists.txt
    M utils/us_memory.cpp
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_solution_analyte


  Commit: aece3e3e7171e4b42fde89c87820aa518fb4315c
      https://github.com/ehb54/ultrascan3/commit/aece3e3e7171e4b42fde89c87820aa518fb4315c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-24 (Tue, 24 Mar 2026)

  Changed paths:
    M .github/workflows/bump-version.yml
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    M LICENSE.txt
    M README.manual
    M admin/cmake/GenerateVersion.cmake
    A admin/cmake/README.md
    A admin/cmake/packaging/README.md
    A admin/cmake/packaging/linux/LinuxDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcPkg.cmake
    A admin/cmake/packaging/linux/LinuxPkg.cmake
    A admin/cmake/packaging/macos/MacDeploy.cmake
    A admin/cmake/packaging/macos/MacHpcDeploy.cmake
    A admin/cmake/packaging/macos/MacHpcPkg.cmake
    A admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
    A admin/cmake/packaging/macos/MacOsPkg.cmake
    A admin/cmake/packaging/macos/StageAssistantDev.cmake
    A admin/cmake/packaging/windows/WinDeploy.cmake
    A admin/cmake/packaging/windows/WinPkg.cmake
    A admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
    M admin/cmake/toolchain.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/fix-arm64-no-fpu-neon64.patch
    A buildsys/vcpkg/overlay-ports/mpg123/have-fpu.diff
    A buildsys/vcpkg/overlay-ports/mpg123/pkgconfig.diff
    A buildsys/vcpkg/overlay-ports/mpg123/portfile.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/vcpkg.json
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
    A buildsys/vcpkg/overlay-ports/qttools/port.data.cmake
    A buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat
    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
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    M doc/manual/CMakeLists.txt
    M doc/manual/Makefile
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    A doc/manual/source/_static/css/custom.css
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    A doc/manual/source/conf.py
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    R doc/manual/template.img.body
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    M gui/CMakeLists.txt
    M gui/us_help.cpp
    M makeall.sh
    A pkg/macos/README.md
    A pkg/macos/component.plist
    A pkg/macos/distribution.xml.in
    A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist
    A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3
    A pkg/macos/postinstall
    A pkg/macos/preinstall
    A pkg/macos/resources/Welcome.txt.in
    A pkg/macos/resources/background.png
    A pkg/macos/ultrascan_sysctl.plist
    A pkg/macos/uninstall.sh
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us/revision.sh
    M programs/us/us.cpp
    M programs/us_helpdaemon/us_helpdaemon.cpp
    M programs/us_mpi_analysis/2dsa_worker.cpp
    M programs/us_mpi_analysis/CMakeLists.txt
    M programs/us_mpi_analysis/pcsa_worker.cpp
    M programs/us_mpi_analysis/revision.sh
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M qwtplot3d/CMakeLists.txt
    A scripts/bootstrap-linux.sh
    A scripts/bootstrap-macos.sh
    A scripts/bootstrap-windows.ps1
    A scripts/bootstrap.bat
    M scripts/build.bat
    M scripts/build.ps1
    M scripts/build.sh
    A us-build
    M utils/CMakeLists.txt
    M utils/us_memory.cpp
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_astfem_sim_bfe_fix


  Commit: e219670a84259a14eabcbd6567f410caa19460e4
      https://github.com/ehb54/ultrascan3/commit/e219670a84259a14eabcbd6567f410caa19460e4
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-26 (Thu, 26 Mar 2026)

  Changed paths:
    M makeall.sh

  Log Message:
  -----------
  Fix makeall.sh permissions


  Commit: ffbfc46c1f6425db8f285c8ebfe83093848eb1b6
      https://github.com/ehb54/ultrascan3/commit/ffbfc46c1f6425db8f285c8ebfe83093848eb1b6
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-26 (Thu, 26 Mar 2026)

  Changed paths:
    M qmakeall.sh

  Log Message:
  -----------
  Fix qmakeall.sh permissions


  Commit: ce69cccd373c62d3682696c7c1e3afbec47ca21c
      https://github.com/ehb54/ultrascan3/commit/ce69cccd373c62d3682696c7c1e3afbec47ca21c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-27 (Fri, 27 Mar 2026)

  Changed paths:
    M gui/us_solution_gui.cpp
    M gui/us_solution_gui.h

  Log Message:
  -----------
  Merge pull request #397 from ehb54/lukas/us_solution_analyte

Enforce analyte for solution in us_solution_gui


  Commit: cdf7099448e0de34a4e877280839f6acfacf5596
      https://github.com/ehb54/ultrascan3/commit/cdf7099448e0de34a4e877280839f6acfacf5596
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-27 (Fri, 27 Mar 2026)

  Changed paths:
    M gui/us_solution_gui.cpp
    M gui/us_solution_gui.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_astfem_sim_bfe_fix


  Commit: b543a92af379330a545e7dcc63e12daaf3d45239
      https://github.com/ehb54/ultrascan3/commit/b543a92af379330a545e7dcc63e12daaf3d45239
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-27 (Fri, 27 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  GMP-ABDE -- 4. EDIT typo fixed...


  Commit: abf971e0666fcec75923b6219b9033864ede6e45
      https://github.com/ehb54/ultrascan3/commit/abf971e0666fcec75923b6219b9033864ede6e45
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-27 (Fri, 27 Mar 2026)

  Changed paths:
    M makeall.sh
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M qmakeall.sh
    M utils/us_astfem_rsa.cpp

  Log Message:
  -----------
  Merge pull request #399 from ehb54/lukas/us_astfem_sim_bfe_fix

Add band-forming check and fix y-axis scale for plots


  Commit: 407aa2fbe647825650959edafde01a47e49ac0a4
      https://github.com/ehb54/ultrascan3/commit/407aa2fbe647825650959edafde01a47e49ac0a4
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-27 (Fri, 27 Mar 2026)

  Changed paths:
    M .github/workflows/bump-version.yml
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    M LICENSE.txt
    M README.manual
    M admin/cmake/GenerateVersion.cmake
    A admin/cmake/README.md
    A admin/cmake/packaging/README.md
    A admin/cmake/packaging/linux/LinuxDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcPkg.cmake
    A admin/cmake/packaging/linux/LinuxPkg.cmake
    A admin/cmake/packaging/macos/MacDeploy.cmake
    A admin/cmake/packaging/macos/MacHpcDeploy.cmake
    A admin/cmake/packaging/macos/MacHpcPkg.cmake
    A admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
    A admin/cmake/packaging/macos/MacOsPkg.cmake
    A admin/cmake/packaging/macos/StageAssistantDev.cmake
    A admin/cmake/packaging/windows/WinDeploy.cmake
    A admin/cmake/packaging/windows/WinPkg.cmake
    A admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
    M admin/cmake/toolchain.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/fix-arm64-no-fpu-neon64.patch
    A buildsys/vcpkg/overlay-ports/mpg123/have-fpu.diff
    A buildsys/vcpkg/overlay-ports/mpg123/pkgconfig.diff
    A buildsys/vcpkg/overlay-ports/mpg123/portfile.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/vcpkg.json
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
    A buildsys/vcpkg/overlay-ports/qttools/port.data.cmake
    A buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat
    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
    R doc/manual/2dsa/2dsa.body
    R doc/manual/2dsa/2dsa_advan.body
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    M doc/manual/CMakeLists.txt
    M doc/manual/Makefile
    M doc/manual/README.md
    R doc/manual/advanced_config.body
    R doc/manual/analytes.body
    R doc/manual/associations.body
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    R doc/manual/images/fe_match.png
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    M gui/CMakeLists.txt
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    M gui/us_solution_gui.h
    M makeall.sh
    A pkg/macos/README.md
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    A pkg/macos/postinstall
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    A pkg/macos/resources/Welcome.txt.in
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    M programs/CMakeLists.txt
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    M programs/us_helpdaemon/us_helpdaemon.cpp
    M programs/us_mpi_analysis/2dsa_worker.cpp
    M programs/us_mpi_analysis/CMakeLists.txt
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    M qmakeall.sh
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    M utils/us_memory.cpp
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  Log Message:
  -----------
  Merge pull request #401 from ehb54/main

pull main into alexey-dev-issue792


  Commit: 82d4d191eb9afe4cf103b3792c6730f51eb8bafa
      https://github.com/ehb54/ultrascan3/commit/82d4d191eb9afe4cf103b3792c6730f51eb8bafa
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-04-02 (Thu, 02 Apr 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  GMP-ABDE -- 4. EDIT: ask user if only last scan was selected for each channel before accepting new edit parameters...


  Commit: e58b784f94dc22571d37ac77acdc90c148ee0004
      https://github.com/ehb54/ultrascan3/commit/e58b784f94dc22571d37ac77acdc90c148ee0004
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-04-02 (Thu, 02 Apr 2026)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h

  Log Message:
  -----------
  Merge pull request #398 from ehb54/alexey-dev-issue792

Alexey dev issue792: GMP-ABDE & dataDisk changes


  Commit: 94b9a553e412fb675ba67eea2c9f665b6207233d
      https://github.com/ehb54/ultrascan3/commit/94b9a553e412fb675ba67eea2c9f665b6207233d
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
    M doc/manual/CMakeLists.txt

  Log Message:
  -----------
  Update CMakeLists to use `${SPHINX_PROJECT}` variables for Qt help file generation paths (`.qhp` and `.qhcp`).

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: e2d7da6bbf9fcc62e4bfa452f5ec19623488611e
      https://github.com/ehb54/ultrascan3/commit/e2d7da6bbf9fcc62e4bfa452f5ec19623488611e
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
    M doc/manual/source/requirements.txt

  Log Message:
  -----------
  Add `sphinxcontrib-qthelp` and `myst-parser` to documentation requirements for Qt help and Markdown support.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 1e69c5071f55b5bc4963bc33c54c1f5978d9a86f
      https://github.com/ehb54/ultrascan3/commit/1e69c5071f55b5bc4963bc33c54c1f5978d9a86f
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
    M doc/manual/source/conf.py

  Log Message:
  -----------
  Enhance Sphinx configuration: add version metadata generation from Git, update QtHelp/HTML output, and refine documentation structure.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 64293373d85c1dd99096806b49351207ccc8fcbd
      https://github.com/ehb54/ultrascan3/commit/64293373d85c1dd99096806b49351207ccc8fcbd
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
    M doc/manual/source/index.rst

  Log Message:
  -----------
  Expand UltraScan-III documentation: add comprehensive structure, improve navigation with toctree captions, and include download link for PDF manual.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 4996aa594c1ed86a6a18b51f4a2e7f2f312ba230
      https://github.com/ehb54/ultrascan3/commit/4996aa594c1ed86a6a18b51f4a2e7f2f312ba230
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

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  Log Message:
  -----------
  Expand UltraScan-III documentation: add detailed GMP workflow guides, including protocol development, automation, e-signatures, report generation, and data acquisition.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 518c1ee39c53443282fc68ec37cc855b2e5aa4f0
      https://github.com/ehb54/ultrascan3/commit/518c1ee39c53443282fc68ec37cc855b2e5aa4f0
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
    M doc/manual/source/conf.py

  Log Message:
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  Update Sphinx configuration: adjust LaTeX preamble for header height and standardize document titles across output formats.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 2946f944109702806ad7b25d283b258d3702adfa
      https://github.com/ehb54/ultrascan3/commit/2946f944109702806ad7b25d283b258d3702adfa
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
    M doc/manual/source/xpn_viewer.rst

  Log Message:
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  Standardize "Optima" capitalization across XPN Viewer documentation.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 34d316c7e97fcdabcf86b0939a85e834d6d878f6
      https://github.com/ehb54/ultrascan3/commit/34d316c7e97fcdabcf86b0939a85e834d6d878f6
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
    M doc/manual/source/vhw_enhanced.rst

  Log Message:
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  Fix typo in vHW documentation: correct "Wieschet" to "Weischet".

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 56e8463890e60e8501b4233fb88a6dd74f0e39f4
      https://github.com/ehb54/ultrascan3/commit/56e8463890e60e8501b4233fb88a6dd74f0e39f4
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
    M doc/manual/source/index.rst

  Log Message:
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  Update Ultrascan-III website URL in documentation.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: ff5165410e579e9e3bf489cf74532942d4dd1b6d
      https://github.com/ehb54/ultrascan3/commit/ff5165410e579e9e3bf489cf74532942d4dd1b6d
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
    M doc/manual/source/config.rst

  Log Message:
  -----------
  Revise configuration documentation: clarify directory descriptions, standardize terminology, improve debugging/debug level explanations, and update Optima panel section with centered image and corrected details.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 9d89cccbd5d1edac19f5118f9f73b017b4b62768
      https://github.com/ehb54/ultrascan3/commit/9d89cccbd5d1edac19f5118f9f73b017b4b62768
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
    M doc/manual/source/experiment/import.rst

  Log Message:
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  Fix image filename in import documentation: correct "Triplicate" to "triple".

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 20e6e37595eff7fcd8c617c1ae65f049be8e60f5
      https://github.com/ehb54/ultrascan3/commit/20e6e37595eff7fcd8c617c1ae65f049be8e60f5
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
    A doc/manual/source/auto_index.py

  Log Message:
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  Add Sphinx transform for auto-generating index entries from section titles.


  Commit: 78763cd74bcca991929a7dc53e314e9e61a755b6
      https://github.com/ehb54/ultrascan3/commit/78763cd74bcca991929a7dc53e314e9e61a755b6
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
    M doc/manual/source/conf.py

  Log Message:
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  Update Sphinx configuration: add `auto_index` extension and adjust sys.path setup for dynamic module resolution.


  Commit: e67f33a49e896d701d7a71317d8d8b2dcebb45a9
      https://github.com/ehb54/ultrascan3/commit/e67f33a49e896d701d7a71317d8d8b2dcebb45a9
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
    R doc/manual/source/_static/images/optima_config_edit.png
    M doc/manual/source/_static/images/optima_config_new.png

  Log Message:
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  Update Optima configuration images in documentation: delete outdated file and revise new image.


  Commit: a0df61141d5869a4c8d57ccdaf8896b84fbf1add
      https://github.com/ehb54/ultrascan3/commit/a0df61141d5869a4c8d57ccdaf8896b84fbf1add
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
    M doc/manual/source/config.rst

  Log Message:
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  Standardize header formatting in configuration documentation: adjust underline lengths and update section titles for consistency.


  Commit: 20a795daec1d9d2b8a1e99a9522c5b0f39516f9f
      https://github.com/ehb54/ultrascan3/commit/20a795daec1d9d2b8a1e99a9522c5b0f39516f9f
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
    M doc/manual/source/conf.py

  Log Message:
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  Update Sphinx configuration: fix sys.path insertion to correctly add the current directory.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 7022886ca10e06e291974dd36c40d68886f97592
      https://github.com/ehb54/ultrascan3/commit/7022886ca10e06e291974dd36c40d68886f97592
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
    M doc/manual/source/2dsa/2dsa_adv.rst

  Log Message:
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  Update doc/manual/source/2dsa/2dsa_adv.rst

Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com>


  Commit: fec01135a70f30bb6fe279c6355c6d8d46e50f02
      https://github.com/ehb54/ultrascan3/commit/fec01135a70f30bb6fe279c6355c6d8d46e50f02
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  Date:   2026-04-03 (Fri, 03 Apr 2026)

  Changed paths:
    M doc/manual/source/2dsa/2dsa_analys.rst

  Log Message:
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  Update doc/manual/source/2dsa/2dsa_analys.rst

Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com>


  Commit: 213c7d1f346ca9afa40c688dc5d4daae4e55d79f
      https://github.com/ehb54/ultrascan3/commit/213c7d1f346ca9afa40c688dc5d4daae4e55d79f
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-04 (Sat, 04 Apr 2026)

  Changed paths:
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    M doc/manual/source/_static/custom.css

  Log Message:
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  Remove unused `custom.css` file and retain only essential styles in `custom.css` for cleaner documentation styling.


  Commit: f31826280b208f87c2044d91ceed9b3b725941b8
      https://github.com/ehb54/ultrascan3/commit/f31826280b208f87c2044d91ceed9b3b725941b8
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-04 (Sat, 04 Apr 2026)

  Changed paths:
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    M doc/manual/source/_static/images/gmp/automation/lims.png
    M doc/manual/source/_static/images/reporter-cmenu.png
    M doc/manual/source/_static/images/us_project_webed.png

  Log Message:
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  Downscale extremely large images


  Commit: 0d8aa5eb3868f4fa28393c667f367905088267c1
      https://github.com/ehb54/ultrascan3/commit/0d8aa5eb3868f4fa28393c667f367905088267c1
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-04 (Sat, 04 Apr 2026)

  Changed paths:
    M doc/manual/source/conf.py

  Log Message:
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  Add support for qthelp exclusive css file


  Commit: 50222b23f0a251076777810ba005c924ef2ddb00
      https://github.com/ehb54/ultrascan3/commit/50222b23f0a251076777810ba005c924ef2ddb00
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-04 (Sat, 04 Apr 2026)

  Changed paths:
    A doc/manual/source/_static/qthelp.css

  Log Message:
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  Add `qthelp.css` file to define default styling for QtHelp documentation


  Commit: 86fcf7036c1ad44220fbb6544552d2e7458fd76e
      https://github.com/ehb54/ultrascan3/commit/86fcf7036c1ad44220fbb6544552d2e7458fd76e
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-04 (Sat, 04 Apr 2026)

  Changed paths:
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    M doc/manual/source/config.rst
    M doc/manual/source/fit_meniscus.rst
    M doc/manual/source/pseudo3d.rst

  Log Message:
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  Standardize help text and add debug text options in configuration documentation.


  Commit: 38351d9b483d34b0d464cdc0a02cf4d0c711a5f0
      https://github.com/ehb54/ultrascan3/commit/38351d9b483d34b0d464cdc0a02cf4d0c711a5f0
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-04 (Sat, 04 Apr 2026)

  Changed paths:
    M doc/manual/source/auto_index.py

  Log Message:
  -----------
  Refine `auto_index` title processing: improve whitespace handling, enhance dimensional notation standardization, and ensure title case consistency.


  Commit: 881728a585525975764e48eb87de544e1a8f5ed6
      https://github.com/ehb54/ultrascan3/commit/881728a585525975764e48eb87de544e1a8f5ed6
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-04 (Sat, 04 Apr 2026)

  Changed paths:
    M doc/manual/source/fe_match/fe_match_main.rst
    M doc/manual/source/fe_match/fe_match_simulate.rst
    M doc/manual/source/fe_match/index.rst

  Log Message:
  -----------
  Standardize section headers and titles in FE Match documentation for consistency and improve formatting.


  Commit: 278eeecf4ee5b0f5e03bbcd8eae65e831f15837b
      https://github.com/ehb54/ultrascan3/commit/278eeecf4ee5b0f5e03bbcd8eae65e831f15837b
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-04 (Sat, 04 Apr 2026)

  Changed paths:
    M doc/manual/source/start_page-mw.rst
    M doc/manual/source/start_page.rst
    M doc/manual/source/time_derivative.rst
    M doc/manual/source/vhw_combine.rst
    M doc/manual/source/vhw_distrib_plot.rst
    M doc/manual/source/vhw_enhanced.rst

  Log Message:
  -----------
  Standardize "van Holde-Weischet" terminology across documentation for improved consistency.


  Commit: 99bbe83fea89b40008e71864323759b4a75ff8cb
      https://github.com/ehb54/ultrascan3/commit/99bbe83fea89b40008e71864323759b4a75ff8cb
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-04 (Sat, 04 Apr 2026)

  Changed paths:
    M doc/manual/source/2dsa/2dsa_main.rst
    M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst
    M doc/manual/source/pcsa/pcsa_results.rst
    M doc/manual/source/start_page-rpt.rst

  Log Message:
  -----------
  Standardize section headers, titles, and dimensional notations in documentation for improved formatting and consistency.


  Commit: 75a2cca73b6cec686f996d57da668814a975dfc6
      https://github.com/ehb54/ultrascan3/commit/75a2cca73b6cec686f996d57da668814a975dfc6
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-04 (Sat, 04 Apr 2026)

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  Log Message:
  -----------
  Merge pull request #402 from ehb54/lukas/manual

Add sphinx manual


  Commit: dd51d90b60e4fd6785c98531588a585dc0fb34ed
      https://github.com/ehb54/ultrascan3/commit/dd51d90b60e4fd6785c98531588a585dc0fb34ed
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2026-04-04 (Sat, 04 Apr 2026)

  Changed paths:
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    A doc/manual/source/us_investigator.rst
    A doc/manual/source/us_modelmetrics.rst
    A doc/manual/source/us_project.rst
    A doc/manual/source/us_spectrum.rst
    A doc/manual/source/vhw_combine.rst
    A doc/manual/source/vhw_distrib_plot.rst
    A doc/manual/source/vhw_enhanced.rst
    A doc/manual/source/xpn_viewer.rst

  Log Message:
  -----------
  Merge pull request #404 from ehb54/main

update demeler-doc1 to main


  Commit: cd2bc2e7c99e075b63a282c8e687e6d0e111670d
      https://github.com/ehb54/ultrascan3/commit/cd2bc2e7c99e075b63a282c8e687e6d0e111670d
  Author: Demeler <demeler at uslims.uleth.ca>
  Date:   2026-04-04 (Sat, 04 Apr 2026)

  Changed paths:
    M doc/manual/source/fit_meniscus.rst

  Log Message:
  -----------
  Modify capitalization in fit meniscus


  Commit: cc049b493eb8cb3409dd4d22051e345fd80c7982
      https://github.com/ehb54/ultrascan3/commit/cc049b493eb8cb3409dd4d22051e345fd80c7982
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2026-04-04 (Sat, 04 Apr 2026)

  Changed paths:
    M doc/manual/source/fit_meniscus.rst

  Log Message:
  -----------
  Merge pull request #405 from ehb54/demeler-doc1

Demeler doc1


  Commit: 11572ca66d369080b73f5925c9b46c3b7200c538
      https://github.com/ehb54/ultrascan3/commit/11572ca66d369080b73f5925c9b46c3b7200c538
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-06 (Mon, 06 Apr 2026)

  Changed paths:
    M doc/manual/CMakeLists.txt
    M doc/manual/Makefile
    M doc/manual/source/index.rst

  Log Message:
  -----------
  Update Sphinx build system: include `auto_index.py`, link PDF manual in HTML, and clean PDF on `make clean`.


  Commit: e2fbf48c659f3fad2922c9067a43f1b3bdc0ec5e
      https://github.com/ehb54/ultrascan3/commit/e2fbf48c659f3fad2922c9067a43f1b3bdc0ec5e
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-06 (Mon, 06 Apr 2026)

  Changed paths:
    M doc/manual/source/conf.py

  Log Message:
  -----------
  Update LaTeX configuration: set `latex_use_xindy` to False and redefine font settings for better Unicode handling and compatibility.


  Commit: 78d927e26195be17b4a8ff09959676a6247bcb34
      https://github.com/ehb54/ultrascan3/commit/78d927e26195be17b4a8ff09959676a6247bcb34
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-06 (Mon, 06 Apr 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h

  Log Message:
  -----------
  Ensure zoom stack initialization on zoom button press


  Commit: dcc8ccbdac5394275563aeee0c8c523a6df45589
      https://github.com/ehb54/ultrascan3/commit/dcc8ccbdac5394275563aeee0c8c523a6df45589
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-06 (Mon, 06 Apr 2026)

  Changed paths:
    M gui/us_plot.cpp

  Log Message:
  -----------
  Refactor zoom logic to handle null plots and absolute values


  Commit: f7169d62eaece4fd69dd8f88ab06432a8bb390f0
      https://github.com/ehb54/ultrascan3/commit/f7169d62eaece4fd69dd8f88ab06432a8bb390f0
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-07 (Tue, 07 Apr 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    A test/utils/test_us_help_pages.cpp

  Log Message:
  -----------
  Add unit test for validating existence of help pages and refactor zoom stack initialization for improved consistency.


  Commit: a542b58b077c8629e05993705eb0967c8e2ed720
      https://github.com/ehb54/ultrascan3/commit/a542b58b077c8629e05993705eb0967c8e2ed720
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-07 (Tue, 07 Apr 2026)

  Changed paths:
    M .gitignore

  Log Message:
  -----------
  Update .gitignore to exclude `doc/manual/build`


  Commit: 3841b3da9b269c931e61bd8332217ea7edafa5ce
      https://github.com/ehb54/ultrascan3/commit/3841b3da9b269c931e61bd8332217ea7edafa5ce
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-07 (Tue, 07 Apr 2026)

  Changed paths:
    M utils/CMakeLists.txt
    M utils/us_extern.h

  Log Message:
  -----------
  Add static library support: define `US_UTIL_STATIC` and conditionally update `us_extern.h`.


  Commit: 8bd5bb513393dabe50c036ffbfe60f96a6b3ca21
      https://github.com/ehb54/ultrascan3/commit/8bd5bb513393dabe50c036ffbfe60f96a6b3ca21
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-07 (Tue, 07 Apr 2026)

  Changed paths:
    M utils/us_buffer.h

  Log Message:
  -----------
  Initialize `grad_form` flag to `false` in `us_buffer.h`.


  Commit: 923260944deb1b79e310ceb98a16effa5b5090ca
      https://github.com/ehb54/ultrascan3/commit/923260944deb1b79e310ceb98a16effa5b5090ca
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-07 (Tue, 07 Apr 2026)

  Changed paths:
    M gui/us_abstractrotor_gui.h
    M gui/us_analyte_gui.h
    M gui/us_buffer_gui.h
    M gui/us_data_loader.h
    M gui/us_experiment_gui.h
    M gui/us_get_run.h
    M gui/us_load_auc.h
    M gui/us_model_loader.h
    M gui/us_select_triples.h
    M gui/us_solution_gui.h
    M programs/us_2dsa/us_adv_analysis_2d.h
    M programs/us_2dsa/us_analysis_control_2d.h
    M programs/us_2dsa/us_plot_control_2d.h
    M programs/us_esigner_gmp/us_esigner_gmp.h
    M programs/us_fematch/us_advanced_fem.h
    M programs/us_fematch/us_fematch.h
    M programs/us_fematch/us_plot_control_fem.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.h
    M programs/us_mwl_spectra/us_mwl_spectra.h
    M programs/us_mwl_spectra/us_mwls_pltctl.h
    M programs/us_mwlr_viewer/us_mwlr_viewer.h
    M programs/us_pcsa/us_adv_analysis_pc.h
    M programs/us_pcsa/us_analysis_control_pc.h
    M programs/us_pcsa/us_pcsa.h
    M programs/us_pcsa/us_plot_control_pc.h
    M programs/us_pcsa/us_rpscan.h
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
    M programs/us_pseudo3d_combine/us_remove_distros.h
    M programs/us_ramp/us_select_triples_ra.h
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_vhw_combine/us_vhwc_pltctl.h

  Log Message:
  -----------
  Update help file paths for improved documentation consistency and organization.


  Commit: 78e6d90c9756f558dd3c67e03ec447dbaa996a8a
      https://github.com/ehb54/ultrascan3/commit/78e6d90c9756f558dd3c67e03ec447dbaa996a8a
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-07 (Tue, 07 Apr 2026)

  Changed paths:
    M .github/workflows/doc-build.yml

  Log Message:
  -----------
  Let github action only build the documnetaion with the qthelp builder, because latex dependencies are currently missing


  Commit: 05eb1370b6158124bcafd398fef77466e66be0aa
      https://github.com/ehb54/ultrascan3/commit/05eb1370b6158124bcafd398fef77466e66be0aa
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-07 (Tue, 07 Apr 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h

  Log Message:
  -----------
  Remove feature commit in wrong branch


  Commit: 18c02644a764f585fd585e1af1c21e4d5790b60c
      https://github.com/ehb54/ultrascan3/commit/18c02644a764f585fd585e1af1c21e4d5790b60c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-07 (Tue, 07 Apr 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h

  Log Message:
  -----------
  Merge pull request #406 from ehb54/lukas/us_plot_zoom_qwt616

Ensure zoom stack initialization on zoom button press


  Commit: 3c1312a39ac562248315fb410c301c9d8eab79f5
      https://github.com/ehb54/ultrascan3/commit/3c1312a39ac562248315fb410c301c9d8eab79f5
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-07 (Tue, 07 Apr 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/manual_test/make


  Commit: 99fc3a66c861b6275cedd397bfd03e34e85d9435
      https://github.com/ehb54/ultrascan3/commit/99fc3a66c861b6275cedd397bfd03e34e85d9435
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-07 (Tue, 07 Apr 2026)

  Changed paths:
    A .github/workflows/sphinx-doc-build.yml

  Log Message:
  -----------
  Add GitHub Actions workflow for Sphinx documentation build


  Commit: 5fa677c2afd3175fa29a37165561f4125a867c5d
      https://github.com/ehb54/ultrascan3/commit/5fa677c2afd3175fa29a37165561f4125a867c5d
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-07 (Tue, 07 Apr 2026)

  Changed paths:
    M .github/workflows/sphinx-doc-build.yml

  Log Message:
  -----------
  Refactor Sphinx GitHub Actions workflow: replace deprecated problem matcher usage, streamline build commands, and add error handling.


  Commit: b91a5ae2fecdc63970efdf031426e000eff8cc6e
      https://github.com/ehb54/ultrascan3/commit/b91a5ae2fecdc63970efdf031426e000eff8cc6e
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-07 (Tue, 07 Apr 2026)

  Changed paths:
    A .github/sphinx-matcher.json

  Log Message:
  -----------
  Add Sphinx problem matcher configuration for GitHub Actions


  Commit: 45da34200ce91a23a4f1f8d168e7a1ee612b03b5
      https://github.com/ehb54/ultrascan3/commit/45da34200ce91a23a4f1f8d168e7a1ee612b03b5
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-07 (Tue, 07 Apr 2026)

  Changed paths:
    M .github/workflows/sphinx-doc-build.yml

  Log Message:
  -----------
  Annotate Sphinx build warnings in GitHub Actions workflow and update qthelp build step for improved error handling.


  Commit: f3750319ef93a4a4b5f925ffaa38acd1ebb8f6f5
      https://github.com/ehb54/ultrascan3/commit/f3750319ef93a4a4b5f925ffaa38acd1ebb8f6f5
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-07 (Tue, 07 Apr 2026)

  Changed paths:
    M .github/workflows/sphinx-doc-build.yml

  Log Message:
  -----------
  Replace custom Sphinx warning annotation script with `sphinx-doc/github-problem-matcher` for streamlined GitHub Actions workflow.


  Commit: bc2b74fbb9b5698c8269f2d6b060ce420ab6697a
      https://github.com/ehb54/ultrascan3/commit/bc2b74fbb9b5698c8269f2d6b060ce420ab6697a
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-07 (Tue, 07 Apr 2026)

  Changed paths:
    R .github/sphinx-matcher.json

  Log Message:
  -----------
  Remove obsolete Sphinx problem matcher configuration from GitHub Actions.


  Commit: 715a3fd86ec9bdb692b3e1fa0ce393a86548c213
      https://github.com/ehb54/ultrascan3/commit/715a3fd86ec9bdb692b3e1fa0ce393a86548c213
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-07 (Tue, 07 Apr 2026)

  Changed paths:
    M doc/manual/source/2dsa/2dsa_main.rst
    M doc/manual/source/common_dialogs.rst
    M doc/manual/source/convert.rst
    M doc/manual/source/experiment/import.rst
    M doc/manual/source/experiment/liveupdate.rst
    M doc/manual/source/export_legacy.rst
    M doc/manual/source/fe_match/fe_match_main.rst
    M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst
    M doc/manual/source/gmp/gmp_protocol_development.rst
    M doc/manual/source/pcsa/pcsa.rst
    M doc/manual/source/second_moment.rst
    M doc/manual/source/start_page-mw.rst
    M doc/manual/source/start_page.rst
    M doc/manual/source/time_derivative.rst
    M doc/manual/source/us_buoyancy.rst
    M doc/manual/source/us_edit.rst
    M doc/manual/source/us_fds_filemanager.rst
    M doc/manual/source/vhw_combine.rst
    M doc/manual/source/vhw_enhanced.rst

  Log Message:
  -----------
  Fix triplicates to triples


  Commit: f1b1aba77a1f2da432e6262d842221eb275d2dd0
      https://github.com/ehb54/ultrascan3/commit/f1b1aba77a1f2da432e6262d842221eb275d2dd0
  Author: HabGab <gabirh at myumanitoba.ca>
  Date:   2026-04-07 (Tue, 07 Apr 2026)

  Changed paths:
    M doc/manual/source/2dsa/2dsa_main.rst
    A doc/manual/source/_static/images/dmga-save.png
    A doc/manual/source/_static/images/dmga.png
    A doc/manual/source/_static/images/dmga_constr.png
    A doc/manual/source/_static/images/fe_dmga_adv.png
    M doc/manual/source/buoyancy_editor.rst
    M doc/manual/source/common_dialogs.rst
    M doc/manual/source/convert.rst
    M doc/manual/source/dmga_init.rst
    M doc/manual/source/dmga_init_constr.rst
    M doc/manual/source/experiment/import.rst
    M doc/manual/source/experiment/liveupdate.rst
    M doc/manual/source/experiment/range.rst
    M doc/manual/source/export_legacy.rst
    A doc/manual/source/fe_match/fe_dmga_adv.rst
    M doc/manual/source/fe_match/fe_match_main.rst
    M doc/manual/source/fe_match/fe_match_simulate.rst
    M doc/manual/source/fe_match/index.rst
    M doc/manual/source/gmp/gmp_automation.rst
    M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst
    M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst
    M doc/manual/source/gmp/gmp_protocol_development.rst
    M doc/manual/source/index.rst
    M doc/manual/source/multi-wavelength/mwl_species_fit.rst
    M doc/manual/source/multi-wavelength/mwl_species_sim.rst
    M doc/manual/source/pcsa/pcsa.rst
    M doc/manual/source/pcsa/pcsa_results.rst
    M doc/manual/source/rmsd_query.rst
    M doc/manual/source/run_details.rst
    M doc/manual/source/second_moment.rst
    M doc/manual/source/start_page-mw.rst
    M doc/manual/source/start_page-rpt.rst
    M doc/manual/source/start_page.rst
    M doc/manual/source/us_buoyancy.rst
    M doc/manual/source/us_edit.rst
    M doc/manual/source/us_fds_filemanager.rst
    M doc/manual/source/vhw_combine.rst
    M doc/manual/source/vhw_enhanced.rst
    M doc/manual/source/xpn_viewer.rst

  Log Message:
  -----------
  update to latest


  Commit: ff98f3a480b918b42a59334bc0506f87b59b5a37
      https://github.com/ehb54/ultrascan3/commit/ff98f3a480b918b42a59334bc0506f87b59b5a37
  Author: HabGab <gabirh at myumanitoba.ca>
  Date:   2026-04-07 (Tue, 07 Apr 2026)

  Changed paths:
    M programs/us_integral/us_delete_models.h

  Log Message:
  -----------
  first link change -  integral


  Commit: 584135021b461a9f753c2ac63b2f37df4cd85b0b
      https://github.com/ehb54/ultrascan3/commit/584135021b461a9f753c2ac63b2f37df4cd85b0b
  Author: HabGab <gabirh at myumanitoba.ca>
  Date:   2026-04-07 (Tue, 07 Apr 2026)

  Changed paths:
    A doc/manual/source/_static/images/delseltrip.png
    M doc/manual/source/common_dialogs.rst
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_integral/us_delete_models.h
    M programs/us_integral/us_integral.h

  Log Message:
  -----------
  update us_experiment show.help


  Commit: 8e3da82ae6b7563f455e97718bb1f335a1c9bfcc
      https://github.com/ehb54/ultrascan3/commit/8e3da82ae6b7563f455e97718bb1f335a1c9bfcc
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-08 (Wed, 08 Apr 2026)

  Changed paths:
    M doc/manual/source/2dsa/2dsa_main.rst
    M doc/manual/source/buffer/buffer_edit.rst
    M doc/manual/source/buffer/buffer_settings.rst
    M doc/manual/source/buoyancy_editor.rst
    M doc/manual/source/common_dialogs.rst
    M doc/manual/source/convert.rst
    M doc/manual/source/experiment/import.rst
    M doc/manual/source/experiment/liveupdate.rst
    M doc/manual/source/experiment/range.rst
    M doc/manual/source/export_legacy.rst
    M doc/manual/source/fe_match/fe_match_main.rst
    M doc/manual/source/fe_match/fe_match_simulate.rst
    M doc/manual/source/gmp/gmp_automation.rst
    M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst
    M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst
    M doc/manual/source/gmp/gmp_protocol_development.rst
    M doc/manual/source/multi-wavelength/mwl_species_fit.rst
    M doc/manual/source/multi-wavelength/mwl_species_sim.rst
    M doc/manual/source/pcsa/pcsa.rst
    M doc/manual/source/pcsa/pcsa_results.rst
    M doc/manual/source/rmsd_query.rst
    M doc/manual/source/run_details.rst
    M doc/manual/source/second_moment.rst
    M doc/manual/source/start_page-mw.rst
    M doc/manual/source/start_page-rpt.rst
    M doc/manual/source/start_page.rst
    M doc/manual/source/time_derivative.rst
    M doc/manual/source/us_buoyancy.rst
    M doc/manual/source/us_edit.rst
    M doc/manual/source/us_fds_filemanager.rst
    M doc/manual/source/vhw_combine.rst
    M doc/manual/source/vhw_enhanced.rst
    M doc/manual/source/xpn_viewer.rst

  Log Message:
  -----------
  Standardize terminology: replace "Triplicates" with "Triples" across documentation for clarity and consistency.


  Commit: 7128a07267ee0a0fd7913ea221c2cd891b7099a8
      https://github.com/ehb54/ultrascan3/commit/7128a07267ee0a0fd7913ea221c2cd891b7099a8
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-08 (Wed, 08 Apr 2026)

  Changed paths:
    M test/utils/test_us_help_pages.cpp
    M test/utils/test_us_regex.cpp

  Log Message:
  -----------
  Improve test failure messages: use `ADD_FAILURE_AT` for precise file/line annotation and enhance regex and help file error clarity


  Commit: 9cf710938424ec4c02179f22bb8da50b226085c6
      https://github.com/ehb54/ultrascan3/commit/9cf710938424ec4c02179f22bb8da50b226085c6
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-08 (Wed, 08 Apr 2026)

  Changed paths:
    A .github/gtest-us.json
    M .github/workflows/unit-tests-v2.yml
    M .github/workflows/unit-tests.yml

  Log Message:
  -----------
  Add GoogleTest problem matcher to GitHub Actions workflows for enhanced test failure annotation


  Commit: d849477c413c4de8c709970000b9beed563952aa
      https://github.com/ehb54/ultrascan3/commit/d849477c413c4de8c709970000b9beed563952aa
  Author: HabGab <gabirh at myumanitoba.ca>
  Date:   2026-04-08 (Wed, 08 Apr 2026)

  Changed paths:
    M programs/us_2dsa/us_2dsa.h
    M programs/us_config/us_color.cpp
    M programs/us_config/us_database.cpp
    M programs/us_config/us_xpnhost.cpp
    M programs/us_config/us_xpnhost_db.cpp
    M programs/us_mwlr_viewer/us_mwl_pltctrl.h

  Log Message:
  -----------
  unit test link updates


  Commit: ba9907ccbb59086289b70ee897744f22b939a693
      https://github.com/ehb54/ultrascan3/commit/ba9907ccbb59086289b70ee897744f22b939a693
  Author: HabGab <gabirh at myumanitoba.ca>
  Date:   2026-04-08 (Wed, 08 Apr 2026)

  Changed paths:
    A doc/manual/source/_static/images/select_prefilt.png
    M doc/manual/source/common_dialogs.rst
    M gui/us_select_edits.h
    M gui/us_select_item.h
    M gui/us_select_runs.h
    M programs/us_config/us_admin.cpp
    M programs/us_config/us_font.cpp

  Log Message:
  -----------
  unit tests help link update


  Commit: 9a107befce5878fa969190700c2a2f6ef48ce068
      https://github.com/ehb54/ultrascan3/commit/9a107befce5878fa969190700c2a2f6ef48ce068
  Author: HabGab <gabirh at myumanitoba.ca>
  Date:   2026-04-09 (Thu, 09 Apr 2026)

  Changed paths:
    A doc/manual/source/analysprof_general.rst
    M doc/manual/source/astfem_sim.rst
    M doc/manual/source/convert.rst
    A doc/manual/source/ramp_data.rst
    A doc/manual/source/us_administrator.rst
    M doc/manual/source/us_edit.rst
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_config/us_advanced.cpp
    M programs/us_edit/us_edit_scan.h
    M programs/us_edit/us_select_lambdas.h
    M programs/us_ramp/us_experiment_gui_ra.h

  Log Message:
  -----------
  updates


  Commit: 6fe43510daa8d32555c611669eaa32ab11da07ff
      https://github.com/ehb54/ultrascan3/commit/6fe43510daa8d32555c611669eaa32ab11da07ff
  Author: HabGab <gabirh at myumanitoba.ca>
  Date:   2026-04-09 (Thu, 09 Apr 2026)

  Changed paths:
    A doc/manual/source/_static/images/edit_exclude_scan.png
    A doc/manual/source/_static/images/edit_scan.png

  Log Message:
  -----------
  images


  Commit: 290b3ed2436ce1c133fb54567579f869c3e2ea70
      https://github.com/ehb54/ultrascan3/commit/290b3ed2436ce1c133fb54567579f869c3e2ea70
  Author: HabGab <gabirh at myumanitoba.ca>
  Date:   2026-04-09 (Thu, 09 Apr 2026)

  Changed paths:
    M doc/manual/source/dens_match.rst
    M programs/us_density_match/us_model_params.h

  Log Message:
  -----------
  update link


  Commit: 6242d49b69ff170e32c1fd9ada173147b3744e39
      https://github.com/ehb54/ultrascan3/commit/6242d49b69ff170e32c1fd9ada173147b3744e39
  Author: HabGab <gabirh at myumanitoba.ca>
  Date:   2026-04-09 (Thu, 09 Apr 2026)

  Changed paths:
    A doc/manual/source/global_equil.rst
    M doc/manual/source/us_edit.rst

  Log Message:
  -----------
  update


  Commit: 0924fcb4af9a8403c404ace536fffa1cf6209b6f
      https://github.com/ehb54/ultrascan3/commit/0924fcb4af9a8403c404ace536fffa1cf6209b6f
  Author: HabGab <gabirh at myumanitoba.ca>
  Date:   2026-04-09 (Thu, 09 Apr 2026)

  Changed paths:
    M doc/manual/source/astfem_sim.rst
    M doc/manual/source/index.rst
    M doc/manual/source/pcsa/index.rst
    A doc/manual/source/pcsa/load_modelrecs.rst
    M programs/us_astfem_sim/us_clipdata.h
    M programs/us_density_match/us_remove_models.h
    M programs/us_edit/us_exclude_profile.h
    M programs/us_fematch/us_adv_dmgamc.h
    M programs/us_globalequil/us_eqfit_control.h
    M programs/us_globalequil/us_eqmodel_control.h
    M programs/us_globalequil/us_model_adpars.h
    M programs/us_globalequil/us_model_select.h
    M programs/us_pcsa/us_mlplot.h

  Log Message:
  -----------
  unit test


  Commit: c8515e182cb1cddab6d51258efd8a99f97c8c667
      https://github.com/ehb54/ultrascan3/commit/c8515e182cb1cddab6d51258efd8a99f97c8c667
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-04-09 (Thu, 09 Apr 2026)

  Changed paths:
    M .github/gtest-us.json

  Log Message:
  -----------
  Fix matcher


  Commit: ff35eb4d37eed1d9a2fdd2200d69a00adfcdb41c
      https://github.com/ehb54/ultrascan3/commit/ff35eb4d37eed1d9a2fdd2200d69a00adfcdb41c
  Author: HabGab <gabirh at myumanitoba.ca>
  Date:   2026-04-09 (Thu, 09 Apr 2026)

  Changed paths:
    M doc/manual/source/2dsa/2dsa_analys.rst
    M doc/manual/source/2dsa/index.rst
    M doc/manual/source/analyte/analyte_edit.rst
    M doc/manual/source/analyte/analyte_select.rst
    M doc/manual/source/astfem_sim.rst
    M doc/manual/source/buoyancy_editor.rst
    M doc/manual/source/combine_models.rst
    M doc/manual/source/common_dialogs.rst
    M doc/manual/source/components.rst
    M doc/manual/source/config.rst
    M doc/manual/source/convert.rst
    M doc/manual/source/dens_match.rst
    M doc/manual/source/dmga_init.rst
    M doc/manual/source/experiment/cells.rst
    M doc/manual/source/experiment/optics.rst
    M doc/manual/source/experiment/range.rst
    M doc/manual/source/experiment/submit.rst
    M doc/manual/source/export_legacy.rst
    M doc/manual/source/idist_combine.rst
    M doc/manual/source/manage_data.rst
    M doc/manual/source/model_editor.rst
    M doc/manual/source/multi-wavelength/mwl_species_sim.rst
    M doc/manual/source/pcsa/pcsa.rst
    M doc/manual/source/pcsa/pcsa_adv.rst
    M doc/manual/source/pcsa/pcsa_results.rst
    M doc/manual/source/pseudo3d.rst
    M doc/manual/source/rmsd_query.rst
    M doc/manual/source/rotor.rst
    M doc/manual/source/solutions/solution_edit.rst
    M doc/manual/source/solutions/solution_select.rst
    M doc/manual/source/start_page-int.rst
    M doc/manual/source/start_page-mw.rst
    M doc/manual/source/start_page-rpt.rst
    M doc/manual/source/start_page.rst
    M doc/manual/source/time_derivative.rst
    M doc/manual/source/vhw_enhanced.rst
    M programs/us_config/us_xpnhost_db.cpp
    M programs/us_pcsa/us_mrecs_loader.h

  Log Message:
  -----------
  sphynx links


  Commit: 287fbcbd18bec2e702fabfb4298a69a0b62ee537
      https://github.com/ehb54/ultrascan3/commit/287fbcbd18bec2e702fabfb4298a69a0b62ee537
  Author: HabGab <gabirh at myumanitoba.ca>
  Date:   2026-04-09 (Thu, 09 Apr 2026)

  Changed paths:
    A .github/gtest-us.json
    M .github/workflows/doc-build.yml
    A .github/workflows/sphinx-doc-build.yml
    M .github/workflows/unit-tests-v2.yml
    M .github/workflows/unit-tests.yml
    M .gitignore
    M doc/manual/CMakeLists.txt
    M doc/manual/Makefile
    M doc/manual/source/2dsa/2dsa_analys.rst
    M doc/manual/source/2dsa/2dsa_main.rst
    M doc/manual/source/2dsa/index.rst
    A doc/manual/source/_static/images/delseltrip.png
    A doc/manual/source/_static/images/dmga-save.png
    A doc/manual/source/_static/images/dmga.png
    A doc/manual/source/_static/images/dmga_constr.png
    A doc/manual/source/_static/images/edit_exclude_scan.png
    A doc/manual/source/_static/images/edit_scan.png
    A doc/manual/source/_static/images/fe_dmga_adv.png
    A doc/manual/source/_static/images/select_prefilt.png
    A doc/manual/source/analysprof_general.rst
    M doc/manual/source/analyte/analyte_edit.rst
    M doc/manual/source/analyte/analyte_select.rst
    M doc/manual/source/astfem_sim.rst
    M doc/manual/source/buffer/buffer_edit.rst
    M doc/manual/source/buffer/buffer_settings.rst
    M doc/manual/source/buoyancy_editor.rst
    M doc/manual/source/combine_models.rst
    M doc/manual/source/common_dialogs.rst
    M doc/manual/source/components.rst
    M doc/manual/source/conf.py
    M doc/manual/source/config.rst
    M doc/manual/source/convert.rst
    M doc/manual/source/dens_match.rst
    M doc/manual/source/dmga_init.rst
    M doc/manual/source/dmga_init_constr.rst
    M doc/manual/source/experiment/cells.rst
    M doc/manual/source/experiment/import.rst
    M doc/manual/source/experiment/liveupdate.rst
    M doc/manual/source/experiment/optics.rst
    M doc/manual/source/experiment/range.rst
    M doc/manual/source/experiment/submit.rst
    M doc/manual/source/export_legacy.rst
    A doc/manual/source/fe_match/fe_dmga_adv.rst
    M doc/manual/source/fe_match/fe_match_main.rst
    M doc/manual/source/fe_match/fe_match_simulate.rst
    M doc/manual/source/fe_match/index.rst
    A doc/manual/source/global_equil.rst
    M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst
    M doc/manual/source/gmp/gmp_protocol_development.rst
    M doc/manual/source/idist_combine.rst
    M doc/manual/source/index.rst
    M doc/manual/source/manage_data.rst
    M doc/manual/source/model_editor.rst
    M doc/manual/source/multi-wavelength/mwl_species_sim.rst
    M doc/manual/source/pcsa/index.rst
    A doc/manual/source/pcsa/load_modelrecs.rst
    M doc/manual/source/pcsa/pcsa.rst
    M doc/manual/source/pcsa/pcsa_adv.rst
    M doc/manual/source/pcsa/pcsa_results.rst
    M doc/manual/source/pseudo3d.rst
    A doc/manual/source/ramp_data.rst
    M doc/manual/source/rmsd_query.rst
    M doc/manual/source/rotor.rst
    M doc/manual/source/second_moment.rst
    M doc/manual/source/solutions/solution_edit.rst
    M doc/manual/source/solutions/solution_select.rst
    M doc/manual/source/start_page-int.rst
    M doc/manual/source/start_page-mw.rst
    M doc/manual/source/start_page-rpt.rst
    M doc/manual/source/start_page.rst
    M doc/manual/source/time_derivative.rst
    A doc/manual/source/us_administrator.rst
    M doc/manual/source/us_buoyancy.rst
    M doc/manual/source/us_edit.rst
    M doc/manual/source/us_fds_filemanager.rst
    M doc/manual/source/vhw_combine.rst
    M doc/manual/source/vhw_enhanced.rst
    M gui/us_abstractrotor_gui.h
    M gui/us_analyte_gui.h
    M gui/us_buffer_gui.h
    M gui/us_data_loader.h
    M gui/us_experiment_gui.h
    M gui/us_get_run.h
    M gui/us_load_auc.h
    M gui/us_model_loader.h
    M gui/us_select_edits.h
    M gui/us_select_item.h
    M gui/us_select_runs.h
    M gui/us_select_triples.h
    M gui/us_solution_gui.h
    M programs/us_2dsa/us_2dsa.h
    M programs/us_2dsa/us_adv_analysis_2d.h
    M programs/us_2dsa/us_analysis_control_2d.h
    M programs/us_2dsa/us_plot_control_2d.h
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_astfem_sim/us_clipdata.h
    M programs/us_config/us_admin.cpp
    M programs/us_config/us_advanced.cpp
    M programs/us_config/us_color.cpp
    M programs/us_config/us_database.cpp
    M programs/us_config/us_font.cpp
    M programs/us_config/us_xpnhost.cpp
    M programs/us_config/us_xpnhost_db.cpp
    M programs/us_density_match/us_model_params.h
    M programs/us_density_match/us_remove_models.h
    M programs/us_edit/us_edit_scan.h
    M programs/us_edit/us_exclude_profile.h
    M programs/us_edit/us_select_lambdas.h
    M programs/us_esigner_gmp/us_esigner_gmp.h
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_fematch/us_adv_dmgamc.h
    M programs/us_fematch/us_advanced_fem.h
    M programs/us_fematch/us_fematch.h
    M programs/us_fematch/us_plot_control_fem.h
    M programs/us_globalequil/us_eqfit_control.h
    M programs/us_globalequil/us_eqmodel_control.h
    M programs/us_globalequil/us_model_adpars.h
    M programs/us_globalequil/us_model_select.h
    M programs/us_integral/us_delete_models.h
    M programs/us_integral/us_integral.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.h
    M programs/us_mwl_spectra/us_mwl_spectra.h
    M programs/us_mwl_spectra/us_mwls_pltctl.h
    M programs/us_mwlr_viewer/us_mwl_pltctrl.h
    M programs/us_mwlr_viewer/us_mwlr_viewer.h
    M programs/us_pcsa/us_adv_analysis_pc.h
    M programs/us_pcsa/us_analysis_control_pc.h
    M programs/us_pcsa/us_mlplot.h
    M programs/us_pcsa/us_mrecs_loader.h
    M programs/us_pcsa/us_pcsa.h
    M programs/us_pcsa/us_plot_control_pc.h
    M programs/us_pcsa/us_rpscan.h
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
    M programs/us_pseudo3d_combine/us_remove_distros.h
    M programs/us_ramp/us_experiment_gui_ra.h
    M programs/us_ramp/us_select_triples_ra.h
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_vhw_combine/us_vhwc_pltctl.h
    A test/utils/test_us_help_pages.cpp
    M test/utils/test_us_regex.cpp
    M utils/CMakeLists.txt
    M utils/us_buffer.h
    M utils/us_extern.h

  Log Message:
  -----------
  Merge pull request #408 from ehb54/lukas/manual_test/make

Enhance documentation build system and improve Unicode handling


  Commit: 56ac62aee0f30eb92b6ba1c4fb11e0b3a4be919c
      https://github.com/ehb54/ultrascan3/commit/56ac62aee0f30eb92b6ba1c4fb11e0b3a4be919c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-04-22 (Wed, 22 Apr 2026)

  Changed paths:
    A .github/workflows/nightly-builds.yml
    A .github/workflows/nightly-macos-arm.yml
    A .github/workflows/nightly-macos-intel.yml
    A .github/workflows/nightly-oraclelinux8.yml
    A .github/workflows/nightly-ubuntu.yml
    A .github/workflows/nightly-windows.yml
    A .github/workflows/on-demand-build.yml
    A .github/workflows/release.yml
    M .github/workflows/unit-tests-v2.yml
    M CMakeLists.txt
    M admin/cmake/GenerateVersion.cmake
    M admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/x64-linux-dynamic.cmake
    A admin/cmake/triplets/x64-linux.cmake
    A buildsys/vcpkg/overlay-ports/at-spi2-core/portfile.cmake
    A buildsys/vcpkg/overlay-ports/at-spi2-core/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qtbase/GLIB2-static.patch
    A buildsys/vcpkg/overlay-ports/qtbase/allow_outside_prefix.patch
    A buildsys/vcpkg/overlay-ports/qtbase/clang-cl_QGADGET_fix.diff
    A buildsys/vcpkg/overlay-ports/qtbase/clang-cl_source_location.patch
    A buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_install_copyright.cmake
    A buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_install_submodule.cmake
    A buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_port_details.cmake
    A buildsys/vcpkg/overlay-ports/qtbase/config_install.patch
    A buildsys/vcpkg/overlay-ports/qtbase/dont_force_cmakecache_latest.patch
    A buildsys/vcpkg/overlay-ports/qtbase/env.patch
    A buildsys/vcpkg/overlay-ports/qtbase/fix-host-aliasing.patch
    A buildsys/vcpkg/overlay-ports/qtbase/fix-libresolv-test.patch
    A buildsys/vcpkg/overlay-ports/qtbase/fix-link-lib-discovery.patch
    A buildsys/vcpkg/overlay-ports/qtbase/fix-missing-include.patch
    A buildsys/vcpkg/overlay-ports/qtbase/fix_cmake_build.patch
    A buildsys/vcpkg/overlay-ports/qtbase/fix_deploy_windows.patch
    A buildsys/vcpkg/overlay-ports/qtbase/fix_egl.patch
    A buildsys/vcpkg/overlay-ports/qtbase/fix_egl_2.patch
    A buildsys/vcpkg/overlay-ports/qtbase/framework.patch
    A buildsys/vcpkg/overlay-ports/qtbase/harfbuzz.patch
    A buildsys/vcpkg/overlay-ports/qtbase/installed_dir.patch
    A buildsys/vcpkg/overlay-ports/qtbase/macdeployqt-symlinks.patch
    A buildsys/vcpkg/overlay-ports/qtbase/moltenvk.patch
    A buildsys/vcpkg/overlay-ports/qtbase/port.data.cmake
    A buildsys/vcpkg/overlay-ports/qtbase/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qtbase/qmake.debug.bat
    A buildsys/vcpkg/overlay-ports/qtbase/qt.conf.in
    A buildsys/vcpkg/overlay-ports/qtbase/qtpaths.debug.bat
    A buildsys/vcpkg/overlay-ports/qtbase/use-shared-mime-info.patch
    A buildsys/vcpkg/overlay-ports/qtbase/use_inotify_on_freebsd.patch
    A buildsys/vcpkg/overlay-ports/qtbase/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qtbase/windeployqt.debug.bat
    A buildsys/vcpkg/overlay-ports/qtbase/xcodebuild-not-installed.patch
    M programs/us/CMakeLists.txt
    M scripts/bootstrap-linux.sh
    M scripts/build.sh
    A scripts/warm-cache.sh
    M vcpkg.json

  Log Message:
  -----------
  add: nightly build


Compare: https://github.com/ehb54/ultrascan3/compare/a3d889c69f70...56ac62aee0f3

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