[us-commits] [ehb54/ultrascan3] 5a7d47: Remove local filesystem paths from perceiver files

[emre brookes]

  Branch: refs/heads/ehb54-issue-980
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 5a7d47edafebb9346b8cf92280f645c67be9a70f
      https://github.com/ehb54/ultrascan3/commit/5a7d47edafebb9346b8cf92280f645c67be9a70f
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2026-08-08 (Sat, 08 Aug 2026)

  Changed paths:
    M us_somo/develop/perceiver/.gitignore
    M us_somo/develop/perceiver/DECISIONS.md
    M us_somo/develop/perceiver/tools/calibrate_3v_context.py
    M us_somo/develop/perceiver/tools/psv_durchschlag.py
    M us_somo/develop/perceiver/tools/recalc_ligand_volumes.py

  Log Message:
  -----------
  Remove local filesystem paths from perceiver files

The repository is public, so absolute paths from a personal workspace should
not appear in it. Five places carried them, all written by me:

  .gitignore                 a home-directory path naming where the demo PDBs
                             were copied from
  DECISIONS.md               the local clone location
  psv_durchschlag.py         where the source PDFs happened to sit
  calibrate_3v_context.py    a hardcoded default path to Volume.exe
  recalc_ligand_volumes.py   the same

The two tools now resolve Volume.exe from $VOLUME_EXE, else PATH, which is
also what makes them runnable by anyone rather than only where that binary
was built. Behaviour is otherwise unchanged; self-tests still pass.

Refs ehb54/ultrascan-tickets#980

Co-Authored-By: Claude Opus 4.8 <noreply at anthropic.com>



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