[us-commits] [ehb54/us3lims_gridctl] 719f49: add: versioning action

Mon Jun 22 19:29:21 MDT 2026

  Branch: refs/heads/ehb54-issue-552
  Home:   https://github.com/ehb54/us3lims_gridctl
  Commit: 719f49883a5814f9d7e7e25cc309272eff4ebec8
      https://github.com/ehb54/us3lims_gridctl/commit/719f49883a5814f9d7e7e25cc309272eff4ebec8
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-01-24 (Sat, 24 Jan 2026)

  Changed paths:
    A .github/workflows/bump-version.yml

  Log Message:
  -----------
  add: versioning action

  Commit: 98b65e6dc195f5208c4a9daa171a473031aea072
      https://github.com/ehb54/us3lims_gridctl/commit/98b65e6dc195f5208c4a9daa171a473031aea072
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-01-29 (Thu, 29 Jan 2026)

  Changed paths:
    A .github/workflows/bump-version.yml

  Log Message:
  -----------
  Merge pull request #19 from ehb54/versioning

Semantic Versioning Action

  Commit: b544024c52da29b8120eec157709b3744d8134fd
      https://github.com/ehb54/us3lims_gridctl/commit/b544024c52da29b8120eec157709b3744d8134fd
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-16 (Mon, 16 Feb 2026)

  Changed paths:
    M .github/workflows/bump-version.yml

  Log Message:
  -----------
  mod: updated referenced commit sha to latest version

  Commit: 76365b64801e39f7c8e7b67a10c1e986093c0e9c
      https://github.com/ehb54/us3lims_gridctl/commit/76365b64801e39f7c8e7b67a10c1e986093c0e9c
  Author: emre brookes <ehb54 at users.noreply.github.com>
  Date:   2026-02-17 (Tue, 17 Feb 2026)

  Changed paths:
    A autoflow_util/makeafrequest2DSA-CG.php
    M submitone.php

  Log Message:
  -----------
  Merge pull request #18 from ehb54/ehb54-issue-552

issue 552 autoflow backend support for 2DSA-CG

  Commit: 7aa45a2b984b773d36e4d09903829a291dd855c5
      https://github.com/ehb54/us3lims_gridctl/commit/7aa45a2b984b773d36e4d09903829a291dd855c5
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-17 (Tue, 17 Feb 2026)

  Changed paths:
    M .github/workflows/bump-version.yml

  Log Message:
  -----------
  Merge pull request #21 from ehb54/versioning

Updated Versioning Workflow to Latest

  Commit: 9299e856f36d6b086ae0a508a7c9b7447c5c0d5f
      https://github.com/ehb54/us3lims_gridctl/commit/9299e856f36d6b086ae0a508a7c9b7447c5c0d5f
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-06-16 (Tue, 16 Jun 2026)

  Changed paths:
    M .github/workflows/bump-version.yml

  Log Message:
  -----------
  fix: sha commit update

  Commit: 65f411d468ae31e9a7dfa74a8969d609c4aa50b9
      https://github.com/ehb54/us3lims_gridctl/commit/65f411d468ae31e9a7dfa74a8969d609c4aa50b9
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-06-17 (Wed, 17 Jun 2026)

  Changed paths:
    M .github/workflows/bump-version.yml

  Log Message:
  -----------
  Merge pull request #24 from ehb54/900-update-bump-pr-sha-us3lims_gridctl

Fix SHA commit update

  Commit: cf43a7500425d7a2057e708eb198a34abeae95f9
      https://github.com/ehb54/us3lims_gridctl/commit/cf43a7500425d7a2057e708eb198a34abeae95f9
  Author: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
  Date:   2026-06-19 (Fri, 19 Jun 2026)

  Changed paths:
    A VERSION

  Log Message:
  -----------
  Bump version to 4.1.0

  Commit: c96169aa306b38ddf8516d25b1bb3341047be050
      https://github.com/ehb54/us3lims_gridctl/commit/c96169aa306b38ddf8516d25b1bb3341047be050
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-06-19 (Fri, 19 Jun 2026)

  Changed paths:
    A VERSION

  Log Message:
  -----------
  Merge pull request #25 from ehb54/bump-to-v4.1.0

Bump to v4.1.0

  Commit: 2843ec5521e3abaca87929751db9d635958a789e
      https://github.com/ehb54/us3lims_gridctl/commit/2843ec5521e3abaca87929751db9d635958a789e
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2026-06-20 (Sat, 20 Jun 2026)

  Changed paths:
    M cleanup.php
    M jobmonitor/cleanup.php

  Log Message:
  -----------
  Fix race condition causing intermittent "Failed data fetch"

The analysis-results.tar scp had no retry, and the only wait/backoff
loop polled for stderr's arrival, not the tar itself. If the remote
job finished writing stderr before closing the tar, the tar fetch
silently failed and was never retried, leaving gfac.analysis.tarfile
empty even though the job succeeded.

Add a retry to the tar scp matching stdout/stderr, and a dedicated
backoff loop that re-checks for and re-fetches the tar before giving
up. Applied identically to cleanup.php and jobmonitor/cleanup.php.

Fixes ehb54/ultrascan-tickets#914

  Commit: 299622e1aa03a28eb4bc2874245e56e64cce1aa5
      https://github.com/ehb54/us3lims_gridctl/commit/299622e1aa03a28eb4bc2874245e56e64cce1aa5
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2026-06-20 (Sat, 20 Jun 2026)

  Changed paths:
    M cleanup.php
    M jobmonitor/cleanup.php

  Log Message:
  -----------
  Add curly braces around single-statement if blocks (SonarCloud)

  Commit: 31337ffaf7aec158264331b22425837f3697d050
      https://github.com/ehb54/us3lims_gridctl/commit/31337ffaf7aec158264331b22425837f3697d050
  Author: emre brookes <ehb54 at users.noreply.github.com>
  Date:   2026-06-20 (Sat, 20 Jun 2026)

  Changed paths:
    M cleanup.php
    M jobmonitor/cleanup.php

  Log Message:
  -----------
  Merge pull request #26 from ehb54/ehb54-issue-914

Fix race condition causing intermittent "Failed data fetch"

  Commit: 7314df59df76c69f5b7650b1f79273e98c855fdc
      https://github.com/ehb54/us3lims_gridctl/commit/7314df59df76c69f5b7650b1f79273e98c855fdc
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2026-06-22 (Mon, 22 Jun 2026)

  Changed paths:
    M submitone.php

  Log Message:
  -----------
  Detect job submission failures in submitone.php's CLI error checks

The included web pages (2DSA_1.php/2DSA_2.php, PCSA_1.php/PCSA_2.php,
etc.) never push job submission failures into $cli_errors themselves
- they only echo an ERROR: line into the dumped output. As a result,
submitone.php's check_cli_errors() saw an empty array and proceeded
as if the submission had succeeded, even when it hadn't (e.g. the
sbatch failure case fixed in ehb54/us3lims_common#21).

Add check_cli_errors_in_dump(), which scans the dump file for any
ERROR: line and folds it into $cli_errors, called right before
check_cli_errors() after both the PCSA and 2DSA job-type includes.

This doesn't change GMP/autoflow's own failure detection, which
already polls autoflowAnalysis.status directly - it only gives
submitone.php its own immediate signal that a submission it just ran
failed.

Fixes ehb54/ultrascan-tickets#917

  Commit: 5d00d5db8381168ffca0014e20c8e48ce3d7402a
      https://github.com/ehb54/us3lims_gridctl/commit/5d00d5db8381168ffca0014e20c8e48ce3d7402a
  Author: emre brookes <ehb54 at users.noreply.github.com>
  Date:   2026-06-22 (Mon, 22 Jun 2026)

  Changed paths:
    M submitone.php

  Log Message:
  -----------
  Merge pull request #27 from ehb54/ehb54-issue-917

Detect job submission failures in submitone.php's CLI error checks

  Commit: b7ffea2940147df0efdf005388624421f8dd4b96
      https://github.com/ehb54/us3lims_gridctl/commit/b7ffea2940147df0efdf005388624421f8dd4b96
  Author: emre brookes <ehb54 at users.noreply.github.com>
  Date:   2026-06-22 (Mon, 22 Jun 2026)

  Changed paths:
    A .github/workflows/bump-version.yml
    A VERSION
    M cleanup.php
    M jobmonitor/cleanup.php
    M submitone.php

  Log Message:
  -----------
  Merge pull request #28 from ehb54/main

Enhance versioning action and fix job submission error detection

Compare: https://github.com/ehb54/us3lims_gridctl/compare/65a14e693b4e...b7ffea294014

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