From noreply at github.com  Mon Mar  2 01:08:50 2026
From: noreply at github.com (Lukas Dobler)
Date: Mon, 02 Mar 2026 00:08:50 -0800
Subject: [us-commits] [ehb54/ultrascan3] 096f35: Fix type casting for GCM
 tag data
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_crypto_buffer_overflow/817a32-096f35@github.com>

  Branch: refs/heads/lukas/us_crypto_buffer_overflow
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 096f3590c1a57a798a0c13863e80d333a690b4cf
      https://github.com/ehb54/ultrascan3/commit/096f3590c1a57a798a0c13863e80d333a690b4cf
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix type casting for GCM tag data



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From noreply at github.com  Mon Mar  2 02:38:08 2026
From: noreply at github.com (Lukas Dobler)
Date: Mon, 02 Mar 2026 01:38:08 -0800
Subject: [us-commits] [ehb54/ultrascan3] ca6f56: Fix type casting for GCM
 tag in us_crypto.cpp
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_crypto_buffer_overflow/096f35-ca6f56@github.com>

  Branch: refs/heads/lukas/us_crypto_buffer_overflow
  Home:   https://github.com/ehb54/ultrascan3
  Commit: ca6f560338cfe03c4fa0e60bb95577b526dbf2ed
      https://github.com/ehb54/ultrascan3/commit/ca6f560338cfe03c4fa0e60bb95577b526dbf2ed
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix type casting for GCM tag in us_crypto.cpp



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From noreply at github.com  Mon Mar  2 15:01:25 2026
From: noreply at github.com (aaron-auc)
Date: Mon, 02 Mar 2026 14:01:25 -0800
Subject: [us-commits] [ehb54/ultrascan3] 7f6328: fix: fix qt help search and
 implement dmg
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/85100e-88ef4e@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 7f63285b165bc88c2a317f9f368082e0d24d8861
      https://github.com/ehb54/ultrascan3/commit/7f63285b165bc88c2a317f9f368082e0d24d8861
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-28 (Sat, 28 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    A admin/cmake/MacDeploy.cmake
    R buildsys/vcpkg/overlay-ports/qt5-tools/fix-pkgconfig-qt5uiplugin-not-found.patch
    R buildsys/vcpkg/overlay-ports/qt5-tools/fix-spawnvp-argv.patch
    R buildsys/vcpkg/overlay-ports/qt5-tools/libclang.patch
    R buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    R buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    M doc/manual/CMakeLists.txt
    A doc/manual/StageAssistant.cmake
    M doc/manual/source/mwl_spectra.rst
    M gui/CMakeLists.txt
    M gui/us_help.cpp
    M programs/us_helpdaemon/us_helpdaemon.cpp
    M qwtplot3d/CMakeLists.txt
    M scripts/build.sh
    M vcpkg.json

  Log Message:
  -----------
  fix: fix qt help search and implement dmg


  Commit: 8e3d67b30d1a4eaf6faf0d18d80a835288ee5ae7
      https://github.com/ehb54/ultrascan3/commit/8e3d67b30d1a4eaf6faf0d18d80a835288ee5ae7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-28 (Sat, 28 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    R admin/cmake/toolchain-macos.cmake
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M gui/us_spectrodata.h
    M programs/us/CMakeLists.txt
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    M vcpkg.json

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2

# Conflicts:
#	.gitignore
#	scripts/build.sh


  Commit: ef3356b450a93ec526f92ee27da0a9bfcfa9c04a
      https://github.com/ehb54/ultrascan3/commit/ef3356b450a93ec526f92ee27da0a9bfcfa9c04a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-01 (Sun, 01 Mar 2026)

  Changed paths:
    M LICENSE.txt

  Log Message:
  -----------
  fix: text was original utf-8 so quotes became questions marks with ascii tool. Changed ? to ascii quotes.


  Commit: 82c2dc2269b90376cf1f69ca3f88b4bee38c641e
      https://github.com/ehb54/ultrascan3/commit/82c2dc2269b90376cf1f69ca3f88b4bee38c641e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    R admin/cmake/MacDeploy.cmake
    A admin/cmake/packaging/macos/MacDeploy.cmake
    A admin/cmake/packaging/macos/MacOsPkg.cmake
    A pkg/macos/component.plist
    A pkg/macos/distribution.xml.in
    A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist
    A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3
    A pkg/macos/postinstall
    A pkg/macos/preinstall
    A pkg/macos/resources/Welcome.txt.in
    A pkg/macos/resources/background.png
    A pkg/macos/ultrascan_sysctl.plist
    A pkg/macos/uninstall.sh
    M scripts/build.sh

  Log Message:
  -----------
  add: launcher and packaging step


  Commit: 88ef4e481d1b4ea751d997b156e3782f1befce93
      https://github.com/ehb54/ultrascan3/commit/88ef4e481d1b4ea751d997b156e3782f1befce93
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    M admin/cmake/packaging/macos/MacDeploy.cmake
    M admin/cmake/toolchain.cmake
    M doc/manual/CMakeLists.txt
    M doc/manual/StageAssistant.cmake

  Log Message:
  -----------
  add: working qt6 build and install


Compare: https://github.com/ehb54/ultrascan3/compare/85100ef73842...88ef4e481d1b

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From noreply at github.com  Tue Mar  3 13:13:01 2026
From: noreply at github.com (emre brookes)
Date: Tue, 03 Mar 2026 12:13:01 -0800
Subject: [us-commits] [ehb54/ultrascan3] 765b73: somo mals broaden
Message-ID: <ehb54/ultrascan3/push/refs/heads/somo-dev/685dfd-765b73@github.com>

  Branch: refs/heads/somo-dev
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 765b736bdb729b5801c06f617a77cc913a461649
      https://github.com/ehb54/ultrascan3/commit/765b736bdb729b5801c06f617a77cc913a461649
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2026-03-03 (Tue, 03 Mar 2026)

  Changed paths:
    M us_somo/develop/include/us_hydrodyn_mals.h
    M us_somo/develop/include/us_hydrodyn_saxs_hplc.h
    A us_somo/develop/include/us_revision.h
    M us_somo/develop/include/us_version.h
    M us_somo/develop/libus_somo.pro
    M us_somo/develop/src/us_hydrodyn_mals_gui.cpp
    A us_somo/develop/src/us_hydrodyn_mals_modes_broaden.cpp
    M us_somo/develop/src/us_hydrodyn_mals_plots.cpp
    M us_somo/develop/src/us_hydrodyn_mals_util.cpp

  Log Message:
  -----------
  somo mals broaden



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From noreply at github.com  Wed Mar  4 13:31:18 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 04 Mar 2026 12:31:18 -0800
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/773-request-update-us-3-gmp-icons/000000-38b548@github.com>

  Branch: refs/heads/773-request-update-us-3-gmp-icons
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Wed Mar  4 16:10:25 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 04 Mar 2026 15:10:25 -0800
Subject: [us-commits] [ehb54/ultrascan3] d1215a: mod: update 128x128 us-gmp
 icon and remove others
Message-ID: <ehb54/ultrascan3/push/refs/heads/773-request-update-us-3-gmp-icons/38b548-d1215a@github.com>

  Branch: refs/heads/773-request-update-us-3-gmp-icons
  Home:   https://github.com/ehb54/ultrascan3
  Commit: d1215ab67e2f9e4aa0bcf349eac8da7f58a9be6a
      https://github.com/ehb54/ultrascan3/commit/d1215ab67e2f9e4aa0bcf349eac8da7f58a9be6a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm

  Log Message:
  -----------
  mod: update 128x128 us-gmp icon and remove others



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From noreply at github.com  Wed Mar  4 16:14:36 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 04 Mar 2026 15:14:36 -0800
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/775-bug-svn-files/000000-d1215a@github.com>

  Branch: refs/heads/775-bug-svn-files
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Wed Mar  4 16:15:42 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 04 Mar 2026 15:15:42 -0800
Subject: [us-commits] [ehb54/ultrascan3] ff0214: mod: delete svn files
Message-ID: <ehb54/ultrascan3/push/refs/heads/775-bug-svn-files/d1215a-ff0214@github.com>

  Branch: refs/heads/775-bug-svn-files
  Home:   https://github.com/ehb54/ultrascan3
  Commit: ff02149480e771cbc205a241cee2322ae52a5ea3
      https://github.com/ehb54/ultrascan3/commit/ff02149480e771cbc205a241cee2322ae52a5ea3
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R propignore
    R proppng
    R proptext

  Log Message:
  -----------
  mod: delete svn files



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From noreply at github.com  Wed Mar  4 17:02:26 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 04 Mar 2026 16:02:26 -0800
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/756-bug-translation-maintenance/000000-ff0214@github.com>

  Branch: refs/heads/756-bug-translation-maintenance
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Wed Mar  4 17:04:44 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 04 Mar 2026 16:04:44 -0800
Subject: [us-commits] [ehb54/ultrascan3] 0d744f: mod: remove deprecated
 translation files and settings
Message-ID: <ehb54/ultrascan3/push/refs/heads/756-bug-translation-maintenance/ff0214-0d744f@github.com>

  Branch: refs/heads/756-bug-translation-maintenance
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 0d744f1905b897d66da68befb43637e8ac4cd7bc
      https://github.com/ehb54/ultrascan3/commit/0d744f1905b897d66da68befb43637e8ac4cd7bc
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R README.linguist
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  mod: remove deprecated translation files and settings



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From noreply at github.com  Wed Mar  4 18:34:07 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 04 Mar 2026 17:34:07 -0800
Subject: [us-commits] [ehb54/ultrascan3] 04583d: add: windows installer
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/88ef4e-20b958@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 04583d8a1b0bcf01875f31b93a12343610284126
      https://github.com/ehb54/ultrascan3/commit/04583d8a1b0bcf01875f31b93a12343610284126
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    A admin/cmake/packaging/windows/WinDeploy.cmake
    A admin/cmake/packaging/windows/WinPkg.cmake

  Log Message:
  -----------
  add: windows installer


  Commit: 20b958cec1d253988daedd88a2fec65efd28448d
      https://github.com/ehb54/ultrascan3/commit/20b958cec1d253988daedd88a2fec65efd28448d
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  add: pkg command to build.ps1


Compare: https://github.com/ehb54/ultrascan3/compare/88ef4e481d1b...20b958cec1d2

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From noreply at github.com  Wed Mar  4 19:08:20 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 04 Mar 2026 18:08:20 -0800
Subject: [us-commits] [ehb54/ultrascan3] d1215a: mod: update 128x128 us-gmp
 icon and remove others
Message-ID: <ehb54/ultrascan3/push/refs/heads/main/38b548-722ffd@github.com>

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/ultrascan3
  Commit: d1215ab67e2f9e4aa0bcf349eac8da7f58a9be6a
      https://github.com/ehb54/ultrascan3/commit/d1215ab67e2f9e4aa0bcf349eac8da7f58a9be6a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm

  Log Message:
  -----------
  mod: update 128x128 us-gmp icon and remove others


  Commit: 722ffd5c4e0c7d1f2f2c27127e065270ae3c7598
      https://github.com/ehb54/ultrascan3/commit/722ffd5c4e0c7d1f2f2c27127e065270ae3c7598
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm

  Log Message:
  -----------
  Merge pull request #380 from ehb54/773-request-update-us-3-gmp-icons

Icon Maintenance


Compare: https://github.com/ehb54/ultrascan3/compare/38b548536c2c...722ffd5c4e0c

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From noreply at github.com  Wed Mar  4 19:08:40 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 04 Mar 2026 18:08:40 -0800
Subject: [us-commits] [ehb54/ultrascan3] 722ffd: Merge pull request #380
 from ehb54/773-request-upd...
Message-ID: <ehb54/ultrascan3/push/refs/heads/775-bug-svn-files/ff0214-47dbf4@github.com>

  Branch: refs/heads/775-bug-svn-files
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 722ffd5c4e0c7d1f2f2c27127e065270ae3c7598
      https://github.com/ehb54/ultrascan3/commit/722ffd5c4e0c7d1f2f2c27127e065270ae3c7598
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm

  Log Message:
  -----------
  Merge pull request #380 from ehb54/773-request-update-us-3-gmp-icons

Icon Maintenance


  Commit: 47dbf4a3837c551d64f6436f25aa7f5f7d482fad
      https://github.com/ehb54/ultrascan3/commit/47dbf4a3837c551d64f6436f25aa7f5f7d482fad
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:

  Log Message:
  -----------
  Merge branch 'main' into 775-bug-svn-files


Compare: https://github.com/ehb54/ultrascan3/compare/ff02149480e7...47dbf4a3837c

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From noreply at github.com  Wed Mar  4 19:09:12 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 04 Mar 2026 18:09:12 -0800
Subject: [us-commits] [ehb54/ultrascan3] 722ffd: Merge pull request #380
 from ehb54/773-request-upd...
Message-ID: <ehb54/ultrascan3/push/refs/heads/756-bug-translation-maintenance/0d744f-93fb5f@github.com>

  Branch: refs/heads/756-bug-translation-maintenance
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 722ffd5c4e0c7d1f2f2c27127e065270ae3c7598
      https://github.com/ehb54/ultrascan3/commit/722ffd5c4e0c7d1f2f2c27127e065270ae3c7598
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm

  Log Message:
  -----------
  Merge pull request #380 from ehb54/773-request-update-us-3-gmp-icons

Icon Maintenance


  Commit: 93fb5f9f839b1aea6d85ed568acc18030ebed5c1
      https://github.com/ehb54/ultrascan3/commit/93fb5f9f839b1aea6d85ed568acc18030ebed5c1
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:

  Log Message:
  -----------
  Merge branch 'main' into 756-bug-translation-maintenance


Compare: https://github.com/ehb54/ultrascan3/compare/0d744f1905b8...93fb5f9f839b

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From noreply at github.com  Wed Mar  4 20:26:49 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 04 Mar 2026 19:26:49 -0800
Subject: [us-commits] [ehb54/ultrascan3] ff0214: mod: delete svn files
Message-ID: <ehb54/ultrascan3/push/refs/heads/main/722ffd-fe5370@github.com>

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/ultrascan3
  Commit: ff02149480e771cbc205a241cee2322ae52a5ea3
      https://github.com/ehb54/ultrascan3/commit/ff02149480e771cbc205a241cee2322ae52a5ea3
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R propignore
    R proppng
    R proptext

  Log Message:
  -----------
  mod: delete svn files


  Commit: 47dbf4a3837c551d64f6436f25aa7f5f7d482fad
      https://github.com/ehb54/ultrascan3/commit/47dbf4a3837c551d64f6436f25aa7f5f7d482fad
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:

  Log Message:
  -----------
  Merge branch 'main' into 775-bug-svn-files


  Commit: fe5370afd345acf40744a8c872c09eef88887bba
      https://github.com/ehb54/ultrascan3/commit/fe5370afd345acf40744a8c872c09eef88887bba
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R propignore
    R proppng
    R proptext

  Log Message:
  -----------
  Merge pull request #381 from ehb54/775-bug-svn-files

Remove Legacy SVN Files


Compare: https://github.com/ehb54/ultrascan3/compare/722ffd5c4e0c...fe5370afd345

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From noreply at github.com  Wed Mar  4 20:27:07 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 04 Mar 2026 19:27:07 -0800
Subject: [us-commits] [ehb54/ultrascan3] 47dbf4: Merge branch 'main' into
 775-bug-svn-files
Message-ID: <ehb54/ultrascan3/push/refs/heads/756-bug-translation-maintenance/93fb5f-b1b7bd@github.com>

  Branch: refs/heads/756-bug-translation-maintenance
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 47dbf4a3837c551d64f6436f25aa7f5f7d482fad
      https://github.com/ehb54/ultrascan3/commit/47dbf4a3837c551d64f6436f25aa7f5f7d482fad
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:

  Log Message:
  -----------
  Merge branch 'main' into 775-bug-svn-files


  Commit: fe5370afd345acf40744a8c872c09eef88887bba
      https://github.com/ehb54/ultrascan3/commit/fe5370afd345acf40744a8c872c09eef88887bba
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R propignore
    R proppng
    R proptext

  Log Message:
  -----------
  Merge pull request #381 from ehb54/775-bug-svn-files

Remove Legacy SVN Files


  Commit: b1b7bdf318164406971f4188a7b3cf8b0aacbbaa
      https://github.com/ehb54/ultrascan3/commit/b1b7bdf318164406971f4188a7b3cf8b0aacbbaa
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:

  Log Message:
  -----------
  Merge branch 'main' into 756-bug-translation-maintenance


Compare: https://github.com/ehb54/ultrascan3/compare/93fb5f9f839b...b1b7bdf31816

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From noreply at github.com  Wed Mar  4 20:58:29 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 04 Mar 2026 19:58:29 -0800
Subject: [us-commits] [ehb54/ultrascan3] 0d744f: mod: remove deprecated
 translation files and settings
Message-ID: <ehb54/ultrascan3/push/refs/heads/main/fe5370-90e9cf@github.com>

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 0d744f1905b897d66da68befb43637e8ac4cd7bc
      https://github.com/ehb54/ultrascan3/commit/0d744f1905b897d66da68befb43637e8ac4cd7bc
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R README.linguist
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  mod: remove deprecated translation files and settings


  Commit: 93fb5f9f839b1aea6d85ed568acc18030ebed5c1
      https://github.com/ehb54/ultrascan3/commit/93fb5f9f839b1aea6d85ed568acc18030ebed5c1
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:

  Log Message:
  -----------
  Merge branch 'main' into 756-bug-translation-maintenance


  Commit: b1b7bdf318164406971f4188a7b3cf8b0aacbbaa
      https://github.com/ehb54/ultrascan3/commit/b1b7bdf318164406971f4188a7b3cf8b0aacbbaa
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:

  Log Message:
  -----------
  Merge branch 'main' into 756-bug-translation-maintenance


  Commit: 90e9cf2eb989a85420f4668067092a143d4457a9
      https://github.com/ehb54/ultrascan3/commit/90e9cf2eb989a85420f4668067092a143d4457a9
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R README.linguist
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  Merge pull request #382 from ehb54/756-bug-translation-maintenance

Translation File Maintenance


Compare: https://github.com/ehb54/ultrascan3/compare/fe5370afd345...90e9cf2eb989

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From noreply at github.com  Wed Mar  4 20:58:48 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 04 Mar 2026 19:58:48 -0800
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/756-bug-translation-maintenance/b1b7bd-000000@github.com>

  Branch: refs/heads/756-bug-translation-maintenance
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Wed Mar  4 20:59:02 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 04 Mar 2026 19:59:02 -0800
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/775-bug-svn-files/47dbf4-000000@github.com>

  Branch: refs/heads/775-bug-svn-files
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Wed Mar  4 20:59:19 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 04 Mar 2026 19:59:19 -0800
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/773-request-update-us-3-gmp-icons/d1215a-000000@github.com>

  Branch: refs/heads/773-request-update-us-3-gmp-icons
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Wed Mar  4 21:48:11 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 04 Mar 2026 20:48:11 -0800
Subject: [us-commits] [ehb54/ultrascan3] 2698e0: fix: missing programs in
 installer package
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/20b958-2698e0@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 2698e05dd320a374785cab43ed05a52db3c5c3a7
      https://github.com/ehb54/ultrascan3/commit/2698e05dd320a374785cab43ed05a52db3c5c3a7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinPkg.cmake
    M scripts/build.ps1

  Log Message:
  -----------
  fix: missing programs in installer package



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From noreply at github.com  Wed Mar  4 21:59:39 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 04 Mar 2026 20:59:39 -0800
Subject: [us-commits] [ehb54/ultrascan3] 499648: fix: missing sphinx on
 windows build
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/2698e0-499648@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 499648d1ea27751d008981e0d9f1447cfbef7072
      https://github.com/ehb54/ultrascan3/commit/499648d1ea27751d008981e0d9f1447cfbef7072
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M scripts/build.ps1

  Log Message:
  -----------
  fix: missing sphinx on windows build



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From noreply at github.com  Thu Mar  5 00:57:23 2026
From: noreply at github.com (Lukas Dobler)
Date: Wed, 04 Mar 2026 23:57:23 -0800
Subject: [us-commits] [ehb54/ultrascan3] d1215a: mod: update 128x128 us-gmp
 icon and remove others
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_crypto_buffer_overflow/ca6f56-300852@github.com>

  Branch: refs/heads/lukas/us_crypto_buffer_overflow
  Home:   https://github.com/ehb54/ultrascan3
  Commit: d1215ab67e2f9e4aa0bcf349eac8da7f58a9be6a
      https://github.com/ehb54/ultrascan3/commit/d1215ab67e2f9e4aa0bcf349eac8da7f58a9be6a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm

  Log Message:
  -----------
  mod: update 128x128 us-gmp icon and remove others


  Commit: ff02149480e771cbc205a241cee2322ae52a5ea3
      https://github.com/ehb54/ultrascan3/commit/ff02149480e771cbc205a241cee2322ae52a5ea3
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R propignore
    R proppng
    R proptext

  Log Message:
  -----------
  mod: delete svn files


  Commit: 0d744f1905b897d66da68befb43637e8ac4cd7bc
      https://github.com/ehb54/ultrascan3/commit/0d744f1905b897d66da68befb43637e8ac4cd7bc
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R README.linguist
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  mod: remove deprecated translation files and settings


  Commit: 722ffd5c4e0c7d1f2f2c27127e065270ae3c7598
      https://github.com/ehb54/ultrascan3/commit/722ffd5c4e0c7d1f2f2c27127e065270ae3c7598
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm

  Log Message:
  -----------
  Merge pull request #380 from ehb54/773-request-update-us-3-gmp-icons

Icon Maintenance


  Commit: 47dbf4a3837c551d64f6436f25aa7f5f7d482fad
      https://github.com/ehb54/ultrascan3/commit/47dbf4a3837c551d64f6436f25aa7f5f7d482fad
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:

  Log Message:
  -----------
  Merge branch 'main' into 775-bug-svn-files


  Commit: 93fb5f9f839b1aea6d85ed568acc18030ebed5c1
      https://github.com/ehb54/ultrascan3/commit/93fb5f9f839b1aea6d85ed568acc18030ebed5c1
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:

  Log Message:
  -----------
  Merge branch 'main' into 756-bug-translation-maintenance


  Commit: fe5370afd345acf40744a8c872c09eef88887bba
      https://github.com/ehb54/ultrascan3/commit/fe5370afd345acf40744a8c872c09eef88887bba
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R propignore
    R proppng
    R proptext

  Log Message:
  -----------
  Merge pull request #381 from ehb54/775-bug-svn-files

Remove Legacy SVN Files


  Commit: b1b7bdf318164406971f4188a7b3cf8b0aacbbaa
      https://github.com/ehb54/ultrascan3/commit/b1b7bdf318164406971f4188a7b3cf8b0aacbbaa
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:

  Log Message:
  -----------
  Merge branch 'main' into 756-bug-translation-maintenance


  Commit: 90e9cf2eb989a85420f4668067092a143d4457a9
      https://github.com/ehb54/ultrascan3/commit/90e9cf2eb989a85420f4668067092a143d4457a9
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R README.linguist
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  Merge pull request #382 from ehb54/756-bug-translation-maintenance

Translation File Maintenance


  Commit: 300852b8d51c2733817729fab46d6d0e68f5e717
      https://github.com/ehb54/ultrascan3/commit/300852b8d51c2733817729fab46d6d0e68f5e717
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_crypto_buffer_overflow


Compare: https://github.com/ehb54/ultrascan3/compare/ca6f560338cf...300852b8d51c

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From noreply at github.com  Thu Mar  5 06:00:46 2026
From: noreply at github.com (Lukas Dobler)
Date: Thu, 05 Mar 2026 05:00:46 -0800
Subject: [us-commits] [ehb54/ultrascan3] d287d2: us_spectrodata: add
 hydrodynamic radius to S_Solute
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/timestate/929691-9c62b5@github.com>

  Branch: refs/heads/lukas/timestate
  Home:   https://github.com/ehb54/ultrascan3
  Commit: d287d24ac45d15c14c50dffde79d3abcf44e1c47
      https://github.com/ehb54/ultrascan3/commit/d287d24ac45d15c14c50dffde79d3abcf44e1c47
  Author: Saeed <github.com/samo38>
  Date:   2026-02-06 (Fri, 06 Feb 2026)

  Changed paths:
    M gui/us_spectrodata.h

  Log Message:
  -----------
  us_spectrodata: add hydrodynamic radius to S_Solute


  Commit: 1a9eda0deabbf567b25ddd721c01232463c6d549
      https://github.com/ehb54/ultrascan3/commit/1a9eda0deabbf567b25ddd721c01232463c6d549
  Author: Saeed <github.com/samo38>
  Date:   2026-02-06 (Fri, 06 Feb 2026)

  Changed paths:
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h

  Log Message:
  -----------
  us_integral: replace SolParam with S_Solute


  Commit: f422eaebafa361f357d0b27d3f56d3f4d3247f8e
      https://github.com/ehb54/ultrascan3/commit/f422eaebafa361f357d0b27d3f56d3f4d3247f8e
  Author: Saeed <github.com/samo38>
  Date:   2026-02-10 (Tue, 10 Feb 2026)

  Changed paths:
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h

  Log Message:
  -----------
  us_ga_init: add Rh


  Commit: b4b6df18011d41ed7209dca2fa4580a93512d976
      https://github.com/ehb54/ultrascan3/commit/b4b6df18011d41ed7209dca2fa4580a93512d976
  Author: Saeed <github.com/samo38>
  Date:   2026-02-11 (Wed, 11 Feb 2026)

  Changed paths:
    M programs/us_ga_init/us_solutedata.cpp

  Log Message:
  -----------
  us_ga_init/us_solutedata: add Hr to the report file


  Commit: a10c820b1808470ff1529c74ae9e8cbb6f2db80f
      https://github.com/ehb54/ultrascan3/commit/a10c820b1808470ff1529c74ae9e8cbb6f2db80f
  Author: Saeed <github.com/samo38>
  Date:   2026-02-11 (Wed, 11 Feb 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h

  Log Message:
  -----------
  us_ddist_combine: add Rh to the discrete distributions program


  Commit: 3e454dd1eca619263c23dc1206fe22fb60c737c4
      https://github.com/ehb54/ultrascan3/commit/3e454dd1eca619263c23dc1206fe22fb60c737c4
  Author: Saeed <github.com/samo38>
  Date:   2026-02-11 (Wed, 11 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_proto_ranges.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_699


  Commit: 482dbb495512e7628e78756240055909d096c476
      https://github.com/ehb54/ultrascan3/commit/482dbb495512e7628e78756240055909d096c476
  Author: Saeed <github.com/samo38>
  Date:   2026-02-12 (Thu, 12 Feb 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_modelmetrics/us_modelmetrics.cpp

  Log Message:
  -----------
  us nm unit for hydrodynamic radius


  Commit: 678ff7f6c7bed9024cc5f25e855c87b95ed0db50
      https://github.com/ehb54/ultrascan3/commit/678ff7f6c7bed9024cc5f25e855c87b95ed0db50
  Author: Saeed Mortezazadeh <saeed.mortezazadeh25 at gmail.com>
  Date:   2026-02-17 (Tue, 17 Feb 2026)

  Changed paths:
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h

  Log Message:
  -----------
  us_ga_init: replace plot checkboxs with radiobuttons


  Commit: d787112c42145adc032e986e17be63d8efd5dfda
      https://github.com/ehb54/ultrascan3/commit/d787112c42145adc032e986e17be63d8efd5dfda
  Author: Saeed <github.com/samo38>
  Date:   2026-02-19 (Thu, 19 Feb 2026)

  Changed paths:
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h

  Log Message:
  -----------
  add check_draw_btn


  Commit: ba06a7cd941b1bb63391e1fba5d30baf782f4d3e
      https://github.com/ehb54/ultrascan3/commit/ba06a7cd941b1bb63391e1fba5d30baf782f4d3e
  Author: Saeed <github.com/samo38>
  Date:   2026-02-19 (Thu, 19 Feb 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    A admin/cmake/toolchain-macos.cmake
    A admin/cmake/triplets/arm64-osx-dynamic.cmake
    M admin/cmake/triplets/x64-osx-dynamic.cmake
    R alpha/srcdevel
    R alpha/us.cpp
    M gui/us_analysis_base2.cpp
    M gui/us_analysis_base2.h
    M gui/us_model_loader.cpp
    M gui/us_plot.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_2dsa/us_2dsa.h
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_dcdt/us_dcdt.cpp
    M programs/us_dcdt/us_dcdt.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_fit_meniscus/CMakeLists.txt
    M programs/us_fit_meniscus/us_fit_meniscus.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h
    M programs/us_pcsa/us_pcsa.cpp
    M programs/us_pcsa/us_pcsa.h
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_second_moment/us_second_moment.cpp
    M programs/us_second_moment/us_second_moment.h
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.h
    M scripts/build.sh
    A test/utils/test_us_regex.cpp
    M utils/CMakeLists.txt

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_699


  Commit: a6fe9c7b13c638a88e1390c744efd98cbec59acf
      https://github.com/ehb54/ultrascan3/commit/a6fe9c7b13c638a88e1390c744efd98cbec59acf
  Author: Saeed Mortezazadeh <saeed.mortezazadeh25 at gmail.com>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp

  Log Message:
  -----------
  add anno_label(int) to us_ga_init


  Commit: b1b7791e9c3922286c2d9d56c2f0a378911720ee
      https://github.com/ehb54/ultrascan3/commit/b1b7791e9c3922286c2d9d56c2f0a378911720ee
  Author: Saeed <github.com/samo38>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h

  Log Message:
  -----------
  add Rh to us_pseudo3d_combine


  Commit: bd32e3b102e354732b319bc5687719785b83d3f2
      https://github.com/ehb54/ultrascan3/commit/bd32e3b102e354732b319bc5687719785b83d3f2
  Author: Saeed <github.com/samo38>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    R admin/cmake/toolchain-macos.cmake
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M gui/us_report_gui.cpp
    M programs/us/CMakeLists.txt
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    R vcpkg
    M vcpkg.json

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_699


  Commit: 38b548536c2c0458b2cc85f5663ca56eb9538f3f
      https://github.com/ehb54/ultrascan3/commit/38b548536c2c0458b2cc85f5663ca56eb9538f3f
  Author: HabGab <gabirh at myumanitoba.ca>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M gui/us_spectrodata.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h

  Log Message:
  -----------
  Merge pull request #362 from samo38/ticket_699

Ticket 699: adding Hydrodynamic radius to additional plotting programs


  Commit: d1215ab67e2f9e4aa0bcf349eac8da7f58a9be6a
      https://github.com/ehb54/ultrascan3/commit/d1215ab67e2f9e4aa0bcf349eac8da7f58a9be6a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm

  Log Message:
  -----------
  mod: update 128x128 us-gmp icon and remove others


  Commit: ff02149480e771cbc205a241cee2322ae52a5ea3
      https://github.com/ehb54/ultrascan3/commit/ff02149480e771cbc205a241cee2322ae52a5ea3
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R propignore
    R proppng
    R proptext

  Log Message:
  -----------
  mod: delete svn files


  Commit: 0d744f1905b897d66da68befb43637e8ac4cd7bc
      https://github.com/ehb54/ultrascan3/commit/0d744f1905b897d66da68befb43637e8ac4cd7bc
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R README.linguist
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  mod: remove deprecated translation files and settings


  Commit: 722ffd5c4e0c7d1f2f2c27127e065270ae3c7598
      https://github.com/ehb54/ultrascan3/commit/722ffd5c4e0c7d1f2f2c27127e065270ae3c7598
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm

  Log Message:
  -----------
  Merge pull request #380 from ehb54/773-request-update-us-3-gmp-icons

Icon Maintenance


  Commit: 47dbf4a3837c551d64f6436f25aa7f5f7d482fad
      https://github.com/ehb54/ultrascan3/commit/47dbf4a3837c551d64f6436f25aa7f5f7d482fad
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:

  Log Message:
  -----------
  Merge branch 'main' into 775-bug-svn-files


  Commit: 93fb5f9f839b1aea6d85ed568acc18030ebed5c1
      https://github.com/ehb54/ultrascan3/commit/93fb5f9f839b1aea6d85ed568acc18030ebed5c1
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:

  Log Message:
  -----------
  Merge branch 'main' into 756-bug-translation-maintenance


  Commit: fe5370afd345acf40744a8c872c09eef88887bba
      https://github.com/ehb54/ultrascan3/commit/fe5370afd345acf40744a8c872c09eef88887bba
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R propignore
    R proppng
    R proptext

  Log Message:
  -----------
  Merge pull request #381 from ehb54/775-bug-svn-files

Remove Legacy SVN Files


  Commit: b1b7bdf318164406971f4188a7b3cf8b0aacbbaa
      https://github.com/ehb54/ultrascan3/commit/b1b7bdf318164406971f4188a7b3cf8b0aacbbaa
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:

  Log Message:
  -----------
  Merge branch 'main' into 756-bug-translation-maintenance


  Commit: 90e9cf2eb989a85420f4668067092a143d4457a9
      https://github.com/ehb54/ultrascan3/commit/90e9cf2eb989a85420f4668067092a143d4457a9
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R README.linguist
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  Merge pull request #382 from ehb54/756-bug-translation-maintenance

Translation File Maintenance


  Commit: 9c62b533654400def76e5db0eb8c8f4924ff66d1
      https://github.com/ehb54/ultrascan3/commit/9c62b533654400def76e5db0eb8c8f4924ff66d1
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_spectrodata.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  Merge pull request #383 from ehb54/main

Update feature branch to main


Compare: https://github.com/ehb54/ultrascan3/compare/92969167df27...9c62b5336544

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From noreply at github.com  Thu Mar  5 08:19:01 2026
From: noreply at github.com (Lukas Dobler)
Date: Thu, 05 Mar 2026 07:19:01 -0800
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_crypto_buffer_overflow/300852-000000@github.com>

  Branch: refs/heads/lukas/us_crypto_buffer_overflow
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Thu Mar  5 08:18:58 2026
From: noreply at github.com (Lukas Dobler)
Date: Thu, 05 Mar 2026 07:18:58 -0800
Subject: [us-commits] [ehb54/ultrascan3] 6dd71c: Refactor US_Crypto for
 AES-256-GCM encryption
Message-ID: <ehb54/ultrascan3/push/refs/heads/main/90e9cf-0f7d00@github.com>

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 6dd71c26fbdb258b25259c7c5e41be982d54a809
      https://github.com/ehb54/ultrascan3/commit/6dd71c26fbdb258b25259c7c5e41be982d54a809
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Refactor US_Crypto for AES-256-GCM encryption


  Commit: 1461b65d9eae700e3429db2b7c19c35361fea861
      https://github.com/ehb54/ultrascan3/commit/1461b65d9eae700e3429db2b7c19c35361fea861
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.h

  Log Message:
  -----------
  Add decryptLegacy function and update decrypt signature


  Commit: ed2647558eb754fa66c8e7d52d3f0b8efac2c53c
      https://github.com/ehb54/ultrascan3/commit/ed2647558eb754fa66c8e7d52d3f0b8efac2c53c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp

  Log Message:
  -----------
  Update encryption tests to expect invalid results


  Commit: 27402a271781fa16ae00a693e5ce8e3f06e8e33e
      https://github.com/ehb54/ultrascan3/commit/27402a271781fa16ae00a693e5ce8e3f06e8e33e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.h

  Log Message:
  -----------
  Fix parameter description for decrypt functions


  Commit: 344a4930c5819ebfd2875eccc84d0a44a446ee31
      https://github.com/ehb54/ultrascan3/commit/344a4930c5819ebfd2875eccc84d0a44a446ee31
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix encryption finalization logic in us_crypto.cpp


  Commit: 817a32ad7fe5e5c35ec0479673a2f4c20a7a8e3c
      https://github.com/ehb54/ultrascan3/commit/817a32ad7fe5e5c35ec0479673a2f4c20a7a8e3c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix tag data retrieval in EVP_CIPHER_CTX_ctrl


  Commit: 096f3590c1a57a798a0c13863e80d333a690b4cf
      https://github.com/ehb54/ultrascan3/commit/096f3590c1a57a798a0c13863e80d333a690b4cf
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix type casting for GCM tag data


  Commit: ca6f560338cfe03c4fa0e60bb95577b526dbf2ed
      https://github.com/ehb54/ultrascan3/commit/ca6f560338cfe03c4fa0e60bb95577b526dbf2ed
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix type casting for GCM tag in us_crypto.cpp


  Commit: 300852b8d51c2733817729fab46d6d0e68f5e717
      https://github.com/ehb54/ultrascan3/commit/300852b8d51c2733817729fab46d6d0e68f5e717
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_crypto_buffer_overflow


  Commit: 0f7d005ceda3b8031c1180200237d736f60a1b4c
      https://github.com/ehb54/ultrascan3/commit/0f7d005ceda3b8031c1180200237d736f60a1b4c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h

  Log Message:
  -----------
  Merge pull request #379 from ehb54/lukas/us_crypto_buffer_overflow

us_crypto: Avoid buffer overflow, support longer passwords, introduce safer encryption


Compare: https://github.com/ehb54/ultrascan3/compare/90e9cf2eb989...0f7d005ceda3

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From noreply at github.com  Thu Mar  5 09:19:07 2026
From: noreply at github.com (Lukas Dobler)
Date: Thu, 05 Mar 2026 08:19:07 -0800
Subject: [us-commits] [ehb54/ultrascan3] 780dac: Refactor `US_AstfemMath`:
 improve low acceleration...
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/timestate/9c62b5-e0424b@github.com>

  Branch: refs/heads/lukas/timestate
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 780dac6301b72554362f7cc2944a17a6c64d2aa5
      https://github.com/ehb54/ultrascan3/commit/780dac6301b72554362f7cc2944a17a6c64d2aa5
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Refactor `US_AstfemMath`: improve low acceleration rate handling by adding corrections for slow experiments and original `timestate` checks.


  Commit: 01be09bde2a7cc42512e4a4f215108a9419c0d32
      https://github.com/ehb54/ultrascan3/commit/01be09bde2a7cc42512e4a4f215108a9419c0d32
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.h

  Log Message:
  -----------
  Add `prepareTimeState` method and integrate `US_TimeState` into `US_ConvertGui`


  Commit: e0424b860fb5077ab33b7e5db663b721da5ba290
      https://github.com/ehb54/ultrascan3/commit/e0424b860fb5077ab33b7e5db663b721da5ba290
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp

  Log Message:
  -----------
  Refactor `US_ConvertGui`: implement `prepareTimeState` for streamlined time state preparation and integrate into speed step processing logic.


Compare: https://github.com/ehb54/ultrascan3/compare/9c62b5336544...e0424b860fb5

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From noreply at github.com  Thu Mar  5 09:23:10 2026
From: noreply at github.com (Lukas Dobler)
Date: Thu, 05 Mar 2026 08:23:10 -0800
Subject: [us-commits] [ehb54/ultrascan3] 6dd71c: Refactor US_Crypto for
 AES-256-GCM encryption
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/timestate/e0424b-97b756@github.com>

  Branch: refs/heads/lukas/timestate
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 6dd71c26fbdb258b25259c7c5e41be982d54a809
      https://github.com/ehb54/ultrascan3/commit/6dd71c26fbdb258b25259c7c5e41be982d54a809
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Refactor US_Crypto for AES-256-GCM encryption


  Commit: 1461b65d9eae700e3429db2b7c19c35361fea861
      https://github.com/ehb54/ultrascan3/commit/1461b65d9eae700e3429db2b7c19c35361fea861
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.h

  Log Message:
  -----------
  Add decryptLegacy function and update decrypt signature


  Commit: ed2647558eb754fa66c8e7d52d3f0b8efac2c53c
      https://github.com/ehb54/ultrascan3/commit/ed2647558eb754fa66c8e7d52d3f0b8efac2c53c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp

  Log Message:
  -----------
  Update encryption tests to expect invalid results


  Commit: 27402a271781fa16ae00a693e5ce8e3f06e8e33e
      https://github.com/ehb54/ultrascan3/commit/27402a271781fa16ae00a693e5ce8e3f06e8e33e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.h

  Log Message:
  -----------
  Fix parameter description for decrypt functions


  Commit: 344a4930c5819ebfd2875eccc84d0a44a446ee31
      https://github.com/ehb54/ultrascan3/commit/344a4930c5819ebfd2875eccc84d0a44a446ee31
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix encryption finalization logic in us_crypto.cpp


  Commit: 817a32ad7fe5e5c35ec0479673a2f4c20a7a8e3c
      https://github.com/ehb54/ultrascan3/commit/817a32ad7fe5e5c35ec0479673a2f4c20a7a8e3c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix tag data retrieval in EVP_CIPHER_CTX_ctrl


  Commit: 096f3590c1a57a798a0c13863e80d333a690b4cf
      https://github.com/ehb54/ultrascan3/commit/096f3590c1a57a798a0c13863e80d333a690b4cf
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix type casting for GCM tag data


  Commit: ca6f560338cfe03c4fa0e60bb95577b526dbf2ed
      https://github.com/ehb54/ultrascan3/commit/ca6f560338cfe03c4fa0e60bb95577b526dbf2ed
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix type casting for GCM tag in us_crypto.cpp


  Commit: 300852b8d51c2733817729fab46d6d0e68f5e717
      https://github.com/ehb54/ultrascan3/commit/300852b8d51c2733817729fab46d6d0e68f5e717
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_crypto_buffer_overflow


  Commit: 0f7d005ceda3b8031c1180200237d736f60a1b4c
      https://github.com/ehb54/ultrascan3/commit/0f7d005ceda3b8031c1180200237d736f60a1b4c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h

  Log Message:
  -----------
  Merge pull request #379 from ehb54/lukas/us_crypto_buffer_overflow

us_crypto: Avoid buffer overflow, support longer passwords, introduce safer encryption


  Commit: 97b756dde416093dc9c7bb730c4958161c0e0232
      https://github.com/ehb54/ultrascan3/commit/97b756dde416093dc9c7bb730c4958161c0e0232
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/timestate


Compare: https://github.com/ehb54/ultrascan3/compare/e0424b860fb5...97b756dde416

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From noreply at github.com  Thu Mar  5 10:08:11 2026
From: noreply at github.com (emre brookes)
Date: Thu, 05 Mar 2026 09:08:11 -0800
Subject: [us-commits] [ehb54/ultrascan3] 6dd71c: Refactor US_Crypto for
 AES-256-GCM encryption
Message-ID: <ehb54/ultrascan3/push/refs/heads/ehb54-issue-670/572bb7-b2c2af@github.com>

  Branch: refs/heads/ehb54-issue-670
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 6dd71c26fbdb258b25259c7c5e41be982d54a809
      https://github.com/ehb54/ultrascan3/commit/6dd71c26fbdb258b25259c7c5e41be982d54a809
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Refactor US_Crypto for AES-256-GCM encryption


  Commit: 1461b65d9eae700e3429db2b7c19c35361fea861
      https://github.com/ehb54/ultrascan3/commit/1461b65d9eae700e3429db2b7c19c35361fea861
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.h

  Log Message:
  -----------
  Add decryptLegacy function and update decrypt signature


  Commit: ed2647558eb754fa66c8e7d52d3f0b8efac2c53c
      https://github.com/ehb54/ultrascan3/commit/ed2647558eb754fa66c8e7d52d3f0b8efac2c53c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp

  Log Message:
  -----------
  Update encryption tests to expect invalid results


  Commit: 27402a271781fa16ae00a693e5ce8e3f06e8e33e
      https://github.com/ehb54/ultrascan3/commit/27402a271781fa16ae00a693e5ce8e3f06e8e33e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.h

  Log Message:
  -----------
  Fix parameter description for decrypt functions


  Commit: 344a4930c5819ebfd2875eccc84d0a44a446ee31
      https://github.com/ehb54/ultrascan3/commit/344a4930c5819ebfd2875eccc84d0a44a446ee31
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix encryption finalization logic in us_crypto.cpp


  Commit: 817a32ad7fe5e5c35ec0479673a2f4c20a7a8e3c
      https://github.com/ehb54/ultrascan3/commit/817a32ad7fe5e5c35ec0479673a2f4c20a7a8e3c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix tag data retrieval in EVP_CIPHER_CTX_ctrl


  Commit: 096f3590c1a57a798a0c13863e80d333a690b4cf
      https://github.com/ehb54/ultrascan3/commit/096f3590c1a57a798a0c13863e80d333a690b4cf
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix type casting for GCM tag data


  Commit: ca6f560338cfe03c4fa0e60bb95577b526dbf2ed
      https://github.com/ehb54/ultrascan3/commit/ca6f560338cfe03c4fa0e60bb95577b526dbf2ed
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix type casting for GCM tag in us_crypto.cpp


  Commit: d1215ab67e2f9e4aa0bcf349eac8da7f58a9be6a
      https://github.com/ehb54/ultrascan3/commit/d1215ab67e2f9e4aa0bcf349eac8da7f58a9be6a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm

  Log Message:
  -----------
  mod: update 128x128 us-gmp icon and remove others


  Commit: ff02149480e771cbc205a241cee2322ae52a5ea3
      https://github.com/ehb54/ultrascan3/commit/ff02149480e771cbc205a241cee2322ae52a5ea3
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R propignore
    R proppng
    R proptext

  Log Message:
  -----------
  mod: delete svn files


  Commit: 0d744f1905b897d66da68befb43637e8ac4cd7bc
      https://github.com/ehb54/ultrascan3/commit/0d744f1905b897d66da68befb43637e8ac4cd7bc
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R README.linguist
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  mod: remove deprecated translation files and settings


  Commit: 722ffd5c4e0c7d1f2f2c27127e065270ae3c7598
      https://github.com/ehb54/ultrascan3/commit/722ffd5c4e0c7d1f2f2c27127e065270ae3c7598
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm

  Log Message:
  -----------
  Merge pull request #380 from ehb54/773-request-update-us-3-gmp-icons

Icon Maintenance


  Commit: 47dbf4a3837c551d64f6436f25aa7f5f7d482fad
      https://github.com/ehb54/ultrascan3/commit/47dbf4a3837c551d64f6436f25aa7f5f7d482fad
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:

  Log Message:
  -----------
  Merge branch 'main' into 775-bug-svn-files


  Commit: 93fb5f9f839b1aea6d85ed568acc18030ebed5c1
      https://github.com/ehb54/ultrascan3/commit/93fb5f9f839b1aea6d85ed568acc18030ebed5c1
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:

  Log Message:
  -----------
  Merge branch 'main' into 756-bug-translation-maintenance


  Commit: fe5370afd345acf40744a8c872c09eef88887bba
      https://github.com/ehb54/ultrascan3/commit/fe5370afd345acf40744a8c872c09eef88887bba
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R propignore
    R proppng
    R proptext

  Log Message:
  -----------
  Merge pull request #381 from ehb54/775-bug-svn-files

Remove Legacy SVN Files


  Commit: b1b7bdf318164406971f4188a7b3cf8b0aacbbaa
      https://github.com/ehb54/ultrascan3/commit/b1b7bdf318164406971f4188a7b3cf8b0aacbbaa
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:

  Log Message:
  -----------
  Merge branch 'main' into 756-bug-translation-maintenance


  Commit: 90e9cf2eb989a85420f4668067092a143d4457a9
      https://github.com/ehb54/ultrascan3/commit/90e9cf2eb989a85420f4668067092a143d4457a9
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R README.linguist
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  Merge pull request #382 from ehb54/756-bug-translation-maintenance

Translation File Maintenance


  Commit: 300852b8d51c2733817729fab46d6d0e68f5e717
      https://github.com/ehb54/ultrascan3/commit/300852b8d51c2733817729fab46d6d0e68f5e717
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_crypto_buffer_overflow


  Commit: 0f7d005ceda3b8031c1180200237d736f60a1b4c
      https://github.com/ehb54/ultrascan3/commit/0f7d005ceda3b8031c1180200237d736f60a1b4c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h

  Log Message:
  -----------
  Merge pull request #379 from ehb54/lukas/us_crypto_buffer_overflow

us_crypto: Avoid buffer overflow, support longer passwords, introduce safer encryption


  Commit: b2c2afd33a8ed941e547021628bcb32abea1675a
      https://github.com/ehb54/ultrascan3/commit/b2c2afd33a8ed941e547021628bcb32abea1675a
  Author: emre brookes <ehb54 at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M utils/libus_utils.pro
    M utils/us_crypto.cpp
    M utils/us_crypto.h

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


Compare: https://github.com/ehb54/ultrascan3/compare/572bb723ed59...b2c2afd33a8e

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From noreply at github.com  Thu Mar  5 11:35:44 2026
From: noreply at github.com (Lukas Dobler)
Date: Thu, 05 Mar 2026 10:35:44 -0800
Subject: [us-commits] [ehb54/ultrascan3] ea9b77: Refactor `US_ConvertGui`:
 streamline file handling...
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/timestate/97b756-11fa3a@github.com>

  Branch: refs/heads/lukas/timestate
  Home:   https://github.com/ehb54/ultrascan3
  Commit: ea9b77b204f53d6694d97541134564d0606916a3
      https://github.com/ehb54/ultrascan3/commit/ea9b77b204f53d6694d97541134564d0606916a3
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp

  Log Message:
  -----------
  Refactor `US_ConvertGui`: streamline file handling logic in time state preparation and enable GUI button state based on file existence.


  Commit: 11fa3a30cb824bce1c32920aa3a6b2c307f54f1a
      https://github.com/ehb54/ultrascan3/commit/11fa3a30cb824bce1c32920aa3a6b2c307f54f1a
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Refactor `US_AstfemMath`: replace `qDebug` with `DbgLv` for consistent debug logging.


Compare: https://github.com/ehb54/ultrascan3/compare/97b756dde416...11fa3a30cb82

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From noreply at github.com  Thu Mar  5 11:38:30 2026
From: noreply at github.com (Lukas Dobler)
Date: Thu, 05 Mar 2026 10:38:30 -0800
Subject: [us-commits] [ehb54/ultrascan3] 5eb4ad: Update
 `test_us_time_state`: adjust expected versi...
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/timestate/11fa3a-5eb4ad@github.com>

  Branch: refs/heads/lukas/timestate
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 5eb4adb03f6cf6e0ab2a6163a5d614d3b034d383
      https://github.com/ehb54/ultrascan3/commit/5eb4adb03f6cf6e0ab2a6163a5d614d3b034d383
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M test/utils/test_us_time_state.cpp

  Log Message:
  -----------
  Update `test_us_time_state`: adjust expected version to `2.2` in origin test.



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From noreply at github.com  Thu Mar  5 13:03:41 2026
From: noreply at github.com (Lukas Dobler)
Date: Thu, 05 Mar 2026 12:03:41 -0800
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/masterpassword_change/000000-0f7d00@github.com>

  Branch: refs/heads/lukas/masterpassword_change
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Thu Mar  5 13:04:36 2026
From: noreply at github.com (Lukas Dobler)
Date: Thu, 05 Mar 2026 12:04:36 -0800
Subject: [us-commits] [ehb54/ultrascan3] bc8f22: Refactor password
 re-encryption logic
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/masterpassword_change/0f7d00-bc8f22@github.com>

  Branch: refs/heads/lukas/masterpassword_change
  Home:   https://github.com/ehb54/ultrascan3
  Commit: bc8f22c93dcad653e16c52717a9386d9a99c67c9
      https://github.com/ehb54/ultrascan3/commit/bc8f22c93dcad653e16c52717a9386d9a99c67c9
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Refactor password re-encryption logic



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From noreply at github.com  Thu Mar  5 13:18:06 2026
From: noreply at github.com (Lukas Dobler)
Date: Thu, 05 Mar 2026 12:18:06 -0800
Subject: [us-commits] [ehb54/ultrascan3] 93b2e5: Check for empty cipherHex
 and optimize database loop
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/masterpassword_change/bc8f22-93b2e5@github.com>

  Branch: refs/heads/lukas/masterpassword_change
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 93b2e5a2535f0de5b6fe2b4384a60d509571f6d4
      https://github.com/ehb54/ultrascan3/commit/93b2e5a2535f0de5b6fe2b4384a60d509571f6d4
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Check for empty cipherHex and optimize database loop

Added a check for empty cipherHex before decryption and modified the database loop to use a reference.



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From noreply at github.com  Fri Mar  6 10:50:14 2026
From: noreply at github.com (aaron-auc)
Date: Fri, 06 Mar 2026 17:50:14 +0000 (UTC)
Subject: [us-commits] [ehb54/ultrascan3] b33c9b: mod: windows and macos qt
 assistant fix
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/6a9245-b33c9b@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: b33c9b1cddd853e103542e10c4328830fc59e944
      https://github.com/ehb54/ultrascan3/commit/b33c9b1cddd853e103542e10c4328830fc59e944
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    A admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
    M admin/cmake/packaging/windows/WinDeploy.cmake
    A admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
    M doc/manual/CMakeLists.txt
    R doc/manual/StageAssistant.cmake
    M programs/us/CMakeLists.txt
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  mod: windows and macos qt assistant fix



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From noreply at github.com  Fri Mar  6 10:55:42 2026
From: noreply at github.com (aaron-auc)
Date: Fri, 06 Mar 2026 09:55:42 -0800
Subject: [us-commits] [ehb54/ultrascan3] adb74a: fix: builddir set at the
 beginning
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/b33c9b-adb74a@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: adb74a9f1e5a1e238c264228544137f56a4125b5
      https://github.com/ehb54/ultrascan3/commit/adb74a9f1e5a1e238c264228544137f56a4125b5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  fix: builddir set at the beginning



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From noreply at github.com  Fri Mar  6 13:06:08 2026
From: noreply at github.com (aaron-auc)
Date: Fri, 06 Mar 2026 20:06:08 +0000 (UTC)
Subject: [us-commits] [ehb54/ultrascan3] cea2ea: fix: windows path issues
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/adb74a-cea2ea@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: cea2ea0e77baf6dbcc9097b3062ede36ca70f800
      https://github.com/ehb54/ultrascan3/commit/cea2ea0e77baf6dbcc9097b3062ede36ca70f800
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M doc/manual/CMakeLists.txt
    M scripts/build.ps1

  Log Message:
  -----------
  fix: windows path issues



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From noreply at github.com  Fri Mar  6 17:14:21 2026
From: noreply at github.com (aaron-auc)
Date: Sat, 07 Mar 2026 00:14:21 +0000 (UTC)
Subject: [us-commits] [ehb54/ultrascan3] 99a443: fix: windows missing dll
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/cea2ea-99a443@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 99a443309500f6d44fde4d4ba640770dfadeec24
      https://github.com/ehb54/ultrascan3/commit/99a443309500f6d44fde4d4ba640770dfadeec24
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
    M doc/manual/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_helpdaemon/us_helpdaemon.cpp

  Log Message:
  -----------
  fix: windows missing dll



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From noreply at github.com  Sat Mar  7 10:01:43 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 07 Mar 2026 17:01:43 +0000 (UTC)
Subject: [us-commits] [ehb54/ultrascan3] 32f3fd: Initialize `tsobj` with
 `TIMESTATE_TYPE::ORIGINAL`...
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/timestate/5eb4ad-32f3fd@github.com>

  Branch: refs/heads/lukas/timestate
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 32f3fd93bf886595a3d9b9b0335a74cf5645913a
      https://github.com/ehb54/ultrascan3/commit/32f3fd93bf886595a3d9b9b0335a74cf5645913a
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Initialize `tsobj` with `TIMESTATE_TYPE::ORIGINAL` in `US_TimeState`.



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From noreply at github.com  Sat Mar  7 10:02:45 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 07 Mar 2026 17:02:45 +0000 (UTC)
Subject: [us-commits] [ehb54/ultrascan3] f6095f: Initialize `tsobj` with
 `TIMESTATE_TYPE::ORIGINAL`...
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/timestate/32f3fd-f6095f@github.com>

  Branch: refs/heads/lukas/timestate
  Home:   https://github.com/ehb54/ultrascan3
  Commit: f6095ff611d0c2f9f6a04567e6f2a74535dd45fd
      https://github.com/ehb54/ultrascan3/commit/f6095ff611d0c2f9f6a04567e6f2a74535dd45fd
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Initialize `tsobj` with `TIMESTATE_TYPE::ORIGINAL` in `us_xpn_data`.



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From noreply at github.com  Sat Mar  7 10:04:42 2026
From: noreply at github.com (aaron-auc)
Date: Sat, 07 Mar 2026 09:04:42 -0800
Subject: [us-commits] [ehb54/ultrascan3] 399ad6: add: linux cmake packaging
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/99a443-399ad6@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 399ad6ee7636d4885c37adff02b723d1e6af48c9
      https://github.com/ehb54/ultrascan3/commit/399ad6ee7636d4885c37adff02b723d1e6af48c9
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    A admin/cmake/packaging/linux/LinuxDeploy.cmake
    A admin/cmake/packaging/linux/LinuxPkg.cmake
    M scripts/build.sh
    M utils/CMakeLists.txt

  Log Message:
  -----------
  add: linux cmake packaging



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From noreply at github.com  Sat Mar  7 10:39:31 2026
From: noreply at github.com (aaron-auc)
Date: Sat, 07 Mar 2026 09:39:31 -0800
Subject: [us-commits] [ehb54/ultrascan3] c32152: fix: cross platform page
 size
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/399ad6-c32152@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: c3215226c1e826bd7c620115a98fe3694cfe771e
      https://github.com/ehb54/ultrascan3/commit/c3215226c1e826bd7c620115a98fe3694cfe771e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.sh
    M utils/us_memory.cpp

  Log Message:
  -----------
  fix: cross platform page size



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From noreply at github.com  Sat Mar  7 11:30:13 2026
From: noreply at github.com (aaron-auc)
Date: Sat, 07 Mar 2026 18:30:13 +0000 (UTC)
Subject: [us-commits] [ehb54/ultrascan3] 16d1f7: fix: assistant on linux
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/c32152-16d1f7@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 16d1f75e51f11ad87c8f18b11e0a8a2bb755ea44
      https://github.com/ehb54/ultrascan3/commit/16d1f75e51f11ad87c8f18b11e0a8a2bb755ea44
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M admin/cmake/packaging/linux/LinuxDeploy.cmake
    M scripts/build.ps1
    M scripts/build.sh
    M vcpkg.json

  Log Message:
  -----------
  fix: assistant on linux



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From noreply at github.com  Sat Mar  7 11:36:44 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 07 Mar 2026 10:36:44 -0800
Subject: [us-commits] [ehb54/ultrascan3] f22ac1: Add support for
 `TIMESTATE_TYPE` and `IMPORT_TYPE`...
Message-ID: <ehb54/ultrascan3/push/refs/heads/main/0f7d00-4cff64@github.com>

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/ultrascan3
  Commit: f22ac1211864fd6e1e0f4bd0ab603df9a6703163
      https://github.com/ehb54/ultrascan3/commit/f22ac1211864fd6e1e0f4bd0ab603df9a6703163
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M utils/us_astfem_math.cpp
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Add support for `TIMESTATE_TYPE` and `IMPORT_TYPE` in `US_TimeState`: introduce enums, accessor methods, and XML serialization logic.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 92969167df27d9df138b7faee2cb16d988228790
      https://github.com/ehb54/ultrascan3/commit/92969167df27d9df138b7faee2cb16d988228790
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h

  Log Message:
  -----------
  Refactor `US_AstfemMath`: add parameter names to function signatures, update `check_acceleration` to include optional `timestate` argument, and adjust related logic.


  Commit: 9c62b533654400def76e5db0eb8c8f4924ff66d1
      https://github.com/ehb54/ultrascan3/commit/9c62b533654400def76e5db0eb8c8f4924ff66d1
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_spectrodata.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  Merge pull request #383 from ehb54/main

Update feature branch to main


  Commit: 780dac6301b72554362f7cc2944a17a6c64d2aa5
      https://github.com/ehb54/ultrascan3/commit/780dac6301b72554362f7cc2944a17a6c64d2aa5
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Refactor `US_AstfemMath`: improve low acceleration rate handling by adding corrections for slow experiments and original `timestate` checks.


  Commit: 01be09bde2a7cc42512e4a4f215108a9419c0d32
      https://github.com/ehb54/ultrascan3/commit/01be09bde2a7cc42512e4a4f215108a9419c0d32
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.h

  Log Message:
  -----------
  Add `prepareTimeState` method and integrate `US_TimeState` into `US_ConvertGui`


  Commit: e0424b860fb5077ab33b7e5db663b721da5ba290
      https://github.com/ehb54/ultrascan3/commit/e0424b860fb5077ab33b7e5db663b721da5ba290
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp

  Log Message:
  -----------
  Refactor `US_ConvertGui`: implement `prepareTimeState` for streamlined time state preparation and integrate into speed step processing logic.


  Commit: 97b756dde416093dc9c7bb730c4958161c0e0232
      https://github.com/ehb54/ultrascan3/commit/97b756dde416093dc9c7bb730c4958161c0e0232
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/timestate


  Commit: ea9b77b204f53d6694d97541134564d0606916a3
      https://github.com/ehb54/ultrascan3/commit/ea9b77b204f53d6694d97541134564d0606916a3
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp

  Log Message:
  -----------
  Refactor `US_ConvertGui`: streamline file handling logic in time state preparation and enable GUI button state based on file existence.


  Commit: 11fa3a30cb824bce1c32920aa3a6b2c307f54f1a
      https://github.com/ehb54/ultrascan3/commit/11fa3a30cb824bce1c32920aa3a6b2c307f54f1a
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Refactor `US_AstfemMath`: replace `qDebug` with `DbgLv` for consistent debug logging.


  Commit: 5eb4adb03f6cf6e0ab2a6163a5d614d3b034d383
      https://github.com/ehb54/ultrascan3/commit/5eb4adb03f6cf6e0ab2a6163a5d614d3b034d383
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M test/utils/test_us_time_state.cpp

  Log Message:
  -----------
  Update `test_us_time_state`: adjust expected version to `2.2` in origin test.


  Commit: 32f3fd93bf886595a3d9b9b0335a74cf5645913a
      https://github.com/ehb54/ultrascan3/commit/32f3fd93bf886595a3d9b9b0335a74cf5645913a
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Initialize `tsobj` with `TIMESTATE_TYPE::ORIGINAL` in `US_TimeState`.


  Commit: f6095ff611d0c2f9f6a04567e6f2a74535dd45fd
      https://github.com/ehb54/ultrascan3/commit/f6095ff611d0c2f9f6a04567e6f2a74535dd45fd
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Initialize `tsobj` with `TIMESTATE_TYPE::ORIGINAL` in `us_xpn_data`.


  Commit: 4cff648f9ba827db6e67e9cedb1a93953e8a0f76
      https://github.com/ehb54/ultrascan3/commit/4cff648f9ba827db6e67e9cedb1a93953e8a0f76
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge pull request #384 from ehb54/lukas/timestate

Add TIMESTATE_TYPE and IMPORT_TYPE support with refactorings


Compare: https://github.com/ehb54/ultrascan3/compare/0f7d005ceda3...4cff648f9ba8

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From noreply at github.com  Sat Mar  7 11:36:54 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 07 Mar 2026 10:36:54 -0800
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/timestate/f6095f-000000@github.com>

  Branch: refs/heads/lukas/timestate
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Sat Mar  7 11:41:28 2026
From: noreply at github.com (aaron-auc)
Date: Sat, 07 Mar 2026 10:41:28 -0800
Subject: [us-commits] [ehb54/ultrascan3] 5ab554: fix: vcpkg cache clear
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/16d1f7-5ab554@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 5ab554ce68ae411774740695115c51b480df8c8a
      https://github.com/ehb54/ultrascan3/commit/5ab554ce68ae411774740695115c51b480df8c8a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  fix: vcpkg cache clear



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From noreply at github.com  Sat Mar  7 11:44:54 2026
From: noreply at github.com (aaron-auc)
Date: Sat, 07 Mar 2026 10:44:54 -0800
Subject: [us-commits] [ehb54/ultrascan3] a8b6e9: fix: vcpkg cache clear fix
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/5ab554-a8b6e9@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: a8b6e9963d8ed447dc737af6b4e3b69c3894945f
      https://github.com/ehb54/ultrascan3/commit/a8b6e9963d8ed447dc737af6b4e3b69c3894945f
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  fix: vcpkg cache clear fix



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From noreply at github.com  Sat Mar  7 15:54:43 2026
From: noreply at github.com (aaron-auc)
Date: Sat, 07 Mar 2026 22:54:43 +0000 (UTC)
Subject: [us-commits] [ehb54/ultrascan3] 19f656: fix: assistant now copied
 to bin on dev build
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/a8b6e9-19f656@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 19f656eb532b2218880402623455153763d66d50
      https://github.com/ehb54/ultrascan3/commit/19f656eb532b2218880402623455153763d66d50
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt

  Log Message:
  -----------
  fix: assistant now copied to bin on dev build



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From noreply at github.com  Sat Mar  7 16:11:46 2026
From: noreply at github.com (aaron-auc)
Date: Sat, 07 Mar 2026 15:11:46 -0800
Subject: [us-commits] [ehb54/ultrascan3] 75e0dc: fix: assistant find update
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/19f656-75e0dc@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 75e0dc23de6fbdd330b322115c640d973e916d02
      https://github.com/ehb54/ultrascan3/commit/75e0dc23de6fbdd330b322115c640d973e916d02
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt

  Log Message:
  -----------
  fix: assistant find update



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From noreply at github.com  Sat Mar  7 16:43:23 2026
From: noreply at github.com (aaron-auc)
Date: Sat, 07 Mar 2026 15:43:23 -0800
Subject: [us-commits] [ehb54/ultrascan3] 57f162: fix: program path issue
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/75e0dc-57f162@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 57f162e692e1a548bb426454e7e768e6f68b1bc4
      https://github.com/ehb54/ultrascan3/commit/57f162e692e1a548bb426454e7e768e6f68b1bc4
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M programs/us/us.cpp

  Log Message:
  -----------
  fix: program path issue



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From noreply at github.com  Sat Mar  7 16:52:37 2026
From: noreply at github.com (aaron-auc)
Date: Sat, 07 Mar 2026 15:52:37 -0800
Subject: [us-commits] [ehb54/ultrascan3] 470097: fix: assistant not found
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/57f162-470097@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 4700970e14e8ef1bf44b3fe91efd8dbcd15ba544
      https://github.com/ehb54/ultrascan3/commit/4700970e14e8ef1bf44b3fe91efd8dbcd15ba544
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt

  Log Message:
  -----------
  fix: assistant not found



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From noreply at github.com  Sat Mar  7 17:00:16 2026
From: noreply at github.com (aaron-auc)
Date: Sat, 07 Mar 2026 16:00:16 -0800
Subject: [us-commits] [ehb54/ultrascan3] 14d6c7: fix: guard specific macos
 required tools
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/470097-14d6c7@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 14d6c7e63b928fb3a73559fdafa9426502eda98c
      https://github.com/ehb54/ultrascan3/commit/14d6c7e63b928fb3a73559fdafa9426502eda98c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  fix: guard specific macos required tools



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From noreply at github.com  Sat Mar  7 17:09:33 2026
From: noreply at github.com (aaron-auc)
Date: Sat, 07 Mar 2026 16:09:33 -0800
Subject: [us-commits] [ehb54/ultrascan3] 1c6be4: fix: missing library in pkg
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/14d6c7-1c6be4@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 1c6be4ed0464373db7a5a1a6a780f17bc12dbcf5
      https://github.com/ehb54/ultrascan3/commit/1c6be4ed0464373db7a5a1a6a780f17bc12dbcf5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/linux/LinuxDeploy.cmake

  Log Message:
  -----------
  fix: missing library in pkg



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From noreply at github.com  Sat Mar  7 17:11:51 2026
From: noreply at github.com (aaron-auc)
Date: Sun, 08 Mar 2026 00:11:51 +0000 (UTC)
Subject: [us-commits] [ehb54/ultrascan3] 216860: fix: rcc error
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/1c6be4-216860@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 216860fe02c9358e021e6a54b84aa2aa0e462a99
      https://github.com/ehb54/ultrascan3/commit/216860fe02c9358e021e6a54b84aa2aa0e462a99
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  fix: rcc error



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From noreply at github.com  Sat Mar  7 17:28:38 2026
From: noreply at github.com (aaron-auc)
Date: Sat, 07 Mar 2026 16:28:38 -0800
Subject: [us-commits] [ehb54/ultrascan3] be038a: fix: update plugin directory
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/216860-be038a@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: be038ad56e172897c3f18b8a1319fced62a708a0
      https://github.com/ehb54/ultrascan3/commit/be038ad56e172897c3f18b8a1319fced62a708a0
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M admin/cmake/packaging/linux/LinuxDeploy.cmake

  Log Message:
  -----------
  fix: update plugin directory



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From noreply at github.com  Sat Mar  7 17:58:37 2026
From: noreply at github.com (aaron-auc)
Date: Sat, 07 Mar 2026 16:58:37 -0800
Subject: [us-commits] [ehb54/ultrascan3] 87c38b: add: readme
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/be038a-87c38b@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 87c38bbe59db529cf02b7887c7bfe57ebc8e62da
      https://github.com/ehb54/ultrascan3/commit/87c38bbe59db529cf02b7887c7bfe57ebc8e62da
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/linux/LinuxDeploy.cmake

  Log Message:
  -----------
  add: readme



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From noreply at github.com  Sun Mar  8 00:13:07 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 07 Mar 2026 23:13:07 -0800
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_pseudo_absorbance_timestate/000000-4cff64@github.com>

  Branch: refs/heads/lukas/us_pseudo_absorbance_timestate
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Sun Mar  8 01:21:46 2026
From: noreply at github.com (Lukas Dobler)
Date: Sun, 08 Mar 2026 08:21:46 +0000 (UTC)
Subject: [us-commits] [ehb54/ultrascan3] 756486: Add `load_timestate`
 methods to `US_ConvertScan` f...
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_pseudo_absorbance_timestate/4cff64-756486@github.com>

  Branch: refs/heads/lukas/us_pseudo_absorbance_timestate
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 75648618e7f79fde451a6e9f2cf9023d8ed19140
      https://github.com/ehb54/ultrascan3/commit/75648618e7f79fde451a6e9f2cf9023d8ed19140
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h

  Log Message:
  -----------
  Add `load_timestate` methods to `US_ConvertScan` for handling time state from disk or database.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>



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From noreply at github.com  Sun Mar  8 07:15:10 2026
From: noreply at github.com (Lukas Dobler)
Date: Sun, 08 Mar 2026 06:15:10 -0700
Subject: [us-commits] [ehb54/ultrascan3] 756486: Add `load_timestate`
 methods to `US_ConvertScan` f...
Message-ID: <ehb54/ultrascan3/push/refs/heads/main/4cff64-fb3e87@github.com>

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 75648618e7f79fde451a6e9f2cf9023d8ed19140
      https://github.com/ehb54/ultrascan3/commit/75648618e7f79fde451a6e9f2cf9023d8ed19140
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h

  Log Message:
  -----------
  Add `load_timestate` methods to `US_ConvertScan` for handling time state from disk or database.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: fb3e874b186e61a3c3b696be002fa6134d681c4e
      https://github.com/ehb54/ultrascan3/commit/fb3e874b186e61a3c3b696be002fa6134d681c4e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h

  Log Message:
  -----------
  Merge pull request #386 from ehb54/lukas/us_pseudo_absorbance_timestate

us_pseudo_absorbance: transfer timestate


Compare: https://github.com/ehb54/ultrascan3/compare/4cff648f9ba8...fb3e874b186e

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From noreply at github.com  Sun Mar  8 12:20:09 2026
From: noreply at github.com (aaron-auc)
Date: Sun, 08 Mar 2026 11:20:09 -0700
Subject: [us-commits] [ehb54/ultrascan3] f4323b: fix: hpc build
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/87c38b-f4323b@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: f4323bc883bb8996c6e627bfb9b8295063ef176f
      https://github.com/ehb54/ultrascan3/commit/f4323bc883bb8996c6e627bfb9b8295063ef176f
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    M admin/cmake/GenerateVersion.cmake
    A admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcPkg.cmake
    A admin/cmake/packaging/macos/MacHpcDeploy.cmake
    A admin/cmake/packaging/macos/MacHpcPkg.cmake
    M programs/CMakeLists.txt
    M programs/us_mpi_analysis/2dsa_worker.cpp
    M programs/us_mpi_analysis/CMakeLists.txt
    M programs/us_mpi_analysis/pcsa_worker.cpp
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M scripts/build.sh

  Log Message:
  -----------
  fix: hpc build



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From noreply at github.com  Sun Mar  8 14:31:06 2026
From: noreply at github.com (Lukas Dobler)
Date: Sun, 08 Mar 2026 13:31:06 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_pseudo_absorbance_timestate/756486-000000@github.com>

  Branch: refs/heads/lukas/us_pseudo_absorbance_timestate
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Sun Mar  8 14:31:39 2026
From: noreply at github.com (Lukas Dobler)
Date: Sun, 08 Mar 2026 13:31:39 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_edit_scan_exclude_click/000000-fb3e87@github.com>

  Branch: refs/heads/lukas/us_edit_scan_exclude_click
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Sun Mar  8 18:24:19 2026
From: noreply at github.com (aaron-auc)
Date: Sun, 08 Mar 2026 17:24:19 -0700
Subject: [us-commits] [ehb54/ultrascan3] c51590: mod: use all cores with CI
 runners
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/f4323b-c51590@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: c515903ce23bec6067e47ed10ae663518f3de230
      https://github.com/ehb54/ultrascan3/commit/c515903ce23bec6067e47ed10ae663518f3de230
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  mod: use all cores with CI runners



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From noreply at github.com  Sun Mar  8 18:44:27 2026
From: noreply at github.com (aaron-auc)
Date: Sun, 08 Mar 2026 17:44:27 -0700
Subject: [us-commits] [ehb54/ultrascan3] 7a8a01: fix: CI runners and hpc
 build
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/c51590-7a8a01@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 7a8a012754d242634bca20501e1a1c94be231d6c
      https://github.com/ehb54/ultrascan3/commit/7a8a012754d242634bca20501e1a1c94be231d6c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M CMakePresets.json
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  fix: CI runners and hpc build



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From noreply at github.com  Sun Mar  8 19:12:19 2026
From: noreply at github.com (aaron-auc)
Date: Sun, 08 Mar 2026 18:12:19 -0700
Subject: [us-commits] [ehb54/ultrascan3] 527735: fix: not all dependencies
 found
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/7a8a01-527735@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 5277352caa620430b2bf8a580f9f10d43218d930
      https://github.com/ehb54/ultrascan3/commit/5277352caa620430b2bf8a580f9f10d43218d930
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  fix: not all dependencies found



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From noreply at github.com  Sun Mar  8 19:32:12 2026
From: noreply at github.com (aaron-auc)
Date: Sun, 08 Mar 2026 18:32:12 -0700
Subject: [us-commits] [ehb54/ultrascan3] 60b1b1: fix: dependenies added
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/527735-60b1b1@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 60b1b16425fcda080aea3bfac20f1abad9e8bc32
      https://github.com/ehb54/ultrascan3/commit/60b1b16425fcda080aea3bfac20f1abad9e8bc32
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  fix: dependenies added



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From noreply at github.com  Mon Mar  9 07:33:06 2026
From: noreply at github.com (aaron-auc)
Date: Mon, 09 Mar 2026 06:33:06 -0700
Subject: [us-commits] [ehb54/ultrascan3] 3b29d9: fix: bootstrap deps
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/60b1b1-3b29d9@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 3b29d9afdd3d29c7e33af7f0b989ccf1c642bc8c
      https://github.com/ehb54/ultrascan3/commit/3b29d9afdd3d29c7e33af7f0b989ccf1c642bc8c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    A scripts/bootstrap-deps.sh
    A scripts/bootstrap-macos.sh
    A scripts/bootstrap-windows.ps1
    A scripts/bootstrap.bat
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  fix: bootstrap deps



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From noreply at github.com  Mon Mar  9 11:40:38 2026
From: noreply at github.com (aaron-auc)
Date: Mon, 09 Mar 2026 10:40:38 -0700
Subject: [us-commits] [ehb54/ultrascan3] 497570: fix: qt5 tools overlay
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/3b29d9-497570@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 4975707ad3f001539ceeea7d716043118c23d07a
      https://github.com/ehb54/ultrascan3/commit/4975707ad3f001539ceeea7d716043118c23d07a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    A buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    M scripts/bootstrap-deps.sh

  Log Message:
  -----------
  fix: qt5 tools overlay



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From noreply at github.com  Mon Mar  9 15:34:58 2026
From: noreply at github.com (aaron-auc)
Date: Mon, 09 Mar 2026 14:34:58 -0700
Subject: [us-commits] [ehb54/ultrascan3] e7e061: add: bash wrapper
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/497570-e7e061@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: e7e0613e5d7d234f835e4e9490416e0a7f5b9803
      https://github.com/ehb54/ultrascan3/commit/e7e0613e5d7d234f835e4e9490416e0a7f5b9803
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/bootstrap-deps.sh
    M scripts/bootstrap-macos.sh
    M scripts/build.sh
    A us-build

  Log Message:
  -----------
  add: bash wrapper



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From noreply at github.com  Mon Mar  9 15:50:59 2026
From: noreply at github.com (aaron-auc)
Date: Mon, 09 Mar 2026 14:50:59 -0700
Subject: [us-commits] [ehb54/ultrascan3] b93b52: mod: make profile
 positional for powershell
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/e7e061-b93b52@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: b93b52b3acb64a650854a16f3983473f49becee9
      https://github.com/ehb54/ultrascan3/commit/b93b52b3acb64a650854a16f3983473f49becee9
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  mod: make profile positional for powershell



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From noreply at github.com  Mon Mar  9 19:24:56 2026
From: noreply at github.com (aaron-auc)
Date: Mon, 09 Mar 2026 18:24:56 -0700
Subject: [us-commits] [ehb54/ultrascan3] dfec7b: fix: convert -- pkg to -
 pkg for windows
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/b93b52-dfec7b@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: dfec7b06f5af8e9ad31d7b4c682197a103bd5fb1
      https://github.com/ehb54/ultrascan3/commit/dfec7b06f5af8e9ad31d7b4c682197a103bd5fb1
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/bootstrap-windows.ps1
    M scripts/build.bat

  Log Message:
  -----------
  fix: convert -- pkg to - pkg for windows



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From noreply at github.com  Mon Mar  9 19:39:14 2026
From: noreply at github.com (aaron-auc)
Date: Mon, 09 Mar 2026 18:39:14 -0700
Subject: [us-commits] [ehb54/ultrascan3] 2f98f9: fix: getwin
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/dfec7b-2f98f9@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 2f98f90faa5b640815d571359919c09034a266c1
      https://github.com/ehb54/ultrascan3/commit/2f98f90faa5b640815d571359919c09034a266c1
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/bootstrap-windows.ps1

  Log Message:
  -----------
  fix: getwin



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From noreply at github.com  Mon Mar  9 19:57:10 2026
From: noreply at github.com (aaron-auc)
Date: Mon, 09 Mar 2026 18:57:10 -0700
Subject: [us-commits] [ehb54/ultrascan3] 7249d6: fix: add chocolatey
 fallback for ci
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/2f98f9-7249d6@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 7249d6b2d508075f65d61b2643639c789db68d8e
      https://github.com/ehb54/ultrascan3/commit/7249d6b2d508075f65d61b2643639c789db68d8e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/bootstrap-windows.ps1

  Log Message:
  -----------
  fix: add chocolatey fallback for ci



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From noreply at github.com  Tue Mar 10 13:51:36 2026
From: noreply at github.com (emre brookes)
Date: Tue, 10 Mar 2026 12:51:36 -0700
Subject: [us-commits] [ehb54/ultrascan3] f22ac1: Add support for
 `TIMESTATE_TYPE` and `IMPORT_TYPE`...
Message-ID: <ehb54/ultrascan3/push/refs/heads/ehb54-issue-670/b2c2af-fd116b@github.com>

  Branch: refs/heads/ehb54-issue-670
  Home:   https://github.com/ehb54/ultrascan3
  Commit: f22ac1211864fd6e1e0f4bd0ab603df9a6703163
      https://github.com/ehb54/ultrascan3/commit/f22ac1211864fd6e1e0f4bd0ab603df9a6703163
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M utils/us_astfem_math.cpp
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Add support for `TIMESTATE_TYPE` and `IMPORT_TYPE` in `US_TimeState`: introduce enums, accessor methods, and XML serialization logic.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 92969167df27d9df138b7faee2cb16d988228790
      https://github.com/ehb54/ultrascan3/commit/92969167df27d9df138b7faee2cb16d988228790
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h

  Log Message:
  -----------
  Refactor `US_AstfemMath`: add parameter names to function signatures, update `check_acceleration` to include optional `timestate` argument, and adjust related logic.


  Commit: 9c62b533654400def76e5db0eb8c8f4924ff66d1
      https://github.com/ehb54/ultrascan3/commit/9c62b533654400def76e5db0eb8c8f4924ff66d1
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_spectrodata.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  Merge pull request #383 from ehb54/main

Update feature branch to main


  Commit: 780dac6301b72554362f7cc2944a17a6c64d2aa5
      https://github.com/ehb54/ultrascan3/commit/780dac6301b72554362f7cc2944a17a6c64d2aa5
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Refactor `US_AstfemMath`: improve low acceleration rate handling by adding corrections for slow experiments and original `timestate` checks.


  Commit: 01be09bde2a7cc42512e4a4f215108a9419c0d32
      https://github.com/ehb54/ultrascan3/commit/01be09bde2a7cc42512e4a4f215108a9419c0d32
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.h

  Log Message:
  -----------
  Add `prepareTimeState` method and integrate `US_TimeState` into `US_ConvertGui`


  Commit: e0424b860fb5077ab33b7e5db663b721da5ba290
      https://github.com/ehb54/ultrascan3/commit/e0424b860fb5077ab33b7e5db663b721da5ba290
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp

  Log Message:
  -----------
  Refactor `US_ConvertGui`: implement `prepareTimeState` for streamlined time state preparation and integrate into speed step processing logic.


  Commit: 97b756dde416093dc9c7bb730c4958161c0e0232
      https://github.com/ehb54/ultrascan3/commit/97b756dde416093dc9c7bb730c4958161c0e0232
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/timestate


  Commit: ea9b77b204f53d6694d97541134564d0606916a3
      https://github.com/ehb54/ultrascan3/commit/ea9b77b204f53d6694d97541134564d0606916a3
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp

  Log Message:
  -----------
  Refactor `US_ConvertGui`: streamline file handling logic in time state preparation and enable GUI button state based on file existence.


  Commit: 11fa3a30cb824bce1c32920aa3a6b2c307f54f1a
      https://github.com/ehb54/ultrascan3/commit/11fa3a30cb824bce1c32920aa3a6b2c307f54f1a
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Refactor `US_AstfemMath`: replace `qDebug` with `DbgLv` for consistent debug logging.


  Commit: 5eb4adb03f6cf6e0ab2a6163a5d614d3b034d383
      https://github.com/ehb54/ultrascan3/commit/5eb4adb03f6cf6e0ab2a6163a5d614d3b034d383
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M test/utils/test_us_time_state.cpp

  Log Message:
  -----------
  Update `test_us_time_state`: adjust expected version to `2.2` in origin test.


  Commit: 32f3fd93bf886595a3d9b9b0335a74cf5645913a
      https://github.com/ehb54/ultrascan3/commit/32f3fd93bf886595a3d9b9b0335a74cf5645913a
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Initialize `tsobj` with `TIMESTATE_TYPE::ORIGINAL` in `US_TimeState`.


  Commit: f6095ff611d0c2f9f6a04567e6f2a74535dd45fd
      https://github.com/ehb54/ultrascan3/commit/f6095ff611d0c2f9f6a04567e6f2a74535dd45fd
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Initialize `tsobj` with `TIMESTATE_TYPE::ORIGINAL` in `us_xpn_data`.


  Commit: 4cff648f9ba827db6e67e9cedb1a93953e8a0f76
      https://github.com/ehb54/ultrascan3/commit/4cff648f9ba827db6e67e9cedb1a93953e8a0f76
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge pull request #384 from ehb54/lukas/timestate

Add TIMESTATE_TYPE and IMPORT_TYPE support with refactorings


  Commit: 75648618e7f79fde451a6e9f2cf9023d8ed19140
      https://github.com/ehb54/ultrascan3/commit/75648618e7f79fde451a6e9f2cf9023d8ed19140
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h

  Log Message:
  -----------
  Add `load_timestate` methods to `US_ConvertScan` for handling time state from disk or database.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: fb3e874b186e61a3c3b696be002fa6134d681c4e
      https://github.com/ehb54/ultrascan3/commit/fb3e874b186e61a3c3b696be002fa6134d681c4e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h

  Log Message:
  -----------
  Merge pull request #386 from ehb54/lukas/us_pseudo_absorbance_timestate

us_pseudo_absorbance: transfer timestate


  Commit: fd116b43987cda26a351438dcd70082a7c27ce17
      https://github.com/ehb54/ultrascan3/commit/fd116b43987cda26a351438dcd70082a7c27ce17
  Author: emre brookes <ehb54 at users.noreply.github.com>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


Compare: https://github.com/ehb54/ultrascan3/compare/b2c2afd33a8e...fd116b43987c

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From noreply at github.com  Wed Mar 11 08:10:38 2026
From: noreply at github.com (Lukas Dobler)
Date: Wed, 11 Mar 2026 07:10:38 -0700
Subject: [us-commits] [ehb54/ultrascan3] 1dbeb0: Refactor `US_Plot`: enhance
 double-click interacti...
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_edit_scan_exclude_click/fb3e87-72c834@github.com>

  Branch: refs/heads/lukas/us_edit_scan_exclude_click
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 1dbeb030075307c5652d506be95a2186a0c22724
      https://github.com/ehb54/ultrascan3/commit/1dbeb030075307c5652d506be95a2186a0c22724
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h

  Log Message:
  -----------
  Refactor `US_Plot`: enhance double-click interactions, add zoom configuration, and improve curve/axis management with event filter.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 72c834e6d8fa6d6cd9d3b1d1eb90cc7410670c01
      https://github.com/ehb54/ultrascan3/commit/72c834e6d8fa6d6cd9d3b1d1eb90cc7410670c01
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  Add "Click Exclusion Mode" in `US_Edit` with hover tooltips and enhanced scan selection functionality.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


Compare: https://github.com/ehb54/ultrascan3/compare/fb3e874b186e...72c834e6d8fa

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From noreply at github.com  Wed Mar 11 08:55:23 2026
From: noreply at github.com (Lukas Dobler)
Date: Wed, 11 Mar 2026 07:55:23 -0700
Subject: [us-commits] [ehb54/ultrascan3] ced5c0: Add null pointer check for
 `plot->getZoomer()` in ...
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_edit_scan_exclude_click/72c834-d73cc2@github.com>

  Branch: refs/heads/lukas/us_edit_scan_exclude_click
  Home:   https://github.com/ehb54/ultrascan3
  Commit: ced5c0cf9086f5a21a308bcb214f061a75e89aab
      https://github.com/ehb54/ultrascan3/commit/ced5c0cf9086f5a21a308bcb214f061a75e89aab
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  Add null pointer check for `plot->getZoomer()` in `US_Edit` to prevent potential crashes.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: b5607cb3d6296c0e48283cc6dd1a804c051dd8d9
      https://github.com/ehb54/ultrascan3/commit/b5607cb3d6296c0e48283cc6dd1a804c051dd8d9
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  Remove redundant state machine changes in "Click Exclusion Mode" toggle of `US_Edit`.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: d548b54d3bbac75ffbf270b99643e5cf26257968
      https://github.com/ehb54/ultrascan3/commit/d548b54d3bbac75ffbf270b99643e5cf26257968
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.h

  Log Message:
  -----------
  Initialize members in `CurveDistance` struct with default values to improve stability and prevent undefined behavior.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: f3e23f8189d66b9641b37fb2c54b38119d2ef2ec
      https://github.com/ehb54/ultrascan3/commit/f3e23f8189d66b9641b37fb2c54b38119d2ef2ec
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp

  Log Message:
  -----------
  Refactor `US_Plot`: add new double-click connections, refactor axis configuration, and enhance zoomer signal handling.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: d73cc2971816653d17d72f1785291c00b96b0c8b
      https://github.com/ehb54/ultrascan3/commit/d73cc2971816653d17d72f1785291c00b96b0c8b
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp

  Log Message:
  -----------
  Update `US_Plot::createZoomer` to adjust `US_Zoomer` constructor arguments for axis configuration.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


Compare: https://github.com/ehb54/ultrascan3/compare/72c834e6d8fa...d73cc2971816

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From noreply at github.com  Wed Mar 11 13:34:33 2026
From: noreply at github.com (alexsav815)
Date: Wed, 11 Mar 2026 12:34:33 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue784/000000-fb3e87@github.com>

  Branch: refs/heads/alexey-dev-issue784
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Wed Mar 11 15:02:01 2026
From: noreply at github.com (alexsav815)
Date: Wed, 11 Mar 2026 14:02:01 -0700
Subject: [us-commits] [ehb54/ultrascan3] 595e43: US_model_lader -- debug...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue784/fb3e87-595e43@github.com>

  Branch: refs/heads/alexey-dev-issue784
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 595e43e7a8c559561a2efb98756fde2b06b621dd
      https://github.com/ehb54/ultrascan3/commit/595e43e7a8c559561a2efb98756fde2b06b621dd
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_model_loader.cpp

  Log Message:
  -----------
  US_model_lader  -- debug...



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From noreply at github.com  Wed Mar 11 16:21:47 2026
From: noreply at github.com (alexsav815)
Date: Wed, 11 Mar 2026 15:21:47 -0700
Subject: [us-commits] [ehb54/ultrascan3] a5cb47: [1]US_model_lader --
 debug...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue784/595e43-a5cb47@github.com>

  Branch: refs/heads/alexey-dev-issue784
  Home:   https://github.com/ehb54/ultrascan3
  Commit: a5cb47ccf8fbe154882d75dc4733375a79bad065
      https://github.com/ehb54/ultrascan3/commit/a5cb47ccf8fbe154882d75dc4733375a79bad065
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp

  Log Message:
  -----------
  [1]US_model_lader  -- debug...



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From noreply at github.com  Wed Mar 11 16:31:45 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 11 Mar 2026 15:31:45 -0700
Subject: [us-commits] [ehb54/ultrascan3] 45140e: fix: windows CI vcpkg cache
 usage
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/7249d6-45140e@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 45140eeddd64e45d6b5c87061f79c9aefc3ce25e
      https://github.com/ehb54/ultrascan3/commit/45140eeddd64e45d6b5c87061f79c9aefc3ce25e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    M programs/us/revision.sh
    M scripts/build.ps1

  Log Message:
  -----------
  fix: windows CI vcpkg cache usage



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From noreply at github.com  Wed Mar 11 17:19:14 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 11 Mar 2026 16:19:14 -0700
Subject: [us-commits] [ehb54/ultrascan3] 1ec6ec: add: macos intel build
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/45140e-1ec6ec@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 1ec6ec52d283b6c710abe095ebcad82139a64ae3
      https://github.com/ehb54/ultrascan3/commit/1ec6ec52d283b6c710abe095ebcad82139a64ae3
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M CMakePresets.json
    M scripts/build.sh

  Log Message:
  -----------
  add: macos intel build



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From noreply at github.com  Wed Mar 11 17:43:43 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 11 Mar 2026 16:43:43 -0700
Subject: [us-commits] [ehb54/ultrascan3] 39ad33: fix: vcpkg CI handling
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/1ec6ec-39ad33@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 39ad33c5c781b0f007822456803df7d591795fe7
      https://github.com/ehb54/ultrascan3/commit/39ad33c5c781b0f007822456803df7d591795fe7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  fix: vcpkg CI handling



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From noreply at github.com  Wed Mar 11 18:39:56 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 11 Mar 2026 17:39:56 -0700
Subject: [us-commits] [ehb54/ultrascan3] 7fad3a: fix: change revision to
 git_revision to be consist...
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/39ad33-7fad3a@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 7fad3a4dfaa187ad4eb94554cedbe3ec6cf56773
      https://github.com/ehb54/ultrascan3/commit/7fad3a4dfaa187ad4eb94554cedbe3ec6cf56773
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_mpi_analysis/revision.sh

  Log Message:
  -----------
  fix: change revision to git_revision to be consistent with other programs



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From noreply at github.com  Wed Mar 11 18:45:09 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 11 Mar 2026 17:45:09 -0700
Subject: [us-commits] [ehb54/ultrascan3] f22ac1: Add support for
 `TIMESTATE_TYPE` and `IMPORT_TYPE`...
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/7fad3a-b4417a@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: f22ac1211864fd6e1e0f4bd0ab603df9a6703163
      https://github.com/ehb54/ultrascan3/commit/f22ac1211864fd6e1e0f4bd0ab603df9a6703163
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M utils/us_astfem_math.cpp
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Add support for `TIMESTATE_TYPE` and `IMPORT_TYPE` in `US_TimeState`: introduce enums, accessor methods, and XML serialization logic.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 92969167df27d9df138b7faee2cb16d988228790
      https://github.com/ehb54/ultrascan3/commit/92969167df27d9df138b7faee2cb16d988228790
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h

  Log Message:
  -----------
  Refactor `US_AstfemMath`: add parameter names to function signatures, update `check_acceleration` to include optional `timestate` argument, and adjust related logic.


  Commit: 6dd71c26fbdb258b25259c7c5e41be982d54a809
      https://github.com/ehb54/ultrascan3/commit/6dd71c26fbdb258b25259c7c5e41be982d54a809
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Refactor US_Crypto for AES-256-GCM encryption


  Commit: 1461b65d9eae700e3429db2b7c19c35361fea861
      https://github.com/ehb54/ultrascan3/commit/1461b65d9eae700e3429db2b7c19c35361fea861
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.h

  Log Message:
  -----------
  Add decryptLegacy function and update decrypt signature


  Commit: ed2647558eb754fa66c8e7d52d3f0b8efac2c53c
      https://github.com/ehb54/ultrascan3/commit/ed2647558eb754fa66c8e7d52d3f0b8efac2c53c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp

  Log Message:
  -----------
  Update encryption tests to expect invalid results


  Commit: 27402a271781fa16ae00a693e5ce8e3f06e8e33e
      https://github.com/ehb54/ultrascan3/commit/27402a271781fa16ae00a693e5ce8e3f06e8e33e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.h

  Log Message:
  -----------
  Fix parameter description for decrypt functions


  Commit: 344a4930c5819ebfd2875eccc84d0a44a446ee31
      https://github.com/ehb54/ultrascan3/commit/344a4930c5819ebfd2875eccc84d0a44a446ee31
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix encryption finalization logic in us_crypto.cpp


  Commit: 817a32ad7fe5e5c35ec0479673a2f4c20a7a8e3c
      https://github.com/ehb54/ultrascan3/commit/817a32ad7fe5e5c35ec0479673a2f4c20a7a8e3c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix tag data retrieval in EVP_CIPHER_CTX_ctrl


  Commit: 096f3590c1a57a798a0c13863e80d333a690b4cf
      https://github.com/ehb54/ultrascan3/commit/096f3590c1a57a798a0c13863e80d333a690b4cf
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix type casting for GCM tag data


  Commit: ca6f560338cfe03c4fa0e60bb95577b526dbf2ed
      https://github.com/ehb54/ultrascan3/commit/ca6f560338cfe03c4fa0e60bb95577b526dbf2ed
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix type casting for GCM tag in us_crypto.cpp


  Commit: d1215ab67e2f9e4aa0bcf349eac8da7f58a9be6a
      https://github.com/ehb54/ultrascan3/commit/d1215ab67e2f9e4aa0bcf349eac8da7f58a9be6a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm

  Log Message:
  -----------
  mod: update 128x128 us-gmp icon and remove others


  Commit: ff02149480e771cbc205a241cee2322ae52a5ea3
      https://github.com/ehb54/ultrascan3/commit/ff02149480e771cbc205a241cee2322ae52a5ea3
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R propignore
    R proppng
    R proptext

  Log Message:
  -----------
  mod: delete svn files


  Commit: 0d744f1905b897d66da68befb43637e8ac4cd7bc
      https://github.com/ehb54/ultrascan3/commit/0d744f1905b897d66da68befb43637e8ac4cd7bc
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R README.linguist
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  mod: remove deprecated translation files and settings


  Commit: 722ffd5c4e0c7d1f2f2c27127e065270ae3c7598
      https://github.com/ehb54/ultrascan3/commit/722ffd5c4e0c7d1f2f2c27127e065270ae3c7598
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm

  Log Message:
  -----------
  Merge pull request #380 from ehb54/773-request-update-us-3-gmp-icons

Icon Maintenance


  Commit: 47dbf4a3837c551d64f6436f25aa7f5f7d482fad
      https://github.com/ehb54/ultrascan3/commit/47dbf4a3837c551d64f6436f25aa7f5f7d482fad
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:

  Log Message:
  -----------
  Merge branch 'main' into 775-bug-svn-files


  Commit: 93fb5f9f839b1aea6d85ed568acc18030ebed5c1
      https://github.com/ehb54/ultrascan3/commit/93fb5f9f839b1aea6d85ed568acc18030ebed5c1
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:

  Log Message:
  -----------
  Merge branch 'main' into 756-bug-translation-maintenance


  Commit: fe5370afd345acf40744a8c872c09eef88887bba
      https://github.com/ehb54/ultrascan3/commit/fe5370afd345acf40744a8c872c09eef88887bba
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R propignore
    R proppng
    R proptext

  Log Message:
  -----------
  Merge pull request #381 from ehb54/775-bug-svn-files

Remove Legacy SVN Files


  Commit: b1b7bdf318164406971f4188a7b3cf8b0aacbbaa
      https://github.com/ehb54/ultrascan3/commit/b1b7bdf318164406971f4188a7b3cf8b0aacbbaa
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:

  Log Message:
  -----------
  Merge branch 'main' into 756-bug-translation-maintenance


  Commit: 90e9cf2eb989a85420f4668067092a143d4457a9
      https://github.com/ehb54/ultrascan3/commit/90e9cf2eb989a85420f4668067092a143d4457a9
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R README.linguist
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  Merge pull request #382 from ehb54/756-bug-translation-maintenance

Translation File Maintenance


  Commit: 300852b8d51c2733817729fab46d6d0e68f5e717
      https://github.com/ehb54/ultrascan3/commit/300852b8d51c2733817729fab46d6d0e68f5e717
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_crypto_buffer_overflow


  Commit: 9c62b533654400def76e5db0eb8c8f4924ff66d1
      https://github.com/ehb54/ultrascan3/commit/9c62b533654400def76e5db0eb8c8f4924ff66d1
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_spectrodata.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  Merge pull request #383 from ehb54/main

Update feature branch to main


  Commit: 0f7d005ceda3b8031c1180200237d736f60a1b4c
      https://github.com/ehb54/ultrascan3/commit/0f7d005ceda3b8031c1180200237d736f60a1b4c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h

  Log Message:
  -----------
  Merge pull request #379 from ehb54/lukas/us_crypto_buffer_overflow

us_crypto: Avoid buffer overflow, support longer passwords, introduce safer encryption


  Commit: 780dac6301b72554362f7cc2944a17a6c64d2aa5
      https://github.com/ehb54/ultrascan3/commit/780dac6301b72554362f7cc2944a17a6c64d2aa5
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Refactor `US_AstfemMath`: improve low acceleration rate handling by adding corrections for slow experiments and original `timestate` checks.


  Commit: 01be09bde2a7cc42512e4a4f215108a9419c0d32
      https://github.com/ehb54/ultrascan3/commit/01be09bde2a7cc42512e4a4f215108a9419c0d32
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.h

  Log Message:
  -----------
  Add `prepareTimeState` method and integrate `US_TimeState` into `US_ConvertGui`


  Commit: e0424b860fb5077ab33b7e5db663b721da5ba290
      https://github.com/ehb54/ultrascan3/commit/e0424b860fb5077ab33b7e5db663b721da5ba290
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp

  Log Message:
  -----------
  Refactor `US_ConvertGui`: implement `prepareTimeState` for streamlined time state preparation and integrate into speed step processing logic.


  Commit: 97b756dde416093dc9c7bb730c4958161c0e0232
      https://github.com/ehb54/ultrascan3/commit/97b756dde416093dc9c7bb730c4958161c0e0232
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/timestate


  Commit: ea9b77b204f53d6694d97541134564d0606916a3
      https://github.com/ehb54/ultrascan3/commit/ea9b77b204f53d6694d97541134564d0606916a3
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp

  Log Message:
  -----------
  Refactor `US_ConvertGui`: streamline file handling logic in time state preparation and enable GUI button state based on file existence.


  Commit: 11fa3a30cb824bce1c32920aa3a6b2c307f54f1a
      https://github.com/ehb54/ultrascan3/commit/11fa3a30cb824bce1c32920aa3a6b2c307f54f1a
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Refactor `US_AstfemMath`: replace `qDebug` with `DbgLv` for consistent debug logging.


  Commit: 5eb4adb03f6cf6e0ab2a6163a5d614d3b034d383
      https://github.com/ehb54/ultrascan3/commit/5eb4adb03f6cf6e0ab2a6163a5d614d3b034d383
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M test/utils/test_us_time_state.cpp

  Log Message:
  -----------
  Update `test_us_time_state`: adjust expected version to `2.2` in origin test.


  Commit: 32f3fd93bf886595a3d9b9b0335a74cf5645913a
      https://github.com/ehb54/ultrascan3/commit/32f3fd93bf886595a3d9b9b0335a74cf5645913a
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Initialize `tsobj` with `TIMESTATE_TYPE::ORIGINAL` in `US_TimeState`.


  Commit: f6095ff611d0c2f9f6a04567e6f2a74535dd45fd
      https://github.com/ehb54/ultrascan3/commit/f6095ff611d0c2f9f6a04567e6f2a74535dd45fd
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Initialize `tsobj` with `TIMESTATE_TYPE::ORIGINAL` in `us_xpn_data`.


  Commit: 4cff648f9ba827db6e67e9cedb1a93953e8a0f76
      https://github.com/ehb54/ultrascan3/commit/4cff648f9ba827db6e67e9cedb1a93953e8a0f76
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge pull request #384 from ehb54/lukas/timestate

Add TIMESTATE_TYPE and IMPORT_TYPE support with refactorings


  Commit: 75648618e7f79fde451a6e9f2cf9023d8ed19140
      https://github.com/ehb54/ultrascan3/commit/75648618e7f79fde451a6e9f2cf9023d8ed19140
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h

  Log Message:
  -----------
  Add `load_timestate` methods to `US_ConvertScan` for handling time state from disk or database.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: fb3e874b186e61a3c3b696be002fa6134d681c4e
      https://github.com/ehb54/ultrascan3/commit/fb3e874b186e61a3c3b696be002fa6134d681c4e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h

  Log Message:
  -----------
  Merge pull request #386 from ehb54/lukas/us_pseudo_absorbance_timestate

us_pseudo_absorbance: transfer timestate


  Commit: b4417a6bfd0cfcc840668d21e88718e957734e47
      https://github.com/ehb54/ultrascan3/commit/b4417a6bfd0cfcc840668d21e88718e957734e47
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M test/utils/test_us_time_state.cpp
    M utils/libus_utils.pro
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


Compare: https://github.com/ehb54/ultrascan3/compare/7fad3a4dfaa1...b4417a6bfd0c

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From noreply at github.com  Wed Mar 11 19:07:36 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 11 Mar 2026 18:07:36 -0700
Subject: [us-commits] [ehb54/ultrascan3] f0c8ed: fix: add missing
 dependencies
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/b4417a-09eeb4@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: f0c8ede548bfb3a6f2380059dd1aacf09c6a7883
      https://github.com/ehb54/ultrascan3/commit/f0c8ede548bfb3a6f2380059dd1aacf09c6a7883
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/bootstrap-macos.sh

  Log Message:
  -----------
  fix: add missing dependencies


  Commit: 09eeb4bec49931c943f732f024f1166b882c3e3a
      https://github.com/ehb54/ultrascan3/commit/09eeb4bec49931c943f732f024f1166b882c3e3a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M test/utils/test_us_time_state.cpp
    M utils/libus_utils.pro
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2


Compare: https://github.com/ehb54/ultrascan3/compare/b4417a6bfd0c...09eeb4bec499

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From noreply at github.com  Wed Mar 11 19:36:34 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 11 Mar 2026 18:36:34 -0700
Subject: [us-commits] [ehb54/ultrascan3] 51ba58: fix: add missing
 dependencies
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/09eeb4-51ba58@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 51ba58286eaaa41af877ff9330d19560633e1c16
      https://github.com/ehb54/ultrascan3/commit/51ba58286eaaa41af877ff9330d19560633e1c16
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/bootstrap-macos.sh

  Log Message:
  -----------
  fix: add missing dependencies



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From noreply at github.com  Wed Mar 11 19:56:46 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 11 Mar 2026 18:56:46 -0700
Subject: [us-commits] [ehb54/ultrascan3] 21a5f4: mod: reduce linux disk
 space usage
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/51ba58-21a5f4@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 21a5f4a7ad52a67040b9426ed30a082038813498
      https://github.com/ehb54/ultrascan3/commit/21a5f4a7ad52a67040b9426ed30a082038813498
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: reduce linux disk space usage



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From noreply at github.com  Wed Mar 11 20:04:20 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 11 Mar 2026 19:04:20 -0700
Subject: [us-commits] [ehb54/ultrascan3] 12b7e3: mod: removed vcpkg folder
 creation
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/21a5f4-12b7e3@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 12b7e30a17e5c86f8e9d4960f7e8da86d67b3b4f
      https://github.com/ehb54/ultrascan3/commit/12b7e30a17e5c86f8e9d4960f7e8da86d67b3b4f
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: removed vcpkg folder creation



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From noreply at github.com  Wed Mar 11 20:20:00 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 11 Mar 2026 19:20:00 -0700
Subject: [us-commits] [ehb54/ultrascan3] ece15a: mod: change qt warnings an
 error to force build to...
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/12b7e3-ece15a@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: ece15a944fb55077213717e00f084056004367a7
      https://github.com/ehb54/ultrascan3/commit/ece15a944fb55077213717e00f084056004367a7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinDeploy.cmake

  Log Message:
  -----------
  mod: change qt warnings an error to force build to stop



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From noreply at github.com  Thu Mar 12 02:32:05 2026
From: noreply at github.com (Lukas Dobler)
Date: Thu, 12 Mar 2026 01:32:05 -0700
Subject: [us-commits] [ehb54/ultrascan3] f22ac1: Add support for
 `TIMESTATE_TYPE` and `IMPORT_TYPE`...
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/masterpassword_change/93b2e5-466789@github.com>

  Branch: refs/heads/lukas/masterpassword_change
  Home:   https://github.com/ehb54/ultrascan3
  Commit: f22ac1211864fd6e1e0f4bd0ab603df9a6703163
      https://github.com/ehb54/ultrascan3/commit/f22ac1211864fd6e1e0f4bd0ab603df9a6703163
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M utils/us_astfem_math.cpp
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Add support for `TIMESTATE_TYPE` and `IMPORT_TYPE` in `US_TimeState`: introduce enums, accessor methods, and XML serialization logic.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 92969167df27d9df138b7faee2cb16d988228790
      https://github.com/ehb54/ultrascan3/commit/92969167df27d9df138b7faee2cb16d988228790
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h

  Log Message:
  -----------
  Refactor `US_AstfemMath`: add parameter names to function signatures, update `check_acceleration` to include optional `timestate` argument, and adjust related logic.


  Commit: 9c62b533654400def76e5db0eb8c8f4924ff66d1
      https://github.com/ehb54/ultrascan3/commit/9c62b533654400def76e5db0eb8c8f4924ff66d1
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_spectrodata.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  Merge pull request #383 from ehb54/main

Update feature branch to main


  Commit: 780dac6301b72554362f7cc2944a17a6c64d2aa5
      https://github.com/ehb54/ultrascan3/commit/780dac6301b72554362f7cc2944a17a6c64d2aa5
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Refactor `US_AstfemMath`: improve low acceleration rate handling by adding corrections for slow experiments and original `timestate` checks.


  Commit: 01be09bde2a7cc42512e4a4f215108a9419c0d32
      https://github.com/ehb54/ultrascan3/commit/01be09bde2a7cc42512e4a4f215108a9419c0d32
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.h

  Log Message:
  -----------
  Add `prepareTimeState` method and integrate `US_TimeState` into `US_ConvertGui`


  Commit: e0424b860fb5077ab33b7e5db663b721da5ba290
      https://github.com/ehb54/ultrascan3/commit/e0424b860fb5077ab33b7e5db663b721da5ba290
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp

  Log Message:
  -----------
  Refactor `US_ConvertGui`: implement `prepareTimeState` for streamlined time state preparation and integrate into speed step processing logic.


  Commit: 97b756dde416093dc9c7bb730c4958161c0e0232
      https://github.com/ehb54/ultrascan3/commit/97b756dde416093dc9c7bb730c4958161c0e0232
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/timestate


  Commit: ea9b77b204f53d6694d97541134564d0606916a3
      https://github.com/ehb54/ultrascan3/commit/ea9b77b204f53d6694d97541134564d0606916a3
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp

  Log Message:
  -----------
  Refactor `US_ConvertGui`: streamline file handling logic in time state preparation and enable GUI button state based on file existence.


  Commit: 11fa3a30cb824bce1c32920aa3a6b2c307f54f1a
      https://github.com/ehb54/ultrascan3/commit/11fa3a30cb824bce1c32920aa3a6b2c307f54f1a
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Refactor `US_AstfemMath`: replace `qDebug` with `DbgLv` for consistent debug logging.


  Commit: 5eb4adb03f6cf6e0ab2a6163a5d614d3b034d383
      https://github.com/ehb54/ultrascan3/commit/5eb4adb03f6cf6e0ab2a6163a5d614d3b034d383
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M test/utils/test_us_time_state.cpp

  Log Message:
  -----------
  Update `test_us_time_state`: adjust expected version to `2.2` in origin test.


  Commit: 32f3fd93bf886595a3d9b9b0335a74cf5645913a
      https://github.com/ehb54/ultrascan3/commit/32f3fd93bf886595a3d9b9b0335a74cf5645913a
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Initialize `tsobj` with `TIMESTATE_TYPE::ORIGINAL` in `US_TimeState`.


  Commit: f6095ff611d0c2f9f6a04567e6f2a74535dd45fd
      https://github.com/ehb54/ultrascan3/commit/f6095ff611d0c2f9f6a04567e6f2a74535dd45fd
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Initialize `tsobj` with `TIMESTATE_TYPE::ORIGINAL` in `us_xpn_data`.


  Commit: 4cff648f9ba827db6e67e9cedb1a93953e8a0f76
      https://github.com/ehb54/ultrascan3/commit/4cff648f9ba827db6e67e9cedb1a93953e8a0f76
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge pull request #384 from ehb54/lukas/timestate

Add TIMESTATE_TYPE and IMPORT_TYPE support with refactorings


  Commit: 75648618e7f79fde451a6e9f2cf9023d8ed19140
      https://github.com/ehb54/ultrascan3/commit/75648618e7f79fde451a6e9f2cf9023d8ed19140
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h

  Log Message:
  -----------
  Add `load_timestate` methods to `US_ConvertScan` for handling time state from disk or database.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: fb3e874b186e61a3c3b696be002fa6134d681c4e
      https://github.com/ehb54/ultrascan3/commit/fb3e874b186e61a3c3b696be002fa6134d681c4e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h

  Log Message:
  -----------
  Merge pull request #386 from ehb54/lukas/us_pseudo_absorbance_timestate

us_pseudo_absorbance: transfer timestate


  Commit: 466789a804273570c11c7cb44bf28924caa363df
      https://github.com/ehb54/ultrascan3/commit/466789a804273570c11c7cb44bf28924caa363df
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


Compare: https://github.com/ehb54/ultrascan3/compare/93b2e5a2535f...466789a80427

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From noreply at github.com  Thu Mar 12 08:12:50 2026
From: noreply at github.com (aaron-auc)
Date: Thu, 12 Mar 2026 07:12:50 -0700
Subject: [us-commits] [ehb54/ultrascan3] 80474c: mod: reduce to 2 cores for
 ubuntu
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/ece15a-80474c@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 80474c759ff865d72c8c6043ba64d38bf98e1e15
      https://github.com/ehb54/ultrascan3/commit/80474c759ff865d72c8c6043ba64d38bf98e1e15
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: reduce to 2 cores for ubuntu



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From noreply at github.com  Thu Mar 12 10:36:54 2026
From: noreply at github.com (Saeed Mortezazadeh)
Date: Thu, 12 Mar 2026 09:36:54 -0700
Subject: [us-commits] [ehb54/ultrascan3] 935d35: add help button to the
 us_legacy_converter
Message-ID: <ehb54/ultrascan3/push/refs/heads/main/fb3e87-2e8101@github.com>

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 935d35d3bb247201260925626ead40c7e5911908
      https://github.com/ehb54/ultrascan3/commit/935d35d3bb247201260925626ead40c7e5911908
  Author: Saeed <github.com/samo38>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h

  Log Message:
  -----------
  add help button to the us_legacy_converter


  Commit: a39e0c3fc901b37000aa384dff633eca9b5f21cc
      https://github.com/ehb54/ultrascan3/commit/a39e0c3fc901b37000aa384dff633eca9b5f21cc
  Author: Saeed <github.com/samo38>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h

  Log Message:
  -----------
  us_query_rmsd: add help button


  Commit: 9332b11c468511b91b824048956f411d88e92ba2
      https://github.com/ehb54/ultrascan3/commit/9332b11c468511b91b824048956f411d88e92ba2
  Author: Saeed <github.com/samo38>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  add help buttons


  Commit: 4bb72c42f9441f20b9b825741d31d186a728fe4c
      https://github.com/ehb54/ultrascan3/commit/4bb72c42f9441f20b9b825741d31d186a728fe4c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-osx-dynamic.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    M admin/cmake/triplets/x64-osx-dynamic.cmake
    R alpha/srcdevel
    R alpha/us.cpp
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M gui/us_analysis_base2.cpp
    M gui/us_analysis_base2.h
    M gui/us_csv_loader.cpp
    M gui/us_model_loader.cpp
    M gui/us_plot.cpp
    M gui/us_report_gui.cpp
    M gui/us_report_gui.h
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_2dsa/us_2dsa.h
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_dcdt/us_dcdt.cpp
    M programs/us_dcdt/us_dcdt.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_fit_meniscus/CMakeLists.txt
    M programs/us_fit_meniscus/us_fit_meniscus.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h
    M programs/us_pcsa/us_pcsa.cpp
    M programs/us_pcsa/us_pcsa.h
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_second_moment/us_second_moment.cpp
    M programs/us_second_moment/us_second_moment.h
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.h
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    A test/utils/test_us_regex.cpp
    M utils/CMakeLists.txt
    M utils/us_csv_data.cpp
    R vcpkg
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into ticket_747


  Commit: e9f9ae1d960fb6e262803ee6b522247b68cf8894
      https://github.com/ehb54/ultrascan3/commit/e9f9ae1d960fb6e262803ee6b522247b68cf8894
  Author: Saeed <samo38:github>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_spectrodata.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M utils/libus_utils.pro
    M utils/us_crypto.cpp
    M utils/us_crypto.h

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_747


  Commit: ae52535acb54fede063aaaefd18be0c4ec92474b
      https://github.com/ehb54/ultrascan3/commit/ae52535acb54fede063aaaefd18be0c4ec92474b
  Author: Saeed <samo38:github>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_747


  Commit: 2e81015b2e85d24c6d0619f563c9053fcb5de9e1
      https://github.com/ehb54/ultrascan3/commit/2e81015b2e85d24c6d0619f563c9053fcb5de9e1
  Author: Saeed Mortezazadeh <49119048+samo38 at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge pull request #373 from samo38/ticket_747

Ticket 747: add US_Help to us_legacy_converter, us_query_rmsd, us_extinction, us_spectrum, us_ramp


Compare: https://github.com/ehb54/ultrascan3/compare/fb3e874b186e...2e81015b2e85

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From noreply at github.com  Thu Mar 12 14:04:22 2026
From: noreply at github.com (aaron-auc)
Date: Thu, 12 Mar 2026 13:04:22 -0700
Subject: [us-commits] [ehb54/ultrascan3] 935d35: add help button to the
 us_legacy_converter
Message-ID: <ehb54/ultrascan3/push/refs/heads/ehb54-issue-670/fd116b-e9f095@github.com>

  Branch: refs/heads/ehb54-issue-670
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 935d35d3bb247201260925626ead40c7e5911908
      https://github.com/ehb54/ultrascan3/commit/935d35d3bb247201260925626ead40c7e5911908
  Author: Saeed <github.com/samo38>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h

  Log Message:
  -----------
  add help button to the us_legacy_converter


  Commit: a39e0c3fc901b37000aa384dff633eca9b5f21cc
      https://github.com/ehb54/ultrascan3/commit/a39e0c3fc901b37000aa384dff633eca9b5f21cc
  Author: Saeed <github.com/samo38>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h

  Log Message:
  -----------
  us_query_rmsd: add help button


  Commit: 9332b11c468511b91b824048956f411d88e92ba2
      https://github.com/ehb54/ultrascan3/commit/9332b11c468511b91b824048956f411d88e92ba2
  Author: Saeed <github.com/samo38>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  add help buttons


  Commit: 4bb72c42f9441f20b9b825741d31d186a728fe4c
      https://github.com/ehb54/ultrascan3/commit/4bb72c42f9441f20b9b825741d31d186a728fe4c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-osx-dynamic.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    M admin/cmake/triplets/x64-osx-dynamic.cmake
    R alpha/srcdevel
    R alpha/us.cpp
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M gui/us_analysis_base2.cpp
    M gui/us_analysis_base2.h
    M gui/us_csv_loader.cpp
    M gui/us_model_loader.cpp
    M gui/us_plot.cpp
    M gui/us_report_gui.cpp
    M gui/us_report_gui.h
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_2dsa/us_2dsa.h
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_dcdt/us_dcdt.cpp
    M programs/us_dcdt/us_dcdt.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_fit_meniscus/CMakeLists.txt
    M programs/us_fit_meniscus/us_fit_meniscus.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h
    M programs/us_pcsa/us_pcsa.cpp
    M programs/us_pcsa/us_pcsa.h
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_second_moment/us_second_moment.cpp
    M programs/us_second_moment/us_second_moment.h
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.h
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    A test/utils/test_us_regex.cpp
    M utils/CMakeLists.txt
    M utils/us_csv_data.cpp
    R vcpkg
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into ticket_747


  Commit: e9f9ae1d960fb6e262803ee6b522247b68cf8894
      https://github.com/ehb54/ultrascan3/commit/e9f9ae1d960fb6e262803ee6b522247b68cf8894
  Author: Saeed <samo38:github>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_spectrodata.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M utils/libus_utils.pro
    M utils/us_crypto.cpp
    M utils/us_crypto.h

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_747


  Commit: ae52535acb54fede063aaaefd18be0c4ec92474b
      https://github.com/ehb54/ultrascan3/commit/ae52535acb54fede063aaaefd18be0c4ec92474b
  Author: Saeed <samo38:github>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_747


  Commit: 2e81015b2e85d24c6d0619f563c9053fcb5de9e1
      https://github.com/ehb54/ultrascan3/commit/2e81015b2e85d24c6d0619f563c9053fcb5de9e1
  Author: Saeed Mortezazadeh <49119048+samo38 at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge pull request #373 from samo38/ticket_747

Ticket 747: add US_Help to us_legacy_converter, us_query_rmsd, us_extinction, us_spectrum, us_ramp


  Commit: e9f0952dea5d8bb82a866082b546997a3e457ec4
      https://github.com/ehb54/ultrascan3/commit/e9f0952dea5d8bb82a866082b546997a3e457ec4
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


Compare: https://github.com/ehb54/ultrascan3/compare/fd116b43987c...e9f0952dea5d

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From noreply at github.com  Thu Mar 12 14:14:55 2026
From: noreply at github.com (aaron-auc)
Date: Thu, 12 Mar 2026 13:14:55 -0700
Subject: [us-commits] [ehb54/ultrascan3] 935d35: add help button to the
 us_legacy_converter
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/80474c-c4af75@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 935d35d3bb247201260925626ead40c7e5911908
      https://github.com/ehb54/ultrascan3/commit/935d35d3bb247201260925626ead40c7e5911908
  Author: Saeed <github.com/samo38>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h

  Log Message:
  -----------
  add help button to the us_legacy_converter


  Commit: a39e0c3fc901b37000aa384dff633eca9b5f21cc
      https://github.com/ehb54/ultrascan3/commit/a39e0c3fc901b37000aa384dff633eca9b5f21cc
  Author: Saeed <github.com/samo38>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h

  Log Message:
  -----------
  us_query_rmsd: add help button


  Commit: 9332b11c468511b91b824048956f411d88e92ba2
      https://github.com/ehb54/ultrascan3/commit/9332b11c468511b91b824048956f411d88e92ba2
  Author: Saeed <github.com/samo38>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  add help buttons


  Commit: 4bb72c42f9441f20b9b825741d31d186a728fe4c
      https://github.com/ehb54/ultrascan3/commit/4bb72c42f9441f20b9b825741d31d186a728fe4c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-osx-dynamic.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    M admin/cmake/triplets/x64-osx-dynamic.cmake
    R alpha/srcdevel
    R alpha/us.cpp
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M gui/us_analysis_base2.cpp
    M gui/us_analysis_base2.h
    M gui/us_csv_loader.cpp
    M gui/us_model_loader.cpp
    M gui/us_plot.cpp
    M gui/us_report_gui.cpp
    M gui/us_report_gui.h
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_2dsa/us_2dsa.h
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_dcdt/us_dcdt.cpp
    M programs/us_dcdt/us_dcdt.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_fit_meniscus/CMakeLists.txt
    M programs/us_fit_meniscus/us_fit_meniscus.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h
    M programs/us_pcsa/us_pcsa.cpp
    M programs/us_pcsa/us_pcsa.h
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_second_moment/us_second_moment.cpp
    M programs/us_second_moment/us_second_moment.h
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.h
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    A test/utils/test_us_regex.cpp
    M utils/CMakeLists.txt
    M utils/us_csv_data.cpp
    R vcpkg
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into ticket_747


  Commit: e9f9ae1d960fb6e262803ee6b522247b68cf8894
      https://github.com/ehb54/ultrascan3/commit/e9f9ae1d960fb6e262803ee6b522247b68cf8894
  Author: Saeed <samo38:github>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_spectrodata.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M utils/libus_utils.pro
    M utils/us_crypto.cpp
    M utils/us_crypto.h

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_747


  Commit: ae52535acb54fede063aaaefd18be0c4ec92474b
      https://github.com/ehb54/ultrascan3/commit/ae52535acb54fede063aaaefd18be0c4ec92474b
  Author: Saeed <samo38:github>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_747


  Commit: 2e81015b2e85d24c6d0619f563c9053fcb5de9e1
      https://github.com/ehb54/ultrascan3/commit/2e81015b2e85d24c6d0619f563c9053fcb5de9e1
  Author: Saeed Mortezazadeh <49119048+samo38 at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge pull request #373 from samo38/ticket_747

Ticket 747: add US_Help to us_legacy_converter, us_query_rmsd, us_extinction, us_spectrum, us_ramp


  Commit: c4af75ba6a8e299d819034f87528f9d6997e469f
      https://github.com/ehb54/ultrascan3/commit/c4af75ba6a8e299d819034f87528f9d6997e469f
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


Compare: https://github.com/ehb54/ultrascan3/compare/80474c759ff8...c4af75ba6a8e

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From noreply at github.com  Thu Mar 12 14:55:42 2026
From: noreply at github.com (alexsav815)
Date: Thu, 12 Mar 2026 13:55:42 -0700
Subject: [us-commits] [ehb54/us3_sql]
Message-ID: <ehb54/us3_sql/push/refs/heads/alexey-dev-for-issue784/000000-5aa1df@github.com>

  Branch: refs/heads/alexey-dev-for-issue784
  Home:   https://github.com/ehb54/us3_sql

To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/us3_sql/settings/notifications

From noreply at github.com  Thu Mar 12 15:19:41 2026
From: noreply at github.com (alexsav815)
Date: Thu, 12 Mar 2026 14:19:41 -0700
Subject: [us-commits] [ehb54/us3_sql] b3637d: Update timestamp2UTC function
 to take care of time...
Message-ID: <ehb54/us3_sql/push/refs/heads/alexey-dev-for-issue784/5aa1df-b3637d@github.com>

  Branch: refs/heads/alexey-dev-for-issue784
  Home:   https://github.com/ehb54/us3_sql
  Commit: b3637dd10d6aaad0fdc66c67da4f2e9425823173
      https://github.com/ehb54/us3_sql/commit/b3637dd10d6aaad0fdc66c67da4f2e9425823173
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M us3_procedures.sql

  Log Message:
  -----------
  Update timestamp2UTC function to take care of time gaps due to time change - prevented multiple store procedures executions resulting in GMP & stand-alone programs crash/problems...



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From noreply at github.com  Thu Mar 12 15:27:36 2026
From: noreply at github.com (alexsav815)
Date: Thu, 12 Mar 2026 14:27:36 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue784/a5cb47-000000@github.com>

  Branch: refs/heads/alexey-dev-issue784
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Thu Mar 12 20:50:48 2026
From: noreply at github.com (aaron-auc)
Date: Thu, 12 Mar 2026 19:50:48 -0700
Subject: [us-commits] [ehb54/ultrascan3] 0f81d3: mod: move checks to
 bootstrap
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/c4af75-4ff503@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 0f81d3f0d1fb567b1e570ed90147a17f49e57c1f
      https://github.com/ehb54/ultrascan3/commit/0f81d3f0d1fb567b1e570ed90147a17f49e57c1f
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    M admin/cmake/packaging/windows/WinDeploy.cmake
    R scripts/bootstrap-deps.sh
    A scripts/bootstrap-linux.sh
    M scripts/bootstrap-macos.sh
    M scripts/build.sh
    M utils/CMakeLists.txt
    M vcpkg.json

  Log Message:
  -----------
  mod: move checks to bootstrap


  Commit: 4ff50388194860753c3e8bc4d697e944ce0f1641
      https://github.com/ehb54/ultrascan3/commit/4ff50388194860753c3e8bc4d697e944ce0f1641
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2


Compare: https://github.com/ehb54/ultrascan3/compare/c4af75ba6a8e...4ff503881948

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From noreply at github.com  Fri Mar 13 01:38:48 2026
From: noreply at github.com (Lukas Dobler)
Date: Fri, 13 Mar 2026 00:38:48 -0700
Subject: [us-commits] [ehb54/ultrascan3] 935d35: add help button to the
 us_legacy_converter
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/masterpassword_change/466789-73d3d9@github.com>

  Branch: refs/heads/lukas/masterpassword_change
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 935d35d3bb247201260925626ead40c7e5911908
      https://github.com/ehb54/ultrascan3/commit/935d35d3bb247201260925626ead40c7e5911908
  Author: Saeed <github.com/samo38>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h

  Log Message:
  -----------
  add help button to the us_legacy_converter


  Commit: a39e0c3fc901b37000aa384dff633eca9b5f21cc
      https://github.com/ehb54/ultrascan3/commit/a39e0c3fc901b37000aa384dff633eca9b5f21cc
  Author: Saeed <github.com/samo38>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h

  Log Message:
  -----------
  us_query_rmsd: add help button


  Commit: 9332b11c468511b91b824048956f411d88e92ba2
      https://github.com/ehb54/ultrascan3/commit/9332b11c468511b91b824048956f411d88e92ba2
  Author: Saeed <github.com/samo38>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  add help buttons


  Commit: 4bb72c42f9441f20b9b825741d31d186a728fe4c
      https://github.com/ehb54/ultrascan3/commit/4bb72c42f9441f20b9b825741d31d186a728fe4c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-osx-dynamic.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    M admin/cmake/triplets/x64-osx-dynamic.cmake
    R alpha/srcdevel
    R alpha/us.cpp
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M gui/us_analysis_base2.cpp
    M gui/us_analysis_base2.h
    M gui/us_csv_loader.cpp
    M gui/us_model_loader.cpp
    M gui/us_plot.cpp
    M gui/us_report_gui.cpp
    M gui/us_report_gui.h
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_2dsa/us_2dsa.h
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_dcdt/us_dcdt.cpp
    M programs/us_dcdt/us_dcdt.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_fit_meniscus/CMakeLists.txt
    M programs/us_fit_meniscus/us_fit_meniscus.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h
    M programs/us_pcsa/us_pcsa.cpp
    M programs/us_pcsa/us_pcsa.h
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_second_moment/us_second_moment.cpp
    M programs/us_second_moment/us_second_moment.h
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.h
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    A test/utils/test_us_regex.cpp
    M utils/CMakeLists.txt
    M utils/us_csv_data.cpp
    R vcpkg
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into ticket_747


  Commit: e9f9ae1d960fb6e262803ee6b522247b68cf8894
      https://github.com/ehb54/ultrascan3/commit/e9f9ae1d960fb6e262803ee6b522247b68cf8894
  Author: Saeed <samo38:github>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_spectrodata.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M utils/libus_utils.pro
    M utils/us_crypto.cpp
    M utils/us_crypto.h

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_747


  Commit: ae52535acb54fede063aaaefd18be0c4ec92474b
      https://github.com/ehb54/ultrascan3/commit/ae52535acb54fede063aaaefd18be0c4ec92474b
  Author: Saeed <samo38:github>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_747


  Commit: 2e81015b2e85d24c6d0619f563c9053fcb5de9e1
      https://github.com/ehb54/ultrascan3/commit/2e81015b2e85d24c6d0619f563c9053fcb5de9e1
  Author: Saeed Mortezazadeh <49119048+samo38 at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge pull request #373 from samo38/ticket_747

Ticket 747: add US_Help to us_legacy_converter, us_query_rmsd, us_extinction, us_spectrum, us_ramp


  Commit: 73d3d9961c360d61b70b25d54f762c7f7435325e
      https://github.com/ehb54/ultrascan3/commit/73d3d9961c360d61b70b25d54f762c7f7435325e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


Compare: https://github.com/ehb54/ultrascan3/compare/466789a80427...73d3d9961c36

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From noreply at github.com  Fri Mar 13 01:38:56 2026
From: noreply at github.com (Lukas Dobler)
Date: Fri, 13 Mar 2026 00:38:56 -0700
Subject: [us-commits] [ehb54/ultrascan3] 935d35: add help button to the
 us_legacy_converter
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_edit_scan_exclude_click/d73cc2-a54f8e@github.com>

  Branch: refs/heads/lukas/us_edit_scan_exclude_click
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 935d35d3bb247201260925626ead40c7e5911908
      https://github.com/ehb54/ultrascan3/commit/935d35d3bb247201260925626ead40c7e5911908
  Author: Saeed <github.com/samo38>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h

  Log Message:
  -----------
  add help button to the us_legacy_converter


  Commit: a39e0c3fc901b37000aa384dff633eca9b5f21cc
      https://github.com/ehb54/ultrascan3/commit/a39e0c3fc901b37000aa384dff633eca9b5f21cc
  Author: Saeed <github.com/samo38>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h

  Log Message:
  -----------
  us_query_rmsd: add help button


  Commit: 9332b11c468511b91b824048956f411d88e92ba2
      https://github.com/ehb54/ultrascan3/commit/9332b11c468511b91b824048956f411d88e92ba2
  Author: Saeed <github.com/samo38>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  add help buttons


  Commit: 4bb72c42f9441f20b9b825741d31d186a728fe4c
      https://github.com/ehb54/ultrascan3/commit/4bb72c42f9441f20b9b825741d31d186a728fe4c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-osx-dynamic.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    M admin/cmake/triplets/x64-osx-dynamic.cmake
    R alpha/srcdevel
    R alpha/us.cpp
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M gui/us_analysis_base2.cpp
    M gui/us_analysis_base2.h
    M gui/us_csv_loader.cpp
    M gui/us_model_loader.cpp
    M gui/us_plot.cpp
    M gui/us_report_gui.cpp
    M gui/us_report_gui.h
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_2dsa/us_2dsa.h
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_dcdt/us_dcdt.cpp
    M programs/us_dcdt/us_dcdt.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_fit_meniscus/CMakeLists.txt
    M programs/us_fit_meniscus/us_fit_meniscus.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h
    M programs/us_pcsa/us_pcsa.cpp
    M programs/us_pcsa/us_pcsa.h
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_second_moment/us_second_moment.cpp
    M programs/us_second_moment/us_second_moment.h
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.h
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    A test/utils/test_us_regex.cpp
    M utils/CMakeLists.txt
    M utils/us_csv_data.cpp
    R vcpkg
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into ticket_747


  Commit: e9f9ae1d960fb6e262803ee6b522247b68cf8894
      https://github.com/ehb54/ultrascan3/commit/e9f9ae1d960fb6e262803ee6b522247b68cf8894
  Author: Saeed <samo38:github>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_spectrodata.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M utils/libus_utils.pro
    M utils/us_crypto.cpp
    M utils/us_crypto.h

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_747


  Commit: ae52535acb54fede063aaaefd18be0c4ec92474b
      https://github.com/ehb54/ultrascan3/commit/ae52535acb54fede063aaaefd18be0c4ec92474b
  Author: Saeed <samo38:github>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_747


  Commit: 2e81015b2e85d24c6d0619f563c9053fcb5de9e1
      https://github.com/ehb54/ultrascan3/commit/2e81015b2e85d24c6d0619f563c9053fcb5de9e1
  Author: Saeed Mortezazadeh <49119048+samo38 at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge pull request #373 from samo38/ticket_747

Ticket 747: add US_Help to us_legacy_converter, us_query_rmsd, us_extinction, us_spectrum, us_ramp


  Commit: a54f8e2bc39c26f3e2f95dae43da15eb743e4d25
      https://github.com/ehb54/ultrascan3/commit/a54f8e2bc39c26f3e2f95dae43da15eb743e4d25
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


Compare: https://github.com/ehb54/ultrascan3/compare/d73cc2971816...a54f8e2bc39c

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From noreply at github.com  Fri Mar 13 10:59:47 2026
From: noreply at github.com (aaron-auc)
Date: Fri, 13 Mar 2026 09:59:47 -0700
Subject: [us-commits] [ehb54/ultrascan3] 82349a: mod: add platform safe check
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/4ff503-82349a@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 82349a16124679984a45c562feb3f2583dbdb531
      https://github.com/ehb54/ultrascan3/commit/82349a16124679984a45c562feb3f2583dbdb531
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: add platform safe check



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From noreply at github.com  Fri Mar 13 15:11:16 2026
From: noreply at github.com (Lukas Dobler)
Date: Fri, 13 Mar 2026 14:11:16 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/qt6-msvc/000000-2e8101@github.com>

  Branch: refs/heads/lukas/qt6-msvc
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Fri Mar 13 15:12:20 2026
From: noreply at github.com (Lukas Dobler)
Date: Fri, 13 Mar 2026 14:12:20 -0700
Subject: [us-commits] [ehb54/ultrascan3] 8fbf53: Include OpenSSL applink for
 MSVC on Windows
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/qt6-msvc/2e8101-8fbf53@github.com>

  Branch: refs/heads/lukas/qt6-msvc
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 8fbf539a26017728861e732dc1d18eb23eb5767b
      https://github.com/ehb54/ultrascan3/commit/8fbf539a26017728861e732dc1d18eb23eb5767b
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt

  Log Message:
  -----------
  Include OpenSSL applink for MSVC on Windows

Add OpenSSL applink shim for MSVC on Windows.



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From noreply at github.com  Fri Mar 13 15:14:45 2026
From: noreply at github.com (Lukas Dobler)
Date: Fri, 13 Mar 2026 14:14:45 -0700
Subject: [us-commits] [ehb54/ultrascan3] 062c3d: Replace 'using namespace
 std' with std:: in us_tim...
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/qt6-msvc/8fbf53-062c3d@github.com>

  Branch: refs/heads/lukas/qt6-msvc
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 062c3d2366cc1939df31abf0a90ee9aa81093ffe
      https://github.com/ehb54/ultrascan3/commit/062c3d2366cc1939df31abf0a90ee9aa81093ffe
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M utils/us_timer.h

  Log Message:
  -----------
  Replace 'using namespace std' with std:: in us_timer.h

Prevent windows specific type definition conflicts caused by using namespace std;



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From noreply at github.com  Fri Mar 13 16:30:09 2026
From: noreply at github.com (Lukas Dobler)
Date: Fri, 13 Mar 2026 15:30:09 -0700
Subject: [us-commits] [ehb54/ultrascan3] d285de: Update builtin-baseline
 version in vcpkg.json
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/qt6-msvc/062c3d-d285de@github.com>

  Branch: refs/heads/lukas/qt6-msvc
  Home:   https://github.com/ehb54/ultrascan3
  Commit: d285dea10ab7bcc93c14b4f74e336121a728f25a
      https://github.com/ehb54/ultrascan3/commit/d285dea10ab7bcc93c14b4f74e336121a728f25a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M vcpkg.json

  Log Message:
  -----------
  Update builtin-baseline version in vcpkg.json



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From noreply at github.com  Fri Mar 13 17:36:16 2026
From: noreply at github.com (Lukas Dobler)
Date: Fri, 13 Mar 2026 16:36:16 -0700
Subject: [us-commits] [ehb54/ultrascan3] 2528e2: Enhance CMakeLists for Qt6
 post-build handling
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/qt6-msvc/d285de-2528e2@github.com>

  Branch: refs/heads/lukas/qt6-msvc
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 2528e2d95ef721c90585880700173e01e85eaa41
      https://github.com/ehb54/ultrascan3/commit/2528e2d95ef721c90585880700173e01e85eaa41
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  Enhance CMakeLists for Qt6 post-build handling

Added post-build commands for Qt6 integration in Debug and Release modes.



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From noreply at github.com  Fri Mar 13 18:18:34 2026
From: noreply at github.com (Lukas Dobler)
Date: Fri, 13 Mar 2026 17:18:34 -0700
Subject: [us-commits] [ehb54/ultrascan3] 52e46a: Refactor post-build
 commands for Qt6 on Windows
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/qt6-msvc/2528e2-52e46a@github.com>

  Branch: refs/heads/lukas/qt6-msvc
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 52e46a6c204f209f206de1b17187485510b50872
      https://github.com/ehb54/ultrascan3/commit/52e46a6c204f209f206de1b17187485510b50872
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  Refactor post-build commands for Qt6 on Windows



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From noreply at github.com  Fri Mar 13 18:19:11 2026
From: noreply at github.com (Lukas Dobler)
Date: Fri, 13 Mar 2026 17:19:11 -0700
Subject: [us-commits] [ehb54/ultrascan3] 428287: Add map include to
 us_timer.h
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/qt6-msvc/52e46a-428287@github.com>

  Branch: refs/heads/lukas/qt6-msvc
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 428287d058712bdf7736b86456a19b29730bec50
      https://github.com/ehb54/ultrascan3/commit/428287d058712bdf7736b86456a19b29730bec50
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M utils/us_timer.h

  Log Message:
  -----------
  Add map include to us_timer.h



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From noreply at github.com  Fri Mar 13 18:19:49 2026
From: noreply at github.com (Lukas Dobler)
Date: Fri, 13 Mar 2026 17:19:49 -0700
Subject: [us-commits] [ehb54/ultrascan3] b1e945: Add OpenSSL applink
 condition for MSVC on Windows
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/qt6-msvc/428287-b1e945@github.com>

  Branch: refs/heads/lukas/qt6-msvc
  Home:   https://github.com/ehb54/ultrascan3
  Commit: b1e9456925a223045bd903ef52c4096e0e3675dc
      https://github.com/ehb54/ultrascan3/commit/b1e9456925a223045bd903ef52c4096e0e3675dc
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt

  Log Message:
  -----------
  Add OpenSSL applink condition for MSVC on Windows



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From noreply at github.com  Fri Mar 13 20:55:01 2026
From: noreply at github.com (alexsav815)
Date: Fri, 13 Mar 2026 19:55:01 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue785/000000-2e8101@github.com>

  Branch: refs/heads/alexey-dev-issue785
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Fri Mar 13 22:12:48 2026
From: noreply at github.com (alexsav815)
Date: Fri, 13 Mar 2026 21:12:48 -0700
Subject: [us-commits] [ehb54/ultrascan3] 844f03: GMP: Report -- test
 inclusion of the replica group...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue785/2e8101-844f03@github.com>

  Branch: refs/heads/alexey-dev-issue785
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 844f0378f9d93d9976788b58bd853ff5baafd865
      https://github.com/ehb54/ultrascan3/commit/844f0378f9d93d9976788b58bd853ff5baafd865
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...



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From noreply at github.com  Fri Mar 13 22:47:43 2026
From: noreply at github.com (alexsav815)
Date: Fri, 13 Mar 2026 21:47:43 -0700
Subject: [us-commits] [ehb54/ultrascan3] ef2266: [1]GMP: Report -- test
 inclusion of the replica gr...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue785/844f03-ef2266@github.com>

  Branch: refs/heads/alexey-dev-issue785
  Home:   https://github.com/ehb54/ultrascan3
  Commit: ef226636cf28fac5f0b62c8cc7535c518336f7cd
      https://github.com/ehb54/ultrascan3/commit/ef226636cf28fac5f0b62c8cc7535c518336f7cd
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [1]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...



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From noreply at github.com  Fri Mar 13 23:08:54 2026
From: noreply at github.com (alexsav815)
Date: Fri, 13 Mar 2026 22:08:54 -0700
Subject: [us-commits] [ehb54/ultrascan3] 008ab8: [2]GMP: Report -- test
 inclusion of the replica gr...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue785/ef2266-008ab8@github.com>

  Branch: refs/heads/alexey-dev-issue785
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 008ab8725529f70ff36e4845202c893ddb0e4213
      https://github.com/ehb54/ultrascan3/commit/008ab8725529f70ff36e4845202c893ddb0e4213
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [2]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...



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From noreply at github.com  Fri Mar 13 23:38:41 2026
From: noreply at github.com (alexsav815)
Date: Fri, 13 Mar 2026 22:38:41 -0700
Subject: [us-commits] [ehb54/ultrascan3] cee063: [3]GMP: Report -- test
 inclusion of the replica gr...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue785/008ab8-cee063@github.com>

  Branch: refs/heads/alexey-dev-issue785
  Home:   https://github.com/ehb54/ultrascan3
  Commit: cee06353e7b931a3f580d1bffbeb9f2326d63532
      https://github.com/ehb54/ultrascan3/commit/cee06353e7b931a3f580d1bffbeb9f2326d63532
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [3]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...



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From noreply at github.com  Sat Mar 14 00:31:01 2026
From: noreply at github.com (Lukas Dobler)
Date: Fri, 13 Mar 2026 23:31:01 -0700
Subject: [us-commits] [ehb54/ultrascan3] 8fbf53: Include OpenSSL applink for
 MSVC on Windows
Message-ID: <ehb54/ultrascan3/push/refs/heads/main/2e8101-d9676f@github.com>

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 8fbf539a26017728861e732dc1d18eb23eb5767b
      https://github.com/ehb54/ultrascan3/commit/8fbf539a26017728861e732dc1d18eb23eb5767b
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt

  Log Message:
  -----------
  Include OpenSSL applink for MSVC on Windows

Add OpenSSL applink shim for MSVC on Windows.


  Commit: 062c3d2366cc1939df31abf0a90ee9aa81093ffe
      https://github.com/ehb54/ultrascan3/commit/062c3d2366cc1939df31abf0a90ee9aa81093ffe
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M utils/us_timer.h

  Log Message:
  -----------
  Replace 'using namespace std' with std:: in us_timer.h

Prevent windows specific type definition conflicts caused by using namespace std;


  Commit: d285dea10ab7bcc93c14b4f74e336121a728f25a
      https://github.com/ehb54/ultrascan3/commit/d285dea10ab7bcc93c14b4f74e336121a728f25a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M vcpkg.json

  Log Message:
  -----------
  Update builtin-baseline version in vcpkg.json


  Commit: 2528e2d95ef721c90585880700173e01e85eaa41
      https://github.com/ehb54/ultrascan3/commit/2528e2d95ef721c90585880700173e01e85eaa41
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  Enhance CMakeLists for Qt6 post-build handling

Added post-build commands for Qt6 integration in Debug and Release modes.


  Commit: 52e46a6c204f209f206de1b17187485510b50872
      https://github.com/ehb54/ultrascan3/commit/52e46a6c204f209f206de1b17187485510b50872
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  Refactor post-build commands for Qt6 on Windows


  Commit: 428287d058712bdf7736b86456a19b29730bec50
      https://github.com/ehb54/ultrascan3/commit/428287d058712bdf7736b86456a19b29730bec50
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M utils/us_timer.h

  Log Message:
  -----------
  Add map include to us_timer.h


  Commit: b1e9456925a223045bd903ef52c4096e0e3675dc
      https://github.com/ehb54/ultrascan3/commit/b1e9456925a223045bd903ef52c4096e0e3675dc
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt

  Log Message:
  -----------
  Add OpenSSL applink condition for MSVC on Windows


  Commit: d9676faa3a7a6a92c56faa175bcd24c240a39b0d
      https://github.com/ehb54/ultrascan3/commit/d9676faa3a7a6a92c56faa175bcd24c240a39b0d
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge pull request #389 from ehb54/lukas/qt6-msvc

CMake Qt6 windows compile MSVC


Compare: https://github.com/ehb54/ultrascan3/compare/2e81015b2e85...d9676faa3a7a

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From noreply at github.com  Sat Mar 14 00:31:13 2026
From: noreply at github.com (Lukas Dobler)
Date: Fri, 13 Mar 2026 23:31:13 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/qt6-msvc/b1e945-000000@github.com>

  Branch: refs/heads/lukas/qt6-msvc
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Sat Mar 14 00:31:36 2026
From: noreply at github.com (Lukas Dobler)
Date: Fri, 13 Mar 2026 23:31:36 -0700
Subject: [us-commits] [ehb54/ultrascan3] 8fbf53: Include OpenSSL applink for
 MSVC on Windows
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/masterpassword_change/73d3d9-5c16c0@github.com>

  Branch: refs/heads/lukas/masterpassword_change
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 8fbf539a26017728861e732dc1d18eb23eb5767b
      https://github.com/ehb54/ultrascan3/commit/8fbf539a26017728861e732dc1d18eb23eb5767b
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt

  Log Message:
  -----------
  Include OpenSSL applink for MSVC on Windows

Add OpenSSL applink shim for MSVC on Windows.


  Commit: 062c3d2366cc1939df31abf0a90ee9aa81093ffe
      https://github.com/ehb54/ultrascan3/commit/062c3d2366cc1939df31abf0a90ee9aa81093ffe
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M utils/us_timer.h

  Log Message:
  -----------
  Replace 'using namespace std' with std:: in us_timer.h

Prevent windows specific type definition conflicts caused by using namespace std;


  Commit: d285dea10ab7bcc93c14b4f74e336121a728f25a
      https://github.com/ehb54/ultrascan3/commit/d285dea10ab7bcc93c14b4f74e336121a728f25a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M vcpkg.json

  Log Message:
  -----------
  Update builtin-baseline version in vcpkg.json


  Commit: 2528e2d95ef721c90585880700173e01e85eaa41
      https://github.com/ehb54/ultrascan3/commit/2528e2d95ef721c90585880700173e01e85eaa41
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  Enhance CMakeLists for Qt6 post-build handling

Added post-build commands for Qt6 integration in Debug and Release modes.


  Commit: 52e46a6c204f209f206de1b17187485510b50872
      https://github.com/ehb54/ultrascan3/commit/52e46a6c204f209f206de1b17187485510b50872
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  Refactor post-build commands for Qt6 on Windows


  Commit: 428287d058712bdf7736b86456a19b29730bec50
      https://github.com/ehb54/ultrascan3/commit/428287d058712bdf7736b86456a19b29730bec50
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M utils/us_timer.h

  Log Message:
  -----------
  Add map include to us_timer.h


  Commit: b1e9456925a223045bd903ef52c4096e0e3675dc
      https://github.com/ehb54/ultrascan3/commit/b1e9456925a223045bd903ef52c4096e0e3675dc
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt

  Log Message:
  -----------
  Add OpenSSL applink condition for MSVC on Windows


  Commit: d9676faa3a7a6a92c56faa175bcd24c240a39b0d
      https://github.com/ehb54/ultrascan3/commit/d9676faa3a7a6a92c56faa175bcd24c240a39b0d
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge pull request #389 from ehb54/lukas/qt6-msvc

CMake Qt6 windows compile MSVC


  Commit: 5c16c03541cbbc99e4d1d5e6304244b7c5cd261d
      https://github.com/ehb54/ultrascan3/commit/5c16c03541cbbc99e4d1d5e6304244b7c5cd261d
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


Compare: https://github.com/ehb54/ultrascan3/compare/73d3d9961c36...5c16c03541cb

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From noreply at github.com  Sat Mar 14 00:31:47 2026
From: noreply at github.com (Lukas Dobler)
Date: Fri, 13 Mar 2026 23:31:47 -0700
Subject: [us-commits] [ehb54/ultrascan3] 8fbf53: Include OpenSSL applink for
 MSVC on Windows
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_edit_scan_exclude_click/a54f8e-ffaae2@github.com>

  Branch: refs/heads/lukas/us_edit_scan_exclude_click
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 8fbf539a26017728861e732dc1d18eb23eb5767b
      https://github.com/ehb54/ultrascan3/commit/8fbf539a26017728861e732dc1d18eb23eb5767b
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt

  Log Message:
  -----------
  Include OpenSSL applink for MSVC on Windows

Add OpenSSL applink shim for MSVC on Windows.


  Commit: 062c3d2366cc1939df31abf0a90ee9aa81093ffe
      https://github.com/ehb54/ultrascan3/commit/062c3d2366cc1939df31abf0a90ee9aa81093ffe
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M utils/us_timer.h

  Log Message:
  -----------
  Replace 'using namespace std' with std:: in us_timer.h

Prevent windows specific type definition conflicts caused by using namespace std;


  Commit: d285dea10ab7bcc93c14b4f74e336121a728f25a
      https://github.com/ehb54/ultrascan3/commit/d285dea10ab7bcc93c14b4f74e336121a728f25a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M vcpkg.json

  Log Message:
  -----------
  Update builtin-baseline version in vcpkg.json


  Commit: 2528e2d95ef721c90585880700173e01e85eaa41
      https://github.com/ehb54/ultrascan3/commit/2528e2d95ef721c90585880700173e01e85eaa41
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  Enhance CMakeLists for Qt6 post-build handling

Added post-build commands for Qt6 integration in Debug and Release modes.


  Commit: 52e46a6c204f209f206de1b17187485510b50872
      https://github.com/ehb54/ultrascan3/commit/52e46a6c204f209f206de1b17187485510b50872
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  Refactor post-build commands for Qt6 on Windows


  Commit: 428287d058712bdf7736b86456a19b29730bec50
      https://github.com/ehb54/ultrascan3/commit/428287d058712bdf7736b86456a19b29730bec50
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M utils/us_timer.h

  Log Message:
  -----------
  Add map include to us_timer.h


  Commit: b1e9456925a223045bd903ef52c4096e0e3675dc
      https://github.com/ehb54/ultrascan3/commit/b1e9456925a223045bd903ef52c4096e0e3675dc
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt

  Log Message:
  -----------
  Add OpenSSL applink condition for MSVC on Windows


  Commit: d9676faa3a7a6a92c56faa175bcd24c240a39b0d
      https://github.com/ehb54/ultrascan3/commit/d9676faa3a7a6a92c56faa175bcd24c240a39b0d
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge pull request #389 from ehb54/lukas/qt6-msvc

CMake Qt6 windows compile MSVC


  Commit: ffaae2039c0f2f0337ba9cde3e4667ade9f04c5c
      https://github.com/ehb54/ultrascan3/commit/ffaae2039c0f2f0337ba9cde3e4667ade9f04c5c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


Compare: https://github.com/ehb54/ultrascan3/compare/a54f8e2bc39c...ffaae2039c0f

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From noreply at github.com  Sat Mar 14 00:54:41 2026
From: noreply at github.com (alexsav815)
Date: Fri, 13 Mar 2026 23:54:41 -0700
Subject: [us-commits] [ehb54/ultrascan3] 5d9bc4: [4]GMP: Report -- test
 inclusion of the replica gr...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue785/cee063-5d9bc4@github.com>

  Branch: refs/heads/alexey-dev-issue785
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 5d9bc472d7f67b7cc2de87cfa943d8db9b3bc1c5
      https://github.com/ehb54/ultrascan3/commit/5d9bc472d7f67b7cc2de87cfa943d8db9b3bc1c5
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [4]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...



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From noreply at github.com  Sat Mar 14 04:39:06 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 14 Mar 2026 03:39:06 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_ddist_combine_all_checkbox/000000-d9676f@github.com>

  Branch: refs/heads/lukas/us_ddist_combine_all_checkbox
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Sat Mar 14 04:40:58 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 14 Mar 2026 03:40:58 -0700
Subject: [us-commits] [ehb54/ultrascan3] f403e0: Fix methodChanged to
 suppress signal and reset che...
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_ddist_combine_all_checkbox/d9676f-f403e0@github.com>

  Branch: refs/heads/lukas/us_ddist_combine_all_checkbox
  Home:   https://github.com/ehb54/ultrascan3
  Commit: f403e0ca772e609f1f064e09815e424e676e96ba
      https://github.com/ehb54/ultrascan3/commit/f403e0ca772e609f1f064e09815e424e676e96ba
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Fix methodChanged to suppress signal and reset checkboxes



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From noreply at github.com  Sat Mar 14 05:21:29 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 14 Mar 2026 04:21:29 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_mwl_spectra_3dplot_reversey/000000-d9676f@github.com>

  Branch: refs/heads/lukas/us_mwl_spectra_3dplot_reversey
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Sat Mar 14 05:37:08 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 14 Mar 2026 04:37:08 -0700
Subject: [us-commits] [ehb54/ultrascan3] 4c67ee: Remove redundant assignment
 to tdata
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_mwl_spectra_3dplot_reversey/d9676f-4c67ee@github.com>

  Branch: refs/heads/lukas/us_mwl_spectra_3dplot_reversey
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 4c67ee8e4cb27a2a60a41177608c3cf2565db76a
      https://github.com/ehb54/ultrascan3/commit/4c67ee8e4cb27a2a60a41177608c3cf2565db76a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Remove redundant assignment to tdata

Prevent memory corruption



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From noreply at github.com  Sat Mar 14 05:53:05 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 14 Mar 2026 04:53:05 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_analyte_protein_vbar_no_sequence/000000-d9676f@github.com>

  Branch: refs/heads/lukas/us_analyte_protein_vbar_no_sequence
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Sat Mar 14 05:54:35 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 14 Mar 2026 04:54:35 -0700
Subject: [us-commits] [ehb54/ultrascan3] 6437b9: Update condition for vbar20
 comparison
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_analyte_protein_vbar_no_sequence/d9676f-6437b9@github.com>

  Branch: refs/heads/lukas/us_analyte_protein_vbar_no_sequence
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 6437b90d6e57f06e5aafbea01753415627877e6b
      https://github.com/ehb54/ultrascan3/commit/6437b90d6e57f06e5aafbea01753415627877e6b
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp

  Log Message:
  -----------
  Update condition for vbar20 comparison



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From noreply at github.com  Sat Mar 14 06:19:15 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 14 Mar 2026 05:19:15 -0700
Subject: [us-commits] [ehb54/ultrascan3] 4c73a0: Fix typo in comment and
 streamline methodChanged
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_ddist_combine_all_checkbox/f403e0-4c73a0@github.com>

  Branch: refs/heads/lukas/us_ddist_combine_all_checkbox
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 4c73a0c1ae974bfad85180a15588c4203f772bae
      https://github.com/ehb54/ultrascan3/commit/4c73a0c1ae974bfad85180a15588c4203f772bae
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Fix typo in comment and streamline methodChanged



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From noreply at github.com  Sat Mar 14 08:55:07 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 14 Mar 2026 07:55:07 -0700
Subject: [us-commits] [ehb54/ultrascan3] 4c67ee: Remove redundant assignment
 to tdata
Message-ID: <ehb54/ultrascan3/push/refs/heads/main/d9676f-24cd6b@github.com>

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 4c67ee8e4cb27a2a60a41177608c3cf2565db76a
      https://github.com/ehb54/ultrascan3/commit/4c67ee8e4cb27a2a60a41177608c3cf2565db76a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Remove redundant assignment to tdata

Prevent memory corruption


  Commit: 24cd6bc5d78c14e84c05915d5b043c7628d0c084
      https://github.com/ehb54/ultrascan3/commit/24cd6bc5d78c14e84c05915d5b043c7628d0c084
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge pull request #391 from ehb54/lukas/us_mwl_spectra_3dplot_reversey

Remove redundant assignment to tdata


Compare: https://github.com/ehb54/ultrascan3/compare/d9676faa3a7a...24cd6bc5d78c

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From noreply at github.com  Sat Mar 14 08:55:14 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 14 Mar 2026 07:55:14 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_mwl_spectra_3dplot_reversey/4c67ee-000000@github.com>

  Branch: refs/heads/lukas/us_mwl_spectra_3dplot_reversey
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Sat Mar 14 08:55:35 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 14 Mar 2026 07:55:35 -0700
Subject: [us-commits] [ehb54/ultrascan3] 4c67ee: Remove redundant assignment
 to tdata
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_analyte_protein_vbar_no_sequence/6437b9-cd22d1@github.com>

  Branch: refs/heads/lukas/us_analyte_protein_vbar_no_sequence
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 4c67ee8e4cb27a2a60a41177608c3cf2565db76a
      https://github.com/ehb54/ultrascan3/commit/4c67ee8e4cb27a2a60a41177608c3cf2565db76a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Remove redundant assignment to tdata

Prevent memory corruption


  Commit: 24cd6bc5d78c14e84c05915d5b043c7628d0c084
      https://github.com/ehb54/ultrascan3/commit/24cd6bc5d78c14e84c05915d5b043c7628d0c084
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge pull request #391 from ehb54/lukas/us_mwl_spectra_3dplot_reversey

Remove redundant assignment to tdata


  Commit: cd22d118497ba373e73cde824f09464646c78f6e
      https://github.com/ehb54/ultrascan3/commit/cd22d118497ba373e73cde824f09464646c78f6e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_analyte_protein_vbar_no_sequence


Compare: https://github.com/ehb54/ultrascan3/compare/6437b90d6e57...cd22d118497b

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From noreply at github.com  Sat Mar 14 11:32:06 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 14 Mar 2026 10:32:06 -0700
Subject: [us-commits] [ehb54/ultrascan3] 6437b9: Update condition for vbar20
 comparison
Message-ID: <ehb54/ultrascan3/push/refs/heads/main/24cd6b-a92e13@github.com>

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 6437b90d6e57f06e5aafbea01753415627877e6b
      https://github.com/ehb54/ultrascan3/commit/6437b90d6e57f06e5aafbea01753415627877e6b
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp

  Log Message:
  -----------
  Update condition for vbar20 comparison


  Commit: cd22d118497ba373e73cde824f09464646c78f6e
      https://github.com/ehb54/ultrascan3/commit/cd22d118497ba373e73cde824f09464646c78f6e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_analyte_protein_vbar_no_sequence


  Commit: a92e13702d0a02ed4fddd7be57df0c9ec134c449
      https://github.com/ehb54/ultrascan3/commit/a92e13702d0a02ed4fddd7be57df0c9ec134c449
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp

  Log Message:
  -----------
  Merge pull request #392 from ehb54/lukas/us_analyte_protein_vbar_no_sequence

Update condition for vbar20 comparison


Compare: https://github.com/ehb54/ultrascan3/compare/24cd6bc5d78c...a92e13702d0a

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From noreply at github.com  Sat Mar 14 11:32:11 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 14 Mar 2026 10:32:11 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_analyte_protein_vbar_no_sequence/cd22d1-000000@github.com>

  Branch: refs/heads/lukas/us_analyte_protein_vbar_no_sequence
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Sat Mar 14 11:32:34 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 14 Mar 2026 10:32:34 -0700
Subject: [us-commits] [ehb54/ultrascan3] 4c67ee: Remove redundant assignment
 to tdata
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_ddist_combine_all_checkbox/4c73a0-648e2c@github.com>

  Branch: refs/heads/lukas/us_ddist_combine_all_checkbox
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 4c67ee8e4cb27a2a60a41177608c3cf2565db76a
      https://github.com/ehb54/ultrascan3/commit/4c67ee8e4cb27a2a60a41177608c3cf2565db76a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Remove redundant assignment to tdata

Prevent memory corruption


  Commit: 6437b90d6e57f06e5aafbea01753415627877e6b
      https://github.com/ehb54/ultrascan3/commit/6437b90d6e57f06e5aafbea01753415627877e6b
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp

  Log Message:
  -----------
  Update condition for vbar20 comparison


  Commit: 24cd6bc5d78c14e84c05915d5b043c7628d0c084
      https://github.com/ehb54/ultrascan3/commit/24cd6bc5d78c14e84c05915d5b043c7628d0c084
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge pull request #391 from ehb54/lukas/us_mwl_spectra_3dplot_reversey

Remove redundant assignment to tdata


  Commit: cd22d118497ba373e73cde824f09464646c78f6e
      https://github.com/ehb54/ultrascan3/commit/cd22d118497ba373e73cde824f09464646c78f6e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_analyte_protein_vbar_no_sequence


  Commit: a92e13702d0a02ed4fddd7be57df0c9ec134c449
      https://github.com/ehb54/ultrascan3/commit/a92e13702d0a02ed4fddd7be57df0c9ec134c449
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp

  Log Message:
  -----------
  Merge pull request #392 from ehb54/lukas/us_analyte_protein_vbar_no_sequence

Update condition for vbar20 comparison


  Commit: 648e2c616df93b8cb3f16672c3315e44e99a1cdd
      https://github.com/ehb54/ultrascan3/commit/648e2c616df93b8cb3f16672c3315e44e99a1cdd
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_ddist_combine_all_checkbox


Compare: https://github.com/ehb54/ultrascan3/compare/4c73a0c1ae97...648e2c616df9

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From noreply at github.com  Sat Mar 14 11:32:47 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 14 Mar 2026 10:32:47 -0700
Subject: [us-commits] [ehb54/ultrascan3] 4c67ee: Remove redundant assignment
 to tdata
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_edit_scan_exclude_click/ffaae2-524fb7@github.com>

  Branch: refs/heads/lukas/us_edit_scan_exclude_click
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 4c67ee8e4cb27a2a60a41177608c3cf2565db76a
      https://github.com/ehb54/ultrascan3/commit/4c67ee8e4cb27a2a60a41177608c3cf2565db76a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Remove redundant assignment to tdata

Prevent memory corruption


  Commit: 6437b90d6e57f06e5aafbea01753415627877e6b
      https://github.com/ehb54/ultrascan3/commit/6437b90d6e57f06e5aafbea01753415627877e6b
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp

  Log Message:
  -----------
  Update condition for vbar20 comparison


  Commit: 24cd6bc5d78c14e84c05915d5b043c7628d0c084
      https://github.com/ehb54/ultrascan3/commit/24cd6bc5d78c14e84c05915d5b043c7628d0c084
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge pull request #391 from ehb54/lukas/us_mwl_spectra_3dplot_reversey

Remove redundant assignment to tdata


  Commit: cd22d118497ba373e73cde824f09464646c78f6e
      https://github.com/ehb54/ultrascan3/commit/cd22d118497ba373e73cde824f09464646c78f6e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_analyte_protein_vbar_no_sequence


  Commit: a92e13702d0a02ed4fddd7be57df0c9ec134c449
      https://github.com/ehb54/ultrascan3/commit/a92e13702d0a02ed4fddd7be57df0c9ec134c449
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp

  Log Message:
  -----------
  Merge pull request #392 from ehb54/lukas/us_analyte_protein_vbar_no_sequence

Update condition for vbar20 comparison


  Commit: 524fb756825b453194c34611c2ce7624e62f7f53
      https://github.com/ehb54/ultrascan3/commit/524fb756825b453194c34611c2ce7624e62f7f53
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


Compare: https://github.com/ehb54/ultrascan3/compare/ffaae2039c0f...524fb756825b

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From noreply at github.com  Sat Mar 14 11:33:00 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 14 Mar 2026 10:33:00 -0700
Subject: [us-commits] [ehb54/ultrascan3] 4c67ee: Remove redundant assignment
 to tdata
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/masterpassword_change/5c16c0-45a569@github.com>

  Branch: refs/heads/lukas/masterpassword_change
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 4c67ee8e4cb27a2a60a41177608c3cf2565db76a
      https://github.com/ehb54/ultrascan3/commit/4c67ee8e4cb27a2a60a41177608c3cf2565db76a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Remove redundant assignment to tdata

Prevent memory corruption


  Commit: 6437b90d6e57f06e5aafbea01753415627877e6b
      https://github.com/ehb54/ultrascan3/commit/6437b90d6e57f06e5aafbea01753415627877e6b
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp

  Log Message:
  -----------
  Update condition for vbar20 comparison


  Commit: 24cd6bc5d78c14e84c05915d5b043c7628d0c084
      https://github.com/ehb54/ultrascan3/commit/24cd6bc5d78c14e84c05915d5b043c7628d0c084
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge pull request #391 from ehb54/lukas/us_mwl_spectra_3dplot_reversey

Remove redundant assignment to tdata


  Commit: cd22d118497ba373e73cde824f09464646c78f6e
      https://github.com/ehb54/ultrascan3/commit/cd22d118497ba373e73cde824f09464646c78f6e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_analyte_protein_vbar_no_sequence


  Commit: a92e13702d0a02ed4fddd7be57df0c9ec134c449
      https://github.com/ehb54/ultrascan3/commit/a92e13702d0a02ed4fddd7be57df0c9ec134c449
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp

  Log Message:
  -----------
  Merge pull request #392 from ehb54/lukas/us_analyte_protein_vbar_no_sequence

Update condition for vbar20 comparison


  Commit: 45a5699260fb89e53971aee6bbf0b5f13d1b40fa
      https://github.com/ehb54/ultrascan3/commit/45a5699260fb89e53971aee6bbf0b5f13d1b40fa
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


Compare: https://github.com/ehb54/ultrascan3/compare/5c16c03541cb...45a5699260fb

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From noreply at github.com  Sat Mar 14 16:06:07 2026
From: noreply at github.com (aaron-auc)
Date: Sat, 14 Mar 2026 15:06:07 -0700
Subject: [us-commits] [ehb54/ultrascan3] 8fbf53: Include OpenSSL applink for
 MSVC on Windows
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/82349a-8a2d98@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 8fbf539a26017728861e732dc1d18eb23eb5767b
      https://github.com/ehb54/ultrascan3/commit/8fbf539a26017728861e732dc1d18eb23eb5767b
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt

  Log Message:
  -----------
  Include OpenSSL applink for MSVC on Windows

Add OpenSSL applink shim for MSVC on Windows.


  Commit: 062c3d2366cc1939df31abf0a90ee9aa81093ffe
      https://github.com/ehb54/ultrascan3/commit/062c3d2366cc1939df31abf0a90ee9aa81093ffe
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M utils/us_timer.h

  Log Message:
  -----------
  Replace 'using namespace std' with std:: in us_timer.h

Prevent windows specific type definition conflicts caused by using namespace std;


  Commit: d285dea10ab7bcc93c14b4f74e336121a728f25a
      https://github.com/ehb54/ultrascan3/commit/d285dea10ab7bcc93c14b4f74e336121a728f25a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M vcpkg.json

  Log Message:
  -----------
  Update builtin-baseline version in vcpkg.json


  Commit: 2528e2d95ef721c90585880700173e01e85eaa41
      https://github.com/ehb54/ultrascan3/commit/2528e2d95ef721c90585880700173e01e85eaa41
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  Enhance CMakeLists for Qt6 post-build handling

Added post-build commands for Qt6 integration in Debug and Release modes.


  Commit: 52e46a6c204f209f206de1b17187485510b50872
      https://github.com/ehb54/ultrascan3/commit/52e46a6c204f209f206de1b17187485510b50872
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  Refactor post-build commands for Qt6 on Windows


  Commit: 428287d058712bdf7736b86456a19b29730bec50
      https://github.com/ehb54/ultrascan3/commit/428287d058712bdf7736b86456a19b29730bec50
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M utils/us_timer.h

  Log Message:
  -----------
  Add map include to us_timer.h


  Commit: b1e9456925a223045bd903ef52c4096e0e3675dc
      https://github.com/ehb54/ultrascan3/commit/b1e9456925a223045bd903ef52c4096e0e3675dc
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt

  Log Message:
  -----------
  Add OpenSSL applink condition for MSVC on Windows


  Commit: d9676faa3a7a6a92c56faa175bcd24c240a39b0d
      https://github.com/ehb54/ultrascan3/commit/d9676faa3a7a6a92c56faa175bcd24c240a39b0d
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge pull request #389 from ehb54/lukas/qt6-msvc

CMake Qt6 windows compile MSVC


  Commit: 4c67ee8e4cb27a2a60a41177608c3cf2565db76a
      https://github.com/ehb54/ultrascan3/commit/4c67ee8e4cb27a2a60a41177608c3cf2565db76a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Remove redundant assignment to tdata

Prevent memory corruption


  Commit: 6437b90d6e57f06e5aafbea01753415627877e6b
      https://github.com/ehb54/ultrascan3/commit/6437b90d6e57f06e5aafbea01753415627877e6b
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp

  Log Message:
  -----------
  Update condition for vbar20 comparison


  Commit: 24cd6bc5d78c14e84c05915d5b043c7628d0c084
      https://github.com/ehb54/ultrascan3/commit/24cd6bc5d78c14e84c05915d5b043c7628d0c084
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge pull request #391 from ehb54/lukas/us_mwl_spectra_3dplot_reversey

Remove redundant assignment to tdata


  Commit: cd22d118497ba373e73cde824f09464646c78f6e
      https://github.com/ehb54/ultrascan3/commit/cd22d118497ba373e73cde824f09464646c78f6e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_analyte_protein_vbar_no_sequence


  Commit: a92e13702d0a02ed4fddd7be57df0c9ec134c449
      https://github.com/ehb54/ultrascan3/commit/a92e13702d0a02ed4fddd7be57df0c9ec134c449
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp

  Log Message:
  -----------
  Merge pull request #392 from ehb54/lukas/us_analyte_protein_vbar_no_sequence

Update condition for vbar20 comparison


  Commit: 8a2d982f8e8906a85bfe363487622d59a1ff361e
      https://github.com/ehb54/ultrascan3/commit/8a2d982f8e8906a85bfe363487622d59a1ff361e
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


Compare: https://github.com/ehb54/ultrascan3/compare/82349a161246...8a2d982f8e89

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From noreply at github.com  Sat Mar 14 16:59:48 2026
From: noreply at github.com (aaron-auc)
Date: Sat, 14 Mar 2026 15:59:48 -0700
Subject: [us-commits] [ehb54/ultrascan3] 6d361b: mod: clean after build set
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/8a2d98-6d361b@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 6d361b64fc8f314fe8399f028d2c79ef9d0e417b
      https://github.com/ehb54/ultrascan3/commit/6d361b64fc8f314fe8399f028d2c79ef9d0e417b
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: clean after build set



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From noreply at github.com  Sat Mar 14 17:19:39 2026
From: noreply at github.com (aaron-auc)
Date: Sat, 14 Mar 2026 16:19:39 -0700
Subject: [us-commits] [ehb54/ultrascan3] 5b81b9: fix: packaging
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/6d361b-5b81b9@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 5b81b9c41fc973670663047afba591d6edaa898c
      https://github.com/ehb54/ultrascan3/commit/5b81b9c41fc973670663047afba591d6edaa898c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinDeploy.cmake

  Log Message:
  -----------
  fix: packaging



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From noreply at github.com  Sat Mar 14 17:49:29 2026
From: noreply at github.com (aaron-auc)
Date: Sat, 14 Mar 2026 16:49:29 -0700
Subject: [us-commits] [ehb54/ultrascan3] 8fbf53: Include OpenSSL applink for
 MSVC on Windows
Message-ID: <ehb54/ultrascan3/push/refs/heads/ehb54-issue-670/e9f095-10e620@github.com>

  Branch: refs/heads/ehb54-issue-670
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 8fbf539a26017728861e732dc1d18eb23eb5767b
      https://github.com/ehb54/ultrascan3/commit/8fbf539a26017728861e732dc1d18eb23eb5767b
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt

  Log Message:
  -----------
  Include OpenSSL applink for MSVC on Windows

Add OpenSSL applink shim for MSVC on Windows.


  Commit: 062c3d2366cc1939df31abf0a90ee9aa81093ffe
      https://github.com/ehb54/ultrascan3/commit/062c3d2366cc1939df31abf0a90ee9aa81093ffe
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M utils/us_timer.h

  Log Message:
  -----------
  Replace 'using namespace std' with std:: in us_timer.h

Prevent windows specific type definition conflicts caused by using namespace std;


  Commit: d285dea10ab7bcc93c14b4f74e336121a728f25a
      https://github.com/ehb54/ultrascan3/commit/d285dea10ab7bcc93c14b4f74e336121a728f25a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M vcpkg.json

  Log Message:
  -----------
  Update builtin-baseline version in vcpkg.json


  Commit: 2528e2d95ef721c90585880700173e01e85eaa41
      https://github.com/ehb54/ultrascan3/commit/2528e2d95ef721c90585880700173e01e85eaa41
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  Enhance CMakeLists for Qt6 post-build handling

Added post-build commands for Qt6 integration in Debug and Release modes.


  Commit: 52e46a6c204f209f206de1b17187485510b50872
      https://github.com/ehb54/ultrascan3/commit/52e46a6c204f209f206de1b17187485510b50872
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  Refactor post-build commands for Qt6 on Windows


  Commit: 428287d058712bdf7736b86456a19b29730bec50
      https://github.com/ehb54/ultrascan3/commit/428287d058712bdf7736b86456a19b29730bec50
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M utils/us_timer.h

  Log Message:
  -----------
  Add map include to us_timer.h


  Commit: b1e9456925a223045bd903ef52c4096e0e3675dc
      https://github.com/ehb54/ultrascan3/commit/b1e9456925a223045bd903ef52c4096e0e3675dc
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt

  Log Message:
  -----------
  Add OpenSSL applink condition for MSVC on Windows


  Commit: d9676faa3a7a6a92c56faa175bcd24c240a39b0d
      https://github.com/ehb54/ultrascan3/commit/d9676faa3a7a6a92c56faa175bcd24c240a39b0d
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge pull request #389 from ehb54/lukas/qt6-msvc

CMake Qt6 windows compile MSVC


  Commit: 4c67ee8e4cb27a2a60a41177608c3cf2565db76a
      https://github.com/ehb54/ultrascan3/commit/4c67ee8e4cb27a2a60a41177608c3cf2565db76a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Remove redundant assignment to tdata

Prevent memory corruption


  Commit: 6437b90d6e57f06e5aafbea01753415627877e6b
      https://github.com/ehb54/ultrascan3/commit/6437b90d6e57f06e5aafbea01753415627877e6b
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp

  Log Message:
  -----------
  Update condition for vbar20 comparison


  Commit: 24cd6bc5d78c14e84c05915d5b043c7628d0c084
      https://github.com/ehb54/ultrascan3/commit/24cd6bc5d78c14e84c05915d5b043c7628d0c084
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge pull request #391 from ehb54/lukas/us_mwl_spectra_3dplot_reversey

Remove redundant assignment to tdata


  Commit: cd22d118497ba373e73cde824f09464646c78f6e
      https://github.com/ehb54/ultrascan3/commit/cd22d118497ba373e73cde824f09464646c78f6e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_analyte_protein_vbar_no_sequence


  Commit: a92e13702d0a02ed4fddd7be57df0c9ec134c449
      https://github.com/ehb54/ultrascan3/commit/a92e13702d0a02ed4fddd7be57df0c9ec134c449
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp

  Log Message:
  -----------
  Merge pull request #392 from ehb54/lukas/us_analyte_protein_vbar_no_sequence

Update condition for vbar20 comparison


  Commit: 10e620037c83dddc66d518ab28e33eb36c3e3c17
      https://github.com/ehb54/ultrascan3/commit/10e620037c83dddc66d518ab28e33eb36c3e3c17
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


Compare: https://github.com/ehb54/ultrascan3/compare/e9f0952dea5d...10e620037c83

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From noreply at github.com  Sun Mar 15 00:19:12 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 14 Mar 2026 23:19:12 -0700
Subject: [us-commits] [ehb54/ultrascan3] bc8f22: Refactor password
 re-encryption logic
Message-ID: <ehb54/ultrascan3/push/refs/heads/main/a92e13-07c6d8@github.com>

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/ultrascan3
  Commit: bc8f22c93dcad653e16c52717a9386d9a99c67c9
      https://github.com/ehb54/ultrascan3/commit/bc8f22c93dcad653e16c52717a9386d9a99c67c9
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Refactor password re-encryption logic


  Commit: 93b2e5a2535f0de5b6fe2b4384a60d509571f6d4
      https://github.com/ehb54/ultrascan3/commit/93b2e5a2535f0de5b6fe2b4384a60d509571f6d4
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Check for empty cipherHex and optimize database loop

Added a check for empty cipherHex before decryption and modified the database loop to use a reference.


  Commit: 466789a804273570c11c7cb44bf28924caa363df
      https://github.com/ehb54/ultrascan3/commit/466789a804273570c11c7cb44bf28924caa363df
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: 73d3d9961c360d61b70b25d54f762c7f7435325e
      https://github.com/ehb54/ultrascan3/commit/73d3d9961c360d61b70b25d54f762c7f7435325e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: 5c16c03541cbbc99e4d1d5e6304244b7c5cd261d
      https://github.com/ehb54/ultrascan3/commit/5c16c03541cbbc99e4d1d5e6304244b7c5cd261d
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: 45a5699260fb89e53971aee6bbf0b5f13d1b40fa
      https://github.com/ehb54/ultrascan3/commit/45a5699260fb89e53971aee6bbf0b5f13d1b40fa
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: 07c6d8042bd25e59ca20ca5bd16ed3b6ff8b321c
      https://github.com/ehb54/ultrascan3/commit/07c6d8042bd25e59ca20ca5bd16ed3b6ff8b321c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge pull request #385 from ehb54/lukas/masterpassword_change

Refactor password re-encryption logic


Compare: https://github.com/ehb54/ultrascan3/compare/a92e13702d0a...07c6d8042bd2

To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications

From noreply at github.com  Sun Mar 15 00:19:24 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 14 Mar 2026 23:19:24 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/masterpassword_change/45a569-000000@github.com>

  Branch: refs/heads/lukas/masterpassword_change
  Home:   https://github.com/ehb54/ultrascan3

To unsubscribe from these emails, change your notification settings at https://github.com/ehb54/ultrascan3/settings/notifications

From noreply at github.com  Sun Mar 15 00:20:08 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 14 Mar 2026 23:20:08 -0700
Subject: [us-commits] [ehb54/ultrascan3] bc8f22: Refactor password
 re-encryption logic
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_ddist_combine_all_checkbox/648e2c-ed3ecf@github.com>

  Branch: refs/heads/lukas/us_ddist_combine_all_checkbox
  Home:   https://github.com/ehb54/ultrascan3
  Commit: bc8f22c93dcad653e16c52717a9386d9a99c67c9
      https://github.com/ehb54/ultrascan3/commit/bc8f22c93dcad653e16c52717a9386d9a99c67c9
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Refactor password re-encryption logic


  Commit: 93b2e5a2535f0de5b6fe2b4384a60d509571f6d4
      https://github.com/ehb54/ultrascan3/commit/93b2e5a2535f0de5b6fe2b4384a60d509571f6d4
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Check for empty cipherHex and optimize database loop

Added a check for empty cipherHex before decryption and modified the database loop to use a reference.


  Commit: 466789a804273570c11c7cb44bf28924caa363df
      https://github.com/ehb54/ultrascan3/commit/466789a804273570c11c7cb44bf28924caa363df
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: 73d3d9961c360d61b70b25d54f762c7f7435325e
      https://github.com/ehb54/ultrascan3/commit/73d3d9961c360d61b70b25d54f762c7f7435325e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: 5c16c03541cbbc99e4d1d5e6304244b7c5cd261d
      https://github.com/ehb54/ultrascan3/commit/5c16c03541cbbc99e4d1d5e6304244b7c5cd261d
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: 45a5699260fb89e53971aee6bbf0b5f13d1b40fa
      https://github.com/ehb54/ultrascan3/commit/45a5699260fb89e53971aee6bbf0b5f13d1b40fa
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: 07c6d8042bd25e59ca20ca5bd16ed3b6ff8b321c
      https://github.com/ehb54/ultrascan3/commit/07c6d8042bd25e59ca20ca5bd16ed3b6ff8b321c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge pull request #385 from ehb54/lukas/masterpassword_change

Refactor password re-encryption logic


  Commit: ed3ecfca235f46d9da27159afb01288bbcb42cd4
      https://github.com/ehb54/ultrascan3/commit/ed3ecfca235f46d9da27159afb01288bbcb42cd4
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_ddist_combine_all_checkbox


Compare: https://github.com/ehb54/ultrascan3/compare/648e2c616df9...ed3ecfca235f

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From noreply at github.com  Sun Mar 15 00:20:23 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 14 Mar 2026 23:20:23 -0700
Subject: [us-commits] [ehb54/ultrascan3] bc8f22: Refactor password
 re-encryption logic
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_edit_scan_exclude_click/524fb7-3e5bea@github.com>

  Branch: refs/heads/lukas/us_edit_scan_exclude_click
  Home:   https://github.com/ehb54/ultrascan3
  Commit: bc8f22c93dcad653e16c52717a9386d9a99c67c9
      https://github.com/ehb54/ultrascan3/commit/bc8f22c93dcad653e16c52717a9386d9a99c67c9
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Refactor password re-encryption logic


  Commit: 93b2e5a2535f0de5b6fe2b4384a60d509571f6d4
      https://github.com/ehb54/ultrascan3/commit/93b2e5a2535f0de5b6fe2b4384a60d509571f6d4
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Check for empty cipherHex and optimize database loop

Added a check for empty cipherHex before decryption and modified the database loop to use a reference.


  Commit: 466789a804273570c11c7cb44bf28924caa363df
      https://github.com/ehb54/ultrascan3/commit/466789a804273570c11c7cb44bf28924caa363df
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: 73d3d9961c360d61b70b25d54f762c7f7435325e
      https://github.com/ehb54/ultrascan3/commit/73d3d9961c360d61b70b25d54f762c7f7435325e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: 5c16c03541cbbc99e4d1d5e6304244b7c5cd261d
      https://github.com/ehb54/ultrascan3/commit/5c16c03541cbbc99e4d1d5e6304244b7c5cd261d
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: 45a5699260fb89e53971aee6bbf0b5f13d1b40fa
      https://github.com/ehb54/ultrascan3/commit/45a5699260fb89e53971aee6bbf0b5f13d1b40fa
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: 07c6d8042bd25e59ca20ca5bd16ed3b6ff8b321c
      https://github.com/ehb54/ultrascan3/commit/07c6d8042bd25e59ca20ca5bd16ed3b6ff8b321c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge pull request #385 from ehb54/lukas/masterpassword_change

Refactor password re-encryption logic


  Commit: 3e5bea2d6f8973b1443f2db3438bbbcfe128378f
      https://github.com/ehb54/ultrascan3/commit/3e5bea2d6f8973b1443f2db3438bbbcfe128378f
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


Compare: https://github.com/ehb54/ultrascan3/compare/524fb756825b...3e5bea2d6f89

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From noreply at github.com  Sun Mar 15 12:57:15 2026
From: noreply at github.com (aaron-auc)
Date: Sun, 15 Mar 2026 11:57:15 -0700
Subject: [us-commits] [ehb54/ultrascan3] bc8f22: Refactor password
 re-encryption logic
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/5b81b9-3afad4@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: bc8f22c93dcad653e16c52717a9386d9a99c67c9
      https://github.com/ehb54/ultrascan3/commit/bc8f22c93dcad653e16c52717a9386d9a99c67c9
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Refactor password re-encryption logic


  Commit: 93b2e5a2535f0de5b6fe2b4384a60d509571f6d4
      https://github.com/ehb54/ultrascan3/commit/93b2e5a2535f0de5b6fe2b4384a60d509571f6d4
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Check for empty cipherHex and optimize database loop

Added a check for empty cipherHex before decryption and modified the database loop to use a reference.


  Commit: 466789a804273570c11c7cb44bf28924caa363df
      https://github.com/ehb54/ultrascan3/commit/466789a804273570c11c7cb44bf28924caa363df
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: 73d3d9961c360d61b70b25d54f762c7f7435325e
      https://github.com/ehb54/ultrascan3/commit/73d3d9961c360d61b70b25d54f762c7f7435325e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: 5c16c03541cbbc99e4d1d5e6304244b7c5cd261d
      https://github.com/ehb54/ultrascan3/commit/5c16c03541cbbc99e4d1d5e6304244b7c5cd261d
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: 45a5699260fb89e53971aee6bbf0b5f13d1b40fa
      https://github.com/ehb54/ultrascan3/commit/45a5699260fb89e53971aee6bbf0b5f13d1b40fa
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: 07c6d8042bd25e59ca20ca5bd16ed3b6ff8b321c
      https://github.com/ehb54/ultrascan3/commit/07c6d8042bd25e59ca20ca5bd16ed3b6ff8b321c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge pull request #385 from ehb54/lukas/masterpassword_change

Refactor password re-encryption logic


  Commit: 3afad49842a3c53daabf741428b683cb8e86837c
      https://github.com/ehb54/ultrascan3/commit/3afad49842a3c53daabf741428b683cb8e86837c
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


Compare: https://github.com/ehb54/ultrascan3/compare/5b81b9c41fc9...3afad49842a3

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From noreply at github.com  Sun Mar 15 18:14:47 2026
From: noreply at github.com (aaron-auc)
Date: Sun, 15 Mar 2026 17:14:47 -0700
Subject: [us-commits] [ehb54/ultrascan3] afdf12: test remove qttools overlay
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/3afad4-691c21@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: afdf12344c5555d4130fa310bf352f2c27bbdadc
      https://github.com/ehb54/ultrascan3/commit/afdf12344c5555d4130fa310bf352f2c27bbdadc
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    A buildsys/vcpkg/overlay-ports/qttools.disable/devendor-litehtml.patch
    A buildsys/vcpkg/overlay-ports/qttools.disable/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools.disable/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qttools.disable/windeployqt.debug.bat
    R buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
    R buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
    R buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
    R buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat

  Log Message:
  -----------
  test remove qttools overlay


  Commit: 691c2112f822e5f82f6f153dbb8d568663367a2c
      https://github.com/ehb54/ultrascan3/commit/691c2112f822e5f82f6f153dbb8d568663367a2c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2


Compare: https://github.com/ehb54/ultrascan3/compare/3afad49842a3...691c2112f822

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From noreply at github.com  Mon Mar 16 04:30:29 2026
From: noreply at github.com (Lukas Dobler)
Date: Mon, 16 Mar 2026 03:30:29 -0700
Subject: [us-commits] [ehb54/ultrascan3] 447c06: Refactor `US_Zoomer` and
 `US_DoubleClickEventFilte...
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_edit_scan_exclude_click/3e5bea-447c06@github.com>

  Branch: refs/heads/lukas/us_edit_scan_exclude_click
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 447c06a32ef5ade7850e1391500673c408a9c5e4
      https://github.com/ehb54/ultrascan3/commit/447c06a32ef5ade7850e1391500673c408a9c5e4
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h

  Log Message:
  -----------
  Refactor `US_Zoomer` and `US_DoubleClickEventFilter`: enhance zoom base initialization, update rubber band/tracker pen settings, and improve double-click handling for axes and curves.



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From noreply at github.com  Mon Mar 16 13:54:10 2026
From: noreply at github.com (alexsav815)
Date: Mon, 16 Mar 2026 12:54:10 -0700
Subject: [us-commits] [ehb54/ultrascan3] a73d1f: [5]GMP: Report -- test
 inclusion of the replica gr...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue785/5d9bc4-a73d1f@github.com>

  Branch: refs/heads/alexey-dev-issue785
  Home:   https://github.com/ehb54/ultrascan3
  Commit: a73d1f0d1b712c4345cbd63219466ef87ccabfdb
      https://github.com/ehb54/ultrascan3/commit/a73d1f0d1b712c4345cbd63219466ef87ccabfdb
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [5]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...



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From noreply at github.com  Mon Mar 16 14:21:08 2026
From: noreply at github.com (alexsav815)
Date: Mon, 16 Mar 2026 13:21:08 -0700
Subject: [us-commits] [ehb54/ultrascan3] 28dafe: [6]GMP: Report -- test
 inclusion of the replica gr...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue785/a73d1f-28dafe@github.com>

  Branch: refs/heads/alexey-dev-issue785
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 28dafe4f6fe91d2a19d25a13dca2a9700c8524c1
      https://github.com/ehb54/ultrascan3/commit/28dafe4f6fe91d2a19d25a13dca2a9700c8524c1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  [6]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...



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From noreply at github.com  Mon Mar 16 14:31:08 2026
From: noreply at github.com (alexsav815)
Date: Mon, 16 Mar 2026 13:31:08 -0700
Subject: [us-commits] [ehb54/ultrascan3] 88e526: [6a]GMP: Report -- test
 inclusion of the replica g...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue785/28dafe-88e526@github.com>

  Branch: refs/heads/alexey-dev-issue785
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 88e5262aa244a552236f70eb1b00274e245d2f90
      https://github.com/ehb54/ultrascan3/commit/88e5262aa244a552236f70eb1b00274e245d2f90
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [6a]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...ush



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From noreply at github.com  Mon Mar 16 14:41:41 2026
From: noreply at github.com (alexsav815)
Date: Mon, 16 Mar 2026 13:41:41 -0700
Subject: [us-commits] [ehb54/ultrascan3] 5e19ef: [6b]GMP: Report -- test
 inclusion of the replica g...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue785/88e526-5e19ef@github.com>

  Branch: refs/heads/alexey-dev-issue785
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 5e19ef3b84e9f0542544c16ad99f1909133b6197
      https://github.com/ehb54/ultrascan3/commit/5e19ef3b84e9f0542544c16ad99f1909133b6197
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [6b]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...ush



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From noreply at github.com  Mon Mar 16 14:47:34 2026
From: noreply at github.com (alexsav815)
Date: Mon, 16 Mar 2026 13:47:34 -0700
Subject: [us-commits] [ehb54/ultrascan3] bc8f22: Refactor password
 re-encryption logic
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue785/5e19ef-cfd2bf@github.com>

  Branch: refs/heads/alexey-dev-issue785
  Home:   https://github.com/ehb54/ultrascan3
  Commit: bc8f22c93dcad653e16c52717a9386d9a99c67c9
      https://github.com/ehb54/ultrascan3/commit/bc8f22c93dcad653e16c52717a9386d9a99c67c9
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Refactor password re-encryption logic


  Commit: 93b2e5a2535f0de5b6fe2b4384a60d509571f6d4
      https://github.com/ehb54/ultrascan3/commit/93b2e5a2535f0de5b6fe2b4384a60d509571f6d4
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Check for empty cipherHex and optimize database loop

Added a check for empty cipherHex before decryption and modified the database loop to use a reference.


  Commit: 466789a804273570c11c7cb44bf28924caa363df
      https://github.com/ehb54/ultrascan3/commit/466789a804273570c11c7cb44bf28924caa363df
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: 73d3d9961c360d61b70b25d54f762c7f7435325e
      https://github.com/ehb54/ultrascan3/commit/73d3d9961c360d61b70b25d54f762c7f7435325e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: 8fbf539a26017728861e732dc1d18eb23eb5767b
      https://github.com/ehb54/ultrascan3/commit/8fbf539a26017728861e732dc1d18eb23eb5767b
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt

  Log Message:
  -----------
  Include OpenSSL applink for MSVC on Windows

Add OpenSSL applink shim for MSVC on Windows.


  Commit: 062c3d2366cc1939df31abf0a90ee9aa81093ffe
      https://github.com/ehb54/ultrascan3/commit/062c3d2366cc1939df31abf0a90ee9aa81093ffe
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M utils/us_timer.h

  Log Message:
  -----------
  Replace 'using namespace std' with std:: in us_timer.h

Prevent windows specific type definition conflicts caused by using namespace std;


  Commit: d285dea10ab7bcc93c14b4f74e336121a728f25a
      https://github.com/ehb54/ultrascan3/commit/d285dea10ab7bcc93c14b4f74e336121a728f25a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M vcpkg.json

  Log Message:
  -----------
  Update builtin-baseline version in vcpkg.json


  Commit: 2528e2d95ef721c90585880700173e01e85eaa41
      https://github.com/ehb54/ultrascan3/commit/2528e2d95ef721c90585880700173e01e85eaa41
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  Enhance CMakeLists for Qt6 post-build handling

Added post-build commands for Qt6 integration in Debug and Release modes.


  Commit: 52e46a6c204f209f206de1b17187485510b50872
      https://github.com/ehb54/ultrascan3/commit/52e46a6c204f209f206de1b17187485510b50872
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  Refactor post-build commands for Qt6 on Windows


  Commit: 428287d058712bdf7736b86456a19b29730bec50
      https://github.com/ehb54/ultrascan3/commit/428287d058712bdf7736b86456a19b29730bec50
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M utils/us_timer.h

  Log Message:
  -----------
  Add map include to us_timer.h


  Commit: b1e9456925a223045bd903ef52c4096e0e3675dc
      https://github.com/ehb54/ultrascan3/commit/b1e9456925a223045bd903ef52c4096e0e3675dc
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt

  Log Message:
  -----------
  Add OpenSSL applink condition for MSVC on Windows


  Commit: d9676faa3a7a6a92c56faa175bcd24c240a39b0d
      https://github.com/ehb54/ultrascan3/commit/d9676faa3a7a6a92c56faa175bcd24c240a39b0d
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge pull request #389 from ehb54/lukas/qt6-msvc

CMake Qt6 windows compile MSVC


  Commit: 5c16c03541cbbc99e4d1d5e6304244b7c5cd261d
      https://github.com/ehb54/ultrascan3/commit/5c16c03541cbbc99e4d1d5e6304244b7c5cd261d
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: 4c67ee8e4cb27a2a60a41177608c3cf2565db76a
      https://github.com/ehb54/ultrascan3/commit/4c67ee8e4cb27a2a60a41177608c3cf2565db76a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Remove redundant assignment to tdata

Prevent memory corruption


  Commit: 6437b90d6e57f06e5aafbea01753415627877e6b
      https://github.com/ehb54/ultrascan3/commit/6437b90d6e57f06e5aafbea01753415627877e6b
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp

  Log Message:
  -----------
  Update condition for vbar20 comparison


  Commit: 24cd6bc5d78c14e84c05915d5b043c7628d0c084
      https://github.com/ehb54/ultrascan3/commit/24cd6bc5d78c14e84c05915d5b043c7628d0c084
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge pull request #391 from ehb54/lukas/us_mwl_spectra_3dplot_reversey

Remove redundant assignment to tdata


  Commit: cd22d118497ba373e73cde824f09464646c78f6e
      https://github.com/ehb54/ultrascan3/commit/cd22d118497ba373e73cde824f09464646c78f6e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_analyte_protein_vbar_no_sequence


  Commit: a92e13702d0a02ed4fddd7be57df0c9ec134c449
      https://github.com/ehb54/ultrascan3/commit/a92e13702d0a02ed4fddd7be57df0c9ec134c449
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp

  Log Message:
  -----------
  Merge pull request #392 from ehb54/lukas/us_analyte_protein_vbar_no_sequence

Update condition for vbar20 comparison


  Commit: 45a5699260fb89e53971aee6bbf0b5f13d1b40fa
      https://github.com/ehb54/ultrascan3/commit/45a5699260fb89e53971aee6bbf0b5f13d1b40fa
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: 07c6d8042bd25e59ca20ca5bd16ed3b6ff8b321c
      https://github.com/ehb54/ultrascan3/commit/07c6d8042bd25e59ca20ca5bd16ed3b6ff8b321c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge pull request #385 from ehb54/lukas/masterpassword_change

Refactor password re-encryption logic


  Commit: cfd2bf22ab1f023d0f1bf0c3677f13218d99b4e3
      https://github.com/ehb54/ultrascan3/commit/cfd2bf22ab1f023d0f1bf0c3677f13218d99b4e3
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_config/us_admin.cpp
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge pull request #393 from ehb54/main

Merge main into alexey-dev-issue785


Compare: https://github.com/ehb54/ultrascan3/compare/5e19ef3b84e9...cfd2bf22ab1f

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From noreply at github.com  Mon Mar 16 17:07:15 2026
From: noreply at github.com (aaron-auc)
Date: Mon, 16 Mar 2026 16:07:15 -0700
Subject: [us-commits] [ehb54/ultrascan3] 5fbfc3: fix: restore patch for
 qt5-tools
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/691c21-5fbfc3@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 5fbfc3b610b9edaa535c2cdde484daba5a1f6d23
      https://github.com/ehb54/ultrascan3/commit/5fbfc3b610b9edaa535c2cdde484daba5a1f6d23
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinDeploy.cmake
    A buildsys/vcpkg/overlay-ports/qt5-tools/fix-pkgconfig-qt5uiplugin-not-found.patch
    A buildsys/vcpkg/overlay-ports/qt5-tools/fix-spawnvp-argv.patch
    A buildsys/vcpkg/overlay-ports/qt5-tools/libclang.patch
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    M buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    M scripts/bootstrap-windows.ps1
    M scripts/build.ps1

  Log Message:
  -----------
  fix: restore patch for qt5-tools



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From noreply at github.com  Mon Mar 16 18:24:32 2026
From: noreply at github.com (aaron-auc)
Date: Mon, 16 Mar 2026 17:24:32 -0700
Subject: [us-commits] [ehb54/ultrascan3] ee9314: fix: nasm check and add
 supporting dlls to install...
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/5fbfc3-ee9314@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: ee9314b8a10555d579148933ce5fb59dc77f25a5
      https://github.com/ehb54/ultrascan3/commit/ee9314b8a10555d579148933ce5fb59dc77f25a5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinDeploy.cmake
    M scripts/bootstrap-windows.ps1

  Log Message:
  -----------
  fix: nasm check and add supporting dlls to installation



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From noreply at github.com  Mon Mar 16 19:49:32 2026
From: noreply at github.com (aaron-auc)
Date: Mon, 16 Mar 2026 18:49:32 -0700
Subject: [us-commits] [ehb54/ultrascan3] f9860b: mod: check path length is
 too long on qt 5
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/ee9314-f9860b@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: f9860bd8d1ac6f5c5c4a4b0dd90e3cb7f09bd131
      https://github.com/ehb54/ultrascan3/commit/f9860bd8d1ac6f5c5c4a4b0dd90e3cb7f09bd131
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M scripts/build.ps1
    M vcpkg.json

  Log Message:
  -----------
  mod: check path length is too long on qt 5



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From noreply at github.com  Mon Mar 16 22:02:04 2026
From: noreply at github.com (aaron-auc)
Date: Mon, 16 Mar 2026 21:02:04 -0700
Subject: [us-commits] [ehb54/ultrascan3] 4365eb: del: remove unused overlay
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/f9860b-4365eb@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 4365eb02a1c29a38a42fe848da39deab69e67715
      https://github.com/ehb54/ultrascan3/commit/4365eb02a1c29a38a42fe848da39deab69e67715
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    R buildsys/vcpkg/overlay-ports/qttools.disable/devendor-litehtml.patch
    R buildsys/vcpkg/overlay-ports/qttools.disable/portfile.cmake
    R buildsys/vcpkg/overlay-ports/qttools.disable/vcpkg.json
    R buildsys/vcpkg/overlay-ports/qttools.disable/windeployqt.debug.bat

  Log Message:
  -----------
  del: remove unused overlay



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From noreply at github.com  Mon Mar 16 22:48:03 2026
From: noreply at github.com (Lukas Dobler)
Date: Mon, 16 Mar 2026 21:48:03 -0700
Subject: [us-commits] [ehb54/ultrascan3] f403e0: Fix methodChanged to
 suppress signal and reset che...
Message-ID: <ehb54/ultrascan3/push/refs/heads/main/07c6d8-c9f955@github.com>

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/ultrascan3
  Commit: f403e0ca772e609f1f064e09815e424e676e96ba
      https://github.com/ehb54/ultrascan3/commit/f403e0ca772e609f1f064e09815e424e676e96ba
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Fix methodChanged to suppress signal and reset checkboxes


  Commit: 4c73a0c1ae974bfad85180a15588c4203f772bae
      https://github.com/ehb54/ultrascan3/commit/4c73a0c1ae974bfad85180a15588c4203f772bae
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Fix typo in comment and streamline methodChanged


  Commit: 648e2c616df93b8cb3f16672c3315e44e99a1cdd
      https://github.com/ehb54/ultrascan3/commit/648e2c616df93b8cb3f16672c3315e44e99a1cdd
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_ddist_combine_all_checkbox


  Commit: ed3ecfca235f46d9da27159afb01288bbcb42cd4
      https://github.com/ehb54/ultrascan3/commit/ed3ecfca235f46d9da27159afb01288bbcb42cd4
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_ddist_combine_all_checkbox


  Commit: c9f9553d1be9cca2abdbef64d64daa2688c9b977
      https://github.com/ehb54/ultrascan3/commit/c9f9553d1be9cca2abdbef64d64daa2688c9b977
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Merge pull request #390 from ehb54/lukas/us_ddist_combine_all_checkbox

Change behavior of all button in combine discrete distributions


Compare: https://github.com/ehb54/ultrascan3/compare/07c6d8042bd2...c9f9553d1be9

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From noreply at github.com  Mon Mar 16 22:48:12 2026
From: noreply at github.com (Lukas Dobler)
Date: Mon, 16 Mar 2026 21:48:12 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_ddist_combine_all_checkbox/ed3ecf-000000@github.com>

  Branch: refs/heads/lukas/us_ddist_combine_all_checkbox
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Mon Mar 16 22:48:31 2026
From: noreply at github.com (Lukas Dobler)
Date: Mon, 16 Mar 2026 21:48:31 -0700
Subject: [us-commits] [ehb54/ultrascan3] f403e0: Fix methodChanged to
 suppress signal and reset che...
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_edit_scan_exclude_click/447c06-50ee53@github.com>

  Branch: refs/heads/lukas/us_edit_scan_exclude_click
  Home:   https://github.com/ehb54/ultrascan3
  Commit: f403e0ca772e609f1f064e09815e424e676e96ba
      https://github.com/ehb54/ultrascan3/commit/f403e0ca772e609f1f064e09815e424e676e96ba
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Fix methodChanged to suppress signal and reset checkboxes


  Commit: 4c73a0c1ae974bfad85180a15588c4203f772bae
      https://github.com/ehb54/ultrascan3/commit/4c73a0c1ae974bfad85180a15588c4203f772bae
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Fix typo in comment and streamline methodChanged


  Commit: 648e2c616df93b8cb3f16672c3315e44e99a1cdd
      https://github.com/ehb54/ultrascan3/commit/648e2c616df93b8cb3f16672c3315e44e99a1cdd
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_ddist_combine_all_checkbox


  Commit: ed3ecfca235f46d9da27159afb01288bbcb42cd4
      https://github.com/ehb54/ultrascan3/commit/ed3ecfca235f46d9da27159afb01288bbcb42cd4
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_ddist_combine_all_checkbox


  Commit: c9f9553d1be9cca2abdbef64d64daa2688c9b977
      https://github.com/ehb54/ultrascan3/commit/c9f9553d1be9cca2abdbef64d64daa2688c9b977
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Merge pull request #390 from ehb54/lukas/us_ddist_combine_all_checkbox

Change behavior of all button in combine discrete distributions


  Commit: 50ee53da3e470361bd6a9fa94454856cc21660a1
      https://github.com/ehb54/ultrascan3/commit/50ee53da3e470361bd6a9fa94454856cc21660a1
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


Compare: https://github.com/ehb54/ultrascan3/compare/447c06a32ef5...50ee53da3e47

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From noreply at github.com  Mon Mar 16 23:23:41 2026
From: noreply at github.com (Lukas Dobler)
Date: Mon, 16 Mar 2026 22:23:41 -0700
Subject: [us-commits] [ehb54/ultrascan3] 1dbeb0: Refactor `US_Plot`: enhance
 double-click interacti...
Message-ID: <ehb54/ultrascan3/push/refs/heads/main/c9f955-c6c251@github.com>

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 1dbeb030075307c5652d506be95a2186a0c22724
      https://github.com/ehb54/ultrascan3/commit/1dbeb030075307c5652d506be95a2186a0c22724
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h

  Log Message:
  -----------
  Refactor `US_Plot`: enhance double-click interactions, add zoom configuration, and improve curve/axis management with event filter.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 72c834e6d8fa6d6cd9d3b1d1eb90cc7410670c01
      https://github.com/ehb54/ultrascan3/commit/72c834e6d8fa6d6cd9d3b1d1eb90cc7410670c01
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  Add "Click Exclusion Mode" in `US_Edit` with hover tooltips and enhanced scan selection functionality.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: ced5c0cf9086f5a21a308bcb214f061a75e89aab
      https://github.com/ehb54/ultrascan3/commit/ced5c0cf9086f5a21a308bcb214f061a75e89aab
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  Add null pointer check for `plot->getZoomer()` in `US_Edit` to prevent potential crashes.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: b5607cb3d6296c0e48283cc6dd1a804c051dd8d9
      https://github.com/ehb54/ultrascan3/commit/b5607cb3d6296c0e48283cc6dd1a804c051dd8d9
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  Remove redundant state machine changes in "Click Exclusion Mode" toggle of `US_Edit`.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: d548b54d3bbac75ffbf270b99643e5cf26257968
      https://github.com/ehb54/ultrascan3/commit/d548b54d3bbac75ffbf270b99643e5cf26257968
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.h

  Log Message:
  -----------
  Initialize members in `CurveDistance` struct with default values to improve stability and prevent undefined behavior.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: f3e23f8189d66b9641b37fb2c54b38119d2ef2ec
      https://github.com/ehb54/ultrascan3/commit/f3e23f8189d66b9641b37fb2c54b38119d2ef2ec
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp

  Log Message:
  -----------
  Refactor `US_Plot`: add new double-click connections, refactor axis configuration, and enhance zoomer signal handling.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: d73cc2971816653d17d72f1785291c00b96b0c8b
      https://github.com/ehb54/ultrascan3/commit/d73cc2971816653d17d72f1785291c00b96b0c8b
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp

  Log Message:
  -----------
  Update `US_Plot::createZoomer` to adjust `US_Zoomer` constructor arguments for axis configuration.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: a54f8e2bc39c26f3e2f95dae43da15eb743e4d25
      https://github.com/ehb54/ultrascan3/commit/a54f8e2bc39c26f3e2f95dae43da15eb743e4d25
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: ffaae2039c0f2f0337ba9cde3e4667ade9f04c5c
      https://github.com/ehb54/ultrascan3/commit/ffaae2039c0f2f0337ba9cde3e4667ade9f04c5c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: 524fb756825b453194c34611c2ce7624e62f7f53
      https://github.com/ehb54/ultrascan3/commit/524fb756825b453194c34611c2ce7624e62f7f53
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: 3e5bea2d6f8973b1443f2db3438bbbcfe128378f
      https://github.com/ehb54/ultrascan3/commit/3e5bea2d6f8973b1443f2db3438bbbcfe128378f
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: 447c06a32ef5ade7850e1391500673c408a9c5e4
      https://github.com/ehb54/ultrascan3/commit/447c06a32ef5ade7850e1391500673c408a9c5e4
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h

  Log Message:
  -----------
  Refactor `US_Zoomer` and `US_DoubleClickEventFilter`: enhance zoom base initialization, update rubber band/tracker pen settings, and improve double-click handling for axes and curves.


  Commit: 50ee53da3e470361bd6a9fa94454856cc21660a1
      https://github.com/ehb54/ultrascan3/commit/50ee53da3e470361bd6a9fa94454856cc21660a1
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: c6c251770d12273ef8519ef12212ecaf90df9c8a
      https://github.com/ehb54/ultrascan3/commit/c6c251770d12273ef8519ef12212ecaf90df9c8a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  Merge pull request #388 from ehb54/lukas/us_edit_scan_exclude_click

Refactor US_Plot interactions and enhance US_Edit functionality


Compare: https://github.com/ehb54/ultrascan3/compare/c9f9553d1be9...c6c251770d12

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From noreply at github.com  Mon Mar 16 23:23:51 2026
From: noreply at github.com (Lukas Dobler)
Date: Mon, 16 Mar 2026 22:23:51 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_edit_scan_exclude_click/50ee53-000000@github.com>

  Branch: refs/heads/lukas/us_edit_scan_exclude_click
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Tue Mar 17 05:06:02 2026
From: noreply at github.com (Lukas Dobler)
Date: Tue, 17 Mar 2026 04:06:02 -0700
Subject: [us-commits] [ehb54/ultrascan3] ef6f3b: mod: icons remove border
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_fematch/3e04bd-a69519@github.com>

  Branch: refs/heads/lukas/us_fematch
  Home:   https://github.com/ehb54/ultrascan3
  Commit: ef6f3bd3f96408decfe78facbf37acadc5834997
      https://github.com/ehb54/ultrascan3/commit/ef6f3bd3f96408decfe78facbf37acadc5834997
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2025-12-18 (Thu, 18 Dec 2025)

  Changed paths:
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png

  Log Message:
  -----------
  mod: icons remove border


  Commit: d287d24ac45d15c14c50dffde79d3abcf44e1c47
      https://github.com/ehb54/ultrascan3/commit/d287d24ac45d15c14c50dffde79d3abcf44e1c47
  Author: Saeed <github.com/samo38>
  Date:   2026-02-06 (Fri, 06 Feb 2026)

  Changed paths:
    M gui/us_spectrodata.h

  Log Message:
  -----------
  us_spectrodata: add hydrodynamic radius to S_Solute


  Commit: 1a9eda0deabbf567b25ddd721c01232463c6d549
      https://github.com/ehb54/ultrascan3/commit/1a9eda0deabbf567b25ddd721c01232463c6d549
  Author: Saeed <github.com/samo38>
  Date:   2026-02-06 (Fri, 06 Feb 2026)

  Changed paths:
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h

  Log Message:
  -----------
  us_integral: replace SolParam with S_Solute


  Commit: da3fc554ce97a1be8cfe7b62337d78d92604161f
      https://github.com/ehb54/ultrascan3/commit/da3fc554ce97a1be8cfe7b62337d78d92604161f
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-08 (Sun, 08 Feb 2026)

  Changed paths:
    A test/utils/test_us_regex.cpp

  Log Message:
  -----------
  Add unit tests for regex pattern validation across multiple directories using Google Test.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: cb515698419c2bb2848d269cceca3d7868746844
      https://github.com/ehb54/ultrascan3/commit/cb515698419c2bb2848d269cceca3d7868746844
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-08 (Sun, 08 Feb 2026)

  Changed paths:
    M programs/us_astfem_sim/us_astfem_sim.cpp

  Log Message:
  -----------
  Remove unused QRegularExpression instance in `us_astfem_sim.cpp` for cleanup.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: b0ac1a3cb666e4f4b25c1365edc8d5c5e4f6bacf
      https://github.com/ehb54/ultrascan3/commit/b0ac1a3cb666e4f4b25c1365edc8d5c5e4f6bacf
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-08 (Sun, 08 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_proto_ranges.cpp

  Log Message:
  -----------
  Fix regex pattern

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 6576b55edf442a9f5bbf1a514fdf3c8b7d0aacb4
      https://github.com/ehb54/ultrascan3/commit/6576b55edf442a9f5bbf1a514fdf3c8b7d0aacb4
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-08 (Sun, 08 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  Fix regex pattern to escape hyphen in `us_experiment_gui_optima.cpp`.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 6e7d30e0ef299014a0c9cb9ef1946d1a47fb0a7c
      https://github.com/ehb54/ultrascan3/commit/6e7d30e0ef299014a0c9cb9ef1946d1a47fb0a7c
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-08 (Sun, 08 Feb 2026)

  Changed paths:
    M test/utils/test_us_regex.cpp

  Log Message:
  -----------
  Enhance regex validation test to handle multiple root directories.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 08cb8eff95cbb8854677c23f9a6feaf2cb8a3cf0
      https://github.com/ehb54/ultrascan3/commit/08cb8eff95cbb8854677c23f9a6feaf2cb8a3cf0
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-08 (Sun, 08 Feb 2026)

  Changed paths:
    M gui/us_model_loader.cpp

  Log Message:
  -----------
  Refactor `mflt1` handling in `us_model_loader.cpp` to improve readability and maintainability with explicit regex variable.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 5078a8d03fd2b3aa46a05080799be0a7160b8ebf
      https://github.com/ehb54/ultrascan3/commit/5078a8d03fd2b3aa46a05080799be0a7160b8ebf
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-08 (Sun, 08 Feb 2026)

  Changed paths:
    M CMakeLists.txt
    M test/utils/test_us_regex.cpp

  Log Message:
  -----------
  Improve regex patterns in `test_us_regex.cpp` by refining matching groups and simplify logic using `US3_SOURCE_DIR`.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 209a54e72c0504fe6f76815b7942f5a22fd234f0
      https://github.com/ehb54/ultrascan3/commit/209a54e72c0504fe6f76815b7942f5a22fd234f0
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-08 (Sun, 08 Feb 2026)

  Changed paths:
    M test/utils/test_us_regex.cpp

  Log Message:
  -----------
  Remove unused `#include <QDebug>` from `test_us_regex.cpp`.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 9242af2cd2230eee60f31dfeb847dc9f5e8d5f7f
      https://github.com/ehb54/ultrascan3/commit/9242af2cd2230eee60f31dfeb847dc9f5e8d5f7f
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-08 (Sun, 08 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_proto_ranges.cpp

  Log Message:
  -----------
  Improve regex pattern in `us_proto_ranges.cpp` by adding anchors to validate the entire input string.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 265038699620b8b1a90c53f84efb775c87a8d9f8
      https://github.com/ehb54/ultrascan3/commit/265038699620b8b1a90c53f84efb775c87a8d9f8
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-08 (Sun, 08 Feb 2026)

  Changed paths:
    M gui/us_csv_loader.cpp
    M utils/us_csv_data.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/qregularexpression


  Commit: 2ea487199988c676fcc1964a6f46d839a5923f6e
      https://github.com/ehb54/ultrascan3/commit/2ea487199988c676fcc1964a6f46d839a5923f6e
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-09 (Mon, 09 Feb 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP | 6. Report | GMP Reporter -- do not treat models for triples unselected via MWL settings in AProfile...


  Commit: 61e17120bfea3d3fe14220a8a0813e06f91b405e
      https://github.com/ehb54/ultrascan3/commit/61e17120bfea3d3fe14220a8a0813e06f91b405e
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-09 (Mon, 09 Feb 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  GMP | 6. Report | GMP Reporter -- [test for exclusion from replicas averages ] do not treat models for triples unselected via MWL settings in AProfile...


  Commit: bc93bdb1ac483145af191042bca04ce2dae6160c
      https://github.com/ehb54/ultrascan3/commit/bc93bdb1ac483145af191042bca04ce2dae6160c
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-09 (Mon, 09 Feb 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP | 6. Report | GMP Reporter -- [test for exclusion from replicas averages ] do not treat models for triples unselected via MWL settings in AProfile...


  Commit: f422eaebafa361f357d0b27d3f56d3f4d3247f8e
      https://github.com/ehb54/ultrascan3/commit/f422eaebafa361f357d0b27d3f56d3f4d3247f8e
  Author: Saeed <github.com/samo38>
  Date:   2026-02-10 (Tue, 10 Feb 2026)

  Changed paths:
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h

  Log Message:
  -----------
  us_ga_init: add Rh


  Commit: 64aaf14c987aa4ffd38f3384794e8d48c9db4550
      https://github.com/ehb54/ultrascan3/commit/64aaf14c987aa4ffd38f3384794e8d48c9db4550
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-10 (Tue, 10 Feb 2026)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp

  Log Message:
  -----------
  GMP | 6. Report | GMP Reporter -- debugs...


  Commit: 0948900b5205298e629f088eb4065f427533405a
      https://github.com/ehb54/ultrascan3/commit/0948900b5205298e629f088eb4065f427533405a
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-10 (Tue, 10 Feb 2026)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp

  Log Message:
  -----------
  [1]GMP | 6. Report | GMP Reporter -- debugs...


  Commit: dea86432abbfcb78b4a27b2d6ff3e2598049a457
      https://github.com/ehb54/ultrascan3/commit/dea86432abbfcb78b4a27b2d6ff3e2598049a457
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-10 (Tue, 10 Feb 2026)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [3]GMP | 6. Report | GMP Reporter -- debugs...


  Commit: 460d442cc51bf15666694018e83b32f67ad3b7d3
      https://github.com/ehb54/ultrascan3/commit/460d442cc51bf15666694018e83b32f67ad3b7d3
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-10 (Tue, 10 Feb 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [44]GMP | 6. Report | GMP Reporter -- debugs...


  Commit: dd8f0db7bde551fdadeb9537b163c89d4a92c354
      https://github.com/ehb54/ultrascan3/commit/dd8f0db7bde551fdadeb9537b163c89d4a92c354
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-10 (Tue, 10 Feb 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [55]GMP | 6. Report | GMP Reporter -- debugs...


  Commit: 03cfa5a45de626720e1950e9f8175c43f8f4eeda
      https://github.com/ehb54/ultrascan3/commit/03cfa5a45de626720e1950e9f8175c43f8f4eeda
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-10 (Tue, 10 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  GMP | 1. EXP.: dataDisk -- preclude uploading data with mismatching wvls in A/B channels of each cell ..


  Commit: 3f5f87a55d56cc92cf12660f817aac9818f146c2
      https://github.com/ehb54/ultrascan3/commit/3f5f87a55d56cc92cf12660f817aac9818f146c2
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-11 (Wed, 11 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_proto_ranges.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/qregularexpression


  Commit: c15785325aacd959a7751c0d680b21526c3d13c2
      https://github.com/ehb54/ultrascan3/commit/c15785325aacd959a7751c0d680b21526c3d13c2
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-11 (Wed, 11 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_proto_ranges.cpp

  Log Message:
  -----------
  Remove unused QRegularExpression definition

Removed commented-out QRegularExpression for range matching.


  Commit: 7dd74a941f99399277845ebc113b332cb11a6c83
      https://github.com/ehb54/ultrascan3/commit/7dd74a941f99399277845ebc113b332cb11a6c83
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-11 (Wed, 11 Feb 2026)

  Changed paths:
    M programs/us_fit_meniscus/CMakeLists.txt

  Log Message:
  -----------
  Refactor CMakeLists.txt for us_fit_meniscus

Updated the CMake configuration to simplify the build process by removing conditional library builds and directly linking the executable to the common library.


  Commit: c0861a3c61ea3133bd02b3dd1974217fa41b6ccb
      https://github.com/ehb54/ultrascan3/commit/c0861a3c61ea3133bd02b3dd1974217fa41b6ccb
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-11 (Wed, 11 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h

  Log Message:
  -----------
  GMP | 1. EXP.: dataDisk -- set all tabs but few to readonly upon dataDisk upload; unset when dataDisk uncheched ..


  Commit: 51825487cf5107edca76f02968f26dd1d142173d
      https://github.com/ehb54/ultrascan3/commit/51825487cf5107edca76f02968f26dd1d142173d
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-11 (Wed, 11 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp

  Log Message:
  -----------
  [1]GMP | 1. EXP.: dataDisk -- set all tabs but few to readonly upon dataDisk upload; unset when dataDisk uncheched ..


  Commit: b4b6df18011d41ed7209dca2fa4580a93512d976
      https://github.com/ehb54/ultrascan3/commit/b4b6df18011d41ed7209dca2fa4580a93512d976
  Author: Saeed <github.com/samo38>
  Date:   2026-02-11 (Wed, 11 Feb 2026)

  Changed paths:
    M programs/us_ga_init/us_solutedata.cpp

  Log Message:
  -----------
  us_ga_init/us_solutedata: add Hr to the report file


  Commit: a10c820b1808470ff1529c74ae9e8cbb6f2db80f
      https://github.com/ehb54/ultrascan3/commit/a10c820b1808470ff1529c74ae9e8cbb6f2db80f
  Author: Saeed <github.com/samo38>
  Date:   2026-02-11 (Wed, 11 Feb 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h

  Log Message:
  -----------
  us_ddist_combine: add Rh to the discrete distributions program


  Commit: 3e454dd1eca619263c23dc1206fe22fb60c737c4
      https://github.com/ehb54/ultrascan3/commit/3e454dd1eca619263c23dc1206fe22fb60c737c4
  Author: Saeed <github.com/samo38>
  Date:   2026-02-11 (Wed, 11 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_proto_ranges.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_699


  Commit: 9e51cdcfa43a81f4121dea2aa9d99d5f9cfe7d05
      https://github.com/ehb54/ultrascan3/commit/9e51cdcfa43a81f4121dea2aa9d99d5f9cfe7d05
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-12 (Thu, 12 Feb 2026)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp

  Log Message:
  -----------
  GMP | 1. EXP.: 8.AProfile:2DSA -- remove check for metadata in customgrid models in GMP...


  Commit: 482dbb495512e7628e78756240055909d096c476
      https://github.com/ehb54/ultrascan3/commit/482dbb495512e7628e78756240055909d096c476
  Author: Saeed <github.com/samo38>
  Date:   2026-02-12 (Thu, 12 Feb 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_modelmetrics/us_modelmetrics.cpp

  Log Message:
  -----------
  us nm unit for hydrodynamic radius


  Commit: 679d24e59f88ba1d091f5f2d7025cebce66847a2
      https://github.com/ehb54/ultrascan3/commit/679d24e59f88ba1d091f5f2d7025cebce66847a2
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-13 (Fri, 13 Feb 2026)

  Changed paths:
    M gui/us_plot.cpp

  Log Message:
  -----------
  Adjust button sizes in `us_plot.cpp` to improve UI consistency. Add missing size configurations for `btnCMap`.


  Commit: 9c4bc4cfdbca84956e3698eae833736bd38049ec
      https://github.com/ehb54/ultrascan3/commit/9c4bc4cfdbca84956e3698eae833736bd38049ec
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-13 (Fri, 13 Feb 2026)

  Changed paths:
    M gui/us_analysis_base2.cpp
    M gui/us_analysis_base2.h

  Log Message:
  -----------
  Refactor `US_AnalysisBase2` to improve readability and maintainability:

- Replace raw arrays with `QVector` for `x_weights` and `y_weights`.
- Use `QSignalBlocker` to simplify signal connection management.
- Switch from old-style signal/slot syntax to the new syntax.
- Add `reset_data` and `reset_gui` methods to centralize reset logic.
- Update function parameters to use `const` where applicable.
- Improve code consistency with `nullptr` and `static_cast`.


  Commit: 53e206359e71440d79578430acdebaef4dcaedf0
      https://github.com/ehb54/ultrascan3/commit/53e206359e71440d79578430acdebaef4dcaedf0
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-13 (Fri, 13 Feb 2026)

  Changed paths:
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_2dsa/us_2dsa.h

  Log Message:
  -----------
  Add `reset`, `reset_data`, and `reset_gui` methods to `US_2dsa`. Refactor signal/slot connections to new-style syntax for improved clarity and maintainability.


  Commit: 7947fe35531e4787b56f263dd0789b40f196dc98
      https://github.com/ehb54/ultrascan3/commit/7947fe35531e4787b56f263dd0789b40f196dc98
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-13 (Fri, 13 Feb 2026)

  Changed paths:
    M programs/us_dcdt/us_dcdt.cpp
    M programs/us_dcdt/us_dcdt.h

  Log Message:
  -----------
  Refactor `US_Dcdt` for signal/slot modernization and reset logic centralization:

- Refactor signal/slot connections to use the new-style syntax.
- Add `reset_data` and `reset_gui` methods for better modularity.
- Replace repetitive signal blocking with `QSignalBlocker`.


  Commit: aa8931a16cb3c1b35e26f7ae7c12d77303de7449
      https://github.com/ehb54/ultrascan3/commit/aa8931a16cb3c1b35e26f7ae7c12d77303de7449
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-13 (Fri, 13 Feb 2026)

  Changed paths:
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h

  Log Message:
  -----------
  Add `reset`, `reset_data`, and `reset_gui` methods to `US_MwlSpeciesFit` for centralized reset logic.


  Commit: c220871ce8f2a92cd7d0599e8f3f1c8d9d5ca440
      https://github.com/ehb54/ultrascan3/commit/c220871ce8f2a92cd7d0599e8f3f1c8d9d5ca440
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-13 (Fri, 13 Feb 2026)

  Changed paths:
    M programs/us_second_moment/us_second_moment.cpp
    M programs/us_second_moment/us_second_moment.h

  Log Message:
  -----------
  Add `reset`, `reset_data`, and `reset_gui` methods to `US_SecondMoment` for centralized reset logic.


  Commit: 66ad967703fe072619f70bd88332a44b08f6deb7
      https://github.com/ehb54/ultrascan3/commit/66ad967703fe072619f70bd88332a44b08f6deb7
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-13 (Fri, 13 Feb 2026)

  Changed paths:
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.h

  Log Message:
  -----------
  Add `reset`, `reset_data`, and `reset_gui` methods to `US_vHW_Enhanced` for centralized reset logic. Refactor signal/slot connections to new-style syntax for improved readability.


  Commit: 07467629be5a04d4391038f9c0928e1801bea687
      https://github.com/ehb54/ultrascan3/commit/07467629be5a04d4391038f9c0928e1801bea687
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-14 (Sat, 14 Feb 2026)

  Changed paths:
    M CMakeLists.txt
    M gui/us_model_loader.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_proto_ranges.cpp
    A test/utils/test_us_regex.cpp

  Log Message:
  -----------
  Merge pull request #355 from ehb54/lukas/qregularexpression

Add test case for QRegularExpression


  Commit: a4ef846e1efc8c0c36fd8ba95a8624abe699b90d
      https://github.com/ehb54/ultrascan3/commit/a4ef846e1efc8c0c36fd8ba95a8624abe699b90d
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-14 (Sat, 14 Feb 2026)

  Changed paths:
    M CMakeLists.txt
    M gui/us_model_loader.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_proto_ranges.cpp
    A test/utils/test_us_regex.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_fit_meniscus


  Commit: 276cc3fe3d26224cab52f0f3f4300685881cb7b0
      https://github.com/ehb54/ultrascan3/commit/276cc3fe3d26224cab52f0f3f4300685881cb7b0
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2026-02-14 (Sat, 14 Feb 2026)

  Changed paths:
    M CMakeLists.txt
    M gui/us_model_loader.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_proto_ranges.cpp
    A test/utils/test_us_regex.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue727


  Commit: 2fd6c045e09af67fd040a1060e4511630131160d
      https://github.com/ehb54/ultrascan3/commit/2fd6c045e09af67fd040a1060e4511630131160d
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-14 (Sat, 14 Feb 2026)

  Changed paths:
    M programs/us_fit_meniscus/CMakeLists.txt

  Log Message:
  -----------
  Merge pull request #360 from ehb54/lukas/us_fit_meniscus

Refactor CMakeLists.txt for us_fit_meniscus


  Commit: 8c56b13faf08fbb28cae8ccf6065281505773c75
      https://github.com/ehb54/ultrascan3/commit/8c56b13faf08fbb28cae8ccf6065281505773c75
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2026-02-14 (Sat, 14 Feb 2026)

  Changed paths:
    M CMakeLists.txt
    M gui/us_model_loader.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_fit_meniscus/CMakeLists.txt
    A test/utils/test_us_regex.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue722


  Commit: b88e3e9b8bf9b260bb39b1506d42a8109999484f
      https://github.com/ehb54/ultrascan3/commit/b88e3e9b8bf9b260bb39b1506d42a8109999484f
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2026-02-14 (Sat, 14 Feb 2026)

  Changed paths:
    M CMakeLists.txt
    M gui/us_model_loader.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_fit_meniscus/CMakeLists.txt
    A test/utils/test_us_regex.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue726


  Commit: d33d111549b1ef2ab5c3c1fb0221d0d4051f5c45
      https://github.com/ehb54/ultrascan3/commit/d33d111549b1ef2ab5c3c1fb0221d0d4051f5c45
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-14 (Sat, 14 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  Merge pull request #359 from ehb54/alexey-dev-issue722

GMP | 1. EXP.: dataDisk -- preclude uploading data with mismatching wavelengths in A/B channels


  Commit: 0bd3d78bdfcabdbfcf26427148b6c46ba5e35ab0
      https://github.com/ehb54/ultrascan3/commit/0bd3d78bdfcabdbfcf26427148b6c46ba5e35ab0
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-14 (Sat, 14 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_fit_meniscus/CMakeLists.txt

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue727


  Commit: 74decf93e5b0bcb0d14c8b1c478c7ea142927592
      https://github.com/ehb54/ultrascan3/commit/74decf93e5b0bcb0d14c8b1c478c7ea142927592
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-14 (Sat, 14 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue726


  Commit: e2958af17ebf6efb9e81b1f388d776e1ca4e57c9
      https://github.com/ehb54/ultrascan3/commit/e2958af17ebf6efb9e81b1f388d776e1ca4e57c9
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-14 (Sat, 14 Feb 2026)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp

  Log Message:
  -----------
  Merge pull request #363 from ehb54/alexey-dev-issue726

GMP | 1. EXP.: 8.AProfile:2DSA -- remove check for metadata in customGrid models uploaded


  Commit: 146c6530464ca618ee4f58a94b04927bbc7bd34a
      https://github.com/ehb54/ultrascan3/commit/146c6530464ca618ee4f58a94b04927bbc7bd34a
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-14 (Sat, 14 Feb 2026)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue727


  Commit: 0b9cfd848d0d53888d6c22853966518f5b088fe7
      https://github.com/ehb54/ultrascan3/commit/0b9cfd848d0d53888d6c22853966518f5b088fe7
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-14 (Sat, 14 Feb 2026)

  Changed paths:
    M CMakeLists.txt
    M gui/us_model_loader.cpp
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_fit_meniscus/CMakeLists.txt
    A test/utils/test_us_regex.cpp

  Log Message:
  -----------
  Merge pull request #357 from ehb54/main

main to here


  Commit: d874c292e59932a8d126026910cca00d4279ae90
      https://github.com/ehb54/ultrascan3/commit/d874c292e59932a8d126026910cca00d4279ae90
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-14 (Sat, 14 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp

  Log Message:
  -----------
  Merge pull request #361 from ehb54/alexey-dev-issue727

Alexey dev issue727: ReadOnly tabs when dataDisk in GMP


  Commit: b005ec4151340cdf16ce95a47c930d0807c6fc40
      https://github.com/ehb54/ultrascan3/commit/b005ec4151340cdf16ce95a47c930d0807c6fc40
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2026-02-14 (Sat, 14 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue724


  Commit: 49e66ee799500b45cb201876615b40b4ea9e3bd9
      https://github.com/ehb54/ultrascan3/commit/49e66ee799500b45cb201876615b40b4ea9e3bd9
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-15 (Sun, 15 Feb 2026)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  Merge pull request #356 from ehb54/alexey-dev-issue724

GMP | 6. Report | GMP Reporter -- do not treat models for triples unselected in MWL settings as missed


  Commit: c9c647fe4dee50482fd482171b83783d3fae427c
      https://github.com/ehb54/ultrascan3/commit/c9c647fe4dee50482fd482171b83783d3fae427c
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-15 (Sun, 15 Feb 2026)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.cpp

  Log Message:
  -----------
  GMP | 5. ANALSYSI | 6. REPORT -- for fit_meniscus_And_bottom option, make sure to capture mode of meniscus update in 5. ANALAYSIS|FITMEN stage - best fit, or manual update, pass to User Interations section of the Rpeort as well as to audit trail...


  Commit: 0500c3350c3437732e0d9ed656185a5e32ca2584
      https://github.com/ehb54/ultrascan3/commit/0500c3350c3437732e0d9ed656185a5e32ca2584
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-16 (Mon, 16 Feb 2026)

  Changed paths:
    M gui/us_analysis_base2.h

  Log Message:
  -----------
  Make `reset_data` and `reset_gui` non-virtual in `US_AnalysisBase2` to simplify inheritance structure.


  Commit: 074e12d4c448250dccba1b236d2f887b14cd26f0
      https://github.com/ehb54/ultrascan3/commit/074e12d4c448250dccba1b236d2f887b14cd26f0
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-16 (Mon, 16 Feb 2026)

  Changed paths:
    M programs/us_2dsa/us_2dsa.cpp

  Log Message:
  -----------
  Simplify `reset_gui` in `US_2dsa` by removing redundant `nullptr` assignments.


  Commit: 643926ae3cc32d094e7feda27fe58bc9099818ef
      https://github.com/ehb54/ultrascan3/commit/643926ae3cc32d094e7feda27fe58bc9099818ef
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-16 (Mon, 16 Feb 2026)

  Changed paths:
    M programs/us_pcsa/us_pcsa.cpp

  Log Message:
  -----------
  Refactor `US_pcsa` signal/slot connections to use new-style syntax for improved readability and maintainability.


  Commit: 0667d84eda957989a0d1072815ced463ad60dd21
      https://github.com/ehb54/ultrascan3/commit/0667d84eda957989a0d1072815ced463ad60dd21
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-16 (Mon, 16 Feb 2026)

  Changed paths:
    M programs/us_pcsa/us_pcsa.cpp

  Log Message:
  -----------
  Refactor `US_pcsa` to modernize signal/slot connections with new-style syntax for improved clarity and maintainability.


  Commit: 90e550a3655c4e118231ecaaf412f1844d959f34
      https://github.com/ehb54/ultrascan3/commit/90e550a3655c4e118231ecaaf412f1844d959f34
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-16 (Mon, 16 Feb 2026)

  Changed paths:
    M programs/us_pcsa/us_pcsa.cpp
    M programs/us_pcsa/us_pcsa.h

  Log Message:
  -----------
  Refactor `US_pcsa` to replace raw pointer `te_results` with `QPointer` for improved memory management and safety.


  Commit: 8a1a27c3f2cbf5cd2341fe453c6d33a6fe6f5182
      https://github.com/ehb54/ultrascan3/commit/8a1a27c3f2cbf5cd2341fe453c6d33a6fe6f5182
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-16 (Mon, 16 Feb 2026)

  Changed paths:
    M programs/us_pcsa/us_pcsa.cpp
    M programs/us_pcsa/us_pcsa.h

  Log Message:
  -----------
  Refactor `US_pcsa` to remove unused `child_closed` slot and redundant signal/slot connections. Adjust pointer initialization for improved clarity and use `clear()` for better reset logic.


  Commit: 2e87560345745184b24f6b1adc221a84a71ba937
      https://github.com/ehb54/ultrascan3/commit/2e87560345745184b24f6b1adc221a84a71ba937
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-16 (Mon, 16 Feb 2026)

  Changed paths:
    M programs/us_pcsa/us_pcsa.cpp
    M programs/us_pcsa/us_pcsa.h

  Log Message:
  -----------
  Add `reset`, `reset_data`, and `reset_gui` methods to `US_pcsa` for centralized reset logic.


  Commit: 915e9c1eeea05f71a9a76779507fc00a9f7c0cf1
      https://github.com/ehb54/ultrascan3/commit/915e9c1eeea05f71a9a76779507fc00a9f7c0cf1
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-16 (Mon, 16 Feb 2026)

  Changed paths:
    M programs/us_pcsa/us_pcsa.cpp

  Log Message:
  -----------
  Refactor `US_pcsa` for improved readability and maintainability: update conditional checks, initialize variables with modern syntax, and streamline GUI reset logic.


  Commit: f7feea2e4e70bf2d86cf344797d74e454c074bf1
      https://github.com/ehb54/ultrascan3/commit/f7feea2e4e70bf2d86cf344797d74e454c074bf1
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-16 (Mon, 16 Feb 2026)

  Changed paths:
    M gui/us_analysis_base2.cpp

  Log Message:
  -----------
  Refactor `US_AnalysisBase2`: remove redundant `const` in `QDir` declaration and increase precision for `vbar` field display.


  Commit: 7bc3455e432949e1baf6f295e3c3e2918ea647cd
      https://github.com/ehb54/ultrascan3/commit/7bc3455e432949e1baf6f295e3c3e2918ea647cd
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-16 (Mon, 16 Feb 2026)

  Changed paths:
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp

  Log Message:
  -----------
  Refactor `US_MwlSpeciesFit`: enhance `reset_data` by clearing additional containers and initializing `us_gmp_auto_mode` to `false`.


  Commit: 45ebb0d251485129fedf336ed7fe31f374d468b8
      https://github.com/ehb54/ultrascan3/commit/45ebb0d251485129fedf336ed7fe31f374d468b8
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-16 (Mon, 16 Feb 2026)

  Changed paths:
    M CMakeLists.txt
    M gui/us_model_loader.cpp
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_fit_meniscus/CMakeLists.txt
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    A test/utils/test_us_regex.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_analysis_base_reset_button


  Commit: 7e1223aebe668ca75e872f8f2096bff99af80529
      https://github.com/ehb54/ultrascan3/commit/7e1223aebe668ca75e872f8f2096bff99af80529
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-16 (Mon, 16 Feb 2026)

  Changed paths:
    M programs/us_2dsa/us_2dsa.cpp

  Log Message:
  -----------
  Refactor `US_2dsa`: enhance `reset_data` by initializing `dset` and appending it to `dsets`.


  Commit: 7ad4a9ea5ad1ded27de94a0da82a9a2a240a01f4
      https://github.com/ehb54/ultrascan3/commit/7ad4a9ea5ad1ded27de94a0da82a9a2a240a01f4
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-16 (Mon, 16 Feb 2026)

  Changed paths:
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  Update Windows icon resource path in CMakeLists.txt


  Commit: 19e226c14175154289a18157f2ec01fee0d0092c
      https://github.com/ehb54/ultrascan3/commit/19e226c14175154289a18157f2ec01fee0d0092c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-16 (Mon, 16 Feb 2026)

  Changed paths:
    M utils/CMakeLists.txt

  Log Message:
  -----------
  Enable BigObj format for large files in CMake

Added support for BigObj format in MSVC and GCC/Clang compilers for large files.


  Commit: 34e1f1f692d84430b5d47ba46266add455f73b66
      https://github.com/ehb54/ultrascan3/commit/34e1f1f692d84430b5d47ba46266add455f73b66
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-16 (Mon, 16 Feb 2026)

  Changed paths:
    M programs/CMakeLists.txt

  Log Message:
  -----------
  Add link options for Windows Release builds

Add Windows-specific link options for Release builds to suppress console window


  Commit: 82c31c25f15c5c68ad67fa5c4f6adcae251c7ddd
      https://github.com/ehb54/ultrascan3/commit/82c31c25f15c5c68ad67fa5c4f6adcae251c7ddd
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-16 (Mon, 16 Feb 2026)

  Changed paths:
    M programs/us_fit_meniscus/us_fit_meniscus.cpp

  Log Message:
  -----------
  [1]GMP | 5. ANALSYSI | 6. REPORT -- for fit_meniscus_And_bottom option, make sure to capture mode of meniscus update in 5. ANALAYSIS|FITMEN stage - best fit, or manual update, pass to User Interations section of the Rpeort as well as to audit trail...


  Commit: 85154b5fde5b9b552646f5bd6334c86faa744dac
      https://github.com/ehb54/ultrascan3/commit/85154b5fde5b9b552646f5bd6334c86faa744dac
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-16 (Mon, 16 Feb 2026)

  Changed paths:
    M gui/us_analysis_base2.cpp

  Log Message:
  -----------
  Add null check for dbP in disk_controls condition


  Commit: 1abad2a8d207a4293111f589493d27d7d093b877
      https://github.com/ehb54/ultrascan3/commit/1abad2a8d207a4293111f589493d27d7d093b877
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-16 (Mon, 16 Feb 2026)

  Changed paths:
    M utils/CMakeLists.txt

  Log Message:
  -----------
  Add BigObj compile options for us_utils_static


  Commit: 02b8e6a74eda39a2f7930e2a161c0a91392fff6d
      https://github.com/ehb54/ultrascan3/commit/02b8e6a74eda39a2f7930e2a161c0a91392fff6d
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-16 (Mon, 16 Feb 2026)

  Changed paths:
    M gui/us_analysis_base2.cpp
    M gui/us_analysis_base2.h
    M gui/us_plot.cpp
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_2dsa/us_2dsa.h
    M programs/us_dcdt/us_dcdt.cpp
    M programs/us_dcdt/us_dcdt.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h
    M programs/us_pcsa/us_pcsa.cpp
    M programs/us_pcsa/us_pcsa.h
    M programs/us_second_moment/us_second_moment.cpp
    M programs/us_second_moment/us_second_moment.h
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.h

  Log Message:
  -----------
  Merge pull request #364 from ehb54/lukas/us_analysis_base_reset_button

Analysis programs reset button


  Commit: 8816a556aaf04bde3c1bf2d4a8ae26ea83682e81
      https://github.com/ehb54/ultrascan3/commit/8816a556aaf04bde3c1bf2d4a8ae26ea83682e81
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-16 (Mon, 16 Feb 2026)

  Changed paths:
    M gui/us_analysis_base2.cpp
    M gui/us_analysis_base2.h
    M gui/us_plot.cpp
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_2dsa/us_2dsa.h
    M programs/us_dcdt/us_dcdt.cpp
    M programs/us_dcdt/us_dcdt.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h
    M programs/us_pcsa/us_pcsa.cpp
    M programs/us_pcsa/us_pcsa.h
    M programs/us_second_moment/us_second_moment.cpp
    M programs/us_second_moment/us_second_moment.h
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/cmake_fixes


  Commit: c3f92aa4906fca184b43069e3fcf49aa9c65aa9d
      https://github.com/ehb54/ultrascan3/commit/c3f92aa4906fca184b43069e3fcf49aa9c65aa9d
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-16 (Mon, 16 Feb 2026)

  Changed paths:
    M programs/us_fit_meniscus/us_fit_meniscus.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.h

  Log Message:
  -----------
  [2]GMP | 5. ANALSYSI | 6. REPORT -- for fit_meniscus_And_bottom option, make sure to capture mode of meniscus update in 5. ANALAYSIS|FITMEN stage - best fit, or manual update, pass to User Interations section of the Rpeort as well as to audit trail...


  Commit: 1aabf75b57be7e0c7096cab60625574e0b688794
      https://github.com/ehb54/ultrascan3/commit/1aabf75b57be7e0c7096cab60625574e0b688794
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-17 (Tue, 17 Feb 2026)

  Changed paths:
    M gui/us_analysis_base2.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/CMakeLists.txt

  Log Message:
  -----------
  Merge pull request #365 from ehb54/lukas/cmake_fixes

Lukas/cmake fixes


  Commit: 678ff7f6c7bed9024cc5f25e855c87b95ed0db50
      https://github.com/ehb54/ultrascan3/commit/678ff7f6c7bed9024cc5f25e855c87b95ed0db50
  Author: Saeed Mortezazadeh <saeed.mortezazadeh25 at gmail.com>
  Date:   2026-02-17 (Tue, 17 Feb 2026)

  Changed paths:
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h

  Log Message:
  -----------
  us_ga_init: replace plot checkboxs with radiobuttons


  Commit: 7ce3e54ec1ff65f0e3dbbccd1119349c41eeb9a8
      https://github.com/ehb54/ultrascan3/commit/7ce3e54ec1ff65f0e3dbbccd1119349c41eeb9a8
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2026-02-17 (Tue, 17 Feb 2026)

  Changed paths:
    M gui/us_analysis_base2.cpp
    M gui/us_analysis_base2.h
    M gui/us_plot.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_2dsa/us_2dsa.h
    M programs/us_dcdt/us_dcdt.cpp
    M programs/us_dcdt/us_dcdt.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h
    M programs/us_pcsa/us_pcsa.cpp
    M programs/us_pcsa/us_pcsa.h
    M programs/us_second_moment/us_second_moment.cpp
    M programs/us_second_moment/us_second_moment.h
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.h
    M utils/CMakeLists.txt

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue736


  Commit: 8fc7603a80492999df59ceed6230f0534734c5d8
      https://github.com/ehb54/ultrascan3/commit/8fc7603a80492999df59ceed6230f0534734c5d8
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-17 (Tue, 17 Feb 2026)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.h

  Log Message:
  -----------
  Merge pull request #366 from ehb54/alexey-dev-issue736

User Interactions for 5. ANALYSIS : FITMEN in the GMP report & Audit Trail in case of 'Fit Maniscus & Bottom' option


  Commit: 3902c84e081fd344c94094e6e7c120a10bf3c40f
      https://github.com/ehb54/ultrascan3/commit/3902c84e081fd344c94094e6e7c120a10bf3c40f
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-18 (Wed, 18 Feb 2026)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h

  Log Message:
  -----------
  GMP | 1. EXP. [Gen., 2DSA, PCSA] -- remove Varying Vbar & cons.f/f0 fields in 2DSA; field validators in all tabs....


  Commit: 327e1e2fcb6c942e05029608fbe46152c3027639
      https://github.com/ehb54/ultrascan3/commit/327e1e2fcb6c942e05029608fbe46152c3027639
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-18 (Wed, 18 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  GMP | 1. EXP. : dataDist -- do not impose check for mismatched A/B channs. wvls. for S-data, and singe-channel RA data....


  Commit: c9c5a8725b6a56caf94ad54e46417d544ae8c914
      https://github.com/ehb54/ultrascan3/commit/c9c5a8725b6a56caf94ad54e46417d544ae8c914
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-18 (Wed, 18 Feb 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    A admin/cmake/toolchain-macos.cmake
    A admin/cmake/triplets/arm64-osx-dynamic.cmake
    M admin/cmake/triplets/x64-osx-dynamic.cmake
    R alpha/srcdevel
    R alpha/us.cpp
    M programs/us/CMakeLists.txt
    M scripts/build.sh

  Log Message:
  -----------
  mod: remove alpha folder and update macos build


  Commit: ca2d76006ab1d5031061c41da2fdb082b475438e
      https://github.com/ehb54/ultrascan3/commit/ca2d76006ab1d5031061c41da2fdb082b475438e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-18 (Wed, 18 Feb 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: update environment variable echo statement


  Commit: 12375251f49081bbf84273353a7d7dba7dfa1cde
      https://github.com/ehb54/ultrascan3/commit/12375251f49081bbf84273353a7d7dba7dfa1cde
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-19 (Thu, 19 Feb 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    A admin/cmake/toolchain-macos.cmake
    A admin/cmake/triplets/arm64-osx-dynamic.cmake
    M admin/cmake/triplets/x64-osx-dynamic.cmake
    R alpha/srcdevel
    R alpha/us.cpp
    M programs/us/CMakeLists.txt
    M scripts/build.sh

  Log Message:
  -----------
  Merge pull request #369 from ehb54/629-request-remove-alpha-folder-from-ultrascan3-repo

Remove Alpha Folder


  Commit: d787112c42145adc032e986e17be63d8efd5dfda
      https://github.com/ehb54/ultrascan3/commit/d787112c42145adc032e986e17be63d8efd5dfda
  Author: Saeed <github.com/samo38>
  Date:   2026-02-19 (Thu, 19 Feb 2026)

  Changed paths:
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h

  Log Message:
  -----------
  add check_draw_btn


  Commit: ba06a7cd941b1bb63391e1fba5d30baf782f4d3e
      https://github.com/ehb54/ultrascan3/commit/ba06a7cd941b1bb63391e1fba5d30baf782f4d3e
  Author: Saeed <github.com/samo38>
  Date:   2026-02-19 (Thu, 19 Feb 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    A admin/cmake/toolchain-macos.cmake
    A admin/cmake/triplets/arm64-osx-dynamic.cmake
    M admin/cmake/triplets/x64-osx-dynamic.cmake
    R alpha/srcdevel
    R alpha/us.cpp
    M gui/us_analysis_base2.cpp
    M gui/us_analysis_base2.h
    M gui/us_model_loader.cpp
    M gui/us_plot.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_2dsa/us_2dsa.h
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_dcdt/us_dcdt.cpp
    M programs/us_dcdt/us_dcdt.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_fit_meniscus/CMakeLists.txt
    M programs/us_fit_meniscus/us_fit_meniscus.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h
    M programs/us_pcsa/us_pcsa.cpp
    M programs/us_pcsa/us_pcsa.h
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_second_moment/us_second_moment.cpp
    M programs/us_second_moment/us_second_moment.h
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.h
    M scripts/build.sh
    A test/utils/test_us_regex.cpp
    M utils/CMakeLists.txt

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_699


  Commit: 0e8e23a92b9a25ccfdbb4c7644d30119ab521a43
      https://github.com/ehb54/ultrascan3/commit/0e8e23a92b9a25ccfdbb4c7644d30119ab521a43
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-19 (Thu, 19 Feb 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    A admin/cmake/toolchain-macos.cmake
    A admin/cmake/triplets/arm64-osx-dynamic.cmake
    M admin/cmake/triplets/x64-osx-dynamic.cmake
    R alpha/srcdevel
    R alpha/us.cpp
    M programs/us/CMakeLists.txt
    M scripts/build.sh

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue718


  Commit: ac5f152ac8ba6b0d7f9a65d40f3b7556bc970cee
      https://github.com/ehb54/ultrascan3/commit/ac5f152ac8ba6b0d7f9a65d40f3b7556bc970cee
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-19 (Thu, 19 Feb 2026)

  Changed paths:
    M programs/us_com_project/us_com_project_gui.cpp

  Log Message:
  -----------
  GMP | R&D  -- connect Help btn to help()....


  Commit: 05244eacbe440afd5348b931a95305443dd6673d
      https://github.com/ehb54/ultrascan3/commit/05244eacbe440afd5348b931a95305443dd6673d
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-19 (Thu, 19 Feb 2026)

  Changed paths:
    M gui/us_report_gui.cpp

  Log Message:
  -----------
  GMP | 8. AProf.:Report  -- shift tille for Pseudo3D plots up a bit...


  Commit: 9f65eb0ffed3357339a3500e400ea119f9827144
      https://github.com/ehb54/ultrascan3/commit/9f65eb0ffed3357339a3500e400ea119f9827144
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-19 (Thu, 19 Feb 2026)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h

  Log Message:
  -----------
  Merge pull request #367 from ehb54/alexey-dev-issue718

GMP | 1. EXP. [Gen., 2DSA, PCSA] -- remove Varying Vbar & cons.f/f0 from 2DSA settings; add validators for all numeric fields in Gen.,2DSA,PCSA


  Commit: fb0e5c780bc7aa696e368d9f6d46b22688fe5707
      https://github.com/ehb54/ultrascan3/commit/fb0e5c780bc7aa696e368d9f6d46b22688fe5707
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-19 (Thu, 19 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_proto_ranges.cpp

  Log Message:
  -----------
  GMP | 7. Ranges.: Gary's selector  -- tried to address increments in selections...


  Commit: a6fe9c7b13c638a88e1390c744efd98cbec59acf
      https://github.com/ehb54/ultrascan3/commit/a6fe9c7b13c638a88e1390c744efd98cbec59acf
  Author: Saeed Mortezazadeh <saeed.mortezazadeh25 at gmail.com>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp

  Log Message:
  -----------
  add anno_label(int) to us_ga_init


  Commit: 935d35d3bb247201260925626ead40c7e5911908
      https://github.com/ehb54/ultrascan3/commit/935d35d3bb247201260925626ead40c7e5911908
  Author: Saeed <github.com/samo38>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h

  Log Message:
  -----------
  add help button to the us_legacy_converter


  Commit: a39e0c3fc901b37000aa384dff633eca9b5f21cc
      https://github.com/ehb54/ultrascan3/commit/a39e0c3fc901b37000aa384dff633eca9b5f21cc
  Author: Saeed <github.com/samo38>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h

  Log Message:
  -----------
  us_query_rmsd: add help button


  Commit: bb36da7046d87e90154684ecee5a92e3521fb317
      https://github.com/ehb54/ultrascan3/commit/bb36da7046d87e90154684ecee5a92e3521fb317
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    A admin/cmake/toolchain-macos.cmake
    A admin/cmake/triplets/arm64-osx-dynamic.cmake
    M admin/cmake/triplets/x64-osx-dynamic.cmake
    R alpha/srcdevel
    R alpha/us.cpp
    M programs/us/CMakeLists.txt
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M scripts/build.sh

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue742


  Commit: 9332b11c468511b91b824048956f411d88e92ba2
      https://github.com/ehb54/ultrascan3/commit/9332b11c468511b91b824048956f411d88e92ba2
  Author: Saeed <github.com/samo38>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  add help buttons


  Commit: 2786677b0b7c3dcd1f55bf7fb1c7a78257a3bada
      https://github.com/ehb54/ultrascan3/commit/2786677b0b7c3dcd1f55bf7fb1c7a78257a3bada
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  Merge pull request #368 from ehb54/alexey-dev-issue742

GMP | 1. EXP. : dataDist -- do not impose check for mismatched A/B channs wvl for S-data


  Commit: 3ca613086ee315038618d9ce0a642da1999e7608
      https://github.com/ehb54/ultrascan3/commit/3ca613086ee315038618d9ce0a642da1999e7608
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue746


  Commit: 67ca8b752f82ede833bb3f16e6e3f2f00801a3b5
      https://github.com/ehb54/ultrascan3/commit/67ca8b752f82ede833bb3f16e6e3f2f00801a3b5
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue515


  Commit: d0890b9202cd432e88acb5573eb12401399ac6df
      https://github.com/ehb54/ultrascan3/commit/d0890b9202cd432e88acb5573eb12401399ac6df
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue702


  Commit: 624105a44700833dbabe95610557269b85c9d938
      https://github.com/ehb54/ultrascan3/commit/624105a44700833dbabe95610557269b85c9d938
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_proto_ranges.cpp

  Log Message:
  -----------
  Merge pull request #372 from ehb54/alexey-dev-issue702

GMP | 7. Ranges.: Gary's selector  -- tried to address increments in wvl selections?


  Commit: 649a36c3a6bfc1942f2c116a43de591572e959a5
      https://github.com/ehb54/ultrascan3/commit/649a36c3a6bfc1942f2c116a43de591572e959a5
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_proto_ranges.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue515


  Commit: 253e03b46f36753d81db75a92dcf958d768d29f1
      https://github.com/ehb54/ultrascan3/commit/253e03b46f36753d81db75a92dcf958d768d29f1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_experiment/us_experiment_gui_optima.h

  Log Message:
  -----------
  [1]GMP | R&D  -- connect Help btn to help()....


  Commit: 739bde48ce1e5596b769170a179b245bced40541
      https://github.com/ehb54/ultrascan3/commit/739bde48ce1e5596b769170a179b245bced40541
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_proto_ranges.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue746


  Commit: 2ea90efd5a9ebebf0c1fcef7291f0c14a0a853b6
      https://github.com/ehb54/ultrascan3/commit/2ea90efd5a9ebebf0c1fcef7291f0c14a0a853b6
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M gui/us_report_gui.cpp

  Log Message:
  -----------
  Merge pull request #371 from ehb54/alexey-dev-issue515

GMP | 8. AProf.:Report  -- shift tille for Pseudo3D plots up a bit...


  Commit: 5c69cacb804711a2e1fc839a8bf716a778945747
      https://github.com/ehb54/ultrascan3/commit/5c69cacb804711a2e1fc839a8bf716a778945747
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M gui/us_report_gui.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue746


  Commit: c8f871714964df445fd9b6dac06aa954bcc04d69
      https://github.com/ehb54/ultrascan3/commit/c8f871714964df445fd9b6dac06aa954bcc04d69
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_experiment/us_experiment_gui_optima.h

  Log Message:
  -----------
  Merge pull request #370 from ehb54/alexey-dev-issue746

GMP | R&D  -- connect Help btn to help()....


  Commit: 8eb6af8dac0c0037f48381a8383228ef7f55a358
      https://github.com/ehb54/ultrascan3/commit/8eb6af8dac0c0037f48381a8383228ef7f55a358
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-22 (Sun, 22 Feb 2026)

  Changed paths:
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    R etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm

  Log Message:
  -----------
  mod: remove gmp icons


  Commit: ed169be467f3b5054b1675c832cee30a332f58e1
      https://github.com/ehb54/ultrascan3/commit/ed169be467f3b5054b1675c832cee30a332f58e1
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-22 (Sun, 22 Feb 2026)

  Changed paths:
    A .github/workflows/bump-version.yml
    M .github/workflows/codeql-analysis.yml
    M CMakeLists.txt
    M CMakePresets.json
    M admin/cmake/FindQwt.cmake
    M admin/cmake/GenerateVersion.cmake
    A admin/cmake/toolchain-macos.cmake
    A admin/cmake/triplets/arm64-osx-dynamic.cmake
    A admin/cmake/triplets/x64-mingw-dynamic.cmake
    M admin/cmake/triplets/x64-osx-dynamic.cmake
    R alpha/srcdevel
    R alpha/us.cpp
    A buildsys/vcpkg/overlay-ports/qt5-multimedia/drop-wmf-plugin.patch
    A buildsys/vcpkg/overlay-ports/qt5-multimedia/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qt5-multimedia/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qt5-tools/fix-pkgconfig-qt5uiplugin-not-found.patch
    A buildsys/vcpkg/overlay-ports/qt5-tools/fix-spawnvp-argv.patch
    A buildsys/vcpkg/overlay-ports/qt5-tools/libclang.patch
    A buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qwt-6-1-6/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qwt-6-1-6/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/config.patch
    A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/fix_dll_install.patch
    A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/unofficial-qwt-config.cmake
    A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/config.patch
    A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/fix_dll_install.patch
    A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/unofficial-qwt-config.cmake
    A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/vcpkg.json
    R buildsys/vcpkg/overlay-ports/qwt/portfile.cmake
    R buildsys/vcpkg/overlay-ports/qwt/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-1-6-qt5/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-1-6-qt5/qwtplot3d-config.cmake.in
    A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-1-6-qt5/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt5/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt5/qwtplot3d-config.cmake.in
    A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt5/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt6/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt6/qwtplot3d-config.cmake.in
    A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt6/vcpkg.json
    R buildsys/vcpkg/overlay-ports/qwtplot3d/portfile.cmake
    R buildsys/vcpkg/overlay-ports/qwtplot3d/qwtplot3d-config.cmake.in
    R buildsys/vcpkg/overlay-ports/qwtplot3d/vcpkg.json
    M doc/manual/advanced_config.body
    M gui.pri
    M gui/CMakeLists.txt
    M gui/fix-mac-make.sh
    R gui/images.qrc
    M gui/libus_gui.pro
    M gui/qrc_make_adds.txt
    M gui/us_analysis_base2.cpp
    M gui/us_analysis_base2.h
    M gui/us_analyte_gui.cpp
    M gui/us_analyte_gui.h
    M gui/us_buffer_gui.cpp
    M gui/us_buffer_gui.h
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M gui/us_csv_loader.cpp
    M gui/us_csv_loader.h
    M gui/us_experiment_gui.h
    M gui/us_extinctfitter_gui.cpp
    M gui/us_extinction_gui.cpp
    M gui/us_get_run.cpp
    M gui/us_get_run.h
    M gui/us_gui_util.cpp
    M gui/us_images.cpp
    M gui/us_images.h
    M gui/us_intensity.h
    M gui/us_investigator.cpp
    M gui/us_license.cpp
    M gui/us_minimize.cpp
    M gui/us_model_gui.cpp
    M gui/us_model_loader.cpp
    M gui/us_mwl_data.cpp
    M gui/us_new_spectrum.cpp
    M gui/us_new_spectrum.h
    M gui/us_passwd.cpp
    M gui/us_plot.cpp
    M gui/us_plot.h
    M gui/us_plot3d.cpp
    M gui/us_plot3d.h
    M gui/us_predict1.cpp
    M gui/us_predict1.h
    M gui/us_project_gui.h
    M gui/us_report_gui.cpp
    M gui/us_report_gui.h
    M gui/us_run_details2.cpp
    M gui/us_sassoc.cpp
    M gui/us_sassoc.h
    M gui/us_select_triples.h
    M gui/us_selectbox.h
    M gui/us_solution_gui.cpp
    M gui/us_solution_gui.h
    M gui/us_spectrodata.cpp
    M gui/us_spectrodata.h
    M gui/us_widgets.h
    M makeall.sh
    M programs/CMakeLists.txt
    M programs/main1.inc
    M programs/us/CMakeLists.txt
    M programs/us/revision.sh
    M programs/us/us.cpp
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_2dsa/us_2dsa.h
    M programs/us_2dsa/us_show_norm.cpp
    M programs/us_abde/us_abde_main.cpp
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_abde/us_norm_profile.h
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
    M programs/us_autoflow_analysis/CMakeLists.txt
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.h
    M programs/us_buoyancy/us_buoyancy.cpp
    M programs/us_buoyancy/us_buoyancy.h
    M programs/us_colorgradient/us_colorgradient.cpp
    M programs/us_com_project/CMakeLists.txt
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_com_project_academic/CMakeLists.txt
    M programs/us_combine_models/us_combine_models.cpp
    M programs/us_config/us_color.cpp
    M programs/us_config/us_font.cpp
    M programs/us_config/us_font.h
    M programs/us_config/us_newxpnhost_db.cpp
    M programs/us_config/us_xpnhost_db.cpp
    M programs/us_dcdt/us_dcdt.cpp
    M programs/us_dcdt/us_dcdt.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_density_match/us_density_match.cpp
    M programs/us_dmga_init/us_dmga_init.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M programs/us_edit/us_edit_scan.cpp
    M programs/us_edit/us_edit_scan.h
    M programs/us_esigner_gmp/us_esigner_gmp.cpp
    M programs/us_esigner_gmp/us_esigner_gmp.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_export_legacy/us_export.cpp
    M programs/us_fds_filemanager/us_fds_filemanager.cpp
    M programs/us_fematch/CMakeLists.txt
    M programs/us_fematch/us_fematch.cpp
    M programs/us_fematch/us_plot_control_fem.cpp
    M programs/us_fematch/us_plot_control_fem.h
    M programs/us_fit_meniscus/CMakeLists.txt
    M programs/us_fit_meniscus/us_fit_meniscus.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_globalequil/us_eqfit_control.cpp
    M programs/us_globalequil/us_eqhistogram.cpp
    M programs/us_globalequil/us_eqmath.cpp
    M programs/us_globalequil/us_eqmodel_control.cpp
    M programs/us_globalequil/us_eqreporter.cpp
    M programs/us_globalequil/us_fit_worker.cpp
    M programs/us_globalequil/us_globalequil.cpp
    M programs/us_globalequil/us_globalequil.h
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_manage_data/us_data_model.cpp
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_mwl_species_fit/CMakeLists.txt
    M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
    M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h
    M programs/us_mwl_spectra/us_mwl_spectra.cpp
    M programs/us_mwl_spectra/us_mwls_pltctl.cpp
    M programs/us_mwl_spectra/us_mwls_pltctl.h
    M programs/us_mwlr_viewer/us_mwl_pltctrl.cpp
    M programs/us_mwlr_viewer/us_mwl_pltctrl.h
    M programs/us_mwlr_viewer/us_mwlr_viewer.cpp
    M programs/us_pcsa/us_mlplot.cpp
    M programs/us_pcsa/us_mrecs_loader.cpp
    M programs/us_pcsa/us_pcsa.cpp
    M programs/us_pcsa/us_pcsa.h
    M programs/us_pcsa/us_rpscan.cpp
    M programs/us_pcsa/us_rpscan.h
    M programs/us_protocol_dev/CMakeLists.txt
    M programs/us_protocol_dev/us_protocol_dev_gui.h
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo_absorbance/us_add_refScan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    M programs/us_pseudo_absorbance/us_pseudo_absorbance.cpp
    M programs/us_pseudo_absorbance/us_remove_ri.cpp
    M programs/us_pseudo_absorbance/us_remove_ri.h
    M programs/us_query_rmsd/CMakeLists.txt
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_ramp/us_experiment_ra.cpp
    M programs/us_ramp/us_get_dbrun_ra.cpp
    M programs/us_ramp/us_mwlramp.cpp
    M programs/us_ramp/us_ramp.cpp
    M programs/us_ramp/us_ramp_gui.cpp
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_reporter_gmp/CMakeLists.txt
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_rotor_calibration/us_rotor_calibration.cpp
    M programs/us_rotor_calibration/us_rotor_calibration.h
    M programs/us_second_moment/us_second_moment.cpp
    M programs/us_second_moment/us_second_moment.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h
    M programs/us_vhw_combine/us_vhw_combine.cpp
    M programs/us_vhw_combine/us_vhwc_pltctl.cpp
    M programs/us_vhw_combine/us_vhwc_pltctl.h
    M programs/us_vhw_enhanced/us_distrib_plot.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.h
    M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
    M programs/us_xpn_viewer/us_xpn_viewer_gui.h
    M qwtplot3d/CMakeLists.txt
    M qwtplot3d/include/qwt3d_io_gl2ps.h
    M qwtplot3d/include/qwt3d_openglhelper.h
    M qwtplot3d/include/qwt3d_plot.h
    M qwtplot3d/include/qwt3d_surfaceplot.h
    M qwtplot3d/qwtplot3d.pro
    M qwtplot3d/src/qwt3d_io.cpp
    M qwtplot3d/src/qwt3d_io_gl2ps.cpp
    M qwtplot3d/src/qwt3d_label.cpp
    M qwtplot3d/src/qwt3d_lighting.cpp
    M qwtplot3d/src/qwt3d_movements.cpp
    M qwtplot3d/src/qwt3d_plot.cpp
    M qwtplot3d/src/qwt3d_surfaceplot.cpp
    M scripts/build.sh
    M test/utils/CMakeLists.txt
    M test/utils/test_us_ana_profile.cpp
    A test/utils/test_us_regex.cpp
    M test/utils/test_us_simparms.cpp
    M utils/CMakeLists.txt
    M utils/ius_db2.h
    M utils/libus_utils.pro
    M utils/us_ana_profile.cpp
    M utils/us_ana_profile.h
    M utils/us_analyte.cpp
    M utils/us_analyte.h
    M utils/us_archive.cpp
    M utils/us_archive.h
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_astfem_rsa.cpp
    M utils/us_astfem_rsa.h
    M utils/us_buffer.cpp
    M utils/us_buffer.h
    M utils/us_cfa_data.cpp
    M utils/us_cfa_data.h
    M utils/us_constants.cpp
    M utils/us_constants.h
    M utils/us_convert.cpp
    M utils/us_convert.h
    M utils/us_convertio.cpp
    M utils/us_convertio.h
    M utils/us_crc.cpp
    M utils/us_crc.h
    M utils/us_crypto.cpp
    M utils/us_crypto.h
    M utils/us_csv_data.cpp
    M utils/us_csv_data.h
    M utils/us_dataIO.cpp
    M utils/us_dataIO.h
    M utils/us_datafiles.cpp
    M utils/us_datafiles.h
    M utils/us_db2.cpp
    M utils/us_db2.h
    M utils/us_dmga_constr.cpp
    M utils/us_eprofile.h
    M utils/us_experiment.cpp
    M utils/us_experiment.h
    M utils/us_extern.h
    M utils/us_geturl.cpp
    M utils/us_geturl.h
    M utils/us_global.cpp
    M utils/us_global.h
    M utils/us_gzip.cpp
    M utils/us_gzip.h
    M utils/us_hardware.h
    M utils/us_http_post.h
    M utils/us_hydrosim.cpp
    M utils/us_hydrosim.h
    M utils/us_lamm_astfvm.cpp
    M utils/us_lamm_astfvm.h
    M utils/us_license_t.cpp
    M utils/us_license_t.h
    M utils/us_link_ssl.cpp
    M utils/us_link_ssl.h
    M utils/us_lm.cpp
    M utils/us_local_server.cpp
    M utils/us_local_server.h
    M utils/us_math2.cpp
    M utils/us_math2.h
    M utils/us_matrix.cpp
    M utils/us_matrix.h
    M utils/us_memory.cpp
    M utils/us_memory.h
    M utils/us_model.cpp
    M utils/us_model.h
    M utils/us_noise.cpp
    M utils/us_noise.h
    M utils/us_pcsa_modelrec.cpp
    M utils/us_pcsa_modelrec.h
    M utils/us_project.cpp
    M utils/us_protocol_util.cpp
    M utils/us_protocol_util.h
    M utils/us_report.cpp
    M utils/us_report.h
    M utils/us_report_gmp.cpp
    M utils/us_rotor.cpp
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h
    M utils/us_settings.cpp
    M utils/us_settings.h
    M utils/us_simparms.cpp
    M utils/us_simparms.h
    M utils/us_sleep.h
    M utils/us_solute.cpp
    M utils/us_solute.h
    M utils/us_solution.cpp
    M utils/us_solution.h
    M utils/us_solution_vals.h
    M utils/us_solve_sim.cpp
    M utils/us_stiffbase.cpp
    M utils/us_stiffbase.h
    M utils/us_tar.cpp
    M utils/us_tar.h
    M utils/us_time_state.h
    M utils/us_timer.cpp
    M utils/us_timer.h
    M utils/us_util.cpp
    M utils/us_util.h
    A utils/us_utils_qt.h
    M utils/us_vector.cpp
    M utils/us_vector.h
    M utils/us_xpn_data.cpp
    M utils/us_xpn_data.h
    M utils/us_zsolute.cpp
    M utils/us_zsolute.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into 666-bug-icons-dont-fill-space-on-new-macos


  Commit: a69727d693e60c02d3b9c4db2e16387437816ce5
      https://github.com/ehb54/ultrascan3/commit/a69727d693e60c02d3b9c4db2e16387437816ce5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-23 (Mon, 23 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    A admin/cmake/triplets/arm64-windows.cmake
    M gui/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.ps1
    M vcpkg.json

  Log Message:
  -----------
  Windows ARM64 build fixes: triplet, export macros, windeployqt


  Commit: 84d482ad6f56b2e3acc6c957d97719052eaefbd7
      https://github.com/ehb54/ultrascan3/commit/84d482ad6f56b2e3acc6c957d97719052eaefbd7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-23 (Mon, 23 Feb 2026)

  Changed paths:
    M CMakePresets.json
    R admin/cmake/toolchain-macos.cmake
    A admin/cmake/toolchain.cmake
    A scripts/build.bat
    M scripts/build.ps1
    M scripts/build.sh
    R vcpkg

  Log Message:
  -----------
  mod: add build for windows script and standardize linux and macos build


  Commit: e43bca35c3066c669ca922450241c6bdf5b4de40
      https://github.com/ehb54/ultrascan3/commit/e43bca35c3066c669ca922450241c6bdf5b4de40
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-23 (Mon, 23 Feb 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  fix: processor core check


  Commit: 70a4fd76fe5b6edf065fdf2b5f5ba0bcedb2165e
      https://github.com/ehb54/ultrascan3/commit/70a4fd76fe5b6edf065fdf2b5f5ba0bcedb2165e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-23 (Mon, 23 Feb 2026)

  Changed paths:
    M admin/cmake/toolchain.cmake

  Log Message:
  -----------
  fix: remove force


  Commit: 6d4f2ac655f09a8a6b067f5a54b974908ab10aaf
      https://github.com/ehb54/ultrascan3/commit/6d4f2ac655f09a8a6b067f5a54b974908ab10aaf
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-23 (Mon, 23 Feb 2026)

  Changed paths:
    M admin/cmake/toolchain.cmake

  Log Message:
  -----------
  fix: linux arm64 now handled correctly


  Commit: 0880dfb2dd0e8e00e5613ff36d94c03e11edd27c
      https://github.com/ehb54/ultrascan3/commit/0880dfb2dd0e8e00e5613ff36d94c03e11edd27c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-24 (Tue, 24 Feb 2026)

  Changed paths:
    M CMakePresets.json
    M admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake

  Log Message:
  -----------
  fix: linux arm64 dynamic and config path added


  Commit: 95f4bf13cb912979ba31f07969ede459ee9a3cfb
      https://github.com/ehb54/ultrascan3/commit/95f4bf13cb912979ba31f07969ede459ee9a3cfb
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-24 (Tue, 24 Feb 2026)

  Changed paths:
    M etc/etc_belongs_list.txt
    A etc/us3-GMP-icon-128x128.ico
    A etc/us3-GMP-icon-128x128.png
    A etc/us3-GMP-icon-128x128.xpm
    A etc/us3-GMP-icon-32x32.ico
    A etc/us3-GMP-icon-32x32.png
    A etc/us3-GMP-icon-32x32.xpm
    A etc/us3-GMP-icon-48x48.ico
    A etc/us3-GMP-icon-48x48.png
    A etc/us3-GMP-icon-48x48.xpm

  Log Message:
  -----------
  fix: returned gmp icons back to branch because at least one is used us_comproject.desktop:Icon=/opt/ultrascan3/etc/us3-GMP-icon-128x128.png


  Commit: 8cef6842fe3282a17f7fe6a11688d966a17b86da
      https://github.com/ehb54/ultrascan3/commit/8cef6842fe3282a17f7fe6a11688d966a17b86da
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-25 (Wed, 25 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    R admin/cmake/toolchain-macos.cmake
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M programs/us/CMakeLists.txt
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    R vcpkg
    M vcpkg.json

  Log Message:
  -----------
  Merge pull request #337 from ehb54/666-bug-icons-dont-fill-space-on-new-macos

New Icons


  Commit: f22ac1211864fd6e1e0f4bd0ab603df9a6703163
      https://github.com/ehb54/ultrascan3/commit/f22ac1211864fd6e1e0f4bd0ab603df9a6703163
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M utils/us_astfem_math.cpp
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Add support for `TIMESTATE_TYPE` and `IMPORT_TYPE` in `US_TimeState`: introduce enums, accessor methods, and XML serialization logic.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 92969167df27d9df138b7faee2cb16d988228790
      https://github.com/ehb54/ultrascan3/commit/92969167df27d9df138b7faee2cb16d988228790
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h

  Log Message:
  -----------
  Refactor `US_AstfemMath`: add parameter names to function signatures, update `check_acceleration` to include optional `timestate` argument, and adjust related logic.


  Commit: 4bb72c42f9441f20b9b825741d31d186a728fe4c
      https://github.com/ehb54/ultrascan3/commit/4bb72c42f9441f20b9b825741d31d186a728fe4c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-osx-dynamic.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    M admin/cmake/triplets/x64-osx-dynamic.cmake
    R alpha/srcdevel
    R alpha/us.cpp
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M gui/us_analysis_base2.cpp
    M gui/us_analysis_base2.h
    M gui/us_csv_loader.cpp
    M gui/us_model_loader.cpp
    M gui/us_plot.cpp
    M gui/us_report_gui.cpp
    M gui/us_report_gui.h
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_2dsa/us_2dsa.h
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_dcdt/us_dcdt.cpp
    M programs/us_dcdt/us_dcdt.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_fit_meniscus/CMakeLists.txt
    M programs/us_fit_meniscus/us_fit_meniscus.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h
    M programs/us_pcsa/us_pcsa.cpp
    M programs/us_pcsa/us_pcsa.h
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_second_moment/us_second_moment.cpp
    M programs/us_second_moment/us_second_moment.h
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.h
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    A test/utils/test_us_regex.cpp
    M utils/CMakeLists.txt
    M utils/us_csv_data.cpp
    R vcpkg
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into ticket_747


  Commit: b1b7791e9c3922286c2d9d56c2f0a378911720ee
      https://github.com/ehb54/ultrascan3/commit/b1b7791e9c3922286c2d9d56c2f0a378911720ee
  Author: Saeed <github.com/samo38>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h

  Log Message:
  -----------
  add Rh to us_pseudo3d_combine


  Commit: bd32e3b102e354732b319bc5687719785b83d3f2
      https://github.com/ehb54/ultrascan3/commit/bd32e3b102e354732b319bc5687719785b83d3f2
  Author: Saeed <github.com/samo38>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    R admin/cmake/toolchain-macos.cmake
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M gui/us_report_gui.cpp
    M programs/us/CMakeLists.txt
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    R vcpkg
    M vcpkg.json

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_699


  Commit: 38b548536c2c0458b2cc85f5663ca56eb9538f3f
      https://github.com/ehb54/ultrascan3/commit/38b548536c2c0458b2cc85f5663ca56eb9538f3f
  Author: HabGab <gabirh at myumanitoba.ca>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M gui/us_spectrodata.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h

  Log Message:
  -----------
  Merge pull request #362 from samo38/ticket_699

Ticket 699: adding Hydrodynamic radius to additional plotting programs


  Commit: 6dd71c26fbdb258b25259c7c5e41be982d54a809
      https://github.com/ehb54/ultrascan3/commit/6dd71c26fbdb258b25259c7c5e41be982d54a809
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Refactor US_Crypto for AES-256-GCM encryption


  Commit: 1461b65d9eae700e3429db2b7c19c35361fea861
      https://github.com/ehb54/ultrascan3/commit/1461b65d9eae700e3429db2b7c19c35361fea861
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.h

  Log Message:
  -----------
  Add decryptLegacy function and update decrypt signature


  Commit: ed2647558eb754fa66c8e7d52d3f0b8efac2c53c
      https://github.com/ehb54/ultrascan3/commit/ed2647558eb754fa66c8e7d52d3f0b8efac2c53c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp

  Log Message:
  -----------
  Update encryption tests to expect invalid results


  Commit: 27402a271781fa16ae00a693e5ce8e3f06e8e33e
      https://github.com/ehb54/ultrascan3/commit/27402a271781fa16ae00a693e5ce8e3f06e8e33e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.h

  Log Message:
  -----------
  Fix parameter description for decrypt functions


  Commit: 344a4930c5819ebfd2875eccc84d0a44a446ee31
      https://github.com/ehb54/ultrascan3/commit/344a4930c5819ebfd2875eccc84d0a44a446ee31
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix encryption finalization logic in us_crypto.cpp


  Commit: 817a32ad7fe5e5c35ec0479673a2f4c20a7a8e3c
      https://github.com/ehb54/ultrascan3/commit/817a32ad7fe5e5c35ec0479673a2f4c20a7a8e3c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix tag data retrieval in EVP_CIPHER_CTX_ctrl


  Commit: 096f3590c1a57a798a0c13863e80d333a690b4cf
      https://github.com/ehb54/ultrascan3/commit/096f3590c1a57a798a0c13863e80d333a690b4cf
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix type casting for GCM tag data


  Commit: ca6f560338cfe03c4fa0e60bb95577b526dbf2ed
      https://github.com/ehb54/ultrascan3/commit/ca6f560338cfe03c4fa0e60bb95577b526dbf2ed
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix type casting for GCM tag in us_crypto.cpp


  Commit: d1215ab67e2f9e4aa0bcf349eac8da7f58a9be6a
      https://github.com/ehb54/ultrascan3/commit/d1215ab67e2f9e4aa0bcf349eac8da7f58a9be6a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm

  Log Message:
  -----------
  mod: update 128x128 us-gmp icon and remove others


  Commit: ff02149480e771cbc205a241cee2322ae52a5ea3
      https://github.com/ehb54/ultrascan3/commit/ff02149480e771cbc205a241cee2322ae52a5ea3
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R propignore
    R proppng
    R proptext

  Log Message:
  -----------
  mod: delete svn files


  Commit: 0d744f1905b897d66da68befb43637e8ac4cd7bc
      https://github.com/ehb54/ultrascan3/commit/0d744f1905b897d66da68befb43637e8ac4cd7bc
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R README.linguist
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  mod: remove deprecated translation files and settings


  Commit: 722ffd5c4e0c7d1f2f2c27127e065270ae3c7598
      https://github.com/ehb54/ultrascan3/commit/722ffd5c4e0c7d1f2f2c27127e065270ae3c7598
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm

  Log Message:
  -----------
  Merge pull request #380 from ehb54/773-request-update-us-3-gmp-icons

Icon Maintenance


  Commit: 47dbf4a3837c551d64f6436f25aa7f5f7d482fad
      https://github.com/ehb54/ultrascan3/commit/47dbf4a3837c551d64f6436f25aa7f5f7d482fad
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:

  Log Message:
  -----------
  Merge branch 'main' into 775-bug-svn-files


  Commit: 93fb5f9f839b1aea6d85ed568acc18030ebed5c1
      https://github.com/ehb54/ultrascan3/commit/93fb5f9f839b1aea6d85ed568acc18030ebed5c1
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:

  Log Message:
  -----------
  Merge branch 'main' into 756-bug-translation-maintenance


  Commit: fe5370afd345acf40744a8c872c09eef88887bba
      https://github.com/ehb54/ultrascan3/commit/fe5370afd345acf40744a8c872c09eef88887bba
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R propignore
    R proppng
    R proptext

  Log Message:
  -----------
  Merge pull request #381 from ehb54/775-bug-svn-files

Remove Legacy SVN Files


  Commit: b1b7bdf318164406971f4188a7b3cf8b0aacbbaa
      https://github.com/ehb54/ultrascan3/commit/b1b7bdf318164406971f4188a7b3cf8b0aacbbaa
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:

  Log Message:
  -----------
  Merge branch 'main' into 756-bug-translation-maintenance


  Commit: 90e9cf2eb989a85420f4668067092a143d4457a9
      https://github.com/ehb54/ultrascan3/commit/90e9cf2eb989a85420f4668067092a143d4457a9
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R README.linguist
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  Merge pull request #382 from ehb54/756-bug-translation-maintenance

Translation File Maintenance


  Commit: 300852b8d51c2733817729fab46d6d0e68f5e717
      https://github.com/ehb54/ultrascan3/commit/300852b8d51c2733817729fab46d6d0e68f5e717
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_crypto_buffer_overflow


  Commit: 9c62b533654400def76e5db0eb8c8f4924ff66d1
      https://github.com/ehb54/ultrascan3/commit/9c62b533654400def76e5db0eb8c8f4924ff66d1
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_spectrodata.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  Merge pull request #383 from ehb54/main

Update feature branch to main


  Commit: 0f7d005ceda3b8031c1180200237d736f60a1b4c
      https://github.com/ehb54/ultrascan3/commit/0f7d005ceda3b8031c1180200237d736f60a1b4c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h

  Log Message:
  -----------
  Merge pull request #379 from ehb54/lukas/us_crypto_buffer_overflow

us_crypto: Avoid buffer overflow, support longer passwords, introduce safer encryption


  Commit: 780dac6301b72554362f7cc2944a17a6c64d2aa5
      https://github.com/ehb54/ultrascan3/commit/780dac6301b72554362f7cc2944a17a6c64d2aa5
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Refactor `US_AstfemMath`: improve low acceleration rate handling by adding corrections for slow experiments and original `timestate` checks.


  Commit: 01be09bde2a7cc42512e4a4f215108a9419c0d32
      https://github.com/ehb54/ultrascan3/commit/01be09bde2a7cc42512e4a4f215108a9419c0d32
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.h

  Log Message:
  -----------
  Add `prepareTimeState` method and integrate `US_TimeState` into `US_ConvertGui`


  Commit: e0424b860fb5077ab33b7e5db663b721da5ba290
      https://github.com/ehb54/ultrascan3/commit/e0424b860fb5077ab33b7e5db663b721da5ba290
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp

  Log Message:
  -----------
  Refactor `US_ConvertGui`: implement `prepareTimeState` for streamlined time state preparation and integrate into speed step processing logic.


  Commit: 97b756dde416093dc9c7bb730c4958161c0e0232
      https://github.com/ehb54/ultrascan3/commit/97b756dde416093dc9c7bb730c4958161c0e0232
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/timestate


  Commit: ea9b77b204f53d6694d97541134564d0606916a3
      https://github.com/ehb54/ultrascan3/commit/ea9b77b204f53d6694d97541134564d0606916a3
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp

  Log Message:
  -----------
  Refactor `US_ConvertGui`: streamline file handling logic in time state preparation and enable GUI button state based on file existence.


  Commit: 11fa3a30cb824bce1c32920aa3a6b2c307f54f1a
      https://github.com/ehb54/ultrascan3/commit/11fa3a30cb824bce1c32920aa3a6b2c307f54f1a
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Refactor `US_AstfemMath`: replace `qDebug` with `DbgLv` for consistent debug logging.


  Commit: 5eb4adb03f6cf6e0ab2a6163a5d614d3b034d383
      https://github.com/ehb54/ultrascan3/commit/5eb4adb03f6cf6e0ab2a6163a5d614d3b034d383
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M test/utils/test_us_time_state.cpp

  Log Message:
  -----------
  Update `test_us_time_state`: adjust expected version to `2.2` in origin test.


  Commit: bc8f22c93dcad653e16c52717a9386d9a99c67c9
      https://github.com/ehb54/ultrascan3/commit/bc8f22c93dcad653e16c52717a9386d9a99c67c9
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Refactor password re-encryption logic


  Commit: 93b2e5a2535f0de5b6fe2b4384a60d509571f6d4
      https://github.com/ehb54/ultrascan3/commit/93b2e5a2535f0de5b6fe2b4384a60d509571f6d4
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Check for empty cipherHex and optimize database loop

Added a check for empty cipherHex before decryption and modified the database loop to use a reference.


  Commit: e9f9ae1d960fb6e262803ee6b522247b68cf8894
      https://github.com/ehb54/ultrascan3/commit/e9f9ae1d960fb6e262803ee6b522247b68cf8894
  Author: Saeed <samo38:github>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_spectrodata.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M utils/libus_utils.pro
    M utils/us_crypto.cpp
    M utils/us_crypto.h

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_747


  Commit: 32f3fd93bf886595a3d9b9b0335a74cf5645913a
      https://github.com/ehb54/ultrascan3/commit/32f3fd93bf886595a3d9b9b0335a74cf5645913a
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Initialize `tsobj` with `TIMESTATE_TYPE::ORIGINAL` in `US_TimeState`.


  Commit: f6095ff611d0c2f9f6a04567e6f2a74535dd45fd
      https://github.com/ehb54/ultrascan3/commit/f6095ff611d0c2f9f6a04567e6f2a74535dd45fd
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Initialize `tsobj` with `TIMESTATE_TYPE::ORIGINAL` in `us_xpn_data`.


  Commit: 4cff648f9ba827db6e67e9cedb1a93953e8a0f76
      https://github.com/ehb54/ultrascan3/commit/4cff648f9ba827db6e67e9cedb1a93953e8a0f76
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge pull request #384 from ehb54/lukas/timestate

Add TIMESTATE_TYPE and IMPORT_TYPE support with refactorings


  Commit: 75648618e7f79fde451a6e9f2cf9023d8ed19140
      https://github.com/ehb54/ultrascan3/commit/75648618e7f79fde451a6e9f2cf9023d8ed19140
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h

  Log Message:
  -----------
  Add `load_timestate` methods to `US_ConvertScan` for handling time state from disk or database.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: fb3e874b186e61a3c3b696be002fa6134d681c4e
      https://github.com/ehb54/ultrascan3/commit/fb3e874b186e61a3c3b696be002fa6134d681c4e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h

  Log Message:
  -----------
  Merge pull request #386 from ehb54/lukas/us_pseudo_absorbance_timestate

us_pseudo_absorbance: transfer timestate


  Commit: 1dbeb030075307c5652d506be95a2186a0c22724
      https://github.com/ehb54/ultrascan3/commit/1dbeb030075307c5652d506be95a2186a0c22724
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h

  Log Message:
  -----------
  Refactor `US_Plot`: enhance double-click interactions, add zoom configuration, and improve curve/axis management with event filter.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 72c834e6d8fa6d6cd9d3b1d1eb90cc7410670c01
      https://github.com/ehb54/ultrascan3/commit/72c834e6d8fa6d6cd9d3b1d1eb90cc7410670c01
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  Add "Click Exclusion Mode" in `US_Edit` with hover tooltips and enhanced scan selection functionality.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: ced5c0cf9086f5a21a308bcb214f061a75e89aab
      https://github.com/ehb54/ultrascan3/commit/ced5c0cf9086f5a21a308bcb214f061a75e89aab
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  Add null pointer check for `plot->getZoomer()` in `US_Edit` to prevent potential crashes.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: b5607cb3d6296c0e48283cc6dd1a804c051dd8d9
      https://github.com/ehb54/ultrascan3/commit/b5607cb3d6296c0e48283cc6dd1a804c051dd8d9
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  Remove redundant state machine changes in "Click Exclusion Mode" toggle of `US_Edit`.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: d548b54d3bbac75ffbf270b99643e5cf26257968
      https://github.com/ehb54/ultrascan3/commit/d548b54d3bbac75ffbf270b99643e5cf26257968
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.h

  Log Message:
  -----------
  Initialize members in `CurveDistance` struct with default values to improve stability and prevent undefined behavior.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: f3e23f8189d66b9641b37fb2c54b38119d2ef2ec
      https://github.com/ehb54/ultrascan3/commit/f3e23f8189d66b9641b37fb2c54b38119d2ef2ec
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp

  Log Message:
  -----------
  Refactor `US_Plot`: add new double-click connections, refactor axis configuration, and enhance zoomer signal handling.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: d73cc2971816653d17d72f1785291c00b96b0c8b
      https://github.com/ehb54/ultrascan3/commit/d73cc2971816653d17d72f1785291c00b96b0c8b
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp

  Log Message:
  -----------
  Update `US_Plot::createZoomer` to adjust `US_Zoomer` constructor arguments for axis configuration.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 466789a804273570c11c7cb44bf28924caa363df
      https://github.com/ehb54/ultrascan3/commit/466789a804273570c11c7cb44bf28924caa363df
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: ae52535acb54fede063aaaefd18be0c4ec92474b
      https://github.com/ehb54/ultrascan3/commit/ae52535acb54fede063aaaefd18be0c4ec92474b
  Author: Saeed <samo38:github>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_747


  Commit: 2e81015b2e85d24c6d0619f563c9053fcb5de9e1
      https://github.com/ehb54/ultrascan3/commit/2e81015b2e85d24c6d0619f563c9053fcb5de9e1
  Author: Saeed Mortezazadeh <49119048+samo38 at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge pull request #373 from samo38/ticket_747

Ticket 747: add US_Help to us_legacy_converter, us_query_rmsd, us_extinction, us_spectrum, us_ramp


  Commit: 73d3d9961c360d61b70b25d54f762c7f7435325e
      https://github.com/ehb54/ultrascan3/commit/73d3d9961c360d61b70b25d54f762c7f7435325e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: a54f8e2bc39c26f3e2f95dae43da15eb743e4d25
      https://github.com/ehb54/ultrascan3/commit/a54f8e2bc39c26f3e2f95dae43da15eb743e4d25
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: 8fbf539a26017728861e732dc1d18eb23eb5767b
      https://github.com/ehb54/ultrascan3/commit/8fbf539a26017728861e732dc1d18eb23eb5767b
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt

  Log Message:
  -----------
  Include OpenSSL applink for MSVC on Windows

Add OpenSSL applink shim for MSVC on Windows.


  Commit: 062c3d2366cc1939df31abf0a90ee9aa81093ffe
      https://github.com/ehb54/ultrascan3/commit/062c3d2366cc1939df31abf0a90ee9aa81093ffe
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M utils/us_timer.h

  Log Message:
  -----------
  Replace 'using namespace std' with std:: in us_timer.h

Prevent windows specific type definition conflicts caused by using namespace std;


  Commit: d285dea10ab7bcc93c14b4f74e336121a728f25a
      https://github.com/ehb54/ultrascan3/commit/d285dea10ab7bcc93c14b4f74e336121a728f25a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M vcpkg.json

  Log Message:
  -----------
  Update builtin-baseline version in vcpkg.json


  Commit: 2528e2d95ef721c90585880700173e01e85eaa41
      https://github.com/ehb54/ultrascan3/commit/2528e2d95ef721c90585880700173e01e85eaa41
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  Enhance CMakeLists for Qt6 post-build handling

Added post-build commands for Qt6 integration in Debug and Release modes.


  Commit: 52e46a6c204f209f206de1b17187485510b50872
      https://github.com/ehb54/ultrascan3/commit/52e46a6c204f209f206de1b17187485510b50872
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  Refactor post-build commands for Qt6 on Windows


  Commit: 428287d058712bdf7736b86456a19b29730bec50
      https://github.com/ehb54/ultrascan3/commit/428287d058712bdf7736b86456a19b29730bec50
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M utils/us_timer.h

  Log Message:
  -----------
  Add map include to us_timer.h


  Commit: b1e9456925a223045bd903ef52c4096e0e3675dc
      https://github.com/ehb54/ultrascan3/commit/b1e9456925a223045bd903ef52c4096e0e3675dc
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt

  Log Message:
  -----------
  Add OpenSSL applink condition for MSVC on Windows


  Commit: d9676faa3a7a6a92c56faa175bcd24c240a39b0d
      https://github.com/ehb54/ultrascan3/commit/d9676faa3a7a6a92c56faa175bcd24c240a39b0d
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge pull request #389 from ehb54/lukas/qt6-msvc

CMake Qt6 windows compile MSVC


  Commit: 5c16c03541cbbc99e4d1d5e6304244b7c5cd261d
      https://github.com/ehb54/ultrascan3/commit/5c16c03541cbbc99e4d1d5e6304244b7c5cd261d
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: ffaae2039c0f2f0337ba9cde3e4667ade9f04c5c
      https://github.com/ehb54/ultrascan3/commit/ffaae2039c0f2f0337ba9cde3e4667ade9f04c5c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: f403e0ca772e609f1f064e09815e424e676e96ba
      https://github.com/ehb54/ultrascan3/commit/f403e0ca772e609f1f064e09815e424e676e96ba
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Fix methodChanged to suppress signal and reset checkboxes


  Commit: 4c67ee8e4cb27a2a60a41177608c3cf2565db76a
      https://github.com/ehb54/ultrascan3/commit/4c67ee8e4cb27a2a60a41177608c3cf2565db76a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Remove redundant assignment to tdata

Prevent memory corruption


  Commit: 6437b90d6e57f06e5aafbea01753415627877e6b
      https://github.com/ehb54/ultrascan3/commit/6437b90d6e57f06e5aafbea01753415627877e6b
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp

  Log Message:
  -----------
  Update condition for vbar20 comparison


  Commit: 4c73a0c1ae974bfad85180a15588c4203f772bae
      https://github.com/ehb54/ultrascan3/commit/4c73a0c1ae974bfad85180a15588c4203f772bae
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Fix typo in comment and streamline methodChanged


  Commit: 24cd6bc5d78c14e84c05915d5b043c7628d0c084
      https://github.com/ehb54/ultrascan3/commit/24cd6bc5d78c14e84c05915d5b043c7628d0c084
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge pull request #391 from ehb54/lukas/us_mwl_spectra_3dplot_reversey

Remove redundant assignment to tdata


  Commit: cd22d118497ba373e73cde824f09464646c78f6e
      https://github.com/ehb54/ultrascan3/commit/cd22d118497ba373e73cde824f09464646c78f6e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_analyte_protein_vbar_no_sequence


  Commit: a92e13702d0a02ed4fddd7be57df0c9ec134c449
      https://github.com/ehb54/ultrascan3/commit/a92e13702d0a02ed4fddd7be57df0c9ec134c449
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp

  Log Message:
  -----------
  Merge pull request #392 from ehb54/lukas/us_analyte_protein_vbar_no_sequence

Update condition for vbar20 comparison


  Commit: 648e2c616df93b8cb3f16672c3315e44e99a1cdd
      https://github.com/ehb54/ultrascan3/commit/648e2c616df93b8cb3f16672c3315e44e99a1cdd
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_ddist_combine_all_checkbox


  Commit: 524fb756825b453194c34611c2ce7624e62f7f53
      https://github.com/ehb54/ultrascan3/commit/524fb756825b453194c34611c2ce7624e62f7f53
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: 45a5699260fb89e53971aee6bbf0b5f13d1b40fa
      https://github.com/ehb54/ultrascan3/commit/45a5699260fb89e53971aee6bbf0b5f13d1b40fa
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: 07c6d8042bd25e59ca20ca5bd16ed3b6ff8b321c
      https://github.com/ehb54/ultrascan3/commit/07c6d8042bd25e59ca20ca5bd16ed3b6ff8b321c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge pull request #385 from ehb54/lukas/masterpassword_change

Refactor password re-encryption logic


  Commit: ed3ecfca235f46d9da27159afb01288bbcb42cd4
      https://github.com/ehb54/ultrascan3/commit/ed3ecfca235f46d9da27159afb01288bbcb42cd4
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_ddist_combine_all_checkbox


  Commit: 3e5bea2d6f8973b1443f2db3438bbbcfe128378f
      https://github.com/ehb54/ultrascan3/commit/3e5bea2d6f8973b1443f2db3438bbbcfe128378f
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: 447c06a32ef5ade7850e1391500673c408a9c5e4
      https://github.com/ehb54/ultrascan3/commit/447c06a32ef5ade7850e1391500673c408a9c5e4
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h

  Log Message:
  -----------
  Refactor `US_Zoomer` and `US_DoubleClickEventFilter`: enhance zoom base initialization, update rubber band/tracker pen settings, and improve double-click handling for axes and curves.


  Commit: c9f9553d1be9cca2abdbef64d64daa2688c9b977
      https://github.com/ehb54/ultrascan3/commit/c9f9553d1be9cca2abdbef64d64daa2688c9b977
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Merge pull request #390 from ehb54/lukas/us_ddist_combine_all_checkbox

Change behavior of all button in combine discrete distributions


  Commit: 50ee53da3e470361bd6a9fa94454856cc21660a1
      https://github.com/ehb54/ultrascan3/commit/50ee53da3e470361bd6a9fa94454856cc21660a1
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: c6c251770d12273ef8519ef12212ecaf90df9c8a
      https://github.com/ehb54/ultrascan3/commit/c6c251770d12273ef8519ef12212ecaf90df9c8a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  Merge pull request #388 from ehb54/lukas/us_edit_scan_exclude_click

Refactor US_Plot interactions and enhance US_Edit functionality


  Commit: a69519c6fb88ac27321dca0065ccacf2e220f888
      https://github.com/ehb54/ultrascan3/commit/a69519c6fb88ac27321dca0065ccacf2e220f888
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    R README.linguist
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-osx-dynamic.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    M admin/cmake/triplets/x64-osx-dynamic.cmake
    R alpha/srcdevel
    R alpha/us.cpp
    M etc/etc_belongs_list.txt
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M gui/libus_gui.pro
    M gui/us_analysis_base2.cpp
    M gui/us_analysis_base2.h
    M gui/us_analyte_gui.cpp
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M gui/us_model_loader.cpp
    M gui/us_plot.cpp
    M gui/us_plot.h
    M gui/us_plot3d.cpp
    M gui/us_report_gui.cpp
    M gui/us_spectrodata.h
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_2dsa/us_2dsa.h
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_config/us_admin.cpp
    M programs/us_config/us_config.pro
    M programs/us_dcdt/us_dcdt.cpp
    M programs/us_dcdt/us_dcdt.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_fit_meniscus/CMakeLists.txt
    M programs/us_fit_meniscus/us_fit_meniscus.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pcsa/us_pcsa.cpp
    M programs/us_pcsa/us_pcsa.h
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_second_moment/us_second_moment.cpp
    M programs/us_second_moment/us_second_moment.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.h
    R propignore
    R proppng
    R proptext
    M qwtplot3d/include/qwt3d_openglhelper.h
    R qwtplot3d/lingua_de.ts
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    M test/utils/test_us_crypto.cpp
    A test/utils/test_us_regex.cpp
    M test/utils/test_us_time_state.cpp
    M utils/CMakeLists.txt
    M utils/libus_utils.pro
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_timer.h
    M utils/us_xpn_data.cpp
    R vcpkg
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_fematch


Compare: https://github.com/ehb54/ultrascan3/compare/3e04bd3e445d...a69519c6fb88

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From noreply at github.com  Tue Mar 17 05:21:31 2026
From: noreply at github.com (aaron-auc)
Date: Tue, 17 Mar 2026 04:21:31 -0700
Subject: [us-commits] [ehb54/ultrascan3] efe1a2: add: missing linux packages
 libsm-dev libice-dev
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/4365eb-efe1a2@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: efe1a2ba8b277a19ae50d1262c14239f9f9dac81
      https://github.com/ehb54/ultrascan3/commit/efe1a2ba8b277a19ae50d1262c14239f9f9dac81
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M scripts/bootstrap-linux.sh

  Log Message:
  -----------
  add: missing linux packages libsm-dev libice-dev



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From noreply at github.com  Tue Mar 17 06:05:39 2026
From: noreply at github.com (aaron-auc)
Date: Tue, 17 Mar 2026 05:05:39 -0700
Subject: [us-commits] [ehb54/ultrascan3] 84f1fa: add: port overlay for linux
 arm fix
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/efe1a2-84f1fa@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 84f1faaa0819a233d3023bd3ae0d75d2ccaf6430
      https://github.com/ehb54/ultrascan3/commit/84f1faaa0819a233d3023bd3ae0d75d2ccaf6430
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    A buildsys/vcpkg/overlay-ports/mpg123/fix-arm64-no-fpu-neon64.patch
    A buildsys/vcpkg/overlay-ports/mpg123/have-fpu.diff
    A buildsys/vcpkg/overlay-ports/mpg123/pkgconfig.diff
    A buildsys/vcpkg/overlay-ports/mpg123/portfile.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/vcpkg.json

  Log Message:
  -----------
  add: port overlay for linux arm fix



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From noreply at github.com  Tue Mar 17 12:49:10 2026
From: noreply at github.com (alexsav815)
Date: Tue, 17 Mar 2026 11:49:10 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue791/000000-c6c251@github.com>

  Branch: refs/heads/alexey-dev-issue791
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Tue Mar 17 14:28:37 2026
From: noreply at github.com (Lukas Dobler)
Date: Tue, 17 Mar 2026 13:28:37 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_crypto_decrypt_fix/000000-c6c251@github.com>

  Branch: refs/heads/lukas/us_crypto_decrypt_fix
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Tue Mar 17 14:29:22 2026
From: noreply at github.com (Lukas Dobler)
Date: Tue, 17 Mar 2026 13:29:22 -0700
Subject: [us-commits] [ehb54/ultrascan3] aae4ac: Change encryption
 finalization to decryption
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_crypto_decrypt_fix/c6c251-aae4ac@github.com>

  Branch: refs/heads/lukas/us_crypto_decrypt_fix
  Home:   https://github.com/ehb54/ultrascan3
  Commit: aae4ac3a14f0a1c0ce391cedb1844ac845045869
      https://github.com/ehb54/ultrascan3/commit/aae4ac3a14f0a1c0ce391cedb1844ac845045869
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Change encryption finalization to decryption



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From noreply at github.com  Tue Mar 17 14:38:13 2026
From: noreply at github.com (Lukas Dobler)
Date: Tue, 17 Mar 2026 13:38:13 -0700
Subject: [us-commits] [ehb54/ultrascan3] 9454cb: Implement
 EncryptDecryptTest for US_Crypto
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_crypto_decrypt_fix/aae4ac-9454cb@github.com>

  Branch: refs/heads/lukas/us_crypto_decrypt_fix
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 9454cb777d85cb65835ea5eb51fc05bc18d58e78
      https://github.com/ehb54/ultrascan3/commit/9454cb777d85cb65835ea5eb51fc05bc18d58e78
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp

  Log Message:
  -----------
  Implement EncryptDecryptTest for US_Crypto

Add unit test for encryption and decryption consistency



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From noreply at github.com  Tue Mar 17 14:41:25 2026
From: noreply at github.com (Lukas Dobler)
Date: Tue, 17 Mar 2026 13:41:25 -0700
Subject: [us-commits] [ehb54/ultrascan3] 2c028d: Add unit test for
 encryption with different passwords
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_crypto_decrypt_fix/9454cb-2c028d@github.com>

  Branch: refs/heads/lukas/us_crypto_decrypt_fix
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 2c028de85502d48e60a380c61b93dc7a7e2f7727
      https://github.com/ehb54/ultrascan3/commit/2c028de85502d48e60a380c61b93dc7a7e2f7727
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp

  Log Message:
  -----------
  Add unit test for encryption with different passwords



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From noreply at github.com  Tue Mar 17 15:32:01 2026
From: noreply at github.com (alexsav815)
Date: Tue, 17 Mar 2026 14:32:01 -0700
Subject: [us-commits] [ehb54/ultrascan3] ac1ca1: GMP-ABDE: Ranges & Upload
 check for ext. profiles ...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue791/c6c251-ac1ca1@github.com>

  Branch: refs/heads/alexey-dev-issue791
  Home:   https://github.com/ehb54/ultrascan3
  Commit: ac1ca1f8183d056ed7e98541ac5ac52d725b33f8
      https://github.com/ehb54/ultrascan3/commit/ac1ca1f8183d056ed7e98541ac5ac52d725b33f8
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h

  Log Message:
  -----------
  GMP-ABDE: Ranges & Upload check for ext. profiles -- while situations when extinction profiles for one or more analytes do not cover all wvls in Ranges are caught, the message is misleading and does not provide a hint for inability to proceed; capture exact message at the stage of living 7. Ranges panel & pass to Upload tab before enabling run submission...



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From noreply at github.com  Tue Mar 17 16:35:37 2026
From: noreply at github.com (Lukas Dobler)
Date: Tue, 17 Mar 2026 15:35:37 -0700
Subject: [us-commits] [ehb54/ultrascan3] aae4ac: Change encryption
 finalization to decryption
Message-ID: <ehb54/ultrascan3/push/refs/heads/main/c6c251-b94ce3@github.com>

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/ultrascan3
  Commit: aae4ac3a14f0a1c0ce391cedb1844ac845045869
      https://github.com/ehb54/ultrascan3/commit/aae4ac3a14f0a1c0ce391cedb1844ac845045869
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Change encryption finalization to decryption


  Commit: 9454cb777d85cb65835ea5eb51fc05bc18d58e78
      https://github.com/ehb54/ultrascan3/commit/9454cb777d85cb65835ea5eb51fc05bc18d58e78
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp

  Log Message:
  -----------
  Implement EncryptDecryptTest for US_Crypto

Add unit test for encryption and decryption consistency


  Commit: 2c028de85502d48e60a380c61b93dc7a7e2f7727
      https://github.com/ehb54/ultrascan3/commit/2c028de85502d48e60a380c61b93dc7a7e2f7727
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp

  Log Message:
  -----------
  Add unit test for encryption with different passwords


  Commit: b94ce34c55dd06ddc8ccfbb1239c262fe1c9cd52
      https://github.com/ehb54/ultrascan3/commit/b94ce34c55dd06ddc8ccfbb1239c262fe1c9cd52
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge pull request #395 from ehb54/lukas/us_crypto_decrypt_fix

Change encryption finalization to decryption


Compare: https://github.com/ehb54/ultrascan3/compare/c6c251770d12...b94ce34c55dd

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From noreply at github.com  Tue Mar 17 16:35:42 2026
From: noreply at github.com (Lukas Dobler)
Date: Tue, 17 Mar 2026 15:35:42 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_crypto_decrypt_fix/2c028d-000000@github.com>

  Branch: refs/heads/lukas/us_crypto_decrypt_fix
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Tue Mar 17 16:38:10 2026
From: noreply at github.com (alexsav815)
Date: Tue, 17 Mar 2026 15:38:10 -0700
Subject: [us-commits] [ehb54/ultrascan3] aae4ac: Change encryption
 finalization to decryption
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue791/ac1ca1-d6c8bb@github.com>

  Branch: refs/heads/alexey-dev-issue791
  Home:   https://github.com/ehb54/ultrascan3
  Commit: aae4ac3a14f0a1c0ce391cedb1844ac845045869
      https://github.com/ehb54/ultrascan3/commit/aae4ac3a14f0a1c0ce391cedb1844ac845045869
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Change encryption finalization to decryption


  Commit: 9454cb777d85cb65835ea5eb51fc05bc18d58e78
      https://github.com/ehb54/ultrascan3/commit/9454cb777d85cb65835ea5eb51fc05bc18d58e78
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp

  Log Message:
  -----------
  Implement EncryptDecryptTest for US_Crypto

Add unit test for encryption and decryption consistency


  Commit: 2c028de85502d48e60a380c61b93dc7a7e2f7727
      https://github.com/ehb54/ultrascan3/commit/2c028de85502d48e60a380c61b93dc7a7e2f7727
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp

  Log Message:
  -----------
  Add unit test for encryption with different passwords


  Commit: b94ce34c55dd06ddc8ccfbb1239c262fe1c9cd52
      https://github.com/ehb54/ultrascan3/commit/b94ce34c55dd06ddc8ccfbb1239c262fe1c9cd52
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge pull request #395 from ehb54/lukas/us_crypto_decrypt_fix

Change encryption finalization to decryption


  Commit: d6c8bb86eb4e77d526599971c15a35328a4927d8
      https://github.com/ehb54/ultrascan3/commit/d6c8bb86eb4e77d526599971c15a35328a4927d8
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue791


Compare: https://github.com/ehb54/ultrascan3/compare/ac1ca1f8183d...d6c8bb86eb4e

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From noreply at github.com  Tue Mar 17 16:38:59 2026
From: noreply at github.com (alexsav815)
Date: Tue, 17 Mar 2026 15:38:59 -0700
Subject: [us-commits] [ehb54/ultrascan3] 1dbeb0: Refactor `US_Plot`: enhance
 double-click interacti...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue785/cfd2bf-e16350@github.com>

  Branch: refs/heads/alexey-dev-issue785
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 1dbeb030075307c5652d506be95a2186a0c22724
      https://github.com/ehb54/ultrascan3/commit/1dbeb030075307c5652d506be95a2186a0c22724
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h

  Log Message:
  -----------
  Refactor `US_Plot`: enhance double-click interactions, add zoom configuration, and improve curve/axis management with event filter.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 72c834e6d8fa6d6cd9d3b1d1eb90cc7410670c01
      https://github.com/ehb54/ultrascan3/commit/72c834e6d8fa6d6cd9d3b1d1eb90cc7410670c01
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  Add "Click Exclusion Mode" in `US_Edit` with hover tooltips and enhanced scan selection functionality.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: ced5c0cf9086f5a21a308bcb214f061a75e89aab
      https://github.com/ehb54/ultrascan3/commit/ced5c0cf9086f5a21a308bcb214f061a75e89aab
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  Add null pointer check for `plot->getZoomer()` in `US_Edit` to prevent potential crashes.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: b5607cb3d6296c0e48283cc6dd1a804c051dd8d9
      https://github.com/ehb54/ultrascan3/commit/b5607cb3d6296c0e48283cc6dd1a804c051dd8d9
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  Remove redundant state machine changes in "Click Exclusion Mode" toggle of `US_Edit`.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: d548b54d3bbac75ffbf270b99643e5cf26257968
      https://github.com/ehb54/ultrascan3/commit/d548b54d3bbac75ffbf270b99643e5cf26257968
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.h

  Log Message:
  -----------
  Initialize members in `CurveDistance` struct with default values to improve stability and prevent undefined behavior.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: f3e23f8189d66b9641b37fb2c54b38119d2ef2ec
      https://github.com/ehb54/ultrascan3/commit/f3e23f8189d66b9641b37fb2c54b38119d2ef2ec
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp

  Log Message:
  -----------
  Refactor `US_Plot`: add new double-click connections, refactor axis configuration, and enhance zoomer signal handling.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: d73cc2971816653d17d72f1785291c00b96b0c8b
      https://github.com/ehb54/ultrascan3/commit/d73cc2971816653d17d72f1785291c00b96b0c8b
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp

  Log Message:
  -----------
  Update `US_Plot::createZoomer` to adjust `US_Zoomer` constructor arguments for axis configuration.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: a54f8e2bc39c26f3e2f95dae43da15eb743e4d25
      https://github.com/ehb54/ultrascan3/commit/a54f8e2bc39c26f3e2f95dae43da15eb743e4d25
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: ffaae2039c0f2f0337ba9cde3e4667ade9f04c5c
      https://github.com/ehb54/ultrascan3/commit/ffaae2039c0f2f0337ba9cde3e4667ade9f04c5c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: f403e0ca772e609f1f064e09815e424e676e96ba
      https://github.com/ehb54/ultrascan3/commit/f403e0ca772e609f1f064e09815e424e676e96ba
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Fix methodChanged to suppress signal and reset checkboxes


  Commit: 4c73a0c1ae974bfad85180a15588c4203f772bae
      https://github.com/ehb54/ultrascan3/commit/4c73a0c1ae974bfad85180a15588c4203f772bae
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Fix typo in comment and streamline methodChanged


  Commit: 648e2c616df93b8cb3f16672c3315e44e99a1cdd
      https://github.com/ehb54/ultrascan3/commit/648e2c616df93b8cb3f16672c3315e44e99a1cdd
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_ddist_combine_all_checkbox


  Commit: 524fb756825b453194c34611c2ce7624e62f7f53
      https://github.com/ehb54/ultrascan3/commit/524fb756825b453194c34611c2ce7624e62f7f53
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: ed3ecfca235f46d9da27159afb01288bbcb42cd4
      https://github.com/ehb54/ultrascan3/commit/ed3ecfca235f46d9da27159afb01288bbcb42cd4
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_ddist_combine_all_checkbox


  Commit: 3e5bea2d6f8973b1443f2db3438bbbcfe128378f
      https://github.com/ehb54/ultrascan3/commit/3e5bea2d6f8973b1443f2db3438bbbcfe128378f
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: 447c06a32ef5ade7850e1391500673c408a9c5e4
      https://github.com/ehb54/ultrascan3/commit/447c06a32ef5ade7850e1391500673c408a9c5e4
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h

  Log Message:
  -----------
  Refactor `US_Zoomer` and `US_DoubleClickEventFilter`: enhance zoom base initialization, update rubber band/tracker pen settings, and improve double-click handling for axes and curves.


  Commit: c9f9553d1be9cca2abdbef64d64daa2688c9b977
      https://github.com/ehb54/ultrascan3/commit/c9f9553d1be9cca2abdbef64d64daa2688c9b977
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Merge pull request #390 from ehb54/lukas/us_ddist_combine_all_checkbox

Change behavior of all button in combine discrete distributions


  Commit: 50ee53da3e470361bd6a9fa94454856cc21660a1
      https://github.com/ehb54/ultrascan3/commit/50ee53da3e470361bd6a9fa94454856cc21660a1
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: c6c251770d12273ef8519ef12212ecaf90df9c8a
      https://github.com/ehb54/ultrascan3/commit/c6c251770d12273ef8519ef12212ecaf90df9c8a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  Merge pull request #388 from ehb54/lukas/us_edit_scan_exclude_click

Refactor US_Plot interactions and enhance US_Edit functionality


  Commit: aae4ac3a14f0a1c0ce391cedb1844ac845045869
      https://github.com/ehb54/ultrascan3/commit/aae4ac3a14f0a1c0ce391cedb1844ac845045869
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Change encryption finalization to decryption


  Commit: 9454cb777d85cb65835ea5eb51fc05bc18d58e78
      https://github.com/ehb54/ultrascan3/commit/9454cb777d85cb65835ea5eb51fc05bc18d58e78
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp

  Log Message:
  -----------
  Implement EncryptDecryptTest for US_Crypto

Add unit test for encryption and decryption consistency


  Commit: 2c028de85502d48e60a380c61b93dc7a7e2f7727
      https://github.com/ehb54/ultrascan3/commit/2c028de85502d48e60a380c61b93dc7a7e2f7727
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp

  Log Message:
  -----------
  Add unit test for encryption with different passwords


  Commit: b94ce34c55dd06ddc8ccfbb1239c262fe1c9cd52
      https://github.com/ehb54/ultrascan3/commit/b94ce34c55dd06ddc8ccfbb1239c262fe1c9cd52
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge pull request #395 from ehb54/lukas/us_crypto_decrypt_fix

Change encryption finalization to decryption


  Commit: e163509a00c5876ac83d78f14c8a969dae251b75
      https://github.com/ehb54/ultrascan3/commit/e163509a00c5876ac83d78f14c8a969dae251b75
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue785


Compare: https://github.com/ehb54/ultrascan3/compare/cfd2bf22ab1f...e163509a00c5

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From noreply at github.com  Tue Mar 17 18:04:40 2026
From: noreply at github.com (aaron-auc)
Date: Tue, 17 Mar 2026 17:04:40 -0700
Subject: [us-commits] [ehb54/ultrascan3] 501ade: add: overlay port for
 qttools
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/84f1fa-501ade@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 501adedca88f7d331c3a70d62c04cc4992f86979
      https://github.com/ehb54/ultrascan3/commit/501adedca88f7d331c3a70d62c04cc4992f86979
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/macos/MacDeploy.cmake
    M admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
    A admin/cmake/packaging/macos/StageAssistantDev.cmake
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
    A buildsys/vcpkg/overlay-ports/qttools/port.data.cmake
    A buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat
    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
    M programs/us/CMakeLists.txt
    M scripts/build.sh

  Log Message:
  -----------
  add: overlay port for qttools



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From noreply at github.com  Tue Mar 17 18:09:53 2026
From: noreply at github.com (aaron-auc)
Date: Tue, 17 Mar 2026 17:09:53 -0700
Subject: [us-commits] [ehb54/ultrascan3] 1dbeb0: Refactor `US_Plot`: enhance
 double-click interacti...
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/501ade-e1e937@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 1dbeb030075307c5652d506be95a2186a0c22724
      https://github.com/ehb54/ultrascan3/commit/1dbeb030075307c5652d506be95a2186a0c22724
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h

  Log Message:
  -----------
  Refactor `US_Plot`: enhance double-click interactions, add zoom configuration, and improve curve/axis management with event filter.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 72c834e6d8fa6d6cd9d3b1d1eb90cc7410670c01
      https://github.com/ehb54/ultrascan3/commit/72c834e6d8fa6d6cd9d3b1d1eb90cc7410670c01
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  Add "Click Exclusion Mode" in `US_Edit` with hover tooltips and enhanced scan selection functionality.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: ced5c0cf9086f5a21a308bcb214f061a75e89aab
      https://github.com/ehb54/ultrascan3/commit/ced5c0cf9086f5a21a308bcb214f061a75e89aab
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  Add null pointer check for `plot->getZoomer()` in `US_Edit` to prevent potential crashes.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: b5607cb3d6296c0e48283cc6dd1a804c051dd8d9
      https://github.com/ehb54/ultrascan3/commit/b5607cb3d6296c0e48283cc6dd1a804c051dd8d9
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  Remove redundant state machine changes in "Click Exclusion Mode" toggle of `US_Edit`.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: d548b54d3bbac75ffbf270b99643e5cf26257968
      https://github.com/ehb54/ultrascan3/commit/d548b54d3bbac75ffbf270b99643e5cf26257968
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.h

  Log Message:
  -----------
  Initialize members in `CurveDistance` struct with default values to improve stability and prevent undefined behavior.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: f3e23f8189d66b9641b37fb2c54b38119d2ef2ec
      https://github.com/ehb54/ultrascan3/commit/f3e23f8189d66b9641b37fb2c54b38119d2ef2ec
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp

  Log Message:
  -----------
  Refactor `US_Plot`: add new double-click connections, refactor axis configuration, and enhance zoomer signal handling.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: d73cc2971816653d17d72f1785291c00b96b0c8b
      https://github.com/ehb54/ultrascan3/commit/d73cc2971816653d17d72f1785291c00b96b0c8b
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp

  Log Message:
  -----------
  Update `US_Plot::createZoomer` to adjust `US_Zoomer` constructor arguments for axis configuration.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: a54f8e2bc39c26f3e2f95dae43da15eb743e4d25
      https://github.com/ehb54/ultrascan3/commit/a54f8e2bc39c26f3e2f95dae43da15eb743e4d25
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: ffaae2039c0f2f0337ba9cde3e4667ade9f04c5c
      https://github.com/ehb54/ultrascan3/commit/ffaae2039c0f2f0337ba9cde3e4667ade9f04c5c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: f403e0ca772e609f1f064e09815e424e676e96ba
      https://github.com/ehb54/ultrascan3/commit/f403e0ca772e609f1f064e09815e424e676e96ba
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Fix methodChanged to suppress signal and reset checkboxes


  Commit: 4c73a0c1ae974bfad85180a15588c4203f772bae
      https://github.com/ehb54/ultrascan3/commit/4c73a0c1ae974bfad85180a15588c4203f772bae
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Fix typo in comment and streamline methodChanged


  Commit: 648e2c616df93b8cb3f16672c3315e44e99a1cdd
      https://github.com/ehb54/ultrascan3/commit/648e2c616df93b8cb3f16672c3315e44e99a1cdd
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_ddist_combine_all_checkbox


  Commit: 524fb756825b453194c34611c2ce7624e62f7f53
      https://github.com/ehb54/ultrascan3/commit/524fb756825b453194c34611c2ce7624e62f7f53
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: ed3ecfca235f46d9da27159afb01288bbcb42cd4
      https://github.com/ehb54/ultrascan3/commit/ed3ecfca235f46d9da27159afb01288bbcb42cd4
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_ddist_combine_all_checkbox


  Commit: 3e5bea2d6f8973b1443f2db3438bbbcfe128378f
      https://github.com/ehb54/ultrascan3/commit/3e5bea2d6f8973b1443f2db3438bbbcfe128378f
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: 447c06a32ef5ade7850e1391500673c408a9c5e4
      https://github.com/ehb54/ultrascan3/commit/447c06a32ef5ade7850e1391500673c408a9c5e4
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h

  Log Message:
  -----------
  Refactor `US_Zoomer` and `US_DoubleClickEventFilter`: enhance zoom base initialization, update rubber band/tracker pen settings, and improve double-click handling for axes and curves.


  Commit: c9f9553d1be9cca2abdbef64d64daa2688c9b977
      https://github.com/ehb54/ultrascan3/commit/c9f9553d1be9cca2abdbef64d64daa2688c9b977
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Merge pull request #390 from ehb54/lukas/us_ddist_combine_all_checkbox

Change behavior of all button in combine discrete distributions


  Commit: 50ee53da3e470361bd6a9fa94454856cc21660a1
      https://github.com/ehb54/ultrascan3/commit/50ee53da3e470361bd6a9fa94454856cc21660a1
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: c6c251770d12273ef8519ef12212ecaf90df9c8a
      https://github.com/ehb54/ultrascan3/commit/c6c251770d12273ef8519ef12212ecaf90df9c8a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  Merge pull request #388 from ehb54/lukas/us_edit_scan_exclude_click

Refactor US_Plot interactions and enhance US_Edit functionality


  Commit: aae4ac3a14f0a1c0ce391cedb1844ac845045869
      https://github.com/ehb54/ultrascan3/commit/aae4ac3a14f0a1c0ce391cedb1844ac845045869
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Change encryption finalization to decryption


  Commit: 9454cb777d85cb65835ea5eb51fc05bc18d58e78
      https://github.com/ehb54/ultrascan3/commit/9454cb777d85cb65835ea5eb51fc05bc18d58e78
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp

  Log Message:
  -----------
  Implement EncryptDecryptTest for US_Crypto

Add unit test for encryption and decryption consistency


  Commit: 2c028de85502d48e60a380c61b93dc7a7e2f7727
      https://github.com/ehb54/ultrascan3/commit/2c028de85502d48e60a380c61b93dc7a7e2f7727
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp

  Log Message:
  -----------
  Add unit test for encryption with different passwords


  Commit: b94ce34c55dd06ddc8ccfbb1239c262fe1c9cd52
      https://github.com/ehb54/ultrascan3/commit/b94ce34c55dd06ddc8ccfbb1239c262fe1c9cd52
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge pull request #395 from ehb54/lukas/us_crypto_decrypt_fix

Change encryption finalization to decryption


  Commit: e1e93704ad79bf8d43c6c4eba74a4c90b1dc1fdf
      https://github.com/ehb54/ultrascan3/commit/e1e93704ad79bf8d43c6c4eba74a4c90b1dc1fdf
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


Compare: https://github.com/ehb54/ultrascan3/compare/501adedca88f...e1e93704ad79

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From noreply at github.com  Tue Mar 17 18:45:48 2026
From: noreply at github.com (alexsav815)
Date: Tue, 17 Mar 2026 17:45:48 -0700
Subject: [us-commits] [ehb54/ultrascan3] 844f03: GMP: Report -- test
 inclusion of the replica group...
Message-ID: <ehb54/ultrascan3/push/refs/heads/main/b94ce3-ce7a1d@github.com>

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 844f0378f9d93d9976788b58bd853ff5baafd865
      https://github.com/ehb54/ultrascan3/commit/844f0378f9d93d9976788b58bd853ff5baafd865
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: ef226636cf28fac5f0b62c8cc7535c518336f7cd
      https://github.com/ehb54/ultrascan3/commit/ef226636cf28fac5f0b62c8cc7535c518336f7cd
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [1]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: 008ab8725529f70ff36e4845202c893ddb0e4213
      https://github.com/ehb54/ultrascan3/commit/008ab8725529f70ff36e4845202c893ddb0e4213
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [2]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: cee06353e7b931a3f580d1bffbeb9f2326d63532
      https://github.com/ehb54/ultrascan3/commit/cee06353e7b931a3f580d1bffbeb9f2326d63532
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [3]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: 5d9bc472d7f67b7cc2de87cfa943d8db9b3bc1c5
      https://github.com/ehb54/ultrascan3/commit/5d9bc472d7f67b7cc2de87cfa943d8db9b3bc1c5
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [4]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: a73d1f0d1b712c4345cbd63219466ef87ccabfdb
      https://github.com/ehb54/ultrascan3/commit/a73d1f0d1b712c4345cbd63219466ef87ccabfdb
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [5]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: 28dafe4f6fe91d2a19d25a13dca2a9700c8524c1
      https://github.com/ehb54/ultrascan3/commit/28dafe4f6fe91d2a19d25a13dca2a9700c8524c1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  [6]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: 88e5262aa244a552236f70eb1b00274e245d2f90
      https://github.com/ehb54/ultrascan3/commit/88e5262aa244a552236f70eb1b00274e245d2f90
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [6a]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...ush


  Commit: 5e19ef3b84e9f0542544c16ad99f1909133b6197
      https://github.com/ehb54/ultrascan3/commit/5e19ef3b84e9f0542544c16ad99f1909133b6197
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [6b]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...ush


  Commit: cfd2bf22ab1f023d0f1bf0c3677f13218d99b4e3
      https://github.com/ehb54/ultrascan3/commit/cfd2bf22ab1f023d0f1bf0c3677f13218d99b4e3
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_config/us_admin.cpp
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge pull request #393 from ehb54/main

Merge main into alexey-dev-issue785


  Commit: e163509a00c5876ac83d78f14c8a969dae251b75
      https://github.com/ehb54/ultrascan3/commit/e163509a00c5876ac83d78f14c8a969dae251b75
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue785


  Commit: ce7a1d14ace3b2d645b17aeab7be4f3fb881ff7b
      https://github.com/ehb54/ultrascan3/commit/ce7a1d14ace3b2d645b17aeab7be4f3fb881ff7b
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  Merge pull request #394 from ehb54/alexey-dev-issue785

Alexey dev issue785: Show sigle-channel-replica group info in the Average over Replicas Section of the Report


Compare: https://github.com/ehb54/ultrascan3/compare/b94ce34c55dd...ce7a1d14ace3

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From noreply at github.com  Tue Mar 17 18:46:20 2026
From: noreply at github.com (alexsav815)
Date: Tue, 17 Mar 2026 17:46:20 -0700
Subject: [us-commits] [ehb54/ultrascan3] 844f03: GMP: Report -- test
 inclusion of the replica group...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue791/d6c8bb-e65798@github.com>

  Branch: refs/heads/alexey-dev-issue791
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 844f0378f9d93d9976788b58bd853ff5baafd865
      https://github.com/ehb54/ultrascan3/commit/844f0378f9d93d9976788b58bd853ff5baafd865
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: ef226636cf28fac5f0b62c8cc7535c518336f7cd
      https://github.com/ehb54/ultrascan3/commit/ef226636cf28fac5f0b62c8cc7535c518336f7cd
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [1]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: 008ab8725529f70ff36e4845202c893ddb0e4213
      https://github.com/ehb54/ultrascan3/commit/008ab8725529f70ff36e4845202c893ddb0e4213
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [2]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: cee06353e7b931a3f580d1bffbeb9f2326d63532
      https://github.com/ehb54/ultrascan3/commit/cee06353e7b931a3f580d1bffbeb9f2326d63532
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [3]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: 5d9bc472d7f67b7cc2de87cfa943d8db9b3bc1c5
      https://github.com/ehb54/ultrascan3/commit/5d9bc472d7f67b7cc2de87cfa943d8db9b3bc1c5
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [4]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: a73d1f0d1b712c4345cbd63219466ef87ccabfdb
      https://github.com/ehb54/ultrascan3/commit/a73d1f0d1b712c4345cbd63219466ef87ccabfdb
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [5]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: 28dafe4f6fe91d2a19d25a13dca2a9700c8524c1
      https://github.com/ehb54/ultrascan3/commit/28dafe4f6fe91d2a19d25a13dca2a9700c8524c1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  [6]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: 88e5262aa244a552236f70eb1b00274e245d2f90
      https://github.com/ehb54/ultrascan3/commit/88e5262aa244a552236f70eb1b00274e245d2f90
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [6a]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...ush


  Commit: 5e19ef3b84e9f0542544c16ad99f1909133b6197
      https://github.com/ehb54/ultrascan3/commit/5e19ef3b84e9f0542544c16ad99f1909133b6197
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [6b]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...ush


  Commit: cfd2bf22ab1f023d0f1bf0c3677f13218d99b4e3
      https://github.com/ehb54/ultrascan3/commit/cfd2bf22ab1f023d0f1bf0c3677f13218d99b4e3
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_config/us_admin.cpp
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge pull request #393 from ehb54/main

Merge main into alexey-dev-issue785


  Commit: e163509a00c5876ac83d78f14c8a969dae251b75
      https://github.com/ehb54/ultrascan3/commit/e163509a00c5876ac83d78f14c8a969dae251b75
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue785


  Commit: ce7a1d14ace3b2d645b17aeab7be4f3fb881ff7b
      https://github.com/ehb54/ultrascan3/commit/ce7a1d14ace3b2d645b17aeab7be4f3fb881ff7b
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  Merge pull request #394 from ehb54/alexey-dev-issue785

Alexey dev issue785: Show sigle-channel-replica group info in the Average over Replicas Section of the Report


  Commit: e6579802fd032cde1c91863e8af0b2885d936062
      https://github.com/ehb54/ultrascan3/commit/e6579802fd032cde1c91863e8af0b2885d936062
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue791


Compare: https://github.com/ehb54/ultrascan3/compare/d6c8bb86eb4e...e6579802fd03

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From noreply at github.com  Wed Mar 18 09:08:47 2026
From: noreply at github.com (Saeed Mortezazadeh)
Date: Wed, 18 Mar 2026 08:08:47 -0700
Subject: [us-commits] [ehb54/ultrascan3] d0f42e: us_spectrum: removed
 unnecessary widgets
Message-ID: <ehb54/ultrascan3/push/refs/heads/main/ce7a1d-563c55@github.com>

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/ultrascan3
  Commit: d0f42eef0df776ad01ea51cc7505eeb80878b2d8
      https://github.com/ehb54/ultrascan3/commit/d0f42eef0df776ad01ea51cc7505eeb80878b2d8
  Author: Saeed <github.com/samo38>
  Date:   2026-02-23 (Mon, 23 Feb 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: removed unnecessary widgets


  Commit: 98c5f9693e9265ed8f1515603098010def86eb70
      https://github.com/ehb54/ultrascan3/commit/98c5f9693e9265ed8f1515603098010def86eb70
  Author: Saeed <github.com/samo38>
  Date:   2026-02-24 (Tue, 24 Feb 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  rename labels


  Commit: 8c545d6f5c77a42afc10d3badcaa8f9b34866f2d
      https://github.com/ehb54/ultrascan3/commit/8c545d6f5c77a42afc10d3badcaa8f9b34866f2d
  Author: Saeed <github.com/samo38>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    R admin/cmake/toolchain-macos.cmake
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M gui/us_report_gui.cpp
    M programs/us/CMakeLists.txt
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    R vcpkg
    M vcpkg.json

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_748


  Commit: 5ee4575063fb99b0b70eb335bc0d88e3a903b857
      https://github.com/ehb54/ultrascan3/commit/5ee4575063fb99b0b70eb335bc0d88e3a903b857
  Author: Saeed <github.com/samo38>
  Date:   2026-03-03 (Tue, 03 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: update GUI and DataProfile


  Commit: d864a615e96c4dd2c66a738120c35c6eb556d647
      https://github.com/ehb54/ultrascan3/commit/d864a615e96c4dd2c66a738120c35c6eb556d647
  Author: Saeed <github.com/samo38>
  Date:   2026-03-03 (Tue, 03 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: use minmax


  Commit: 644141ae003ec988b86eb7b01c1e21cf208b0dac
      https://github.com/ehb54/ultrascan3/commit/644141ae003ec988b86eb7b01c1e21cf208b0dac
  Author: Saeed <github.com/samo38>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M gui/us_spectrodata.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_748


  Commit: 2fcc6637f35ea3ab3c8e1450a06b60932d033f1b
      https://github.com/ehb54/ultrascan3/commit/2fcc6637f35ea3ab3c8e1450a06b60932d033f1b
  Author: Saeed <samo38:github>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: update


  Commit: 41a6910c567f5d60a14f6a802af0a1134eef03c4
      https://github.com/ehb54/ultrascan3/commit/41a6910c567f5d60a14f6a802af0a1134eef03c4
  Author: Saeed <samo38:github>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  add argsort and sort functions


  Commit: dd6f8d6767fa98ae4f35d21e7e5411f7f1f1eb17
      https://github.com/ehb54/ultrascan3/commit/dd6f8d6767fa98ae4f35d21e7e5411f7f1f1eb17
  Author: Saeed <samo38:github>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  use Microsoft format, add overlap function


  Commit: 97cbb1a37275a33ef389b6fc7c2132ed4aaf52f4
      https://github.com/ehb54/ultrascan3/commit/97cbb1a37275a33ef389b6fc7c2132ed4aaf52f4
  Author: Saeed <samo38:github>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: large updates


  Commit: 15ea3878148a0987efd94cdedb07b9e3db570cfd
      https://github.com/ehb54/ultrascan3/commit/15ea3878148a0987efd94cdedb07b9e3db570cfd
  Author: Saeed <samo38:github>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  finish the fit function


  Commit: 1c6be507a58b5e30438f1565b772e544ee297d86
      https://github.com/ehb54/ultrascan3/commit/1c6be507a58b5e30438f1565b772e544ee297d86
  Author: Saeed <samo38:github>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  improve find_lambda function


  Commit: 12ffcd24c66797e3e2d49303bce6232cc9c13d7c
      https://github.com/ehb54/ultrascan3/commit/12ffcd24c66797e3e2d49303bce6232cc9c13d7c
  Author: Saeed <github.com/samo38>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: finilized the widget


  Commit: 21473e24e6f59d7d4edaba9f4ea29e1174a8f579
      https://github.com/ehb54/ultrascan3/commit/21473e24e6f59d7d4edaba9f4ea29e1174a8f579
  Author: Saeed <github.com/samo38>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp

  Log Message:
  -----------
  reformat some lines


  Commit: 55d03f81788bc585236ce0b642d89abc3293ad3a
      https://github.com/ehb54/ultrascan3/commit/55d03f81788bc585236ce0b642d89abc3293ad3a
  Author: Saeed <github.com/samo38>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M test/utils/test_us_time_state.cpp
    M utils/libus_utils.pro
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_748


  Commit: c3dd2ab6d66893c243fe40ba02010696a7b78d52
      https://github.com/ehb54/ultrascan3/commit/c3dd2ab6d66893c243fe40ba02010696a7b78d52
  Author: Saeed <github.com/samo38>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  reformat comments


  Commit: 74f3ba1cd3b6646dce0b4638c98b2707dff60f2e
      https://github.com/ehb54/ultrascan3/commit/74f3ba1cd3b6646dce0b4638c98b2707dff60f2e
  Author: Saeed <github.com/samo38>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum.h: removed us_math2.h


  Commit: 5304d85db5ed89082fe2cf86d0fd9f3f3fbd65c3
      https://github.com/ehb54/ultrascan3/commit/5304d85db5ed89082fe2cf86d0fd9f3f3fbd65c3
  Author: Saeed <github.com/samo38>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M gui/us_plot3d.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_config/us_admin.cpp
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  merge upstream/main , resolved conflicts


  Commit: 8ba4b05b7f14586d7e527145ba6c464fd3dc3e4d
      https://github.com/ehb54/ultrascan3/commit/8ba4b05b7f14586d7e527145ba6c464fd3dc3e4d
  Author: Saeed <github.com/samo38>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  add wavelength limit picker, add checkbox for db loadings


  Commit: efd337809634d3a364046f3a040862ce1b2a81f4
      https://github.com/ehb54/ultrascan3/commit/efd337809634d3a364046f3a040862ce1b2a81f4
  Author: Saeed <github.com/samo38>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_748


  Commit: d0eb3d3a8f27a33f4dc6b857f1a2ddcb6c52af5d
      https://github.com/ehb54/ultrascan3/commit/d0eb3d3a8f27a33f4dc6b857f1a2ddcb6c52af5d
  Author: Saeed <github.com/samo38>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_748


  Commit: 563c55a8a0ccb209a43dc363ec87842b0f4d6489
      https://github.com/ehb54/ultrascan3/commit/563c55a8a0ccb209a43dc363ec87842b0f4d6489
  Author: Saeed Mortezazadeh <49119048+samo38 at users.noreply.github.com>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge pull request #387 from samo38/ticket_748

Ticket 748: Enhance Spectrum Decomposition GUI and functionality


Compare: https://github.com/ehb54/ultrascan3/compare/ce7a1d14ace3...563c55a8a0cc

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From noreply at github.com  Wed Mar 18 13:43:58 2026
From: noreply at github.com (alexsav815)
Date: Wed, 18 Mar 2026 12:43:58 -0700
Subject: [us-commits] [ehb54/ultrascan3] d0f42e: us_spectrum: removed
 unnecessary widgets
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue791/e65798-3fef02@github.com>

  Branch: refs/heads/alexey-dev-issue791
  Home:   https://github.com/ehb54/ultrascan3
  Commit: d0f42eef0df776ad01ea51cc7505eeb80878b2d8
      https://github.com/ehb54/ultrascan3/commit/d0f42eef0df776ad01ea51cc7505eeb80878b2d8
  Author: Saeed <github.com/samo38>
  Date:   2026-02-23 (Mon, 23 Feb 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: removed unnecessary widgets


  Commit: 98c5f9693e9265ed8f1515603098010def86eb70
      https://github.com/ehb54/ultrascan3/commit/98c5f9693e9265ed8f1515603098010def86eb70
  Author: Saeed <github.com/samo38>
  Date:   2026-02-24 (Tue, 24 Feb 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  rename labels


  Commit: 8c545d6f5c77a42afc10d3badcaa8f9b34866f2d
      https://github.com/ehb54/ultrascan3/commit/8c545d6f5c77a42afc10d3badcaa8f9b34866f2d
  Author: Saeed <github.com/samo38>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    R admin/cmake/toolchain-macos.cmake
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M gui/us_report_gui.cpp
    M programs/us/CMakeLists.txt
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    R vcpkg
    M vcpkg.json

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_748


  Commit: 5ee4575063fb99b0b70eb335bc0d88e3a903b857
      https://github.com/ehb54/ultrascan3/commit/5ee4575063fb99b0b70eb335bc0d88e3a903b857
  Author: Saeed <github.com/samo38>
  Date:   2026-03-03 (Tue, 03 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: update GUI and DataProfile


  Commit: d864a615e96c4dd2c66a738120c35c6eb556d647
      https://github.com/ehb54/ultrascan3/commit/d864a615e96c4dd2c66a738120c35c6eb556d647
  Author: Saeed <github.com/samo38>
  Date:   2026-03-03 (Tue, 03 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: use minmax


  Commit: 644141ae003ec988b86eb7b01c1e21cf208b0dac
      https://github.com/ehb54/ultrascan3/commit/644141ae003ec988b86eb7b01c1e21cf208b0dac
  Author: Saeed <github.com/samo38>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M gui/us_spectrodata.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_748


  Commit: 2fcc6637f35ea3ab3c8e1450a06b60932d033f1b
      https://github.com/ehb54/ultrascan3/commit/2fcc6637f35ea3ab3c8e1450a06b60932d033f1b
  Author: Saeed <samo38:github>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: update


  Commit: 41a6910c567f5d60a14f6a802af0a1134eef03c4
      https://github.com/ehb54/ultrascan3/commit/41a6910c567f5d60a14f6a802af0a1134eef03c4
  Author: Saeed <samo38:github>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  add argsort and sort functions


  Commit: dd6f8d6767fa98ae4f35d21e7e5411f7f1f1eb17
      https://github.com/ehb54/ultrascan3/commit/dd6f8d6767fa98ae4f35d21e7e5411f7f1f1eb17
  Author: Saeed <samo38:github>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  use Microsoft format, add overlap function


  Commit: 97cbb1a37275a33ef389b6fc7c2132ed4aaf52f4
      https://github.com/ehb54/ultrascan3/commit/97cbb1a37275a33ef389b6fc7c2132ed4aaf52f4
  Author: Saeed <samo38:github>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: large updates


  Commit: 15ea3878148a0987efd94cdedb07b9e3db570cfd
      https://github.com/ehb54/ultrascan3/commit/15ea3878148a0987efd94cdedb07b9e3db570cfd
  Author: Saeed <samo38:github>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  finish the fit function


  Commit: 1c6be507a58b5e30438f1565b772e544ee297d86
      https://github.com/ehb54/ultrascan3/commit/1c6be507a58b5e30438f1565b772e544ee297d86
  Author: Saeed <samo38:github>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  improve find_lambda function


  Commit: 12ffcd24c66797e3e2d49303bce6232cc9c13d7c
      https://github.com/ehb54/ultrascan3/commit/12ffcd24c66797e3e2d49303bce6232cc9c13d7c
  Author: Saeed <github.com/samo38>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: finilized the widget


  Commit: 21473e24e6f59d7d4edaba9f4ea29e1174a8f579
      https://github.com/ehb54/ultrascan3/commit/21473e24e6f59d7d4edaba9f4ea29e1174a8f579
  Author: Saeed <github.com/samo38>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp

  Log Message:
  -----------
  reformat some lines


  Commit: 55d03f81788bc585236ce0b642d89abc3293ad3a
      https://github.com/ehb54/ultrascan3/commit/55d03f81788bc585236ce0b642d89abc3293ad3a
  Author: Saeed <github.com/samo38>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M test/utils/test_us_time_state.cpp
    M utils/libus_utils.pro
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_748


  Commit: c3dd2ab6d66893c243fe40ba02010696a7b78d52
      https://github.com/ehb54/ultrascan3/commit/c3dd2ab6d66893c243fe40ba02010696a7b78d52
  Author: Saeed <github.com/samo38>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  reformat comments


  Commit: 74f3ba1cd3b6646dce0b4638c98b2707dff60f2e
      https://github.com/ehb54/ultrascan3/commit/74f3ba1cd3b6646dce0b4638c98b2707dff60f2e
  Author: Saeed <github.com/samo38>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum.h: removed us_math2.h


  Commit: 5304d85db5ed89082fe2cf86d0fd9f3f3fbd65c3
      https://github.com/ehb54/ultrascan3/commit/5304d85db5ed89082fe2cf86d0fd9f3f3fbd65c3
  Author: Saeed <github.com/samo38>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M gui/us_plot3d.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_config/us_admin.cpp
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  merge upstream/main , resolved conflicts


  Commit: 8ba4b05b7f14586d7e527145ba6c464fd3dc3e4d
      https://github.com/ehb54/ultrascan3/commit/8ba4b05b7f14586d7e527145ba6c464fd3dc3e4d
  Author: Saeed <github.com/samo38>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  add wavelength limit picker, add checkbox for db loadings


  Commit: efd337809634d3a364046f3a040862ce1b2a81f4
      https://github.com/ehb54/ultrascan3/commit/efd337809634d3a364046f3a040862ce1b2a81f4
  Author: Saeed <github.com/samo38>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_748


  Commit: d0eb3d3a8f27a33f4dc6b857f1a2ddcb6c52af5d
      https://github.com/ehb54/ultrascan3/commit/d0eb3d3a8f27a33f4dc6b857f1a2ddcb6c52af5d
  Author: Saeed <github.com/samo38>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_748


  Commit: 563c55a8a0ccb209a43dc363ec87842b0f4d6489
      https://github.com/ehb54/ultrascan3/commit/563c55a8a0ccb209a43dc363ec87842b0f4d6489
  Author: Saeed Mortezazadeh <49119048+samo38 at users.noreply.github.com>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge pull request #387 from samo38/ticket_748

Ticket 748: Enhance Spectrum Decomposition GUI and functionality


  Commit: 3fef021d4fad55bc1bb07521af0bff3e7ac12095
      https://github.com/ehb54/ultrascan3/commit/3fef021d4fad55bc1bb07521af0bff3e7ac12095
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue791


Compare: https://github.com/ehb54/ultrascan3/compare/e6579802fd03...3fef021d4fad

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From noreply at github.com  Wed Mar 18 14:53:21 2026
From: noreply at github.com (alexsav815)
Date: Wed, 18 Mar 2026 13:53:21 -0700
Subject: [us-commits] [ehb54/ultrascan3] ac1ca1: GMP-ABDE: Ranges & Upload
 check for ext. profiles ...
Message-ID: <ehb54/ultrascan3/push/refs/heads/main/563c55-cb1925@github.com>

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/ultrascan3
  Commit: ac1ca1f8183d056ed7e98541ac5ac52d725b33f8
      https://github.com/ehb54/ultrascan3/commit/ac1ca1f8183d056ed7e98541ac5ac52d725b33f8
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h

  Log Message:
  -----------
  GMP-ABDE: Ranges & Upload check for ext. profiles -- while situations when extinction profiles for one or more analytes do not cover all wvls in Ranges are caught, the message is misleading and does not provide a hint for inability to proceed; capture exact message at the stage of living 7. Ranges panel & pass to Upload tab before enabling run submission...


  Commit: d6c8bb86eb4e77d526599971c15a35328a4927d8
      https://github.com/ehb54/ultrascan3/commit/d6c8bb86eb4e77d526599971c15a35328a4927d8
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue791


  Commit: e6579802fd032cde1c91863e8af0b2885d936062
      https://github.com/ehb54/ultrascan3/commit/e6579802fd032cde1c91863e8af0b2885d936062
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue791


  Commit: 3fef021d4fad55bc1bb07521af0bff3e7ac12095
      https://github.com/ehb54/ultrascan3/commit/3fef021d4fad55bc1bb07521af0bff3e7ac12095
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue791


  Commit: cb192562f44149651f3157090d395a05f79da39e
      https://github.com/ehb54/ultrascan3/commit/cb192562f44149651f3157090d395a05f79da39e
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h

  Log Message:
  -----------
  Merge pull request #396 from ehb54/alexey-dev-issue791

GMP-ABDE: Ranges & Upload check for ext. profiles -- while situations?


Compare: https://github.com/ehb54/ultrascan3/compare/563c55a8a0cc...cb192562f441

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From noreply at github.com  Wed Mar 18 14:59:51 2026
From: noreply at github.com (alexsav815)
Date: Wed, 18 Mar 2026 13:59:51 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue792/000000-cb1925@github.com>

  Branch: refs/heads/alexey-dev-issue792
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Wed Mar 18 15:40:33 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 18 Mar 2026 14:40:33 -0700
Subject: [us-commits] [ehb54/us3lims_newinst]
Message-ID: <ehb54/us3lims_newinst/push/refs/heads/793-request-remove-from-lims-webmaster-partners/000000-c9e9fa@github.com>

  Branch: refs/heads/793-request-remove-from-lims-webmaster-partners
  Home:   https://github.com/ehb54/us3lims_newinst

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From noreply at github.com  Wed Mar 18 15:42:54 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 18 Mar 2026 14:42:54 -0700
Subject: [us-commits] [ehb54/us3lims_dbinst]
Message-ID: <ehb54/us3lims_dbinst/push/refs/heads/793-request-remove-from-lims-webmaster-partners/000000-c6fdc6@github.com>

  Branch: refs/heads/793-request-remove-from-lims-webmaster-partners
  Home:   https://github.com/ehb54/us3lims_dbinst

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From noreply at github.com  Wed Mar 18 15:43:49 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 18 Mar 2026 14:43:49 -0700
Subject: [us-commits] [ehb54/us3lims_webinfo]
Message-ID: <ehb54/us3lims_webinfo/push/refs/heads/793-request-remove-from-lims-webmaster-partners/000000-dbe784@github.com>

  Branch: refs/heads/793-request-remove-from-lims-webmaster-partners
  Home:   https://github.com/ehb54/us3lims_webinfo

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From noreply at github.com  Wed Mar 18 15:44:42 2026
From: noreply at github.com (aaron-auc)
Date: Wed, 18 Mar 2026 14:44:42 -0700
Subject: [us-commits] [ehb54/us3lims_common]
Message-ID: <ehb54/us3lims_common/push/refs/heads/793-request-remove-from-lims-webmaster-partners/000000-1b7304@github.com>

  Branch: refs/heads/793-request-remove-from-lims-webmaster-partners
  Home:   https://github.com/ehb54/us3lims_common

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From noreply at github.com  Wed Mar 18 18:36:19 2026
From: noreply at github.com (alexsav815)
Date: Wed, 18 Mar 2026 17:36:19 -0700
Subject: [us-commits] [ehb54/ultrascan3] b1fbfb: GMP-dataDisk -- enable
 centerpiece selection in Ce...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue792/cb1925-b1fbfb@github.com>

  Branch: refs/heads/alexey-dev-issue792
  Home:   https://github.com/ehb54/ultrascan3
  Commit: b1fbfbcbd47cd296b70ccd6ac9178c4efd6b4a4e
      https://github.com/ehb54/ultrascan3/commit/b1fbfbcbd47cd296b70ccd6ac9178c4efd6b4a4e
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h

  Log Message:
  -----------
  GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk...



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From noreply at github.com  Wed Mar 18 18:52:48 2026
From: noreply at github.com (alexsav815)
Date: Wed, 18 Mar 2026 17:52:48 -0700
Subject: [us-commits] [ehb54/ultrascan3] a3b6b6: [1]GMP-dataDisk -- enable
 centerpiece selection in...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue792/b1fbfb-a3b6b6@github.com>

  Branch: refs/heads/alexey-dev-issue792
  Home:   https://github.com/ehb54/ultrascan3
  Commit: a3b6b6a58f4f1d94a9268cc04a014d3ce1a1471e
      https://github.com/ehb54/ultrascan3/commit/a3b6b6a58f4f1d94a9268cc04a014d3ce1a1471e
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp

  Log Message:
  -----------
  [1]GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk...



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From noreply at github.com  Wed Mar 18 19:06:10 2026
From: noreply at github.com (alexsav815)
Date: Wed, 18 Mar 2026 18:06:10 -0700
Subject: [us-commits] [ehb54/ultrascan3] 992f15: [2]GMP-dataDisk -- enable
 centerpiece selection in...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue792/a3b6b6-992f15@github.com>

  Branch: refs/heads/alexey-dev-issue792
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 992f15191ea67cf8c4dc85736429ab5939967d2f
      https://github.com/ehb54/ultrascan3/commit/992f15191ea67cf8c4dc85736429ab5939967d2f
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp

  Log Message:
  -----------
  [2]GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk...



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From noreply at github.com  Wed Mar 18 19:15:54 2026
From: noreply at github.com (alexsav815)
Date: Wed, 18 Mar 2026 18:15:54 -0700
Subject: [us-commits] [ehb54/ultrascan3] 50c4d0: [3]GMP-dataDisk -- enable
 centerpiece selection in...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue792/992f15-50c4d0@github.com>

  Branch: refs/heads/alexey-dev-issue792
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 50c4d0f4452a8f5f8052b4e63ae06abb11f8fe89
      https://github.com/ehb54/ultrascan3/commit/50c4d0f4452a8f5f8052b4e63ae06abb11f8fe89
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp

  Log Message:
  -----------
  [3]GMP-dataDisk -- enable centerpiece selection in Cells if dataDisk...



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From noreply at github.com  Thu Mar 19 10:08:42 2026
From: noreply at github.com (aaron-auc)
Date: Thu, 19 Mar 2026 09:08:42 -0700
Subject: [us-commits] [ehb54/ultrascan3] d0f42e: us_spectrum: removed
 unnecessary widgets
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/e1e937-81695e@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: d0f42eef0df776ad01ea51cc7505eeb80878b2d8
      https://github.com/ehb54/ultrascan3/commit/d0f42eef0df776ad01ea51cc7505eeb80878b2d8
  Author: Saeed <github.com/samo38>
  Date:   2026-02-23 (Mon, 23 Feb 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: removed unnecessary widgets


  Commit: 98c5f9693e9265ed8f1515603098010def86eb70
      https://github.com/ehb54/ultrascan3/commit/98c5f9693e9265ed8f1515603098010def86eb70
  Author: Saeed <github.com/samo38>
  Date:   2026-02-24 (Tue, 24 Feb 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  rename labels


  Commit: 8c545d6f5c77a42afc10d3badcaa8f9b34866f2d
      https://github.com/ehb54/ultrascan3/commit/8c545d6f5c77a42afc10d3badcaa8f9b34866f2d
  Author: Saeed <github.com/samo38>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    R admin/cmake/toolchain-macos.cmake
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M gui/us_report_gui.cpp
    M programs/us/CMakeLists.txt
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    R vcpkg
    M vcpkg.json

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_748


  Commit: 5ee4575063fb99b0b70eb335bc0d88e3a903b857
      https://github.com/ehb54/ultrascan3/commit/5ee4575063fb99b0b70eb335bc0d88e3a903b857
  Author: Saeed <github.com/samo38>
  Date:   2026-03-03 (Tue, 03 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: update GUI and DataProfile


  Commit: d864a615e96c4dd2c66a738120c35c6eb556d647
      https://github.com/ehb54/ultrascan3/commit/d864a615e96c4dd2c66a738120c35c6eb556d647
  Author: Saeed <github.com/samo38>
  Date:   2026-03-03 (Tue, 03 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: use minmax


  Commit: 644141ae003ec988b86eb7b01c1e21cf208b0dac
      https://github.com/ehb54/ultrascan3/commit/644141ae003ec988b86eb7b01c1e21cf208b0dac
  Author: Saeed <github.com/samo38>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M gui/us_spectrodata.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_748


  Commit: 2fcc6637f35ea3ab3c8e1450a06b60932d033f1b
      https://github.com/ehb54/ultrascan3/commit/2fcc6637f35ea3ab3c8e1450a06b60932d033f1b
  Author: Saeed <samo38:github>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: update


  Commit: 41a6910c567f5d60a14f6a802af0a1134eef03c4
      https://github.com/ehb54/ultrascan3/commit/41a6910c567f5d60a14f6a802af0a1134eef03c4
  Author: Saeed <samo38:github>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  add argsort and sort functions


  Commit: dd6f8d6767fa98ae4f35d21e7e5411f7f1f1eb17
      https://github.com/ehb54/ultrascan3/commit/dd6f8d6767fa98ae4f35d21e7e5411f7f1f1eb17
  Author: Saeed <samo38:github>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  use Microsoft format, add overlap function


  Commit: 97cbb1a37275a33ef389b6fc7c2132ed4aaf52f4
      https://github.com/ehb54/ultrascan3/commit/97cbb1a37275a33ef389b6fc7c2132ed4aaf52f4
  Author: Saeed <samo38:github>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: large updates


  Commit: 15ea3878148a0987efd94cdedb07b9e3db570cfd
      https://github.com/ehb54/ultrascan3/commit/15ea3878148a0987efd94cdedb07b9e3db570cfd
  Author: Saeed <samo38:github>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  finish the fit function


  Commit: 1c6be507a58b5e30438f1565b772e544ee297d86
      https://github.com/ehb54/ultrascan3/commit/1c6be507a58b5e30438f1565b772e544ee297d86
  Author: Saeed <samo38:github>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  improve find_lambda function


  Commit: 12ffcd24c66797e3e2d49303bce6232cc9c13d7c
      https://github.com/ehb54/ultrascan3/commit/12ffcd24c66797e3e2d49303bce6232cc9c13d7c
  Author: Saeed <github.com/samo38>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: finilized the widget


  Commit: 21473e24e6f59d7d4edaba9f4ea29e1174a8f579
      https://github.com/ehb54/ultrascan3/commit/21473e24e6f59d7d4edaba9f4ea29e1174a8f579
  Author: Saeed <github.com/samo38>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp

  Log Message:
  -----------
  reformat some lines


  Commit: 55d03f81788bc585236ce0b642d89abc3293ad3a
      https://github.com/ehb54/ultrascan3/commit/55d03f81788bc585236ce0b642d89abc3293ad3a
  Author: Saeed <github.com/samo38>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M test/utils/test_us_time_state.cpp
    M utils/libus_utils.pro
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_748


  Commit: c3dd2ab6d66893c243fe40ba02010696a7b78d52
      https://github.com/ehb54/ultrascan3/commit/c3dd2ab6d66893c243fe40ba02010696a7b78d52
  Author: Saeed <github.com/samo38>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  reformat comments


  Commit: 74f3ba1cd3b6646dce0b4638c98b2707dff60f2e
      https://github.com/ehb54/ultrascan3/commit/74f3ba1cd3b6646dce0b4638c98b2707dff60f2e
  Author: Saeed <github.com/samo38>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum.h: removed us_math2.h


  Commit: 844f0378f9d93d9976788b58bd853ff5baafd865
      https://github.com/ehb54/ultrascan3/commit/844f0378f9d93d9976788b58bd853ff5baafd865
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: ef226636cf28fac5f0b62c8cc7535c518336f7cd
      https://github.com/ehb54/ultrascan3/commit/ef226636cf28fac5f0b62c8cc7535c518336f7cd
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [1]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: 008ab8725529f70ff36e4845202c893ddb0e4213
      https://github.com/ehb54/ultrascan3/commit/008ab8725529f70ff36e4845202c893ddb0e4213
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [2]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: cee06353e7b931a3f580d1bffbeb9f2326d63532
      https://github.com/ehb54/ultrascan3/commit/cee06353e7b931a3f580d1bffbeb9f2326d63532
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [3]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: 5d9bc472d7f67b7cc2de87cfa943d8db9b3bc1c5
      https://github.com/ehb54/ultrascan3/commit/5d9bc472d7f67b7cc2de87cfa943d8db9b3bc1c5
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [4]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: a73d1f0d1b712c4345cbd63219466ef87ccabfdb
      https://github.com/ehb54/ultrascan3/commit/a73d1f0d1b712c4345cbd63219466ef87ccabfdb
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [5]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: 28dafe4f6fe91d2a19d25a13dca2a9700c8524c1
      https://github.com/ehb54/ultrascan3/commit/28dafe4f6fe91d2a19d25a13dca2a9700c8524c1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  [6]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: 88e5262aa244a552236f70eb1b00274e245d2f90
      https://github.com/ehb54/ultrascan3/commit/88e5262aa244a552236f70eb1b00274e245d2f90
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [6a]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...ush


  Commit: 5e19ef3b84e9f0542544c16ad99f1909133b6197
      https://github.com/ehb54/ultrascan3/commit/5e19ef3b84e9f0542544c16ad99f1909133b6197
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [6b]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...ush


  Commit: cfd2bf22ab1f023d0f1bf0c3677f13218d99b4e3
      https://github.com/ehb54/ultrascan3/commit/cfd2bf22ab1f023d0f1bf0c3677f13218d99b4e3
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_config/us_admin.cpp
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge pull request #393 from ehb54/main

Merge main into alexey-dev-issue785


  Commit: 5304d85db5ed89082fe2cf86d0fd9f3f3fbd65c3
      https://github.com/ehb54/ultrascan3/commit/5304d85db5ed89082fe2cf86d0fd9f3f3fbd65c3
  Author: Saeed <github.com/samo38>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M gui/us_plot3d.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_config/us_admin.cpp
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  merge upstream/main , resolved conflicts


  Commit: ac1ca1f8183d056ed7e98541ac5ac52d725b33f8
      https://github.com/ehb54/ultrascan3/commit/ac1ca1f8183d056ed7e98541ac5ac52d725b33f8
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h

  Log Message:
  -----------
  GMP-ABDE: Ranges & Upload check for ext. profiles -- while situations when extinction profiles for one or more analytes do not cover all wvls in Ranges are caught, the message is misleading and does not provide a hint for inability to proceed; capture exact message at the stage of living 7. Ranges panel & pass to Upload tab before enabling run submission...


  Commit: 8ba4b05b7f14586d7e527145ba6c464fd3dc3e4d
      https://github.com/ehb54/ultrascan3/commit/8ba4b05b7f14586d7e527145ba6c464fd3dc3e4d
  Author: Saeed <github.com/samo38>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  add wavelength limit picker, add checkbox for db loadings


  Commit: efd337809634d3a364046f3a040862ce1b2a81f4
      https://github.com/ehb54/ultrascan3/commit/efd337809634d3a364046f3a040862ce1b2a81f4
  Author: Saeed <github.com/samo38>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_748


  Commit: d6c8bb86eb4e77d526599971c15a35328a4927d8
      https://github.com/ehb54/ultrascan3/commit/d6c8bb86eb4e77d526599971c15a35328a4927d8
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue791


  Commit: e163509a00c5876ac83d78f14c8a969dae251b75
      https://github.com/ehb54/ultrascan3/commit/e163509a00c5876ac83d78f14c8a969dae251b75
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue785


  Commit: ce7a1d14ace3b2d645b17aeab7be4f3fb881ff7b
      https://github.com/ehb54/ultrascan3/commit/ce7a1d14ace3b2d645b17aeab7be4f3fb881ff7b
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  Merge pull request #394 from ehb54/alexey-dev-issue785

Alexey dev issue785: Show sigle-channel-replica group info in the Average over Replicas Section of the Report


  Commit: e6579802fd032cde1c91863e8af0b2885d936062
      https://github.com/ehb54/ultrascan3/commit/e6579802fd032cde1c91863e8af0b2885d936062
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue791


  Commit: d0eb3d3a8f27a33f4dc6b857f1a2ddcb6c52af5d
      https://github.com/ehb54/ultrascan3/commit/d0eb3d3a8f27a33f4dc6b857f1a2ddcb6c52af5d
  Author: Saeed <github.com/samo38>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_748


  Commit: 563c55a8a0ccb209a43dc363ec87842b0f4d6489
      https://github.com/ehb54/ultrascan3/commit/563c55a8a0ccb209a43dc363ec87842b0f4d6489
  Author: Saeed Mortezazadeh <49119048+samo38 at users.noreply.github.com>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge pull request #387 from samo38/ticket_748

Ticket 748: Enhance Spectrum Decomposition GUI and functionality


  Commit: 3fef021d4fad55bc1bb07521af0bff3e7ac12095
      https://github.com/ehb54/ultrascan3/commit/3fef021d4fad55bc1bb07521af0bff3e7ac12095
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue791


  Commit: cb192562f44149651f3157090d395a05f79da39e
      https://github.com/ehb54/ultrascan3/commit/cb192562f44149651f3157090d395a05f79da39e
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h

  Log Message:
  -----------
  Merge pull request #396 from ehb54/alexey-dev-issue791

GMP-ABDE: Ranges & Upload check for ext. profiles -- while situations?


  Commit: 81695e7ad3f97f7cd46fe42d8148a8911fc3fc43
      https://github.com/ehb54/ultrascan3/commit/81695e7ad3f97f7cd46fe42d8148a8911fc3fc43
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


Compare: https://github.com/ehb54/ultrascan3/compare/e1e93704ad79...81695e7ad3f9

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From noreply at github.com  Thu Mar 19 11:21:48 2026
From: noreply at github.com (aaron-auc)
Date: Thu, 19 Mar 2026 10:21:48 -0700
Subject: [us-commits] [ehb54/ultrascan3] bed896: mod: PR comments addressed
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/81695e-5205cb@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: bed8960f5d491db022be512a82491fc248abcbf9
      https://github.com/ehb54/ultrascan3/commit/bed8960f5d491db022be512a82491fc248abcbf9
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M doc/manual/CMakeLists.txt
    M doc/manual/README.md
    M doc/manual/source/conf.py
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  mod: PR comments addressed


  Commit: 5205cb5542bd366b63909189ac9691c6473fc071
      https://github.com/ehb54/ultrascan3/commit/5205cb5542bd366b63909189ac9691c6473fc071
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2


Compare: https://github.com/ehb54/ultrascan3/compare/81695e7ad3f9...5205cb5542bd

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From noreply at github.com  Thu Mar 19 11:48:31 2026
From: noreply at github.com (aaron-auc)
Date: Thu, 19 Mar 2026 10:48:31 -0700
Subject: [us-commits] [ehb54/ultrascan3] 76e772: fix: skip subdirectory
 doc/manual if hpc or docume...
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/5205cb-76e772@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 76e772666ba74f76a6d525444b9c0cd8f9d01e76
      https://github.com/ehb54/ultrascan3/commit/76e772666ba74f76a6d525444b9c0cd8f9d01e76
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M doc/manual/CMakeLists.txt

  Log Message:
  -----------
  fix: skip subdirectory doc/manual if hpc or documentation off



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From noreply at github.com  Thu Mar 19 18:45:50 2026
From: noreply at github.com (alexsav815)
Date: Thu, 19 Mar 2026 17:45:50 -0700
Subject: [us-commits] [ehb54/ultrascan3] abe431: GMP-ABDE -- 4. EDIT points
 addressed for ticket #7...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue792/50c4d0-abe431@github.com>

  Branch: refs/heads/alexey-dev-issue792
  Home:   https://github.com/ehb54/ultrascan3
  Commit: abe431ae514b67270d74e84b599ef069673c1164
      https://github.com/ehb54/ultrascan3/commit/abe431ae514b67270d74e84b599ef069673c1164
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  GMP-ABDE -- 4. EDIT points addressed for ticket #792...



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From noreply at github.com  Thu Mar 19 19:13:44 2026
From: noreply at github.com (aaron-auc)
Date: Thu, 19 Mar 2026 18:13:44 -0700
Subject: [us-commits] [ehb54/us3lims_dbinst] 5e2244: remove: webmaster,
 search, and partner pages
Message-ID: <ehb54/us3lims_dbinst/push/refs/heads/793-request-remove-from-lims-webmaster-partners/c6fdc6-5e2244@github.com>

  Branch: refs/heads/793-request-remove-from-lims-webmaster-partners
  Home:   https://github.com/ehb54/us3lims_dbinst
  Commit: 5e2244645ff5b0d2dd4765ca907d2b16ce45ccc0
      https://github.com/ehb54/us3lims_dbinst/commit/5e2244645ff5b0d2dd4765ca907d2b16ce45ccc0
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M data_security.php
    M links.php
    R partners.php
    R search.php

  Log Message:
  -----------
  remove: webmaster, search, and partner pages



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From noreply at github.com  Thu Mar 19 19:13:44 2026
From: noreply at github.com (aaron-auc)
Date: Thu, 19 Mar 2026 18:13:44 -0700
Subject: [us-commits] [ehb54/us3lims_common] aabde4: remove: webmaster,
 search, and partner pages
Message-ID: <ehb54/us3lims_common/push/refs/heads/793-request-remove-from-lims-webmaster-partners/1b7304-aabde4@github.com>

  Branch: refs/heads/793-request-remove-from-lims-webmaster-partners
  Home:   https://github.com/ehb54/us3lims_common
  Commit: aabde4ef74135b96be4b4009e16694f9df9d346d
      https://github.com/ehb54/us3lims_common/commit/aabde4ef74135b96be4b4009e16694f9df9d346d
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    R images/TACC.gif
    M images/favicon.ico
    R images/iu.png
    R images/prace_logo.png
    R images/sdsc_logo.png
    R images/teragrid.png
    R images/uthscsa.gif
    R images/uthscsa_logo.png
    R images/xsede.png
    R partners.php
    R search.php

  Log Message:
  -----------
  remove: webmaster, search, and partner pages



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From noreply at github.com  Thu Mar 19 19:13:43 2026
From: noreply at github.com (aaron-auc)
Date: Thu, 19 Mar 2026 18:13:43 -0700
Subject: [us-commits] [ehb54/us3lims_webinfo] 3fb7ac: remove: webmaster,
 search, and partner pages
Message-ID: <ehb54/us3lims_webinfo/push/refs/heads/793-request-remove-from-lims-webmaster-partners/dbe784-3fb7ac@github.com>

  Branch: refs/heads/793-request-remove-from-lims-webmaster-partners
  Home:   https://github.com/ehb54/us3lims_webinfo
  Commit: 3fb7ac7353da7578792e3779e0e9884b4170a25e
      https://github.com/ehb54/us3lims_webinfo/commit/3fb7ac7353da7578792e3779e0e9884b4170a25e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M header.php
    R partners.php
    R search.php

  Log Message:
  -----------
  remove: webmaster, search, and partner pages



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From noreply at github.com  Thu Mar 19 19:13:41 2026
From: noreply at github.com (aaron-auc)
Date: Thu, 19 Mar 2026 18:13:41 -0700
Subject: [us-commits] [ehb54/us3lims_newinst] ff2262: remove: webmaster,
 search, and partner pages
Message-ID: <ehb54/us3lims_newinst/push/refs/heads/793-request-remove-from-lims-webmaster-partners/c9e9fa-ff2262@github.com>

  Branch: refs/heads/793-request-remove-from-lims-webmaster-partners
  Home:   https://github.com/ehb54/us3lims_newinst
  Commit: ff226249edfee0d9006176b74ff4fa49eb921a74
      https://github.com/ehb54/us3lims_newinst/commit/ff226249edfee0d9006176b74ff4fa49eb921a74
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M links.php
    R partners.php
    R search.php

  Log Message:
  -----------
  remove: webmaster, search, and partner pages



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From noreply at github.com  Thu Mar 19 20:07:44 2026
From: noreply at github.com (alexsav815)
Date: Thu, 19 Mar 2026 19:07:44 -0700
Subject: [us-commits] [ehb54/ultrascan3] b1c5c0: [1]GMP-ABDE -- 4. EDIT
 points addressed for ticket...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue792/abe431-b1c5c0@github.com>

  Branch: refs/heads/alexey-dev-issue792
  Home:   https://github.com/ehb54/ultrascan3
  Commit: b1c5c0de414d093440081fca1a975a4e1118a9d1
      https://github.com/ehb54/ultrascan3/commit/b1c5c0de414d093440081fca1a975a4e1118a9d1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [1]GMP-ABDE -- 4. EDIT points addressed for ticket #792...



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From noreply at github.com  Thu Mar 19 20:21:55 2026
From: noreply at github.com (alexsav815)
Date: Thu, 19 Mar 2026 19:21:55 -0700
Subject: [us-commits] [ehb54/ultrascan3] c53782: [2]GMP-ABDE -- 4. EDIT
 points addressed for ticket...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue792/b1c5c0-c53782@github.com>

  Branch: refs/heads/alexey-dev-issue792
  Home:   https://github.com/ehb54/ultrascan3
  Commit: c53782335d3f1e5fc4fc2ea6f97ee3d64c79389b
      https://github.com/ehb54/ultrascan3/commit/c53782335d3f1e5fc4fc2ea6f97ee3d64c79389b
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [2]GMP-ABDE -- 4. EDIT points addressed for ticket #792...



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From noreply at github.com  Thu Mar 19 20:28:26 2026
From: noreply at github.com (alexsav815)
Date: Thu, 19 Mar 2026 19:28:26 -0700
Subject: [us-commits] [ehb54/ultrascan3] 672254: [3]GMP-ABDE -- 4. EDIT
 points addressed for ticket...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue792/c53782-672254@github.com>

  Branch: refs/heads/alexey-dev-issue792
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 672254d0e59b1e555aa0aa2506e7871bb188c5d4
      https://github.com/ehb54/ultrascan3/commit/672254d0e59b1e555aa0aa2506e7871bb188c5d4
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [3]GMP-ABDE -- 4. EDIT points addressed for ticket #792...



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From noreply at github.com  Fri Mar 20 07:19:49 2026
From: noreply at github.com (aaron-auc)
Date: Fri, 20 Mar 2026 06:19:49 -0700
Subject: [us-commits] [ehb54/ultrascan3] 05b438: fix: Reformat
 CMakePresets.json to multi-line styl...
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/76e772-05b438@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 05b438d52cffda88429e278cae66fead57b193ec
      https://github.com/ehb54/ultrascan3/commit/05b438d52cffda88429e278cae66fead57b193ec
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M CMakePresets.json
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    R doc/manual/source/conf.py-orig.081225
    M gui/CMakeLists.txt
    M programs/us_helpdaemon/us_helpdaemon.cpp

  Log Message:
  -----------
  fix: Reformat CMakePresets.json to multi-line style; add US3_NO_DB=ON to all HPC
     presets; fix GLU elseif(UNIX) branch; drop dead Windows assistant path check.



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From noreply at github.com  Fri Mar 20 07:55:02 2026
From: noreply at github.com (aaron-auc)
Date: Fri, 20 Mar 2026 06:55:02 -0700
Subject: [us-commits] [ehb54/ultrascan3] 21882c: fix: pr comments
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/05b438-21882c@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 21882cd1fd05a489de72b721e1e4bebaa8fb9ac5
      https://github.com/ehb54/ultrascan3/commit/21882cd1fd05a489de72b721e1e4bebaa8fb9ac5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M doc/manual/CMakeLists.txt
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  fix: pr comments



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From noreply at github.com  Fri Mar 20 08:02:04 2026
From: noreply at github.com (aaron-auc)
Date: Fri, 20 Mar 2026 07:02:04 -0700
Subject: [us-commits] [ehb54/ultrascan3] 39a947: fix: make all moved to top
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/21882c-39a947@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 39a94736afc6e6b1450549833138c494fc1ff36b
      https://github.com/ehb54/ultrascan3/commit/39a94736afc6e6b1450549833138c494fc1ff36b
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M doc/manual/Makefile

  Log Message:
  -----------
  fix: make all moved to top



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From noreply at github.com  Fri Mar 20 08:32:08 2026
From: noreply at github.com (Lukas Dobler)
Date: Fri, 20 Mar 2026 07:32:08 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_solution_analyte/000000-cb1925@github.com>

  Branch: refs/heads/lukas/us_solution_analyte
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Fri Mar 20 09:09:02 2026
From: noreply at github.com (Lukas Dobler)
Date: Fri, 20 Mar 2026 08:09:02 -0700
Subject: [us-commits] [ehb54/ultrascan3] 5470c9: Enforce analyte for
 solution in us_solution_gui
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_solution_analyte/cb1925-5470c9@github.com>

  Branch: refs/heads/lukas/us_solution_analyte
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 5470c9ac380ea0b9e9e522bcb85e831bf0e466fd
      https://github.com/ehb54/ultrascan3/commit/5470c9ac380ea0b9e9e522bcb85e831bf0e466fd
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M gui/us_solution_gui.cpp
    M gui/us_solution_gui.h

  Log Message:
  -----------
  Enforce analyte for solution in us_solution_gui



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From noreply at github.com  Fri Mar 20 11:16:43 2026
From: noreply at github.com (Lukas Dobler)
Date: Fri, 20 Mar 2026 10:16:43 -0700
Subject: [us-commits] [ehb54/ultrascan3] cb5e49: Update comments,
 fix function signature
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_solution_analyte/5470c9-cb5e49@github.com>

  Branch: refs/heads/lukas/us_solution_analyte
  Home:   https://github.com/ehb54/ultrascan3
  Commit: cb5e49b544fddf3329fd8662619f4a524628a69e
      https://github.com/ehb54/ultrascan3/commit/cb5e49b544fddf3329fd8662619f4a524628a69e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M gui/us_solution_gui.cpp
    M gui/us_solution_gui.h

  Log Message:
  -----------
  Update comments, fix function signature



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From noreply at github.com  Fri Mar 20 14:14:34 2026
From: noreply at github.com (alexsav815)
Date: Fri, 20 Mar 2026 13:14:34 -0700
Subject: [us-commits] [ehb54/ultrascan3] 01301f: GMP-ABDE -- 5. Analysis
 addressed for ticket #792...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue792/672254-01301f@github.com>

  Branch: refs/heads/alexey-dev-issue792
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 01301f4fb775a852d7048cf88a308ff8dd796f5a
      https://github.com/ehb54/ultrascan3/commit/01301f4fb775a852d7048cf88a308ff8dd796f5a
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp

  Log Message:
  -----------
  GMP-ABDE -- 5. Analysis addressed for ticket #792...



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From noreply at github.com  Fri Mar 20 14:34:59 2026
From: noreply at github.com (alexsav815)
Date: Fri, 20 Mar 2026 13:34:59 -0700
Subject: [us-commits] [ehb54/ultrascan3] 3ba588: [2]GMP-ABDE -- 5. Analysis
 addressed for ticket #7...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue792/01301f-3ba588@github.com>

  Branch: refs/heads/alexey-dev-issue792
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 3ba588420b506827b73516e8dfa8cd4ae9b2ff28
      https://github.com/ehb54/ultrascan3/commit/3ba588420b506827b73516e8dfa8cd4ae9b2ff28
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M programs/us_abde/us_norm_profile.cpp

  Log Message:
  -----------
  [2]GMP-ABDE -- 5. Analysis addressed for ticket #792...



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From noreply at github.com  Fri Mar 20 16:02:26 2026
From: noreply at github.com (aaron-auc)
Date: Fri, 20 Mar 2026 15:02:26 -0700
Subject: [us-commits] [ehb54/ultrascan3] 55ad77: fix: presets
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/39a947-55ad77@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 55ad77b5ea4726efff74c2e3da2b763af7b12070
      https://github.com/ehb54/ultrascan3/commit/55ad77b5ea4726efff74c2e3da2b763af7b12070
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    M doc/manual/CMakeLists.txt

  Log Message:
  -----------
  fix: presets



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From noreply at github.com  Sat Mar 21 10:02:18 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 21 Mar 2026 09:02:18 -0700
Subject: [us-commits] [ehb54/ultrascan3] ad1cea: Show warning before
 accepting a solution without a...
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_solution_analyte/cb5e49-ad1cea@github.com>

  Branch: refs/heads/lukas/us_solution_analyte
  Home:   https://github.com/ehb54/ultrascan3
  Commit: ad1ceab5b0c51349e506ad4feebf2d0e9442b18f
      https://github.com/ehb54/ultrascan3/commit/ad1ceab5b0c51349e506ad4feebf2d0e9442b18f
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-21 (Sat, 21 Mar 2026)

  Changed paths:
    M gui/us_solution_gui.cpp

  Log Message:
  -----------
  Show warning before accepting a solution without analyte or common vbar



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From noreply at github.com  Sat Mar 21 10:12:17 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 21 Mar 2026 09:12:17 -0700
Subject: [us-commits] [ehb54/us3lims_dbinst]
Message-ID: <ehb54/us3lims_dbinst/push/refs/heads/lukas/text_update/000000-c6fdc6@github.com>

  Branch: refs/heads/lukas/text_update
  Home:   https://github.com/ehb54/us3lims_dbinst

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From noreply at github.com  Sat Mar 21 10:15:13 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 21 Mar 2026 09:15:13 -0700
Subject: [us-commits] [ehb54/us3lims_dbinst] 03ef87: Revise UltraScan
 information and funding details
Message-ID: <ehb54/us3lims_dbinst/push/refs/heads/lukas/text_update/c6fdc6-03ef87@github.com>

  Branch: refs/heads/lukas/text_update
  Home:   https://github.com/ehb54/us3lims_dbinst
  Commit: 03ef875fe960cab15f8f57a32446a14e0eeecf64
      https://github.com/ehb54/us3lims_dbinst/commit/03ef875fe960cab15f8f57a32446a14e0eeecf64
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-21 (Sat, 21 Mar 2026)

  Changed paths:
    M index.php

  Log Message:
  -----------
  Revise UltraScan information and funding details

Updated content related to UltraScan software and funding sources.



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From noreply at github.com  Sat Mar 21 10:32:16 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 21 Mar 2026 09:32:16 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_astfem_sim_bfe_fix/000000-cb1925@github.com>

  Branch: refs/heads/lukas/us_astfem_sim_bfe_fix
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Sat Mar 21 10:37:58 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 21 Mar 2026 09:37:58 -0700
Subject: [us-commits] [ehb54/ultrascan3] 7bfe32: Add band_forming check for
 low concentration flag
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_astfem_sim_bfe_fix/cb1925-7bfe32@github.com>

  Branch: refs/heads/lukas/us_astfem_sim_bfe_fix
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 7bfe32ca6b7830a5b30fc3e995feb35daccc7460
      https://github.com/ehb54/ultrascan3/commit/7bfe32ca6b7830a5b30fc3e995feb35daccc7460
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-21 (Sat, 21 Mar 2026)

  Changed paths:
    M utils/us_astfem_rsa.cpp

  Log Message:
  -----------
  Add band_forming check for low concentration flag



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From noreply at github.com  Sat Mar 21 10:44:41 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 21 Mar 2026 09:44:41 -0700
Subject: [us-commits] [ehb54/ultrascan3] fb3b2b: Fix y-axis scale for
 band-forming plots
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_astfem_sim_bfe_fix/7bfe32-fb3b2b@github.com>

  Branch: refs/heads/lukas/us_astfem_sim_bfe_fix
  Home:   https://github.com/ehb54/ultrascan3
  Commit: fb3b2bbbe972a00864dd68b72b5da64234516056
      https://github.com/ehb54/ultrascan3/commit/fb3b2bbbe972a00864dd68b72b5da64234516056
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-21 (Sat, 21 Mar 2026)

  Changed paths:
    M programs/us_astfem_sim/us_astfem_sim.cpp

  Log Message:
  -----------
  Fix y-axis scale for band-forming plots



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From noreply at github.com  Sat Mar 21 11:32:05 2026
From: noreply at github.com (Borries Demeler)
Date: Sat, 21 Mar 2026 10:32:05 -0700
Subject: [us-commits] [ehb54/us3lims_dbinst] 1c50cb: Apply suggestions from
 code review
Message-ID: <ehb54/us3lims_dbinst/push/refs/heads/lukas/text_update/03ef87-1c50cb@github.com>

  Branch: refs/heads/lukas/text_update
  Home:   https://github.com/ehb54/us3lims_dbinst
  Commit: 1c50cb64dd784de5ad221bd566187ccce9922f74
      https://github.com/ehb54/us3lims_dbinst/commit/1c50cb64dd784de5ad221bd566187ccce9922f74
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2026-03-21 (Sat, 21 Mar 2026)

  Changed paths:
    M index.php

  Log Message:
  -----------
  Apply suggestions from code review

Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com>



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From noreply at github.com  Sat Mar 21 11:38:58 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 21 Mar 2026 10:38:58 -0700
Subject: [us-commits] [ehb54/us3lims_dbinst] 03ef87: Revise UltraScan
 information and funding details
Message-ID: <ehb54/us3lims_dbinst/push/refs/heads/main/c6fdc6-056032@github.com>

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/us3lims_dbinst
  Commit: 03ef875fe960cab15f8f57a32446a14e0eeecf64
      https://github.com/ehb54/us3lims_dbinst/commit/03ef875fe960cab15f8f57a32446a14e0eeecf64
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-21 (Sat, 21 Mar 2026)

  Changed paths:
    M index.php

  Log Message:
  -----------
  Revise UltraScan information and funding details

Updated content related to UltraScan software and funding sources.


  Commit: 1c50cb64dd784de5ad221bd566187ccce9922f74
      https://github.com/ehb54/us3lims_dbinst/commit/1c50cb64dd784de5ad221bd566187ccce9922f74
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2026-03-21 (Sat, 21 Mar 2026)

  Changed paths:
    M index.php

  Log Message:
  -----------
  Apply suggestions from code review

Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com>


  Commit: 0560329ba70fc1218826ccb5e4a17d0390a0c2cc
      https://github.com/ehb54/us3lims_dbinst/commit/0560329ba70fc1218826ccb5e4a17d0390a0c2cc
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-21 (Sat, 21 Mar 2026)

  Changed paths:
    M index.php

  Log Message:
  -----------
  Merge pull request #53 from ehb54/lukas/text_update

Revise UltraScan information and funding details


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From noreply at github.com  Sat Mar 21 11:39:06 2026
From: noreply at github.com (Lukas Dobler)
Date: Sat, 21 Mar 2026 10:39:06 -0700
Subject: [us-commits] [ehb54/us3lims_dbinst]
Message-ID: <ehb54/us3lims_dbinst/push/refs/heads/lukas/text_update/1c50cb-000000@github.com>

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From noreply at github.com  Sat Mar 21 18:00:57 2026
From: noreply at github.com (aaron-auc)
Date: Sat, 21 Mar 2026 17:00:57 -0700
Subject: [us-commits] [ehb54/ultrascan3] 8aeda7: mod: readmes
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/55ad77-8aeda7@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 8aeda75b69a9c2d9df2af035ea7265bb93bdacef
      https://github.com/ehb54/ultrascan3/commit/8aeda75b69a9c2d9df2af035ea7265bb93bdacef
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-21 (Sat, 21 Mar 2026)

  Changed paths:
    A admin/cmake/README.md
    A admin/cmake/packaging/README.md
    A pkg/macos/README.md

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  mod: readmes



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From noreply at github.com  Sun Mar 22 03:49:49 2026
From: noreply at github.com (Borries Demeler)
Date: Sun, 22 Mar 2026 02:49:49 -0700
Subject: [us-commits] [ehb54/us3lims_newinst] ff2262: remove: webmaster,
 search, and partner pages
Message-ID: <ehb54/us3lims_newinst/push/refs/heads/main/c9e9fa-fdf3e6@github.com>

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/us3lims_newinst
  Commit: ff226249edfee0d9006176b74ff4fa49eb921a74
      https://github.com/ehb54/us3lims_newinst/commit/ff226249edfee0d9006176b74ff4fa49eb921a74
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M links.php
    R partners.php
    R search.php

  Log Message:
  -----------
  remove: webmaster, search, and partner pages


  Commit: fdf3e600206d52ad0cb3bfdf6f48994cd2871fbf
      https://github.com/ehb54/us3lims_newinst/commit/fdf3e600206d52ad0cb3bfdf6f48994cd2871fbf
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2026-03-22 (Sun, 22 Mar 2026)

  Changed paths:
    M links.php
    R partners.php
    R search.php

  Log Message:
  -----------
  Merge pull request #14 from ehb54/793-request-remove-from-lims-webmaster-partners

Remove webmaster, search, and partner pages


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From noreply at github.com  Sun Mar 22 15:03:31 2026
From: noreply at github.com (alexsav815)
Date: Sun, 22 Mar 2026 14:03:31 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue798/000000-cb1925@github.com>

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From noreply at github.com  Sun Mar 22 15:42:47 2026
From: noreply at github.com (aaron-auc)
Date: Sun, 22 Mar 2026 14:42:47 -0700
Subject: [us-commits] [ehb54/us3lims_webinfo] 3fb7ac: remove: webmaster,
 search, and partner pages
Message-ID: <ehb54/us3lims_webinfo/push/refs/heads/main/dbe784-cb10f1@github.com>

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/us3lims_webinfo
  Commit: 3fb7ac7353da7578792e3779e0e9884b4170a25e
      https://github.com/ehb54/us3lims_webinfo/commit/3fb7ac7353da7578792e3779e0e9884b4170a25e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M header.php
    R partners.php
    R search.php

  Log Message:
  -----------
  remove: webmaster, search, and partner pages


  Commit: cb10f168710cdc89ab3f01b3c757951dc85bf99e
      https://github.com/ehb54/us3lims_webinfo/commit/cb10f168710cdc89ab3f01b3c757951dc85bf99e
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-22 (Sun, 22 Mar 2026)

  Changed paths:
    M header.php
    R partners.php
    R search.php

  Log Message:
  -----------
  Merge pull request #9 from ehb54/793-request-remove-from-lims-webmaster-partners

Remove webmaster, search, and partner pages


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From noreply at github.com  Sun Mar 22 15:54:17 2026
From: noreply at github.com (aaron-auc)
Date: Sun, 22 Mar 2026 14:54:17 -0700
Subject: [us-commits] [ehb54/ultrascan3] 81c3a3: mod: removed documentation.
Message-ID: <ehb54/ultrascan3/push/refs/heads/527-enhancement-sphinx-migration-2/8aeda7-81c3a3@github.com>

  Branch: refs/heads/527-enhancement-sphinx-migration-2
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 81c3a3a5d2a743645b19098027b58ecdc429d634
      https://github.com/ehb54/ultrascan3/commit/81c3a3a5d2a743645b19098027b58ecdc429d634
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-22 (Sun, 22 Mar 2026)

  Changed paths:
    R doc/manual/source/2dsa/2dsa_adv.rst
    R doc/manual/source/2dsa/2dsa_analys.rst
    R doc/manual/source/2dsa/2dsa_main.rst
    R doc/manual/source/2dsa/index.rst
    R doc/manual/source/3d_plot.rst
    R doc/manual/source/analyte/analyte_edit.rst
    R doc/manual/source/analyte/analyte_new.rst
    R doc/manual/source/analyte/analyte_select.rst
    R doc/manual/source/analyte/analyte_settings.rst
    R doc/manual/source/analyte/index.rst
    R doc/manual/source/associations.rst
    R doc/manual/source/astfem_sim.rst
    R doc/manual/source/beckman_openauc.rst
    R doc/manual/source/buffer/buffer_edit.rst
    R doc/manual/source/buffer/buffer_new.rst
    R doc/manual/source/buffer/buffer_select.rst
    R doc/manual/source/buffer/buffer_settings.rst
    R doc/manual/source/buffer/index.rst
    R doc/manual/source/buoyancy_editor.rst
    R doc/manual/source/colorgradient.rst
    R doc/manual/source/combine_models.rst
    R doc/manual/source/common_dialogs.rst
    R doc/manual/source/components.rst
    R doc/manual/source/config.rst
    R doc/manual/source/convert.rst
    R doc/manual/source/ddist_combine.rst
    R doc/manual/source/dens_match.rst
    R doc/manual/source/dmga_init.rst
    R doc/manual/source/dmga_init_constr.rst
    R doc/manual/source/experiment/cells.rst
    R doc/manual/source/experiment/general.rst
    R doc/manual/source/experiment/import.rst
    R doc/manual/source/experiment/index.rst
    R doc/manual/source/experiment/liveupdate.rst
    R doc/manual/source/experiment/optics.rst
    R doc/manual/source/experiment/range.rst
    R doc/manual/source/experiment/rotor.rst
    R doc/manual/source/experiment/solutions.rst
    R doc/manual/source/experiment/speeds.rst
    R doc/manual/source/experiment/submit.rst
    R doc/manual/source/export_legacy.rst
    R doc/manual/source/fe_match/fe_match_adv.rst
    R doc/manual/source/fe_match/fe_match_main.rst
    R doc/manual/source/fe_match/fe_match_simulate.rst
    R doc/manual/source/fe_match/index.rst
    R doc/manual/source/fit_meniscus.rst
    R doc/manual/source/ga_initialize.rst
    R doc/manual/source/gmp/gmp.rst
    R doc/manual/source/gmp/gmp_audit_trail.rst
    R doc/manual/source/gmp/gmp_automation.rst
    R doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst
    R doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst
    R doc/manual/source/gmp/gmp_data_acquisition/index.rst
    R doc/manual/source/gmp/gmp_protocol_development.rst
    R doc/manual/source/gmp/gmp_report_generator.rst
    R doc/manual/source/gmp/gmp_signature.rst
    R doc/manual/source/gmp/index.rst
    R doc/manual/source/grid_editor.rst
    R doc/manual/source/idist_combine.rst
    R doc/manual/source/images/2dsa_3dplot.png
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    R doc/manual/source/images/D20W_bar.png
    R doc/manual/source/images/MW-bar.png
    R doc/manual/source/images/RINplot.png
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    R doc/manual/source/images/add_RIN-TIN.png
    R doc/manual/source/images/add_RIN.png
    R doc/manual/source/images/add_TIN.png
    R doc/manual/source/images/advanced_config.png
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    R doc/manual/source/images/analyte_spec-gui.png
    R doc/manual/source/images/analyte_specmenu.png
    R doc/manual/source/images/analyte_spectrum.png
    R doc/manual/source/images/analytes.png
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    R doc/manual/source/images/astfem_sim.png
    R doc/manual/source/images/bad_grid.png
    R doc/manual/source/images/beck_convert-2.png
    R doc/manual/source/images/beck_converter.png
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    R doc/manual/source/images/buffer_manage_spectrum.png
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    R doc/manual/source/images/experiment_optics.png
    R doc/manual/source/images/experiment_overview.png
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From noreply at github.com  Mon Mar 23 09:13:36 2026
From: noreply at github.com (Lukas Dobler)
Date: Mon, 23 Mar 2026 08:13:36 -0700
Subject: [us-commits] [ehb54/us3lims_common] 3e025a: Remove UTHSCSA from
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  Branch: refs/heads/main
  Home:   https://github.com/ehb54/us3lims_common
  Commit: 3e025ad34479f326e84336530b68983ac116e881
      https://github.com/ehb54/us3lims_common/commit/3e025ad34479f326e84336530b68983ac116e881
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-21 (Sat, 21 Mar 2026)

  Changed paths:
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  Log Message:
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  Remove UTHSCSA from copyright notice


  Commit: 96fe83d43941bf98aed5608c72e63567e813c8d5
      https://github.com/ehb54/us3lims_common/commit/96fe83d43941bf98aed5608c72e63567e813c8d5
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-23 (Mon, 23 Mar 2026)

  Changed paths:
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  Log Message:
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  Merge pull request #18 from doluk/lukas/text_changes

Remove UTHSCSA from copyright notice


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From noreply at github.com  Tue Mar 24 09:58:53 2026
From: noreply at github.com (aaron-auc)
Date: Tue, 24 Mar 2026 08:58:53 -0700
Subject: [us-commits] [ehb54/ultrascan3] 254289: ACAB doubled
Message-ID: <ehb54/ultrascan3/push/refs/heads/main/cb1925-f44854@github.com>

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 2542899201e17dd085de687f6fdfe671fa123bdb
      https://github.com/ehb54/ultrascan3/commit/2542899201e17dd085de687f6fdfe671fa123bdb
  Author: Haben Gabir <haben.gabir at uleth.ca>
  Date:   2026-01-22 (Thu, 22 Jan 2026)

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  Log Message:
  -----------
  ACAB doubled


  Commit: 8617cadc6147eda447864b6626622e9bffa4128e
      https://github.com/ehb54/ultrascan3/commit/8617cadc6147eda447864b6626622e9bffa4128e
  Author: Haben Gabir <haben.gabir at uleth.ca>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    A doc/manual/source/_static/images/bad_grid.png
    A doc/manual/source/_static/images/beck_convert-2.png
    A doc/manual/source/_static/images/beck_converter.png
    A doc/manual/source/_static/images/good_grid.png
    A doc/manual/source/_static/images/grid-setup.png
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    A doc/manual/source/_static/images/xpn_viewer-loaded.png
    A doc/manual/source/_static/images/xpn_viewer-saved.png
    A doc/manual/source/_static/images/xpn_viewer.png
    A doc/manual/source/_static/images/zvalue_eq.png
    M doc/manual/source/beckman_openauc.rst
    M doc/manual/source/buoyancy_editor.rst
    M doc/manual/source/dmga_init.rst
    M doc/manual/source/dmga_init_constr.rst
    M doc/manual/source/experiment/import.rst
    M doc/manual/source/experiment/index.rst
    M doc/manual/source/experiment/liveupdate.rst
    M doc/manual/source/gmp/gmp_automation.rst
    M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst
    M doc/manual/source/gmp/gmp_protocol_development.rst
    M doc/manual/source/grid_editor.rst
    M doc/manual/source/mwl_species_fit.rst
    M doc/manual/source/mwl_species_sim.rst
    M doc/manual/source/mwl_spectra.rst
    M doc/manual/source/predict1.rst
    M doc/manual/source/ramp_data.rst
    M doc/manual/source/tmp.rst
    M doc/manual/source/us_buoyancy.rst
    M doc/manual/source/xpn_viewer.rst

  Log Message:
  -----------
  WALICAFB


  Commit: 779bf5e32b16d7eddc415ecc2fe90709ac0026b9
      https://github.com/ehb54/ultrascan3/commit/779bf5e32b16d7eddc415ecc2fe90709ac0026b9
  Author: Haben Gabir <haben.gabir at uleth.ca>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    A .github/workflows/bump-version.yml
    M CMakeLists.txt
    M CMakePresets.json
    A admin/cmake/toolchain-macos.cmake
    A admin/cmake/triplets/arm64-osx-dynamic.cmake
    M admin/cmake/triplets/x64-osx-dynamic.cmake
    R alpha/srcdevel
    R alpha/us.cpp
    M gui/us_analysis_base2.cpp
    M gui/us_analysis_base2.h
    M gui/us_csv_loader.cpp
    M gui/us_model_loader.cpp
    M gui/us_plot.cpp
    M gui/us_report_gui.cpp
    M gui/us_report_gui.h
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_2dsa/us_2dsa.h
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_dcdt/us_dcdt.cpp
    M programs/us_dcdt/us_dcdt.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_fit_meniscus/CMakeLists.txt
    M programs/us_fit_meniscus/us_fit_meniscus.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.h
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h
    M programs/us_pcsa/us_pcsa.cpp
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    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_second_moment/us_second_moment.cpp
    M programs/us_second_moment/us_second_moment.h
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.h
    M scripts/build.sh
    A test/utils/test_us_regex.cpp
    M utils/CMakeLists.txt
    M utils/us_csv_data.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/main' into haben-Dev


  Commit: 7bf106993a8f72d94033f56ec908772b1087c0ef
      https://github.com/ehb54/ultrascan3/commit/7bf106993a8f72d94033f56ec908772b1087c0ef
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M .github/workflows/bump-version.yml
    M README.manual
    A buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
    A buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat
    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
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    R doc/manual/images/grid_editor_subgrid2-good.png
    R doc/manual/images/grid_editor_subgrid3-bad.png
    R doc/manual/images/grid_editor_subgrid3-good.png
    R doc/manual/images/load_auc-search.png
    R doc/manual/images/load_auc-trips.png
    R doc/manual/images/load_auc.png
    R doc/manual/images/load_colormap.png
    R doc/manual/images/load_model_dis-MID.png
    R doc/manual/images/load_model_distrib.png
    R doc/manual/images/load_noise.png
    R doc/manual/images/load_noise_details.png
    R doc/manual/images/manage_data.png
    R doc/manual/images/manage_data_bhide.png
    R doc/manual/images/manage_data_bshow.png
    R doc/manual/images/manage_data_cmenu-1.png
    R doc/manual/images/manage_data_cmenu-2.png
    R doc/manual/images/manage_data_conf.png
    R doc/manual/images/manage_data_exp.png
    R doc/manual/images/manage_data_pasw.png
    R doc/manual/images/manage_data_sync.png
    R doc/manual/images/manage_data_thelp-1.png
    R doc/manual/images/manage_data_thelp-2.png
    R doc/manual/images/master-pw.png
    R doc/manual/images/model_editor.png
    R doc/manual/images/mwlr_view_3dplot.png
    R doc/manual/images/mwlr_view_load.png
    R doc/manual/images/mwlr_view_pltctrl.png
    R doc/manual/images/mwlr_viewer.png
    R doc/manual/images/mwlr_viewer_xwavl.png
    R doc/manual/images/optima_config_edit.png
    R doc/manual/images/optima_config_new.png
    R doc/manual/images/optima_host_config.png
    R doc/manual/images/pcsa_3dplot.png
    R doc/manual/images/pcsa_analys-line.png
    R doc/manual/images/pcsa_analys-sigm.png
    R doc/manual/images/pcsa_main-c.png
    R doc/manual/images/pcsa_mlines-line1.png
    R doc/manual/images/pcsa_mlines-line2.png
    R doc/manual/images/pcsa_mlines-sigm1.png
    R doc/manual/images/pcsa_mlines-sigm2.png
    R doc/manual/images/pcsa_resplot.png
    R doc/manual/images/pcsa_rpscan-auto.png
    R doc/manual/images/pcsa_rpscan-select.png
    R doc/manual/images/predict1.png
    R doc/manual/images/predict2-1.png
    R doc/manual/images/pseudo3d_comb_rmv.png
    R doc/manual/images/pseudo3d_combine.png
    R doc/manual/images/register.png
    R doc/manual/images/reporter-cmenu.png
    R doc/manual/images/reporter-details.png
    R doc/manual/images/reporter-loadprof.png
    R doc/manual/images/reporter-save.png
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    R doc/manual/images/reporter-view.png
    R doc/manual/images/reporter-viewitem.png
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    R doc/manual/images/rotor-add.png
    R doc/manual/images/rotor-save-calibration.png
    R doc/manual/images/rotor.png
    R doc/manual/images/rotorstretch-0.png
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    R doc/manual/images/rotorstretch-5.png
    R doc/manual/images/rotorstretch-6.png
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    R doc/manual/images/sassoc/sassoc_01.png
    R doc/manual/images/sassoc/sassoc_02.png
    R doc/manual/images/save_colormap.png
    R doc/manual/images/second_moment.png
    R doc/manual/images/select_edits.png
    R doc/manual/images/select_runs.png
    R doc/manual/images/sequence.png
    R doc/manual/images/simparams.png
    R doc/manual/images/somo/somo_icon.png
    R doc/manual/images/time_derivative.png
    R doc/manual/images/ultra.xpm
    R doc/manual/images/ultrascan3.png
    R doc/manual/images/us_buffer.png
    R doc/manual/images/us_buffer_spect.png
    R doc/manual/images/us_convert/us_convert_01.png
    R doc/manual/images/us_convert/us_convert_02.png
    R doc/manual/images/us_convert/us_convert_03.png
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    R doc/manual/images/us_convert/us_convert_13.png
    R doc/manual/images/us_convert/us_convert_14.png
    R doc/manual/images/us_edit.png
    R doc/manual/images/us_edit_mwl.png
    R doc/manual/images/us_equiltime.png
    R doc/manual/images/us_fds_filemanager-0.png
    R doc/manual/images/us_fds_filemanager-1.png
    R doc/manual/images/us_fds_filemanager-2.png
    R doc/manual/images/us_fds_filemanager-3.png
    R doc/manual/images/us_fds_filemanager-4.png
    R doc/manual/images/us_investigator-2.png
    R doc/manual/images/us_investigator.png
    R doc/manual/images/us_modelmetrics-0.png
    R doc/manual/images/us_project1.png
    R doc/manual/images/us_project2.png
    R doc/manual/images/us_project3.png
    R doc/manual/images/us_solution1.png
    R doc/manual/images/us_solution2.png
    R doc/manual/images/us_solution3.png
    R doc/manual/images/usfont-1.png
    R doc/manual/images/usfont-2.png
    R doc/manual/images/vhw_combine-combo.png
    R doc/manual/images/vhw_combine-envel.png
    R doc/manual/images/vhw_combine-selrun.png
    R doc/manual/images/vhw_combine.png
    R doc/manual/images/vhw_distribution.png
    R doc/manual/images/vhw_enh_groups.png
    R doc/manual/images/vhw_enhanced.png
    R doc/manual/images/vhw_histogram.png
    R doc/manual/index.body
    R doc/manual/load/load_auc.body
    R doc/manual/load/load_colormap.body
    R doc/manual/load/load_model_dis-MID.body
    R doc/manual/load/load_model_distrib.body
    R doc/manual/load/load_noise.body
    R doc/manual/load/load_noise_details.body
    R doc/manual/mainstyle.css
    R doc/manual/make-docs.sh
    R doc/manual/make-html.sh
    R doc/manual/make-qdocs.sh
    R doc/manual/make-wraps.sh
    R doc/manual/manage_data.body
    R doc/manual/manage_data_cmenu.body
    R doc/manual/manage_data_thelp.body
    R doc/manual/manual.qhcp
    R doc/manual/manual.qhp
    R doc/manual/master_pw.body
    R doc/manual/model_editor.body
    R doc/manual/mwlr_view_load.body
    R doc/manual/mwlr_view_pltctrl.body
    R doc/manual/mwlr_viewer.body
    R doc/manual/optima_host_config.body
    R doc/manual/pcsa.body
    R doc/manual/pcsa_analys.body
    R doc/manual/pcsa_mlines.body
    R doc/manual/pcsa_rpscan.body
    R doc/manual/predict1.body
    R doc/manual/predict2.body
    R doc/manual/pseudo3d_comb_rmv.body
    R doc/manual/pseudo3d_combine.body
    R doc/manual/register.body
    R doc/manual/reporter.body
    R doc/manual/rotor.body
    R doc/manual/rotorstretch.body
    R doc/manual/sassoc.body
    R doc/manual/save_colormap.body
    R doc/manual/second_moment.body
    R doc/manual/select_edits.body
    R doc/manual/select_runs.body
    R doc/manual/simparams.body
    R doc/manual/somo.body
    R doc/manual/source/#Makefile#
    M doc/manual/source/conf.py
    R doc/manual/source/make.bat
    M doc/manual/source/requirements.txt
    R doc/manual/template.img.body
    R doc/manual/tidy.conf
    R doc/manual/time_derivative.body
    R doc/manual/ultrascan3.txt
    R doc/manual/us_buffer.body
    R doc/manual/us_edit.body
    R doc/manual/us_edit_mwl.body
    R doc/manual/us_equiltime.body
    R doc/manual/us_fds_filemanager.body
    R doc/manual/us_investigator.body
    R doc/manual/us_modelmetrics.body
    R doc/manual/us_project.body
    R doc/manual/us_solution.body
    R doc/manual/uscol.body
    R doc/manual/uscolor2.body
    R doc/manual/usfont.body
    R doc/manual/usfont2.body
    R doc/manual/vhw_combine.body
    R doc/manual/vhw_distrib_plot.body
    R doc/manual/vhw_enhanced.body
    R doc/manual/wrapped-images.lst
    M gui/us_help.cpp
    M makeall.sh
    M scripts/build.sh
    R vcpkg
    M vcpkg.json

  Log Message:
  -----------
  mod: delete legacy help, integrate sphinx help


  Commit: 3d08b0b47f4e2317e53a69e11dc522f164182ec7
      https://github.com/ehb54/ultrascan3/commit/3d08b0b47f4e2317e53a69e11dc522f164182ec7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake

  Log Message:
  -----------
  mod: release only build for macos


  Commit: 7d351ae823d28a24be8d1406165cb8c4887fb1e7
      https://github.com/ehb54/ultrascan3/commit/7d351ae823d28a24be8d1406165cb8c4887fb1e7
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M gui/us_report_gui.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_proto_ranges.cpp

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 534da76a2eb5090416dc3e2fa4416db272ac9b91
      https://github.com/ehb54/ultrascan3/commit/534da76a2eb5090416dc3e2fa4416db272ac9b91
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-24 (Tue, 24 Feb 2026)

  Changed paths:
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_experiment/us_experiment_gui_optima.h

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: d28e726d4e40aae7be0f55ed03c1e7fe45e36d00
      https://github.com/ehb54/ultrascan3/commit/d28e726d4e40aae7be0f55ed03c1e7fe45e36d00
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-24 (Tue, 24 Feb 2026)

  Changed paths:
    M doc/manual/source/colorgradient.rst
    M doc/manual/source/conf.py
    M doc/manual/source/config.rst
    M doc/manual/source/experiment/range.rst
    M doc/manual/source/export_legacy.rst
    M doc/manual/source/fe_match/fe_match_main.rst
    M doc/manual/source/fe_match/fe_match_simulate.rst
    M doc/manual/source/ga_initialize.rst
    M doc/manual/source/grid_editor.rst
    M doc/manual/source/manage_data.rst
    M doc/manual/source/mwl_spectra.rst
    M doc/manual/source/mwlr_viewer.rst
    M doc/manual/source/pcsa/pcsa_analys.rst
    M doc/manual/source/requirements.txt
    M doc/manual/source/us_project.rst
    M doc/manual/source/vhw_combine.rst

  Log Message:
  -----------
  mod: migrate to sphinx-design from subfigure


  Commit: 8318d566a89cb3e06093e1d79d56d11d3488103a
      https://github.com/ehb54/ultrascan3/commit/8318d566a89cb3e06093e1d79d56d11d3488103a
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    R admin/cmake/toolchain-macos.cmake
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M programs/us/CMakeLists.txt
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 85100ef73842bc75a8f210f7b9038301adae82db
      https://github.com/ehb54/ultrascan3/commit/85100ef73842bc75a8f210f7b9038301adae82db
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M gui/us_spectrodata.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 7f63285b165bc88c2a317f9f368082e0d24d8861
      https://github.com/ehb54/ultrascan3/commit/7f63285b165bc88c2a317f9f368082e0d24d8861
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-28 (Sat, 28 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    A admin/cmake/MacDeploy.cmake
    R buildsys/vcpkg/overlay-ports/qt5-tools/fix-pkgconfig-qt5uiplugin-not-found.patch
    R buildsys/vcpkg/overlay-ports/qt5-tools/fix-spawnvp-argv.patch
    R buildsys/vcpkg/overlay-ports/qt5-tools/libclang.patch
    R buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    R buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    M doc/manual/CMakeLists.txt
    A doc/manual/StageAssistant.cmake
    M doc/manual/source/mwl_spectra.rst
    M gui/CMakeLists.txt
    M gui/us_help.cpp
    M programs/us_helpdaemon/us_helpdaemon.cpp
    M qwtplot3d/CMakeLists.txt
    M scripts/build.sh
    M vcpkg.json

  Log Message:
  -----------
  fix: fix qt help search and implement dmg


  Commit: 8e3d67b30d1a4eaf6faf0d18d80a835288ee5ae7
      https://github.com/ehb54/ultrascan3/commit/8e3d67b30d1a4eaf6faf0d18d80a835288ee5ae7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-28 (Sat, 28 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    R admin/cmake/toolchain-macos.cmake
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M gui/us_spectrodata.h
    M programs/us/CMakeLists.txt
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    M vcpkg.json

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2

# Conflicts:
#	.gitignore
#	scripts/build.sh


  Commit: ef3356b450a93ec526f92ee27da0a9bfcfa9c04a
      https://github.com/ehb54/ultrascan3/commit/ef3356b450a93ec526f92ee27da0a9bfcfa9c04a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-01 (Sun, 01 Mar 2026)

  Changed paths:
    M LICENSE.txt

  Log Message:
  -----------
  fix: text was original utf-8 so quotes became questions marks with ascii tool. Changed ? to ascii quotes.


  Commit: 82c2dc2269b90376cf1f69ca3f88b4bee38c641e
      https://github.com/ehb54/ultrascan3/commit/82c2dc2269b90376cf1f69ca3f88b4bee38c641e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    R admin/cmake/MacDeploy.cmake
    A admin/cmake/packaging/macos/MacDeploy.cmake
    A admin/cmake/packaging/macos/MacOsPkg.cmake
    A pkg/macos/component.plist
    A pkg/macos/distribution.xml.in
    A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist
    A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3
    A pkg/macos/postinstall
    A pkg/macos/preinstall
    A pkg/macos/resources/Welcome.txt.in
    A pkg/macos/resources/background.png
    A pkg/macos/ultrascan_sysctl.plist
    A pkg/macos/uninstall.sh
    M scripts/build.sh

  Log Message:
  -----------
  add: launcher and packaging step


  Commit: 88ef4e481d1b4ea751d997b156e3782f1befce93
      https://github.com/ehb54/ultrascan3/commit/88ef4e481d1b4ea751d997b156e3782f1befce93
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    M admin/cmake/packaging/macos/MacDeploy.cmake
    M admin/cmake/toolchain.cmake
    M doc/manual/CMakeLists.txt
    M doc/manual/StageAssistant.cmake

  Log Message:
  -----------
  add: working qt6 build and install


  Commit: 04583d8a1b0bcf01875f31b93a12343610284126
      https://github.com/ehb54/ultrascan3/commit/04583d8a1b0bcf01875f31b93a12343610284126
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    A admin/cmake/packaging/windows/WinDeploy.cmake
    A admin/cmake/packaging/windows/WinPkg.cmake

  Log Message:
  -----------
  add: windows installer


  Commit: 20b958cec1d253988daedd88a2fec65efd28448d
      https://github.com/ehb54/ultrascan3/commit/20b958cec1d253988daedd88a2fec65efd28448d
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  add: pkg command to build.ps1


  Commit: 2698e05dd320a374785cab43ed05a52db3c5c3a7
      https://github.com/ehb54/ultrascan3/commit/2698e05dd320a374785cab43ed05a52db3c5c3a7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinPkg.cmake
    M scripts/build.ps1

  Log Message:
  -----------
  fix: missing programs in installer package


  Commit: 499648d1ea27751d008981e0d9f1447cfbef7072
      https://github.com/ehb54/ultrascan3/commit/499648d1ea27751d008981e0d9f1447cfbef7072
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M scripts/build.ps1

  Log Message:
  -----------
  fix: missing sphinx on windows build


  Commit: 6a9245189a1804e4557df78035f6f4401a5883ea
      https://github.com/ehb54/ultrascan3/commit/6a9245189a1804e4557df78035f6f4401a5883ea
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M doc/manual/Makefile
    M doc/manual/source/2dsa/2dsa_adv.rst
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    A doc/manual/source/images/ultrascan3.png
    A doc/manual/source/images/upload_fit_spectrum.png
    A doc/manual/source/images/us_buffer.png
    A doc/manual/source/images/us_buffer_spect.png
    A doc/manual/source/images/us_conv-RA.png
    A doc/manual/source/images/us_convert/us_convert_01.png
    A doc/manual/source/images/us_convert/us_convert_02.png
    A doc/manual/source/images/us_convert/us_convert_03.png
    A doc/manual/source/images/us_convert/us_convert_04.png
    A doc/manual/source/images/us_convert/us_convert_05.png
    A doc/manual/source/images/us_convert/us_convert_06.png
    A doc/manual/source/images/us_convert/us_convert_07.png
    A doc/manual/source/images/us_convert/us_convert_08.png
    A doc/manual/source/images/us_convert/us_convert_09.png
    A doc/manual/source/images/us_convert/us_convert_10.png
    A doc/manual/source/images/us_convert/us_convert_11.png
    A doc/manual/source/images/us_convert/us_convert_12.png
    A doc/manual/source/images/us_convert/us_convert_13.png
    A doc/manual/source/images/us_convert/us_convert_14.png
    A doc/manual/source/images/us_convert_01.png
    A doc/manual/source/images/us_convert_02.png
    A doc/manual/source/images/us_convert_03.png
    A doc/manual/source/images/us_convert_04.png
    A doc/manual/source/images/us_convert_05.png
    A doc/manual/source/images/us_convert_06.png
    A doc/manual/source/images/us_convert_07.png
    A doc/manual/source/images/us_convert_08.png
    A doc/manual/source/images/us_convert_09.png
    A doc/manual/source/images/us_convert_10.png
    A doc/manual/source/images/us_convert_11.png
    A doc/manual/source/images/us_convert_12.png
    A doc/manual/source/images/us_convert_13.png
    A doc/manual/source/images/us_convert_14.png
    A doc/manual/source/images/us_convert_definedscans.png
    A doc/manual/source/images/us_convert_definesubset.png
    A doc/manual/source/images/us_edit.png
    A doc/manual/source/images/us_edit_mwl.png
    A doc/manual/source/images/us_equiltime.png
    A doc/manual/source/images/us_extinction-0.png
    A doc/manual/source/images/us_extinction-00.png
    A doc/manual/source/images/us_extinction-000.png
    A doc/manual/source/images/us_extinction-1.png
    A doc/manual/source/images/us_extinction-2.png
    A doc/manual/source/images/us_extinction-3.png
    A doc/manual/source/images/us_fds_filemanager-0.png
    A doc/manual/source/images/us_fds_filemanager-1.png
    A doc/manual/source/images/us_fds_filemanager-2.png
    A doc/manual/source/images/us_fds_filemanager-3.png
    A doc/manual/source/images/us_fds_filemanager-4.png
    A doc/manual/source/images/us_investigator-2.png
    A doc/manual/source/images/us_investigator.png
    A doc/manual/source/images/us_modelmetrics-0.png
    A doc/manual/source/images/us_modmet_report.png
    A doc/manual/source/images/us_project.png
    A doc/manual/source/images/us_project1.png
    A doc/manual/source/images/us_project2.png
    A doc/manual/source/images/us_project3.png
    A doc/manual/source/images/us_project_add-supdata.png
    A doc/manual/source/images/us_project_edit-supdata.png
    A doc/manual/source/images/us_project_web.png
    A doc/manual/source/images/us_project_webed.png
    A doc/manual/source/images/us_solution1.png
    A doc/manual/source/images/us_solution2.png
    A doc/manual/source/images/us_solution3.png
    A doc/manual/source/images/us_spectrum-0.png
    A doc/manual/source/images/us_spectrum-1.png
    A doc/manual/source/images/us_spectrum-load.png
    A doc/manual/source/images/usfont-1.png
    A doc/manual/source/images/usfont-2.png
    A doc/manual/source/images/vhw_combine-combo.png
    A doc/manual/source/images/vhw_combine-envel.png
    A doc/manual/source/images/vhw_combine-selrun.png
    A doc/manual/source/images/vhw_combine.png
    A doc/manual/source/images/vhw_distribution.png
    A doc/manual/source/images/vhw_enh_groups.png
    A doc/manual/source/images/vhw_enh_groups.png6-33-11.png
    A doc/manual/source/images/vhw_enh_groups_res.png
    A doc/manual/source/images/vhw_enhanced.png
    A doc/manual/source/images/vhw_histogram.png
    A doc/manual/source/images/xpn_viewer-loaded.png
    A doc/manual/source/images/xpn_viewer-saved.png
    A doc/manual/source/images/xpn_viewer.png
    A doc/manual/source/images/zvalue_eq.png
    M doc/manual/source/index.rst
    M doc/manual/source/manage_data.rst
    M doc/manual/source/model_editor.rst
    M doc/manual/source/mwl_spectra.rst
    M doc/manual/source/mwlr_viewer.rst
    M doc/manual/source/pcsa/index.rst
    M doc/manual/source/pcsa/pcsa.rst
    M doc/manual/source/pcsa/pcsa_adv.rst
    M doc/manual/source/pcsa/pcsa_analys.rst
    M doc/manual/source/pcsa/pcsa_mlines.rst
    M doc/manual/source/pcsa/pcsa_results.rst
    M doc/manual/source/pcsa/pcsa_rpscan.rst
    M doc/manual/source/predict1.rst
    M doc/manual/source/predict2.rst
    M doc/manual/source/pseudo3d.rst
    M doc/manual/source/register.rst
    M doc/manual/source/reporter.rst
    M doc/manual/source/requirements.txt
    M doc/manual/source/rmsd_query.rst
    M doc/manual/source/rotor.rst
    M doc/manual/source/rotor_calibration.rst
    M doc/manual/source/run_details.rst
    M doc/manual/source/sassoc.rst
    M doc/manual/source/second_moment.rst
    M doc/manual/source/simparams.rst
    M doc/manual/source/solutions/index.rst
    M doc/manual/source/solutions/solution_edit.rst
    M doc/manual/source/solutions/solution_new.rst
    M doc/manual/source/solutions/solution_select.rst
    M doc/manual/source/solutions/solution_settings.rst
    M doc/manual/source/temp.txt
    M doc/manual/source/time_derivative.rst
    M doc/manual/source/tmst_viewer.rst
    M doc/manual/source/us_buoyancy.rst
    M doc/manual/source/us_edit.rst
    M doc/manual/source/us_equiltime.rst
    M doc/manual/source/us_extinction.rst
    M doc/manual/source/us_fds_filemanager.rst
    M doc/manual/source/us_investigator.rst
    M doc/manual/source/us_modelmetrics.rst
    M doc/manual/source/us_project.rst
    M doc/manual/source/us_spectrum.rst
    M doc/manual/source/vhw_combine.rst
    M doc/manual/source/vhw_distrib_plot.rst
    M doc/manual/source/vhw_enhanced.rst
    M doc/manual/source/xpn_viewer.rst

  Log Message:
  -----------
  fix: change qthelp url to use manual instead of doc, use right project structure for images and update links


  Commit: b33c9b1cddd853e103542e10c4328830fc59e944
      https://github.com/ehb54/ultrascan3/commit/b33c9b1cddd853e103542e10c4328830fc59e944
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    A admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
    M admin/cmake/packaging/windows/WinDeploy.cmake
    A admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
    M doc/manual/CMakeLists.txt
    R doc/manual/StageAssistant.cmake
    M programs/us/CMakeLists.txt
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  mod: windows and macos qt assistant fix


  Commit: adb74a9f1e5a1e238c264228544137f56a4125b5
      https://github.com/ehb54/ultrascan3/commit/adb74a9f1e5a1e238c264228544137f56a4125b5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  fix: builddir set at the beginning


  Commit: cea2ea0e77baf6dbcc9097b3062ede36ca70f800
      https://github.com/ehb54/ultrascan3/commit/cea2ea0e77baf6dbcc9097b3062ede36ca70f800
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M doc/manual/CMakeLists.txt
    M scripts/build.ps1

  Log Message:
  -----------
  fix: windows path issues


  Commit: 99a443309500f6d44fde4d4ba640770dfadeec24
      https://github.com/ehb54/ultrascan3/commit/99a443309500f6d44fde4d4ba640770dfadeec24
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
    M doc/manual/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_helpdaemon/us_helpdaemon.cpp

  Log Message:
  -----------
  fix: windows missing dll


  Commit: 399ad6ee7636d4885c37adff02b723d1e6af48c9
      https://github.com/ehb54/ultrascan3/commit/399ad6ee7636d4885c37adff02b723d1e6af48c9
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    A admin/cmake/packaging/linux/LinuxDeploy.cmake
    A admin/cmake/packaging/linux/LinuxPkg.cmake
    M scripts/build.sh
    M utils/CMakeLists.txt

  Log Message:
  -----------
  add: linux cmake packaging


  Commit: c3215226c1e826bd7c620115a98fe3694cfe771e
      https://github.com/ehb54/ultrascan3/commit/c3215226c1e826bd7c620115a98fe3694cfe771e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.sh
    M utils/us_memory.cpp

  Log Message:
  -----------
  fix: cross platform page size


  Commit: 16d1f75e51f11ad87c8f18b11e0a8a2bb755ea44
      https://github.com/ehb54/ultrascan3/commit/16d1f75e51f11ad87c8f18b11e0a8a2bb755ea44
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M admin/cmake/packaging/linux/LinuxDeploy.cmake
    M scripts/build.ps1
    M scripts/build.sh
    M vcpkg.json

  Log Message:
  -----------
  fix: assistant on linux


  Commit: 5ab554ce68ae411774740695115c51b480df8c8a
      https://github.com/ehb54/ultrascan3/commit/5ab554ce68ae411774740695115c51b480df8c8a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  fix: vcpkg cache clear


  Commit: a8b6e9963d8ed447dc737af6b4e3b69c3894945f
      https://github.com/ehb54/ultrascan3/commit/a8b6e9963d8ed447dc737af6b4e3b69c3894945f
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  fix: vcpkg cache clear fix


  Commit: 19f656eb532b2218880402623455153763d66d50
      https://github.com/ehb54/ultrascan3/commit/19f656eb532b2218880402623455153763d66d50
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt

  Log Message:
  -----------
  fix: assistant now copied to bin on dev build


  Commit: 75e0dc23de6fbdd330b322115c640d973e916d02
      https://github.com/ehb54/ultrascan3/commit/75e0dc23de6fbdd330b322115c640d973e916d02
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt

  Log Message:
  -----------
  fix: assistant find update


  Commit: 57f162e692e1a548bb426454e7e768e6f68b1bc4
      https://github.com/ehb54/ultrascan3/commit/57f162e692e1a548bb426454e7e768e6f68b1bc4
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M programs/us/us.cpp

  Log Message:
  -----------
  fix: program path issue


  Commit: 4700970e14e8ef1bf44b3fe91efd8dbcd15ba544
      https://github.com/ehb54/ultrascan3/commit/4700970e14e8ef1bf44b3fe91efd8dbcd15ba544
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt

  Log Message:
  -----------
  fix: assistant not found


  Commit: 14d6c7e63b928fb3a73559fdafa9426502eda98c
      https://github.com/ehb54/ultrascan3/commit/14d6c7e63b928fb3a73559fdafa9426502eda98c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  fix: guard specific macos required tools


  Commit: 1c6be4ed0464373db7a5a1a6a780f17bc12dbcf5
      https://github.com/ehb54/ultrascan3/commit/1c6be4ed0464373db7a5a1a6a780f17bc12dbcf5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/linux/LinuxDeploy.cmake

  Log Message:
  -----------
  fix: missing library in pkg


  Commit: 216860fe02c9358e021e6a54b84aa2aa0e462a99
      https://github.com/ehb54/ultrascan3/commit/216860fe02c9358e021e6a54b84aa2aa0e462a99
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  fix: rcc error


  Commit: be038ad56e172897c3f18b8a1319fced62a708a0
      https://github.com/ehb54/ultrascan3/commit/be038ad56e172897c3f18b8a1319fced62a708a0
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M admin/cmake/packaging/linux/LinuxDeploy.cmake

  Log Message:
  -----------
  fix: update plugin directory


  Commit: 87c38bbe59db529cf02b7887c7bfe57ebc8e62da
      https://github.com/ehb54/ultrascan3/commit/87c38bbe59db529cf02b7887c7bfe57ebc8e62da
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/linux/LinuxDeploy.cmake

  Log Message:
  -----------
  add: readme


  Commit: f4323bc883bb8996c6e627bfb9b8295063ef176f
      https://github.com/ehb54/ultrascan3/commit/f4323bc883bb8996c6e627bfb9b8295063ef176f
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    M admin/cmake/GenerateVersion.cmake
    A admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcPkg.cmake
    A admin/cmake/packaging/macos/MacHpcDeploy.cmake
    A admin/cmake/packaging/macos/MacHpcPkg.cmake
    M programs/CMakeLists.txt
    M programs/us_mpi_analysis/2dsa_worker.cpp
    M programs/us_mpi_analysis/CMakeLists.txt
    M programs/us_mpi_analysis/pcsa_worker.cpp
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M scripts/build.sh

  Log Message:
  -----------
  fix: hpc build


  Commit: c515903ce23bec6067e47ed10ae663518f3de230
      https://github.com/ehb54/ultrascan3/commit/c515903ce23bec6067e47ed10ae663518f3de230
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  mod: use all cores with CI runners


  Commit: 7a8a012754d242634bca20501e1a1c94be231d6c
      https://github.com/ehb54/ultrascan3/commit/7a8a012754d242634bca20501e1a1c94be231d6c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M CMakePresets.json
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  fix: CI runners and hpc build


  Commit: 5277352caa620430b2bf8a580f9f10d43218d930
      https://github.com/ehb54/ultrascan3/commit/5277352caa620430b2bf8a580f9f10d43218d930
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  fix: not all dependencies found


  Commit: 60b1b16425fcda080aea3bfac20f1abad9e8bc32
      https://github.com/ehb54/ultrascan3/commit/60b1b16425fcda080aea3bfac20f1abad9e8bc32
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  fix: dependenies added


  Commit: 3b29d9afdd3d29c7e33af7f0b989ccf1c642bc8c
      https://github.com/ehb54/ultrascan3/commit/3b29d9afdd3d29c7e33af7f0b989ccf1c642bc8c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    A scripts/bootstrap-deps.sh
    A scripts/bootstrap-macos.sh
    A scripts/bootstrap-windows.ps1
    A scripts/bootstrap.bat
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  fix: bootstrap deps


  Commit: 4975707ad3f001539ceeea7d716043118c23d07a
      https://github.com/ehb54/ultrascan3/commit/4975707ad3f001539ceeea7d716043118c23d07a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    A buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    M scripts/bootstrap-deps.sh

  Log Message:
  -----------
  fix: qt5 tools overlay


  Commit: e7e0613e5d7d234f835e4e9490416e0a7f5b9803
      https://github.com/ehb54/ultrascan3/commit/e7e0613e5d7d234f835e4e9490416e0a7f5b9803
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/bootstrap-deps.sh
    M scripts/bootstrap-macos.sh
    M scripts/build.sh
    A us-build

  Log Message:
  -----------
  add: bash wrapper


  Commit: b93b52b3acb64a650854a16f3983473f49becee9
      https://github.com/ehb54/ultrascan3/commit/b93b52b3acb64a650854a16f3983473f49becee9
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  mod: make profile positional for powershell


  Commit: dfec7b06f5af8e9ad31d7b4c682197a103bd5fb1
      https://github.com/ehb54/ultrascan3/commit/dfec7b06f5af8e9ad31d7b4c682197a103bd5fb1
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/bootstrap-windows.ps1
    M scripts/build.bat

  Log Message:
  -----------
  fix: convert -- pkg to - pkg for windows


  Commit: 2f98f90faa5b640815d571359919c09034a266c1
      https://github.com/ehb54/ultrascan3/commit/2f98f90faa5b640815d571359919c09034a266c1
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/bootstrap-windows.ps1

  Log Message:
  -----------
  fix: getwin


  Commit: 7249d6b2d508075f65d61b2643639c789db68d8e
      https://github.com/ehb54/ultrascan3/commit/7249d6b2d508075f65d61b2643639c789db68d8e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/bootstrap-windows.ps1

  Log Message:
  -----------
  fix: add chocolatey fallback for ci


  Commit: 45140eeddd64e45d6b5c87061f79c9aefc3ce25e
      https://github.com/ehb54/ultrascan3/commit/45140eeddd64e45d6b5c87061f79c9aefc3ce25e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    M programs/us/revision.sh
    M scripts/build.ps1

  Log Message:
  -----------
  fix: windows CI vcpkg cache usage


  Commit: 1ec6ec52d283b6c710abe095ebcad82139a64ae3
      https://github.com/ehb54/ultrascan3/commit/1ec6ec52d283b6c710abe095ebcad82139a64ae3
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M CMakePresets.json
    M scripts/build.sh

  Log Message:
  -----------
  add: macos intel build


  Commit: 39ad33c5c781b0f007822456803df7d591795fe7
      https://github.com/ehb54/ultrascan3/commit/39ad33c5c781b0f007822456803df7d591795fe7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  fix: vcpkg CI handling


  Commit: 7fad3a4dfaa187ad4eb94554cedbe3ec6cf56773
      https://github.com/ehb54/ultrascan3/commit/7fad3a4dfaa187ad4eb94554cedbe3ec6cf56773
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_mpi_analysis/revision.sh

  Log Message:
  -----------
  fix: change revision to git_revision to be consistent with other programs


  Commit: b4417a6bfd0cfcc840668d21e88718e957734e47
      https://github.com/ehb54/ultrascan3/commit/b4417a6bfd0cfcc840668d21e88718e957734e47
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M test/utils/test_us_time_state.cpp
    M utils/libus_utils.pro
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: f0c8ede548bfb3a6f2380059dd1aacf09c6a7883
      https://github.com/ehb54/ultrascan3/commit/f0c8ede548bfb3a6f2380059dd1aacf09c6a7883
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/bootstrap-macos.sh

  Log Message:
  -----------
  fix: add missing dependencies


  Commit: 09eeb4bec49931c943f732f024f1166b882c3e3a
      https://github.com/ehb54/ultrascan3/commit/09eeb4bec49931c943f732f024f1166b882c3e3a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M test/utils/test_us_time_state.cpp
    M utils/libus_utils.pro
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2


  Commit: 51ba58286eaaa41af877ff9330d19560633e1c16
      https://github.com/ehb54/ultrascan3/commit/51ba58286eaaa41af877ff9330d19560633e1c16
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/bootstrap-macos.sh

  Log Message:
  -----------
  fix: add missing dependencies


  Commit: 21a5f4a7ad52a67040b9426ed30a082038813498
      https://github.com/ehb54/ultrascan3/commit/21a5f4a7ad52a67040b9426ed30a082038813498
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: reduce linux disk space usage


  Commit: 12b7e30a17e5c86f8e9d4960f7e8da86d67b3b4f
      https://github.com/ehb54/ultrascan3/commit/12b7e30a17e5c86f8e9d4960f7e8da86d67b3b4f
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: removed vcpkg folder creation


  Commit: ece15a944fb55077213717e00f084056004367a7
      https://github.com/ehb54/ultrascan3/commit/ece15a944fb55077213717e00f084056004367a7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinDeploy.cmake

  Log Message:
  -----------
  mod: change qt warnings an error to force build to stop


  Commit: 80474c759ff865d72c8c6043ba64d38bf98e1e15
      https://github.com/ehb54/ultrascan3/commit/80474c759ff865d72c8c6043ba64d38bf98e1e15
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: reduce to 2 cores for ubuntu


  Commit: c4af75ba6a8e299d819034f87528f9d6997e469f
      https://github.com/ehb54/ultrascan3/commit/c4af75ba6a8e299d819034f87528f9d6997e469f
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 0f81d3f0d1fb567b1e570ed90147a17f49e57c1f
      https://github.com/ehb54/ultrascan3/commit/0f81d3f0d1fb567b1e570ed90147a17f49e57c1f
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    M admin/cmake/packaging/windows/WinDeploy.cmake
    R scripts/bootstrap-deps.sh
    A scripts/bootstrap-linux.sh
    M scripts/bootstrap-macos.sh
    M scripts/build.sh
    M utils/CMakeLists.txt
    M vcpkg.json

  Log Message:
  -----------
  mod: move checks to bootstrap


  Commit: 4ff50388194860753c3e8bc4d697e944ce0f1641
      https://github.com/ehb54/ultrascan3/commit/4ff50388194860753c3e8bc4d697e944ce0f1641
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2


  Commit: 82349a16124679984a45c562feb3f2583dbdb531
      https://github.com/ehb54/ultrascan3/commit/82349a16124679984a45c562feb3f2583dbdb531
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: add platform safe check


  Commit: 8a2d982f8e8906a85bfe363487622d59a1ff361e
      https://github.com/ehb54/ultrascan3/commit/8a2d982f8e8906a85bfe363487622d59a1ff361e
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 6d361b64fc8f314fe8399f028d2c79ef9d0e417b
      https://github.com/ehb54/ultrascan3/commit/6d361b64fc8f314fe8399f028d2c79ef9d0e417b
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: clean after build set


  Commit: 5b81b9c41fc973670663047afba591d6edaa898c
      https://github.com/ehb54/ultrascan3/commit/5b81b9c41fc973670663047afba591d6edaa898c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinDeploy.cmake

  Log Message:
  -----------
  fix: packaging


  Commit: 3afad49842a3c53daabf741428b683cb8e86837c
      https://github.com/ehb54/ultrascan3/commit/3afad49842a3c53daabf741428b683cb8e86837c
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: afdf12344c5555d4130fa310bf352f2c27bbdadc
      https://github.com/ehb54/ultrascan3/commit/afdf12344c5555d4130fa310bf352f2c27bbdadc
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    A buildsys/vcpkg/overlay-ports/qttools.disable/devendor-litehtml.patch
    A buildsys/vcpkg/overlay-ports/qttools.disable/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools.disable/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qttools.disable/windeployqt.debug.bat
    R buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
    R buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
    R buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
    R buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat

  Log Message:
  -----------
  test remove qttools overlay


  Commit: 691c2112f822e5f82f6f153dbb8d568663367a2c
      https://github.com/ehb54/ultrascan3/commit/691c2112f822e5f82f6f153dbb8d568663367a2c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2


  Commit: 5fbfc3b610b9edaa535c2cdde484daba5a1f6d23
      https://github.com/ehb54/ultrascan3/commit/5fbfc3b610b9edaa535c2cdde484daba5a1f6d23
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinDeploy.cmake
    A buildsys/vcpkg/overlay-ports/qt5-tools/fix-pkgconfig-qt5uiplugin-not-found.patch
    A buildsys/vcpkg/overlay-ports/qt5-tools/fix-spawnvp-argv.patch
    A buildsys/vcpkg/overlay-ports/qt5-tools/libclang.patch
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    M buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    M scripts/bootstrap-windows.ps1
    M scripts/build.ps1

  Log Message:
  -----------
  fix: restore patch for qt5-tools


  Commit: ee9314b8a10555d579148933ce5fb59dc77f25a5
      https://github.com/ehb54/ultrascan3/commit/ee9314b8a10555d579148933ce5fb59dc77f25a5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinDeploy.cmake
    M scripts/bootstrap-windows.ps1

  Log Message:
  -----------
  fix: nasm check and add supporting dlls to installation


  Commit: f9860bd8d1ac6f5c5c4a4b0dd90e3cb7f09bd131
      https://github.com/ehb54/ultrascan3/commit/f9860bd8d1ac6f5c5c4a4b0dd90e3cb7f09bd131
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M scripts/build.ps1
    M vcpkg.json

  Log Message:
  -----------
  mod: check path length is too long on qt 5


  Commit: 4365eb02a1c29a38a42fe848da39deab69e67715
      https://github.com/ehb54/ultrascan3/commit/4365eb02a1c29a38a42fe848da39deab69e67715
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    R buildsys/vcpkg/overlay-ports/qttools.disable/devendor-litehtml.patch
    R buildsys/vcpkg/overlay-ports/qttools.disable/portfile.cmake
    R buildsys/vcpkg/overlay-ports/qttools.disable/vcpkg.json
    R buildsys/vcpkg/overlay-ports/qttools.disable/windeployqt.debug.bat

  Log Message:
  -----------
  del: remove unused overlay


  Commit: efe1a2ba8b277a19ae50d1262c14239f9f9dac81
      https://github.com/ehb54/ultrascan3/commit/efe1a2ba8b277a19ae50d1262c14239f9f9dac81
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M scripts/bootstrap-linux.sh

  Log Message:
  -----------
  add: missing linux packages libsm-dev libice-dev


  Commit: 84f1faaa0819a233d3023bd3ae0d75d2ccaf6430
      https://github.com/ehb54/ultrascan3/commit/84f1faaa0819a233d3023bd3ae0d75d2ccaf6430
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    A buildsys/vcpkg/overlay-ports/mpg123/fix-arm64-no-fpu-neon64.patch
    A buildsys/vcpkg/overlay-ports/mpg123/have-fpu.diff
    A buildsys/vcpkg/overlay-ports/mpg123/pkgconfig.diff
    A buildsys/vcpkg/overlay-ports/mpg123/portfile.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/vcpkg.json

  Log Message:
  -----------
  add: port overlay for linux arm fix


  Commit: 501adedca88f7d331c3a70d62c04cc4992f86979
      https://github.com/ehb54/ultrascan3/commit/501adedca88f7d331c3a70d62c04cc4992f86979
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/macos/MacDeploy.cmake
    M admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
    A admin/cmake/packaging/macos/StageAssistantDev.cmake
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
    A buildsys/vcpkg/overlay-ports/qttools/port.data.cmake
    A buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat
    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
    M programs/us/CMakeLists.txt
    M scripts/build.sh

  Log Message:
  -----------
  add: overlay port for qttools


  Commit: e1e93704ad79bf8d43c6c4eba74a4c90b1dc1fdf
      https://github.com/ehb54/ultrascan3/commit/e1e93704ad79bf8d43c6c4eba74a4c90b1dc1fdf
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 81695e7ad3f97f7cd46fe42d8148a8911fc3fc43
      https://github.com/ehb54/ultrascan3/commit/81695e7ad3f97f7cd46fe42d8148a8911fc3fc43
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: bed8960f5d491db022be512a82491fc248abcbf9
      https://github.com/ehb54/ultrascan3/commit/bed8960f5d491db022be512a82491fc248abcbf9
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M doc/manual/CMakeLists.txt
    M doc/manual/README.md
    M doc/manual/source/conf.py
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  mod: PR comments addressed


  Commit: 5205cb5542bd366b63909189ac9691c6473fc071
      https://github.com/ehb54/ultrascan3/commit/5205cb5542bd366b63909189ac9691c6473fc071
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2


  Commit: 76e772666ba74f76a6d525444b9c0cd8f9d01e76
      https://github.com/ehb54/ultrascan3/commit/76e772666ba74f76a6d525444b9c0cd8f9d01e76
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M doc/manual/CMakeLists.txt

  Log Message:
  -----------
  fix: skip subdirectory doc/manual if hpc or documentation off


  Commit: 05b438d52cffda88429e278cae66fead57b193ec
      https://github.com/ehb54/ultrascan3/commit/05b438d52cffda88429e278cae66fead57b193ec
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M CMakePresets.json
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    R doc/manual/source/conf.py-orig.081225
    M gui/CMakeLists.txt
    M programs/us_helpdaemon/us_helpdaemon.cpp

  Log Message:
  -----------
  fix: Reformat CMakePresets.json to multi-line style; add US3_NO_DB=ON to all HPC
     presets; fix GLU elseif(UNIX) branch; drop dead Windows assistant path check.


  Commit: 21882cd1fd05a489de72b721e1e4bebaa8fb9ac5
      https://github.com/ehb54/ultrascan3/commit/21882cd1fd05a489de72b721e1e4bebaa8fb9ac5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M doc/manual/CMakeLists.txt
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  fix: pr comments


  Commit: 39a94736afc6e6b1450549833138c494fc1ff36b
      https://github.com/ehb54/ultrascan3/commit/39a94736afc6e6b1450549833138c494fc1ff36b
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M doc/manual/Makefile

  Log Message:
  -----------
  fix: make all moved to top


  Commit: 55ad77b5ea4726efff74c2e3da2b763af7b12070
      https://github.com/ehb54/ultrascan3/commit/55ad77b5ea4726efff74c2e3da2b763af7b12070
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    M doc/manual/CMakeLists.txt

  Log Message:
  -----------
  fix: presets


  Commit: 8aeda75b69a9c2d9df2af035ea7265bb93bdacef
      https://github.com/ehb54/ultrascan3/commit/8aeda75b69a9c2d9df2af035ea7265bb93bdacef
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-21 (Sat, 21 Mar 2026)

  Changed paths:
    A admin/cmake/README.md
    A admin/cmake/packaging/README.md
    A pkg/macos/README.md

  Log Message:
  -----------
  mod: readmes


  Commit: 81c3a3a5d2a743645b19098027b58ecdc429d634
      https://github.com/ehb54/ultrascan3/commit/81c3a3a5d2a743645b19098027b58ecdc429d634
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-22 (Sun, 22 Mar 2026)

  Changed paths:
    R doc/manual/source/2dsa/2dsa_adv.rst
    R doc/manual/source/2dsa/2dsa_analys.rst
    R doc/manual/source/2dsa/2dsa_main.rst
    R doc/manual/source/2dsa/index.rst
    R doc/manual/source/3d_plot.rst
    R doc/manual/source/analyte/analyte_edit.rst
    R doc/manual/source/analyte/analyte_new.rst
    R doc/manual/source/analyte/analyte_select.rst
    R doc/manual/source/analyte/analyte_settings.rst
    R doc/manual/source/analyte/index.rst
    R doc/manual/source/associations.rst
    R doc/manual/source/astfem_sim.rst
    R doc/manual/source/beckman_openauc.rst
    R doc/manual/source/buffer/buffer_edit.rst
    R doc/manual/source/buffer/buffer_new.rst
    R doc/manual/source/buffer/buffer_select.rst
    R doc/manual/source/buffer/buffer_settings.rst
    R doc/manual/source/buffer/index.rst
    R doc/manual/source/buoyancy_editor.rst
    R doc/manual/source/colorgradient.rst
    R doc/manual/source/combine_models.rst
    R doc/manual/source/common_dialogs.rst
    R doc/manual/source/components.rst
    R doc/manual/source/config.rst
    R doc/manual/source/convert.rst
    R doc/manual/source/ddist_combine.rst
    R doc/manual/source/dens_match.rst
    R doc/manual/source/dmga_init.rst
    R doc/manual/source/dmga_init_constr.rst
    R doc/manual/source/experiment/cells.rst
    R doc/manual/source/experiment/general.rst
    R doc/manual/source/experiment/import.rst
    R doc/manual/source/experiment/index.rst
    R doc/manual/source/experiment/liveupdate.rst
    R doc/manual/source/experiment/optics.rst
    R doc/manual/source/experiment/range.rst
    R doc/manual/source/experiment/rotor.rst
    R doc/manual/source/experiment/solutions.rst
    R doc/manual/source/experiment/speeds.rst
    R doc/manual/source/experiment/submit.rst
    R doc/manual/source/export_legacy.rst
    R doc/manual/source/fe_match/fe_match_adv.rst
    R doc/manual/source/fe_match/fe_match_main.rst
    R doc/manual/source/fe_match/fe_match_simulate.rst
    R doc/manual/source/fe_match/index.rst
    R doc/manual/source/fit_meniscus.rst
    R doc/manual/source/ga_initialize.rst
    R doc/manual/source/gmp/gmp.rst
    R doc/manual/source/gmp/gmp_audit_trail.rst
    R doc/manual/source/gmp/gmp_automation.rst
    R doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst
    R doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst
    R doc/manual/source/gmp/gmp_data_acquisition/index.rst
    R doc/manual/source/gmp/gmp_protocol_development.rst
    R doc/manual/source/gmp/gmp_report_generator.rst
    R doc/manual/source/gmp/gmp_signature.rst
    R doc/manual/source/gmp/index.rst
    R doc/manual/source/grid_editor.rst
    R doc/manual/source/idist_combine.rst
    R doc/manual/source/images/2dsa_3dplot.png
    R doc/manual/source/images/2dsa_advan.png
    R doc/manual/source/images/2dsa_analvv.png
    R doc/manual/source/images/2dsa_analys.png
    R doc/manual/source/images/2dsa_main-c.png
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    R doc/manual/source/images/2dsa_resplot.png
    R doc/manual/source/images/D20W_bar.png
    R doc/manual/source/images/MW-bar.png
    R doc/manual/source/images/RINplot.png
    R doc/manual/source/images/TINplot.png
    R doc/manual/source/images/UltraScan-logo.png
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    R doc/manual/source/images/add_TIN.png
    R doc/manual/source/images/advanced_config.png
    R doc/manual/source/images/analyte_details.png
    R doc/manual/source/images/analyte_edit.png
    R doc/manual/source/images/analyte_edit_spec.png
    R doc/manual/source/images/analyte_new_sequence.png
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    R doc/manual/source/images/analyte_sequence.png
    R doc/manual/source/images/analyte_settings.png
    R doc/manual/source/images/analyte_spec-gui.png
    R doc/manual/source/images/analyte_specmenu.png
    R doc/manual/source/images/analyte_spectrum.png
    R doc/manual/source/images/analytes.png
    R doc/manual/source/images/associations.png
    R doc/manual/source/images/astfem_sim.png
    R doc/manual/source/images/bad_grid.png
    R doc/manual/source/images/beck_convert-2.png
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    R doc/manual/source/images/bitmap.png
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    R doc/manual/source/images/buffer_edit_spectrum.png
    R doc/manual/source/images/buffer_info.png
    R doc/manual/source/images/buffer_manage_spectrum.png
    R doc/manual/source/images/buffer_new.png
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    R doc/manual/source/images/buffer_settings.png
    R doc/manual/source/images/buffer_spectrum.png
    R doc/manual/source/images/cfa_view-loadauc.png
    R doc/manual/source/images/cfa_view-loadraw.png
    R doc/manual/source/images/cfa_view-main.png
    R doc/manual/source/images/cfa_view-statsauc.png
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    R doc/manual/source/images/color-1.png
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    R doc/manual/source/images/colorgrad1.png
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    R doc/manual/source/images/densmatch_rmvmodels.png
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    R doc/manual/source/images/eq1-mean.png
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    R doc/manual/source/images/experiment_overview.png
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    R doc/manual/source/images/experiment_rotor.png
    R doc/manual/source/images/experiment_solutions.png
    R doc/manual/source/images/experiment_solutions_comments.png
    R doc/manual/source/images/experiment_speeds.png
    R doc/manual/source/images/experiment_submit.png
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    R doc/manual/source/images/experiment_upload.png
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  Log Message:
  -----------
  mod: removed documentation.


  Commit: f448548065ff12b1c240270de9d4827cf5f51a79
      https://github.com/ehb54/ultrascan3/commit/f448548065ff12b1c240270de9d4827cf5f51a79
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-24 (Tue, 24 Mar 2026)

  Changed paths:
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    M .gitignore
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    M CMakePresets.json
    M LICENSE.txt
    M README.manual
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    A admin/cmake/packaging/linux/LinuxHpcPkg.cmake
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    A admin/cmake/packaging/macos/MacDeploy.cmake
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    M admin/cmake/toolchain.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/fix-arm64-no-fpu-neon64.patch
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    R doc/manual/master_pw.body
    R doc/manual/model_editor.body
    R doc/manual/mwlr_view_load.body
    R doc/manual/mwlr_view_pltctrl.body
    R doc/manual/mwlr_viewer.body
    R doc/manual/optima_host_config.body
    R doc/manual/pcsa.body
    R doc/manual/pcsa_analys.body
    R doc/manual/pcsa_mlines.body
    R doc/manual/pcsa_rpscan.body
    R doc/manual/predict1.body
    R doc/manual/predict2.body
    R doc/manual/pseudo3d_comb_rmv.body
    R doc/manual/pseudo3d_combine.body
    R doc/manual/register.body
    R doc/manual/reporter.body
    R doc/manual/rotor.body
    R doc/manual/rotorstretch.body
    R doc/manual/sassoc.body
    R doc/manual/save_colormap.body
    R doc/manual/second_moment.body
    R doc/manual/select_edits.body
    R doc/manual/select_runs.body
    R doc/manual/simparams.body
    R doc/manual/somo.body
    A doc/manual/source/_static/css/custom.css
    A doc/manual/source/_static/js/language_data.js
    A doc/manual/source/_static/js/sphinx_highlight.js
    A doc/manual/source/conf.py
    A doc/manual/source/index.rst
    A doc/manual/source/requirements.txt
    R doc/manual/template.img.body
    R doc/manual/tidy.conf
    R doc/manual/time_derivative.body
    R doc/manual/ultrascan3.txt
    R doc/manual/us_buffer.body
    R doc/manual/us_edit.body
    R doc/manual/us_edit_mwl.body
    R doc/manual/us_equiltime.body
    R doc/manual/us_fds_filemanager.body
    R doc/manual/us_investigator.body
    R doc/manual/us_modelmetrics.body
    R doc/manual/us_project.body
    R doc/manual/us_solution.body
    R doc/manual/uscol.body
    R doc/manual/uscolor2.body
    R doc/manual/usfont.body
    R doc/manual/usfont2.body
    R doc/manual/vhw_combine.body
    R doc/manual/vhw_distrib_plot.body
    R doc/manual/vhw_enhanced.body
    R doc/manual/wrapped-images.lst
    M gui/CMakeLists.txt
    M gui/us_help.cpp
    M makeall.sh
    A pkg/macos/README.md
    A pkg/macos/component.plist
    A pkg/macos/distribution.xml.in
    A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist
    A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3
    A pkg/macos/postinstall
    A pkg/macos/preinstall
    A pkg/macos/resources/Welcome.txt.in
    A pkg/macos/resources/background.png
    A pkg/macos/ultrascan_sysctl.plist
    A pkg/macos/uninstall.sh
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us/revision.sh
    M programs/us/us.cpp
    M programs/us_helpdaemon/us_helpdaemon.cpp
    M programs/us_mpi_analysis/2dsa_worker.cpp
    M programs/us_mpi_analysis/CMakeLists.txt
    M programs/us_mpi_analysis/pcsa_worker.cpp
    M programs/us_mpi_analysis/revision.sh
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M qwtplot3d/CMakeLists.txt
    A scripts/bootstrap-linux.sh
    A scripts/bootstrap-macos.sh
    A scripts/bootstrap-windows.ps1
    A scripts/bootstrap.bat
    M scripts/build.bat
    M scripts/build.ps1
    M scripts/build.sh
    A us-build
    M utils/CMakeLists.txt
    M utils/us_memory.cpp
    M vcpkg.json

  Log Message:
  -----------
  Merge pull request #374 from ehb54/527-enhancement-sphinx-migration-2

Integrate Sphinx Document Generation


Compare: https://github.com/ehb54/ultrascan3/compare/cb192562f441...f448548065ff

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From noreply at github.com  Tue Mar 24 10:01:31 2026
From: noreply at github.com (aaron-auc)
Date: Tue, 24 Mar 2026 09:01:31 -0700
Subject: [us-commits] [ehb54/ultrascan3] 254289: ACAB doubled
Message-ID: <ehb54/ultrascan3/push/refs/heads/ehb54-issue-670/10e620-0a9196@github.com>

  Branch: refs/heads/ehb54-issue-670
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 2542899201e17dd085de687f6fdfe671fa123bdb
      https://github.com/ehb54/ultrascan3/commit/2542899201e17dd085de687f6fdfe671fa123bdb
  Author: Haben Gabir <haben.gabir at uleth.ca>
  Date:   2026-01-22 (Thu, 22 Jan 2026)

  Changed paths:
    A doc/manual/source/#Makefile#
    A doc/manual/source/2dsa/2dsa_adv.rst
    A doc/manual/source/2dsa/2dsa_analys.rst
    A doc/manual/source/2dsa/2dsa_main.rst
    A doc/manual/source/2dsa/index.rst
    A doc/manual/source/3d_plot.rst
    A doc/manual/source/_static/css/custom.css
    A doc/manual/source/_static/custom.css
    A doc/manual/source/_static/images/2dsa_3dplot.png
    A doc/manual/source/_static/images/2dsa_advan.png
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    A doc/manual/source/_static/images/D20W_bar.png
    A doc/manual/source/_static/images/MW-bar.png
    A doc/manual/source/_static/images/RINplot.png
    A doc/manual/source/_static/images/TINplot.png
    A doc/manual/source/_static/images/UltraScan-logo.png
    A doc/manual/source/_static/images/add_RIN-TIN.png
    A doc/manual/source/_static/images/add_RIN.png
    A doc/manual/source/_static/images/add_TIN.png
    A doc/manual/source/_static/images/advanced_config.png
    A doc/manual/source/_static/images/analyte_details.png
    A doc/manual/source/_static/images/analyte_edit.png
    A doc/manual/source/_static/images/analyte_edit_spec.png
    A doc/manual/source/_static/images/analyte_new_sequence.png
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    A doc/manual/source/us_fds_filemanager.rst
    A doc/manual/source/us_investigator.rst
    A doc/manual/source/us_modelmetrics.rst
    A doc/manual/source/us_project.rst
    A doc/manual/source/us_spectrum.rst
    A doc/manual/source/vhw_combine.rst
    A doc/manual/source/vhw_distrib_plot.rst
    A doc/manual/source/vhw_enhanced.rst
    A doc/manual/source/xpn_viewer.rst

  Log Message:
  -----------
  ACAB doubled


  Commit: 8617cadc6147eda447864b6626622e9bffa4128e
      https://github.com/ehb54/ultrascan3/commit/8617cadc6147eda447864b6626622e9bffa4128e
  Author: Haben Gabir <haben.gabir at uleth.ca>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
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    A doc/manual/source/_static/images/beck_converter.png
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    M doc/manual/source/beckman_openauc.rst
    M doc/manual/source/buoyancy_editor.rst
    M doc/manual/source/dmga_init.rst
    M doc/manual/source/dmga_init_constr.rst
    M doc/manual/source/experiment/import.rst
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    M doc/manual/source/gmp/gmp_automation.rst
    M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst
    M doc/manual/source/gmp/gmp_protocol_development.rst
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    M doc/manual/source/predict1.rst
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    M doc/manual/source/tmp.rst
    M doc/manual/source/us_buoyancy.rst
    M doc/manual/source/xpn_viewer.rst

  Log Message:
  -----------
  WALICAFB


  Commit: 779bf5e32b16d7eddc415ecc2fe90709ac0026b9
      https://github.com/ehb54/ultrascan3/commit/779bf5e32b16d7eddc415ecc2fe90709ac0026b9
  Author: Haben Gabir <haben.gabir at uleth.ca>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    A .github/workflows/bump-version.yml
    M CMakeLists.txt
    M CMakePresets.json
    A admin/cmake/toolchain-macos.cmake
    A admin/cmake/triplets/arm64-osx-dynamic.cmake
    M admin/cmake/triplets/x64-osx-dynamic.cmake
    R alpha/srcdevel
    R alpha/us.cpp
    M gui/us_analysis_base2.cpp
    M gui/us_analysis_base2.h
    M gui/us_csv_loader.cpp
    M gui/us_model_loader.cpp
    M gui/us_plot.cpp
    M gui/us_report_gui.cpp
    M gui/us_report_gui.h
    M programs/CMakeLists.txt
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    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_2dsa/us_2dsa.h
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
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    M programs/us_experiment/us_proto_ranges.cpp
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    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
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    M programs/us_pcsa/us_pcsa.cpp
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    M programs/us_reporter_gmp/us_reporter_gmp.cpp
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    M programs/us_second_moment/us_second_moment.cpp
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    M programs/us_vhw_enhanced/us_vhw_enhanced.h
    M scripts/build.sh
    A test/utils/test_us_regex.cpp
    M utils/CMakeLists.txt
    M utils/us_csv_data.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/main' into haben-Dev


  Commit: 7bf106993a8f72d94033f56ec908772b1087c0ef
      https://github.com/ehb54/ultrascan3/commit/7bf106993a8f72d94033f56ec908772b1087c0ef
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
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    M README.manual
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    A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat
    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
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    R doc/manual/images/gmp/signature/gmp_signature_06.png
    R doc/manual/images/gmp/signature/gmp_signature_07.png
    R doc/manual/images/gmp/signature/gmp_signature_08.png
    R doc/manual/images/grid_editor.png
    R doc/manual/images/grid_editor_multi_grids.png
    R doc/manual/images/grid_editor_multi_grids_sed.png
    R doc/manual/images/grid_editor_mw_view.png
    R doc/manual/images/grid_editor_subgrid1-bad.png
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    R doc/manual/images/grid_editor_subgrid2-bad.png
    R doc/manual/images/grid_editor_subgrid2-good.png
    R doc/manual/images/grid_editor_subgrid3-bad.png
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    R doc/manual/images/load_auc-search.png
    R doc/manual/images/load_auc-trips.png
    R doc/manual/images/load_auc.png
    R doc/manual/images/load_colormap.png
    R doc/manual/images/load_model_dis-MID.png
    R doc/manual/images/load_model_distrib.png
    R doc/manual/images/load_noise.png
    R doc/manual/images/load_noise_details.png
    R doc/manual/images/manage_data.png
    R doc/manual/images/manage_data_bhide.png
    R doc/manual/images/manage_data_bshow.png
    R doc/manual/images/manage_data_cmenu-1.png
    R doc/manual/images/manage_data_cmenu-2.png
    R doc/manual/images/manage_data_conf.png
    R doc/manual/images/manage_data_exp.png
    R doc/manual/images/manage_data_pasw.png
    R doc/manual/images/manage_data_sync.png
    R doc/manual/images/manage_data_thelp-1.png
    R doc/manual/images/manage_data_thelp-2.png
    R doc/manual/images/master-pw.png
    R doc/manual/images/model_editor.png
    R doc/manual/images/mwlr_view_3dplot.png
    R doc/manual/images/mwlr_view_load.png
    R doc/manual/images/mwlr_view_pltctrl.png
    R doc/manual/images/mwlr_viewer.png
    R doc/manual/images/mwlr_viewer_xwavl.png
    R doc/manual/images/optima_config_edit.png
    R doc/manual/images/optima_config_new.png
    R doc/manual/images/optima_host_config.png
    R doc/manual/images/pcsa_3dplot.png
    R doc/manual/images/pcsa_analys-line.png
    R doc/manual/images/pcsa_analys-sigm.png
    R doc/manual/images/pcsa_main-c.png
    R doc/manual/images/pcsa_mlines-line1.png
    R doc/manual/images/pcsa_mlines-line2.png
    R doc/manual/images/pcsa_mlines-sigm1.png
    R doc/manual/images/pcsa_mlines-sigm2.png
    R doc/manual/images/pcsa_resplot.png
    R doc/manual/images/pcsa_rpscan-auto.png
    R doc/manual/images/pcsa_rpscan-select.png
    R doc/manual/images/predict1.png
    R doc/manual/images/predict2-1.png
    R doc/manual/images/pseudo3d_comb_rmv.png
    R doc/manual/images/pseudo3d_combine.png
    R doc/manual/images/register.png
    R doc/manual/images/reporter-cmenu.png
    R doc/manual/images/reporter-details.png
    R doc/manual/images/reporter-loadprof.png
    R doc/manual/images/reporter-save.png
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    R doc/manual/images/reporter-view.png
    R doc/manual/images/reporter-viewitem.png
    R doc/manual/images/reporter.png
    R doc/manual/images/rotor-add.png
    R doc/manual/images/rotor-save-calibration.png
    R doc/manual/images/rotor.png
    R doc/manual/images/rotorstretch-0.png
    R doc/manual/images/rotorstretch-1.png
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    R doc/manual/images/sassoc/sassoc_01.png
    R doc/manual/images/sassoc/sassoc_02.png
    R doc/manual/images/save_colormap.png
    R doc/manual/images/second_moment.png
    R doc/manual/images/select_edits.png
    R doc/manual/images/select_runs.png
    R doc/manual/images/sequence.png
    R doc/manual/images/simparams.png
    R doc/manual/images/somo/somo_icon.png
    R doc/manual/images/time_derivative.png
    R doc/manual/images/ultra.xpm
    R doc/manual/images/ultrascan3.png
    R doc/manual/images/us_buffer.png
    R doc/manual/images/us_buffer_spect.png
    R doc/manual/images/us_convert/us_convert_01.png
    R doc/manual/images/us_convert/us_convert_02.png
    R doc/manual/images/us_convert/us_convert_03.png
    R doc/manual/images/us_convert/us_convert_04.png
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    R doc/manual/images/us_convert/us_convert_09.png
    R doc/manual/images/us_convert/us_convert_10.png
    R doc/manual/images/us_convert/us_convert_11.png
    R doc/manual/images/us_convert/us_convert_12.png
    R doc/manual/images/us_convert/us_convert_13.png
    R doc/manual/images/us_convert/us_convert_14.png
    R doc/manual/images/us_edit.png
    R doc/manual/images/us_edit_mwl.png
    R doc/manual/images/us_equiltime.png
    R doc/manual/images/us_fds_filemanager-0.png
    R doc/manual/images/us_fds_filemanager-1.png
    R doc/manual/images/us_fds_filemanager-2.png
    R doc/manual/images/us_fds_filemanager-3.png
    R doc/manual/images/us_fds_filemanager-4.png
    R doc/manual/images/us_investigator-2.png
    R doc/manual/images/us_investigator.png
    R doc/manual/images/us_modelmetrics-0.png
    R doc/manual/images/us_project1.png
    R doc/manual/images/us_project2.png
    R doc/manual/images/us_project3.png
    R doc/manual/images/us_solution1.png
    R doc/manual/images/us_solution2.png
    R doc/manual/images/us_solution3.png
    R doc/manual/images/usfont-1.png
    R doc/manual/images/usfont-2.png
    R doc/manual/images/vhw_combine-combo.png
    R doc/manual/images/vhw_combine-envel.png
    R doc/manual/images/vhw_combine-selrun.png
    R doc/manual/images/vhw_combine.png
    R doc/manual/images/vhw_distribution.png
    R doc/manual/images/vhw_enh_groups.png
    R doc/manual/images/vhw_enhanced.png
    R doc/manual/images/vhw_histogram.png
    R doc/manual/index.body
    R doc/manual/load/load_auc.body
    R doc/manual/load/load_colormap.body
    R doc/manual/load/load_model_dis-MID.body
    R doc/manual/load/load_model_distrib.body
    R doc/manual/load/load_noise.body
    R doc/manual/load/load_noise_details.body
    R doc/manual/mainstyle.css
    R doc/manual/make-docs.sh
    R doc/manual/make-html.sh
    R doc/manual/make-qdocs.sh
    R doc/manual/make-wraps.sh
    R doc/manual/manage_data.body
    R doc/manual/manage_data_cmenu.body
    R doc/manual/manage_data_thelp.body
    R doc/manual/manual.qhcp
    R doc/manual/manual.qhp
    R doc/manual/master_pw.body
    R doc/manual/model_editor.body
    R doc/manual/mwlr_view_load.body
    R doc/manual/mwlr_view_pltctrl.body
    R doc/manual/mwlr_viewer.body
    R doc/manual/optima_host_config.body
    R doc/manual/pcsa.body
    R doc/manual/pcsa_analys.body
    R doc/manual/pcsa_mlines.body
    R doc/manual/pcsa_rpscan.body
    R doc/manual/predict1.body
    R doc/manual/predict2.body
    R doc/manual/pseudo3d_comb_rmv.body
    R doc/manual/pseudo3d_combine.body
    R doc/manual/register.body
    R doc/manual/reporter.body
    R doc/manual/rotor.body
    R doc/manual/rotorstretch.body
    R doc/manual/sassoc.body
    R doc/manual/save_colormap.body
    R doc/manual/second_moment.body
    R doc/manual/select_edits.body
    R doc/manual/select_runs.body
    R doc/manual/simparams.body
    R doc/manual/somo.body
    R doc/manual/source/#Makefile#
    M doc/manual/source/conf.py
    R doc/manual/source/make.bat
    M doc/manual/source/requirements.txt
    R doc/manual/template.img.body
    R doc/manual/tidy.conf
    R doc/manual/time_derivative.body
    R doc/manual/ultrascan3.txt
    R doc/manual/us_buffer.body
    R doc/manual/us_edit.body
    R doc/manual/us_edit_mwl.body
    R doc/manual/us_equiltime.body
    R doc/manual/us_fds_filemanager.body
    R doc/manual/us_investigator.body
    R doc/manual/us_modelmetrics.body
    R doc/manual/us_project.body
    R doc/manual/us_solution.body
    R doc/manual/uscol.body
    R doc/manual/uscolor2.body
    R doc/manual/usfont.body
    R doc/manual/usfont2.body
    R doc/manual/vhw_combine.body
    R doc/manual/vhw_distrib_plot.body
    R doc/manual/vhw_enhanced.body
    R doc/manual/wrapped-images.lst
    M gui/us_help.cpp
    M makeall.sh
    M scripts/build.sh
    R vcpkg
    M vcpkg.json

  Log Message:
  -----------
  mod: delete legacy help, integrate sphinx help


  Commit: 3d08b0b47f4e2317e53a69e11dc522f164182ec7
      https://github.com/ehb54/ultrascan3/commit/3d08b0b47f4e2317e53a69e11dc522f164182ec7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake

  Log Message:
  -----------
  mod: release only build for macos


  Commit: 7d351ae823d28a24be8d1406165cb8c4887fb1e7
      https://github.com/ehb54/ultrascan3/commit/7d351ae823d28a24be8d1406165cb8c4887fb1e7
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M gui/us_report_gui.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_proto_ranges.cpp

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: d0f42eef0df776ad01ea51cc7505eeb80878b2d8
      https://github.com/ehb54/ultrascan3/commit/d0f42eef0df776ad01ea51cc7505eeb80878b2d8
  Author: Saeed <github.com/samo38>
  Date:   2026-02-23 (Mon, 23 Feb 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: removed unnecessary widgets


  Commit: 534da76a2eb5090416dc3e2fa4416db272ac9b91
      https://github.com/ehb54/ultrascan3/commit/534da76a2eb5090416dc3e2fa4416db272ac9b91
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-24 (Tue, 24 Feb 2026)

  Changed paths:
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_experiment/us_experiment_gui_optima.h

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 98c5f9693e9265ed8f1515603098010def86eb70
      https://github.com/ehb54/ultrascan3/commit/98c5f9693e9265ed8f1515603098010def86eb70
  Author: Saeed <github.com/samo38>
  Date:   2026-02-24 (Tue, 24 Feb 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  rename labels


  Commit: d28e726d4e40aae7be0f55ed03c1e7fe45e36d00
      https://github.com/ehb54/ultrascan3/commit/d28e726d4e40aae7be0f55ed03c1e7fe45e36d00
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-24 (Tue, 24 Feb 2026)

  Changed paths:
    M doc/manual/source/colorgradient.rst
    M doc/manual/source/conf.py
    M doc/manual/source/config.rst
    M doc/manual/source/experiment/range.rst
    M doc/manual/source/export_legacy.rst
    M doc/manual/source/fe_match/fe_match_main.rst
    M doc/manual/source/fe_match/fe_match_simulate.rst
    M doc/manual/source/ga_initialize.rst
    M doc/manual/source/grid_editor.rst
    M doc/manual/source/manage_data.rst
    M doc/manual/source/mwl_spectra.rst
    M doc/manual/source/mwlr_viewer.rst
    M doc/manual/source/pcsa/pcsa_analys.rst
    M doc/manual/source/requirements.txt
    M doc/manual/source/us_project.rst
    M doc/manual/source/vhw_combine.rst

  Log Message:
  -----------
  mod: migrate to sphinx-design from subfigure


  Commit: 8318d566a89cb3e06093e1d79d56d11d3488103a
      https://github.com/ehb54/ultrascan3/commit/8318d566a89cb3e06093e1d79d56d11d3488103a
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    R admin/cmake/toolchain-macos.cmake
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M programs/us/CMakeLists.txt
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 8c545d6f5c77a42afc10d3badcaa8f9b34866f2d
      https://github.com/ehb54/ultrascan3/commit/8c545d6f5c77a42afc10d3badcaa8f9b34866f2d
  Author: Saeed <github.com/samo38>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    R admin/cmake/toolchain-macos.cmake
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M gui/us_report_gui.cpp
    M programs/us/CMakeLists.txt
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    R vcpkg
    M vcpkg.json

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_748


  Commit: 85100ef73842bc75a8f210f7b9038301adae82db
      https://github.com/ehb54/ultrascan3/commit/85100ef73842bc75a8f210f7b9038301adae82db
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M gui/us_spectrodata.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 7f63285b165bc88c2a317f9f368082e0d24d8861
      https://github.com/ehb54/ultrascan3/commit/7f63285b165bc88c2a317f9f368082e0d24d8861
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-28 (Sat, 28 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    A admin/cmake/MacDeploy.cmake
    R buildsys/vcpkg/overlay-ports/qt5-tools/fix-pkgconfig-qt5uiplugin-not-found.patch
    R buildsys/vcpkg/overlay-ports/qt5-tools/fix-spawnvp-argv.patch
    R buildsys/vcpkg/overlay-ports/qt5-tools/libclang.patch
    R buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    R buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    M doc/manual/CMakeLists.txt
    A doc/manual/StageAssistant.cmake
    M doc/manual/source/mwl_spectra.rst
    M gui/CMakeLists.txt
    M gui/us_help.cpp
    M programs/us_helpdaemon/us_helpdaemon.cpp
    M qwtplot3d/CMakeLists.txt
    M scripts/build.sh
    M vcpkg.json

  Log Message:
  -----------
  fix: fix qt help search and implement dmg


  Commit: 8e3d67b30d1a4eaf6faf0d18d80a835288ee5ae7
      https://github.com/ehb54/ultrascan3/commit/8e3d67b30d1a4eaf6faf0d18d80a835288ee5ae7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-28 (Sat, 28 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    R admin/cmake/toolchain-macos.cmake
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M gui/us_spectrodata.h
    M programs/us/CMakeLists.txt
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    M vcpkg.json

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2

# Conflicts:
#	.gitignore
#	scripts/build.sh


  Commit: ef3356b450a93ec526f92ee27da0a9bfcfa9c04a
      https://github.com/ehb54/ultrascan3/commit/ef3356b450a93ec526f92ee27da0a9bfcfa9c04a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-01 (Sun, 01 Mar 2026)

  Changed paths:
    M LICENSE.txt

  Log Message:
  -----------
  fix: text was original utf-8 so quotes became questions marks with ascii tool. Changed ? to ascii quotes.


  Commit: 82c2dc2269b90376cf1f69ca3f88b4bee38c641e
      https://github.com/ehb54/ultrascan3/commit/82c2dc2269b90376cf1f69ca3f88b4bee38c641e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    R admin/cmake/MacDeploy.cmake
    A admin/cmake/packaging/macos/MacDeploy.cmake
    A admin/cmake/packaging/macos/MacOsPkg.cmake
    A pkg/macos/component.plist
    A pkg/macos/distribution.xml.in
    A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist
    A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3
    A pkg/macos/postinstall
    A pkg/macos/preinstall
    A pkg/macos/resources/Welcome.txt.in
    A pkg/macos/resources/background.png
    A pkg/macos/ultrascan_sysctl.plist
    A pkg/macos/uninstall.sh
    M scripts/build.sh

  Log Message:
  -----------
  add: launcher and packaging step


  Commit: 88ef4e481d1b4ea751d997b156e3782f1befce93
      https://github.com/ehb54/ultrascan3/commit/88ef4e481d1b4ea751d997b156e3782f1befce93
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    M admin/cmake/packaging/macos/MacDeploy.cmake
    M admin/cmake/toolchain.cmake
    M doc/manual/CMakeLists.txt
    M doc/manual/StageAssistant.cmake

  Log Message:
  -----------
  add: working qt6 build and install


  Commit: 5ee4575063fb99b0b70eb335bc0d88e3a903b857
      https://github.com/ehb54/ultrascan3/commit/5ee4575063fb99b0b70eb335bc0d88e3a903b857
  Author: Saeed <github.com/samo38>
  Date:   2026-03-03 (Tue, 03 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: update GUI and DataProfile


  Commit: d864a615e96c4dd2c66a738120c35c6eb556d647
      https://github.com/ehb54/ultrascan3/commit/d864a615e96c4dd2c66a738120c35c6eb556d647
  Author: Saeed <github.com/samo38>
  Date:   2026-03-03 (Tue, 03 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: use minmax


  Commit: 644141ae003ec988b86eb7b01c1e21cf208b0dac
      https://github.com/ehb54/ultrascan3/commit/644141ae003ec988b86eb7b01c1e21cf208b0dac
  Author: Saeed <github.com/samo38>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M gui/us_spectrodata.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_748


  Commit: 04583d8a1b0bcf01875f31b93a12343610284126
      https://github.com/ehb54/ultrascan3/commit/04583d8a1b0bcf01875f31b93a12343610284126
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    A admin/cmake/packaging/windows/WinDeploy.cmake
    A admin/cmake/packaging/windows/WinPkg.cmake

  Log Message:
  -----------
  add: windows installer


  Commit: 20b958cec1d253988daedd88a2fec65efd28448d
      https://github.com/ehb54/ultrascan3/commit/20b958cec1d253988daedd88a2fec65efd28448d
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  add: pkg command to build.ps1


  Commit: 2698e05dd320a374785cab43ed05a52db3c5c3a7
      https://github.com/ehb54/ultrascan3/commit/2698e05dd320a374785cab43ed05a52db3c5c3a7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinPkg.cmake
    M scripts/build.ps1

  Log Message:
  -----------
  fix: missing programs in installer package


  Commit: 499648d1ea27751d008981e0d9f1447cfbef7072
      https://github.com/ehb54/ultrascan3/commit/499648d1ea27751d008981e0d9f1447cfbef7072
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M scripts/build.ps1

  Log Message:
  -----------
  fix: missing sphinx on windows build


  Commit: 2fcc6637f35ea3ab3c8e1450a06b60932d033f1b
      https://github.com/ehb54/ultrascan3/commit/2fcc6637f35ea3ab3c8e1450a06b60932d033f1b
  Author: Saeed <samo38:github>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: update


  Commit: 41a6910c567f5d60a14f6a802af0a1134eef03c4
      https://github.com/ehb54/ultrascan3/commit/41a6910c567f5d60a14f6a802af0a1134eef03c4
  Author: Saeed <samo38:github>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  add argsort and sort functions


  Commit: bc8f22c93dcad653e16c52717a9386d9a99c67c9
      https://github.com/ehb54/ultrascan3/commit/bc8f22c93dcad653e16c52717a9386d9a99c67c9
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Refactor password re-encryption logic


  Commit: 93b2e5a2535f0de5b6fe2b4384a60d509571f6d4
      https://github.com/ehb54/ultrascan3/commit/93b2e5a2535f0de5b6fe2b4384a60d509571f6d4
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Check for empty cipherHex and optimize database loop

Added a check for empty cipherHex before decryption and modified the database loop to use a reference.


  Commit: 6a9245189a1804e4557df78035f6f4401a5883ea
      https://github.com/ehb54/ultrascan3/commit/6a9245189a1804e4557df78035f6f4401a5883ea
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M doc/manual/Makefile
    M doc/manual/source/2dsa/2dsa_adv.rst
    M doc/manual/source/2dsa/2dsa_analys.rst
    M doc/manual/source/2dsa/2dsa_main.rst
    M doc/manual/source/2dsa/index.rst
    M doc/manual/source/3d_plot.rst
    R doc/manual/source/_static/custom.css
    R doc/manual/source/_static/images/2dsa_3dplot.png
    R doc/manual/source/_static/images/2dsa_advan.png
    R doc/manual/source/_static/images/2dsa_analvv.png
    R doc/manual/source/_static/images/2dsa_analys.png
    R doc/manual/source/_static/images/2dsa_main-c.png
    R doc/manual/source/_static/images/2dsa_main-o.png
    R doc/manual/source/_static/images/2dsa_resplot.png
    R doc/manual/source/_static/images/D20W_bar.png
    R doc/manual/source/_static/images/MW-bar.png
    R doc/manual/source/_static/images/RINplot.png
    R doc/manual/source/_static/images/TINplot.png
    R doc/manual/source/_static/images/UltraScan-logo.png
    R doc/manual/source/_static/images/add_RIN-TIN.png
    R doc/manual/source/_static/images/add_RIN.png
    R doc/manual/source/_static/images/add_TIN.png
    R doc/manual/source/_static/images/advanced_config.png
    R doc/manual/source/_static/images/analyte_details.png
    R doc/manual/source/_static/images/analyte_edit.png
    R doc/manual/source/_static/images/analyte_edit_spec.png
    R doc/manual/source/_static/images/analyte_new_sequence.png
    R doc/manual/source/_static/images/analyte_newc.png
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    R doc/manual/source/_static/images/analyte_settings.png
    R doc/manual/source/_static/images/analyte_spec-gui.png
    R doc/manual/source/_static/images/analyte_specmenu.png
    R doc/manual/source/_static/images/analyte_spectrum.png
    R doc/manual/source/_static/images/analytes.png
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    R doc/manual/source/_static/images/astfem_sim.png
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    A doc/manual/source/images/pcsa.png
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    A doc/manual/source/images/rmsd_query-c.png
    A doc/manual/source/images/rmsd_query-o.png
    A doc/manual/source/images/rotor-add.png
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    A doc/manual/source/images/rotor.png
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    A doc/manual/source/images/rotorstretch_report.png
    A doc/manual/source/images/run_details.png
    A doc/manual/source/images/s20W_bar.png
    A doc/manual/source/images/sassoc.png
    A doc/manual/source/images/save_colormap.png
    A doc/manual/source/images/second_moment.png
    A doc/manual/source/images/select_edits.png
    A doc/manual/source/images/select_runs.png
    A doc/manual/source/images/sequence.png
    A doc/manual/source/images/set-zvalue.png
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    A doc/manual/source/images/simulatedReport.png
    A doc/manual/source/images/solution_edit.png
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    A doc/manual/source/images/solution_settings.png
    A doc/manual/source/images/somo/somo_icon.png
    A doc/manual/source/images/spectrum_extinction.png
    A doc/manual/source/images/sw_spectrum.png
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    A doc/manual/source/images/timestate-0.png
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    A doc/manual/source/images/ultra.xpm
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    A doc/manual/source/images/upload_fit_spectrum.png
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    A doc/manual/source/images/us_edit.png
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    A doc/manual/source/images/us_modmet_report.png
    A doc/manual/source/images/us_project.png
    A doc/manual/source/images/us_project1.png
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    A doc/manual/source/images/us_solution1.png
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    A doc/manual/source/images/vhw_combine-combo.png
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    A doc/manual/source/images/vhw_combine.png
    A doc/manual/source/images/vhw_distribution.png
    A doc/manual/source/images/vhw_enh_groups.png
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    A doc/manual/source/images/xpn_viewer-saved.png
    A doc/manual/source/images/xpn_viewer.png
    A doc/manual/source/images/zvalue_eq.png
    M doc/manual/source/index.rst
    M doc/manual/source/manage_data.rst
    M doc/manual/source/model_editor.rst
    M doc/manual/source/mwl_spectra.rst
    M doc/manual/source/mwlr_viewer.rst
    M doc/manual/source/pcsa/index.rst
    M doc/manual/source/pcsa/pcsa.rst
    M doc/manual/source/pcsa/pcsa_adv.rst
    M doc/manual/source/pcsa/pcsa_analys.rst
    M doc/manual/source/pcsa/pcsa_mlines.rst
    M doc/manual/source/pcsa/pcsa_results.rst
    M doc/manual/source/pcsa/pcsa_rpscan.rst
    M doc/manual/source/predict1.rst
    M doc/manual/source/predict2.rst
    M doc/manual/source/pseudo3d.rst
    M doc/manual/source/register.rst
    M doc/manual/source/reporter.rst
    M doc/manual/source/requirements.txt
    M doc/manual/source/rmsd_query.rst
    M doc/manual/source/rotor.rst
    M doc/manual/source/rotor_calibration.rst
    M doc/manual/source/run_details.rst
    M doc/manual/source/sassoc.rst
    M doc/manual/source/second_moment.rst
    M doc/manual/source/simparams.rst
    M doc/manual/source/solutions/index.rst
    M doc/manual/source/solutions/solution_edit.rst
    M doc/manual/source/solutions/solution_new.rst
    M doc/manual/source/solutions/solution_select.rst
    M doc/manual/source/solutions/solution_settings.rst
    M doc/manual/source/temp.txt
    M doc/manual/source/time_derivative.rst
    M doc/manual/source/tmst_viewer.rst
    M doc/manual/source/us_buoyancy.rst
    M doc/manual/source/us_edit.rst
    M doc/manual/source/us_equiltime.rst
    M doc/manual/source/us_extinction.rst
    M doc/manual/source/us_fds_filemanager.rst
    M doc/manual/source/us_investigator.rst
    M doc/manual/source/us_modelmetrics.rst
    M doc/manual/source/us_project.rst
    M doc/manual/source/us_spectrum.rst
    M doc/manual/source/vhw_combine.rst
    M doc/manual/source/vhw_distrib_plot.rst
    M doc/manual/source/vhw_enhanced.rst
    M doc/manual/source/xpn_viewer.rst

  Log Message:
  -----------
  fix: change qthelp url to use manual instead of doc, use right project structure for images and update links


  Commit: dd6f8d6767fa98ae4f35d21e7e5411f7f1f1eb17
      https://github.com/ehb54/ultrascan3/commit/dd6f8d6767fa98ae4f35d21e7e5411f7f1f1eb17
  Author: Saeed <samo38:github>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  use Microsoft format, add overlap function


  Commit: b33c9b1cddd853e103542e10c4328830fc59e944
      https://github.com/ehb54/ultrascan3/commit/b33c9b1cddd853e103542e10c4328830fc59e944
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    A admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
    M admin/cmake/packaging/windows/WinDeploy.cmake
    A admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
    M doc/manual/CMakeLists.txt
    R doc/manual/StageAssistant.cmake
    M programs/us/CMakeLists.txt
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  mod: windows and macos qt assistant fix


  Commit: adb74a9f1e5a1e238c264228544137f56a4125b5
      https://github.com/ehb54/ultrascan3/commit/adb74a9f1e5a1e238c264228544137f56a4125b5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  fix: builddir set at the beginning


  Commit: cea2ea0e77baf6dbcc9097b3062ede36ca70f800
      https://github.com/ehb54/ultrascan3/commit/cea2ea0e77baf6dbcc9097b3062ede36ca70f800
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M doc/manual/CMakeLists.txt
    M scripts/build.ps1

  Log Message:
  -----------
  fix: windows path issues


  Commit: 99a443309500f6d44fde4d4ba640770dfadeec24
      https://github.com/ehb54/ultrascan3/commit/99a443309500f6d44fde4d4ba640770dfadeec24
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
    M doc/manual/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_helpdaemon/us_helpdaemon.cpp

  Log Message:
  -----------
  fix: windows missing dll


  Commit: 399ad6ee7636d4885c37adff02b723d1e6af48c9
      https://github.com/ehb54/ultrascan3/commit/399ad6ee7636d4885c37adff02b723d1e6af48c9
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    A admin/cmake/packaging/linux/LinuxDeploy.cmake
    A admin/cmake/packaging/linux/LinuxPkg.cmake
    M scripts/build.sh
    M utils/CMakeLists.txt

  Log Message:
  -----------
  add: linux cmake packaging


  Commit: c3215226c1e826bd7c620115a98fe3694cfe771e
      https://github.com/ehb54/ultrascan3/commit/c3215226c1e826bd7c620115a98fe3694cfe771e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.sh
    M utils/us_memory.cpp

  Log Message:
  -----------
  fix: cross platform page size


  Commit: 16d1f75e51f11ad87c8f18b11e0a8a2bb755ea44
      https://github.com/ehb54/ultrascan3/commit/16d1f75e51f11ad87c8f18b11e0a8a2bb755ea44
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M admin/cmake/packaging/linux/LinuxDeploy.cmake
    M scripts/build.ps1
    M scripts/build.sh
    M vcpkg.json

  Log Message:
  -----------
  fix: assistant on linux


  Commit: 5ab554ce68ae411774740695115c51b480df8c8a
      https://github.com/ehb54/ultrascan3/commit/5ab554ce68ae411774740695115c51b480df8c8a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  fix: vcpkg cache clear


  Commit: a8b6e9963d8ed447dc737af6b4e3b69c3894945f
      https://github.com/ehb54/ultrascan3/commit/a8b6e9963d8ed447dc737af6b4e3b69c3894945f
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  fix: vcpkg cache clear fix


  Commit: 19f656eb532b2218880402623455153763d66d50
      https://github.com/ehb54/ultrascan3/commit/19f656eb532b2218880402623455153763d66d50
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt

  Log Message:
  -----------
  fix: assistant now copied to bin on dev build


  Commit: 75e0dc23de6fbdd330b322115c640d973e916d02
      https://github.com/ehb54/ultrascan3/commit/75e0dc23de6fbdd330b322115c640d973e916d02
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt

  Log Message:
  -----------
  fix: assistant find update


  Commit: 57f162e692e1a548bb426454e7e768e6f68b1bc4
      https://github.com/ehb54/ultrascan3/commit/57f162e692e1a548bb426454e7e768e6f68b1bc4
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M programs/us/us.cpp

  Log Message:
  -----------
  fix: program path issue


  Commit: 4700970e14e8ef1bf44b3fe91efd8dbcd15ba544
      https://github.com/ehb54/ultrascan3/commit/4700970e14e8ef1bf44b3fe91efd8dbcd15ba544
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt

  Log Message:
  -----------
  fix: assistant not found


  Commit: 14d6c7e63b928fb3a73559fdafa9426502eda98c
      https://github.com/ehb54/ultrascan3/commit/14d6c7e63b928fb3a73559fdafa9426502eda98c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  fix: guard specific macos required tools


  Commit: 1c6be4ed0464373db7a5a1a6a780f17bc12dbcf5
      https://github.com/ehb54/ultrascan3/commit/1c6be4ed0464373db7a5a1a6a780f17bc12dbcf5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/linux/LinuxDeploy.cmake

  Log Message:
  -----------
  fix: missing library in pkg


  Commit: 216860fe02c9358e021e6a54b84aa2aa0e462a99
      https://github.com/ehb54/ultrascan3/commit/216860fe02c9358e021e6a54b84aa2aa0e462a99
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  fix: rcc error


  Commit: be038ad56e172897c3f18b8a1319fced62a708a0
      https://github.com/ehb54/ultrascan3/commit/be038ad56e172897c3f18b8a1319fced62a708a0
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M admin/cmake/packaging/linux/LinuxDeploy.cmake

  Log Message:
  -----------
  fix: update plugin directory


  Commit: 87c38bbe59db529cf02b7887c7bfe57ebc8e62da
      https://github.com/ehb54/ultrascan3/commit/87c38bbe59db529cf02b7887c7bfe57ebc8e62da
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/linux/LinuxDeploy.cmake

  Log Message:
  -----------
  add: readme


  Commit: f4323bc883bb8996c6e627bfb9b8295063ef176f
      https://github.com/ehb54/ultrascan3/commit/f4323bc883bb8996c6e627bfb9b8295063ef176f
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    M admin/cmake/GenerateVersion.cmake
    A admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcPkg.cmake
    A admin/cmake/packaging/macos/MacHpcDeploy.cmake
    A admin/cmake/packaging/macos/MacHpcPkg.cmake
    M programs/CMakeLists.txt
    M programs/us_mpi_analysis/2dsa_worker.cpp
    M programs/us_mpi_analysis/CMakeLists.txt
    M programs/us_mpi_analysis/pcsa_worker.cpp
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M scripts/build.sh

  Log Message:
  -----------
  fix: hpc build


  Commit: c515903ce23bec6067e47ed10ae663518f3de230
      https://github.com/ehb54/ultrascan3/commit/c515903ce23bec6067e47ed10ae663518f3de230
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  mod: use all cores with CI runners


  Commit: 7a8a012754d242634bca20501e1a1c94be231d6c
      https://github.com/ehb54/ultrascan3/commit/7a8a012754d242634bca20501e1a1c94be231d6c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M CMakePresets.json
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  fix: CI runners and hpc build


  Commit: 5277352caa620430b2bf8a580f9f10d43218d930
      https://github.com/ehb54/ultrascan3/commit/5277352caa620430b2bf8a580f9f10d43218d930
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  fix: not all dependencies found


  Commit: 60b1b16425fcda080aea3bfac20f1abad9e8bc32
      https://github.com/ehb54/ultrascan3/commit/60b1b16425fcda080aea3bfac20f1abad9e8bc32
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  fix: dependenies added


  Commit: 97cbb1a37275a33ef389b6fc7c2132ed4aaf52f4
      https://github.com/ehb54/ultrascan3/commit/97cbb1a37275a33ef389b6fc7c2132ed4aaf52f4
  Author: Saeed <samo38:github>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: large updates


  Commit: 15ea3878148a0987efd94cdedb07b9e3db570cfd
      https://github.com/ehb54/ultrascan3/commit/15ea3878148a0987efd94cdedb07b9e3db570cfd
  Author: Saeed <samo38:github>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  finish the fit function


  Commit: 1c6be507a58b5e30438f1565b772e544ee297d86
      https://github.com/ehb54/ultrascan3/commit/1c6be507a58b5e30438f1565b772e544ee297d86
  Author: Saeed <samo38:github>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  improve find_lambda function


  Commit: 3b29d9afdd3d29c7e33af7f0b989ccf1c642bc8c
      https://github.com/ehb54/ultrascan3/commit/3b29d9afdd3d29c7e33af7f0b989ccf1c642bc8c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    A scripts/bootstrap-deps.sh
    A scripts/bootstrap-macos.sh
    A scripts/bootstrap-windows.ps1
    A scripts/bootstrap.bat
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  fix: bootstrap deps


  Commit: 4975707ad3f001539ceeea7d716043118c23d07a
      https://github.com/ehb54/ultrascan3/commit/4975707ad3f001539ceeea7d716043118c23d07a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    A buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    M scripts/bootstrap-deps.sh

  Log Message:
  -----------
  fix: qt5 tools overlay


  Commit: e7e0613e5d7d234f835e4e9490416e0a7f5b9803
      https://github.com/ehb54/ultrascan3/commit/e7e0613e5d7d234f835e4e9490416e0a7f5b9803
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/bootstrap-deps.sh
    M scripts/bootstrap-macos.sh
    M scripts/build.sh
    A us-build

  Log Message:
  -----------
  add: bash wrapper


  Commit: b93b52b3acb64a650854a16f3983473f49becee9
      https://github.com/ehb54/ultrascan3/commit/b93b52b3acb64a650854a16f3983473f49becee9
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  mod: make profile positional for powershell


  Commit: dfec7b06f5af8e9ad31d7b4c682197a103bd5fb1
      https://github.com/ehb54/ultrascan3/commit/dfec7b06f5af8e9ad31d7b4c682197a103bd5fb1
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/bootstrap-windows.ps1
    M scripts/build.bat

  Log Message:
  -----------
  fix: convert -- pkg to - pkg for windows


  Commit: 2f98f90faa5b640815d571359919c09034a266c1
      https://github.com/ehb54/ultrascan3/commit/2f98f90faa5b640815d571359919c09034a266c1
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/bootstrap-windows.ps1

  Log Message:
  -----------
  fix: getwin


  Commit: 7249d6b2d508075f65d61b2643639c789db68d8e
      https://github.com/ehb54/ultrascan3/commit/7249d6b2d508075f65d61b2643639c789db68d8e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/bootstrap-windows.ps1

  Log Message:
  -----------
  fix: add chocolatey fallback for ci


  Commit: 12ffcd24c66797e3e2d49303bce6232cc9c13d7c
      https://github.com/ehb54/ultrascan3/commit/12ffcd24c66797e3e2d49303bce6232cc9c13d7c
  Author: Saeed <github.com/samo38>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: finilized the widget


  Commit: 21473e24e6f59d7d4edaba9f4ea29e1174a8f579
      https://github.com/ehb54/ultrascan3/commit/21473e24e6f59d7d4edaba9f4ea29e1174a8f579
  Author: Saeed <github.com/samo38>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp

  Log Message:
  -----------
  reformat some lines


  Commit: 55d03f81788bc585236ce0b642d89abc3293ad3a
      https://github.com/ehb54/ultrascan3/commit/55d03f81788bc585236ce0b642d89abc3293ad3a
  Author: Saeed <github.com/samo38>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M test/utils/test_us_time_state.cpp
    M utils/libus_utils.pro
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_748


  Commit: c3dd2ab6d66893c243fe40ba02010696a7b78d52
      https://github.com/ehb54/ultrascan3/commit/c3dd2ab6d66893c243fe40ba02010696a7b78d52
  Author: Saeed <github.com/samo38>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  reformat comments


  Commit: 74f3ba1cd3b6646dce0b4638c98b2707dff60f2e
      https://github.com/ehb54/ultrascan3/commit/74f3ba1cd3b6646dce0b4638c98b2707dff60f2e
  Author: Saeed <github.com/samo38>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum.h: removed us_math2.h


  Commit: 1dbeb030075307c5652d506be95a2186a0c22724
      https://github.com/ehb54/ultrascan3/commit/1dbeb030075307c5652d506be95a2186a0c22724
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h

  Log Message:
  -----------
  Refactor `US_Plot`: enhance double-click interactions, add zoom configuration, and improve curve/axis management with event filter.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 72c834e6d8fa6d6cd9d3b1d1eb90cc7410670c01
      https://github.com/ehb54/ultrascan3/commit/72c834e6d8fa6d6cd9d3b1d1eb90cc7410670c01
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  Add "Click Exclusion Mode" in `US_Edit` with hover tooltips and enhanced scan selection functionality.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: ced5c0cf9086f5a21a308bcb214f061a75e89aab
      https://github.com/ehb54/ultrascan3/commit/ced5c0cf9086f5a21a308bcb214f061a75e89aab
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  Add null pointer check for `plot->getZoomer()` in `US_Edit` to prevent potential crashes.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: b5607cb3d6296c0e48283cc6dd1a804c051dd8d9
      https://github.com/ehb54/ultrascan3/commit/b5607cb3d6296c0e48283cc6dd1a804c051dd8d9
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  Remove redundant state machine changes in "Click Exclusion Mode" toggle of `US_Edit`.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: d548b54d3bbac75ffbf270b99643e5cf26257968
      https://github.com/ehb54/ultrascan3/commit/d548b54d3bbac75ffbf270b99643e5cf26257968
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.h

  Log Message:
  -----------
  Initialize members in `CurveDistance` struct with default values to improve stability and prevent undefined behavior.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: f3e23f8189d66b9641b37fb2c54b38119d2ef2ec
      https://github.com/ehb54/ultrascan3/commit/f3e23f8189d66b9641b37fb2c54b38119d2ef2ec
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp

  Log Message:
  -----------
  Refactor `US_Plot`: add new double-click connections, refactor axis configuration, and enhance zoomer signal handling.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: d73cc2971816653d17d72f1785291c00b96b0c8b
      https://github.com/ehb54/ultrascan3/commit/d73cc2971816653d17d72f1785291c00b96b0c8b
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp

  Log Message:
  -----------
  Update `US_Plot::createZoomer` to adjust `US_Zoomer` constructor arguments for axis configuration.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 45140eeddd64e45d6b5c87061f79c9aefc3ce25e
      https://github.com/ehb54/ultrascan3/commit/45140eeddd64e45d6b5c87061f79c9aefc3ce25e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    M programs/us/revision.sh
    M scripts/build.ps1

  Log Message:
  -----------
  fix: windows CI vcpkg cache usage


  Commit: 1ec6ec52d283b6c710abe095ebcad82139a64ae3
      https://github.com/ehb54/ultrascan3/commit/1ec6ec52d283b6c710abe095ebcad82139a64ae3
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M CMakePresets.json
    M scripts/build.sh

  Log Message:
  -----------
  add: macos intel build


  Commit: 39ad33c5c781b0f007822456803df7d591795fe7
      https://github.com/ehb54/ultrascan3/commit/39ad33c5c781b0f007822456803df7d591795fe7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  fix: vcpkg CI handling


  Commit: 7fad3a4dfaa187ad4eb94554cedbe3ec6cf56773
      https://github.com/ehb54/ultrascan3/commit/7fad3a4dfaa187ad4eb94554cedbe3ec6cf56773
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_mpi_analysis/revision.sh

  Log Message:
  -----------
  fix: change revision to git_revision to be consistent with other programs


  Commit: b4417a6bfd0cfcc840668d21e88718e957734e47
      https://github.com/ehb54/ultrascan3/commit/b4417a6bfd0cfcc840668d21e88718e957734e47
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M test/utils/test_us_time_state.cpp
    M utils/libus_utils.pro
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: f0c8ede548bfb3a6f2380059dd1aacf09c6a7883
      https://github.com/ehb54/ultrascan3/commit/f0c8ede548bfb3a6f2380059dd1aacf09c6a7883
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/bootstrap-macos.sh

  Log Message:
  -----------
  fix: add missing dependencies


  Commit: 09eeb4bec49931c943f732f024f1166b882c3e3a
      https://github.com/ehb54/ultrascan3/commit/09eeb4bec49931c943f732f024f1166b882c3e3a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M test/utils/test_us_time_state.cpp
    M utils/libus_utils.pro
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2


  Commit: 51ba58286eaaa41af877ff9330d19560633e1c16
      https://github.com/ehb54/ultrascan3/commit/51ba58286eaaa41af877ff9330d19560633e1c16
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/bootstrap-macos.sh

  Log Message:
  -----------
  fix: add missing dependencies


  Commit: 21a5f4a7ad52a67040b9426ed30a082038813498
      https://github.com/ehb54/ultrascan3/commit/21a5f4a7ad52a67040b9426ed30a082038813498
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: reduce linux disk space usage


  Commit: 12b7e30a17e5c86f8e9d4960f7e8da86d67b3b4f
      https://github.com/ehb54/ultrascan3/commit/12b7e30a17e5c86f8e9d4960f7e8da86d67b3b4f
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: removed vcpkg folder creation


  Commit: ece15a944fb55077213717e00f084056004367a7
      https://github.com/ehb54/ultrascan3/commit/ece15a944fb55077213717e00f084056004367a7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinDeploy.cmake

  Log Message:
  -----------
  mod: change qt warnings an error to force build to stop


  Commit: 466789a804273570c11c7cb44bf28924caa363df
      https://github.com/ehb54/ultrascan3/commit/466789a804273570c11c7cb44bf28924caa363df
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: 80474c759ff865d72c8c6043ba64d38bf98e1e15
      https://github.com/ehb54/ultrascan3/commit/80474c759ff865d72c8c6043ba64d38bf98e1e15
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: reduce to 2 cores for ubuntu


  Commit: c4af75ba6a8e299d819034f87528f9d6997e469f
      https://github.com/ehb54/ultrascan3/commit/c4af75ba6a8e299d819034f87528f9d6997e469f
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 0f81d3f0d1fb567b1e570ed90147a17f49e57c1f
      https://github.com/ehb54/ultrascan3/commit/0f81d3f0d1fb567b1e570ed90147a17f49e57c1f
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    M admin/cmake/packaging/windows/WinDeploy.cmake
    R scripts/bootstrap-deps.sh
    A scripts/bootstrap-linux.sh
    M scripts/bootstrap-macos.sh
    M scripts/build.sh
    M utils/CMakeLists.txt
    M vcpkg.json

  Log Message:
  -----------
  mod: move checks to bootstrap


  Commit: 4ff50388194860753c3e8bc4d697e944ce0f1641
      https://github.com/ehb54/ultrascan3/commit/4ff50388194860753c3e8bc4d697e944ce0f1641
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2


  Commit: 73d3d9961c360d61b70b25d54f762c7f7435325e
      https://github.com/ehb54/ultrascan3/commit/73d3d9961c360d61b70b25d54f762c7f7435325e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: a54f8e2bc39c26f3e2f95dae43da15eb743e4d25
      https://github.com/ehb54/ultrascan3/commit/a54f8e2bc39c26f3e2f95dae43da15eb743e4d25
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: 82349a16124679984a45c562feb3f2583dbdb531
      https://github.com/ehb54/ultrascan3/commit/82349a16124679984a45c562feb3f2583dbdb531
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: add platform safe check


  Commit: 844f0378f9d93d9976788b58bd853ff5baafd865
      https://github.com/ehb54/ultrascan3/commit/844f0378f9d93d9976788b58bd853ff5baafd865
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: ef226636cf28fac5f0b62c8cc7535c518336f7cd
      https://github.com/ehb54/ultrascan3/commit/ef226636cf28fac5f0b62c8cc7535c518336f7cd
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [1]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: 008ab8725529f70ff36e4845202c893ddb0e4213
      https://github.com/ehb54/ultrascan3/commit/008ab8725529f70ff36e4845202c893ddb0e4213
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [2]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: cee06353e7b931a3f580d1bffbeb9f2326d63532
      https://github.com/ehb54/ultrascan3/commit/cee06353e7b931a3f580d1bffbeb9f2326d63532
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [3]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: 5c16c03541cbbc99e4d1d5e6304244b7c5cd261d
      https://github.com/ehb54/ultrascan3/commit/5c16c03541cbbc99e4d1d5e6304244b7c5cd261d
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: ffaae2039c0f2f0337ba9cde3e4667ade9f04c5c
      https://github.com/ehb54/ultrascan3/commit/ffaae2039c0f2f0337ba9cde3e4667ade9f04c5c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: 5d9bc472d7f67b7cc2de87cfa943d8db9b3bc1c5
      https://github.com/ehb54/ultrascan3/commit/5d9bc472d7f67b7cc2de87cfa943d8db9b3bc1c5
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [4]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: f403e0ca772e609f1f064e09815e424e676e96ba
      https://github.com/ehb54/ultrascan3/commit/f403e0ca772e609f1f064e09815e424e676e96ba
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Fix methodChanged to suppress signal and reset checkboxes


  Commit: 4c73a0c1ae974bfad85180a15588c4203f772bae
      https://github.com/ehb54/ultrascan3/commit/4c73a0c1ae974bfad85180a15588c4203f772bae
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Fix typo in comment and streamline methodChanged


  Commit: 648e2c616df93b8cb3f16672c3315e44e99a1cdd
      https://github.com/ehb54/ultrascan3/commit/648e2c616df93b8cb3f16672c3315e44e99a1cdd
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_ddist_combine_all_checkbox


  Commit: 524fb756825b453194c34611c2ce7624e62f7f53
      https://github.com/ehb54/ultrascan3/commit/524fb756825b453194c34611c2ce7624e62f7f53
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: 45a5699260fb89e53971aee6bbf0b5f13d1b40fa
      https://github.com/ehb54/ultrascan3/commit/45a5699260fb89e53971aee6bbf0b5f13d1b40fa
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: 8a2d982f8e8906a85bfe363487622d59a1ff361e
      https://github.com/ehb54/ultrascan3/commit/8a2d982f8e8906a85bfe363487622d59a1ff361e
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 6d361b64fc8f314fe8399f028d2c79ef9d0e417b
      https://github.com/ehb54/ultrascan3/commit/6d361b64fc8f314fe8399f028d2c79ef9d0e417b
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: clean after build set


  Commit: 5b81b9c41fc973670663047afba591d6edaa898c
      https://github.com/ehb54/ultrascan3/commit/5b81b9c41fc973670663047afba591d6edaa898c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinDeploy.cmake

  Log Message:
  -----------
  fix: packaging


  Commit: 07c6d8042bd25e59ca20ca5bd16ed3b6ff8b321c
      https://github.com/ehb54/ultrascan3/commit/07c6d8042bd25e59ca20ca5bd16ed3b6ff8b321c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge pull request #385 from ehb54/lukas/masterpassword_change

Refactor password re-encryption logic


  Commit: ed3ecfca235f46d9da27159afb01288bbcb42cd4
      https://github.com/ehb54/ultrascan3/commit/ed3ecfca235f46d9da27159afb01288bbcb42cd4
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_ddist_combine_all_checkbox


  Commit: 3e5bea2d6f8973b1443f2db3438bbbcfe128378f
      https://github.com/ehb54/ultrascan3/commit/3e5bea2d6f8973b1443f2db3438bbbcfe128378f
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: 3afad49842a3c53daabf741428b683cb8e86837c
      https://github.com/ehb54/ultrascan3/commit/3afad49842a3c53daabf741428b683cb8e86837c
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: afdf12344c5555d4130fa310bf352f2c27bbdadc
      https://github.com/ehb54/ultrascan3/commit/afdf12344c5555d4130fa310bf352f2c27bbdadc
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    A buildsys/vcpkg/overlay-ports/qttools.disable/devendor-litehtml.patch
    A buildsys/vcpkg/overlay-ports/qttools.disable/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools.disable/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qttools.disable/windeployqt.debug.bat
    R buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
    R buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
    R buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
    R buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat

  Log Message:
  -----------
  test remove qttools overlay


  Commit: 691c2112f822e5f82f6f153dbb8d568663367a2c
      https://github.com/ehb54/ultrascan3/commit/691c2112f822e5f82f6f153dbb8d568663367a2c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2


  Commit: 447c06a32ef5ade7850e1391500673c408a9c5e4
      https://github.com/ehb54/ultrascan3/commit/447c06a32ef5ade7850e1391500673c408a9c5e4
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h

  Log Message:
  -----------
  Refactor `US_Zoomer` and `US_DoubleClickEventFilter`: enhance zoom base initialization, update rubber band/tracker pen settings, and improve double-click handling for axes and curves.


  Commit: a73d1f0d1b712c4345cbd63219466ef87ccabfdb
      https://github.com/ehb54/ultrascan3/commit/a73d1f0d1b712c4345cbd63219466ef87ccabfdb
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [5]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: 28dafe4f6fe91d2a19d25a13dca2a9700c8524c1
      https://github.com/ehb54/ultrascan3/commit/28dafe4f6fe91d2a19d25a13dca2a9700c8524c1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  [6]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: 88e5262aa244a552236f70eb1b00274e245d2f90
      https://github.com/ehb54/ultrascan3/commit/88e5262aa244a552236f70eb1b00274e245d2f90
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [6a]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...ush


  Commit: 5e19ef3b84e9f0542544c16ad99f1909133b6197
      https://github.com/ehb54/ultrascan3/commit/5e19ef3b84e9f0542544c16ad99f1909133b6197
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [6b]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...ush


  Commit: cfd2bf22ab1f023d0f1bf0c3677f13218d99b4e3
      https://github.com/ehb54/ultrascan3/commit/cfd2bf22ab1f023d0f1bf0c3677f13218d99b4e3
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_config/us_admin.cpp
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge pull request #393 from ehb54/main

Merge main into alexey-dev-issue785


  Commit: 5304d85db5ed89082fe2cf86d0fd9f3f3fbd65c3
      https://github.com/ehb54/ultrascan3/commit/5304d85db5ed89082fe2cf86d0fd9f3f3fbd65c3
  Author: Saeed <github.com/samo38>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M gui/us_plot3d.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_config/us_admin.cpp
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  merge upstream/main , resolved conflicts


  Commit: 5fbfc3b610b9edaa535c2cdde484daba5a1f6d23
      https://github.com/ehb54/ultrascan3/commit/5fbfc3b610b9edaa535c2cdde484daba5a1f6d23
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinDeploy.cmake
    A buildsys/vcpkg/overlay-ports/qt5-tools/fix-pkgconfig-qt5uiplugin-not-found.patch
    A buildsys/vcpkg/overlay-ports/qt5-tools/fix-spawnvp-argv.patch
    A buildsys/vcpkg/overlay-ports/qt5-tools/libclang.patch
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    M buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    M scripts/bootstrap-windows.ps1
    M scripts/build.ps1

  Log Message:
  -----------
  fix: restore patch for qt5-tools


  Commit: ee9314b8a10555d579148933ce5fb59dc77f25a5
      https://github.com/ehb54/ultrascan3/commit/ee9314b8a10555d579148933ce5fb59dc77f25a5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinDeploy.cmake
    M scripts/bootstrap-windows.ps1

  Log Message:
  -----------
  fix: nasm check and add supporting dlls to installation


  Commit: f9860bd8d1ac6f5c5c4a4b0dd90e3cb7f09bd131
      https://github.com/ehb54/ultrascan3/commit/f9860bd8d1ac6f5c5c4a4b0dd90e3cb7f09bd131
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M scripts/build.ps1
    M vcpkg.json

  Log Message:
  -----------
  mod: check path length is too long on qt 5


  Commit: 4365eb02a1c29a38a42fe848da39deab69e67715
      https://github.com/ehb54/ultrascan3/commit/4365eb02a1c29a38a42fe848da39deab69e67715
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    R buildsys/vcpkg/overlay-ports/qttools.disable/devendor-litehtml.patch
    R buildsys/vcpkg/overlay-ports/qttools.disable/portfile.cmake
    R buildsys/vcpkg/overlay-ports/qttools.disable/vcpkg.json
    R buildsys/vcpkg/overlay-ports/qttools.disable/windeployqt.debug.bat

  Log Message:
  -----------
  del: remove unused overlay


  Commit: c9f9553d1be9cca2abdbef64d64daa2688c9b977
      https://github.com/ehb54/ultrascan3/commit/c9f9553d1be9cca2abdbef64d64daa2688c9b977
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Merge pull request #390 from ehb54/lukas/us_ddist_combine_all_checkbox

Change behavior of all button in combine discrete distributions


  Commit: 50ee53da3e470361bd6a9fa94454856cc21660a1
      https://github.com/ehb54/ultrascan3/commit/50ee53da3e470361bd6a9fa94454856cc21660a1
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: c6c251770d12273ef8519ef12212ecaf90df9c8a
      https://github.com/ehb54/ultrascan3/commit/c6c251770d12273ef8519ef12212ecaf90df9c8a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  Merge pull request #388 from ehb54/lukas/us_edit_scan_exclude_click

Refactor US_Plot interactions and enhance US_Edit functionality


  Commit: efe1a2ba8b277a19ae50d1262c14239f9f9dac81
      https://github.com/ehb54/ultrascan3/commit/efe1a2ba8b277a19ae50d1262c14239f9f9dac81
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M scripts/bootstrap-linux.sh

  Log Message:
  -----------
  add: missing linux packages libsm-dev libice-dev


  Commit: 84f1faaa0819a233d3023bd3ae0d75d2ccaf6430
      https://github.com/ehb54/ultrascan3/commit/84f1faaa0819a233d3023bd3ae0d75d2ccaf6430
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    A buildsys/vcpkg/overlay-ports/mpg123/fix-arm64-no-fpu-neon64.patch
    A buildsys/vcpkg/overlay-ports/mpg123/have-fpu.diff
    A buildsys/vcpkg/overlay-ports/mpg123/pkgconfig.diff
    A buildsys/vcpkg/overlay-ports/mpg123/portfile.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/vcpkg.json

  Log Message:
  -----------
  add: port overlay for linux arm fix


  Commit: aae4ac3a14f0a1c0ce391cedb1844ac845045869
      https://github.com/ehb54/ultrascan3/commit/aae4ac3a14f0a1c0ce391cedb1844ac845045869
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Change encryption finalization to decryption


  Commit: 9454cb777d85cb65835ea5eb51fc05bc18d58e78
      https://github.com/ehb54/ultrascan3/commit/9454cb777d85cb65835ea5eb51fc05bc18d58e78
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp

  Log Message:
  -----------
  Implement EncryptDecryptTest for US_Crypto

Add unit test for encryption and decryption consistency


  Commit: 2c028de85502d48e60a380c61b93dc7a7e2f7727
      https://github.com/ehb54/ultrascan3/commit/2c028de85502d48e60a380c61b93dc7a7e2f7727
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp

  Log Message:
  -----------
  Add unit test for encryption with different passwords


  Commit: ac1ca1f8183d056ed7e98541ac5ac52d725b33f8
      https://github.com/ehb54/ultrascan3/commit/ac1ca1f8183d056ed7e98541ac5ac52d725b33f8
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h

  Log Message:
  -----------
  GMP-ABDE: Ranges & Upload check for ext. profiles -- while situations when extinction profiles for one or more analytes do not cover all wvls in Ranges are caught, the message is misleading and does not provide a hint for inability to proceed; capture exact message at the stage of living 7. Ranges panel & pass to Upload tab before enabling run submission...


  Commit: 8ba4b05b7f14586d7e527145ba6c464fd3dc3e4d
      https://github.com/ehb54/ultrascan3/commit/8ba4b05b7f14586d7e527145ba6c464fd3dc3e4d
  Author: Saeed <github.com/samo38>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  add wavelength limit picker, add checkbox for db loadings


  Commit: efd337809634d3a364046f3a040862ce1b2a81f4
      https://github.com/ehb54/ultrascan3/commit/efd337809634d3a364046f3a040862ce1b2a81f4
  Author: Saeed <github.com/samo38>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_748


  Commit: b94ce34c55dd06ddc8ccfbb1239c262fe1c9cd52
      https://github.com/ehb54/ultrascan3/commit/b94ce34c55dd06ddc8ccfbb1239c262fe1c9cd52
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge pull request #395 from ehb54/lukas/us_crypto_decrypt_fix

Change encryption finalization to decryption


  Commit: d6c8bb86eb4e77d526599971c15a35328a4927d8
      https://github.com/ehb54/ultrascan3/commit/d6c8bb86eb4e77d526599971c15a35328a4927d8
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue791


  Commit: e163509a00c5876ac83d78f14c8a969dae251b75
      https://github.com/ehb54/ultrascan3/commit/e163509a00c5876ac83d78f14c8a969dae251b75
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue785


  Commit: 501adedca88f7d331c3a70d62c04cc4992f86979
      https://github.com/ehb54/ultrascan3/commit/501adedca88f7d331c3a70d62c04cc4992f86979
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/macos/MacDeploy.cmake
    M admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
    A admin/cmake/packaging/macos/StageAssistantDev.cmake
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
    A buildsys/vcpkg/overlay-ports/qttools/port.data.cmake
    A buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat
    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
    M programs/us/CMakeLists.txt
    M scripts/build.sh

  Log Message:
  -----------
  add: overlay port for qttools


  Commit: e1e93704ad79bf8d43c6c4eba74a4c90b1dc1fdf
      https://github.com/ehb54/ultrascan3/commit/e1e93704ad79bf8d43c6c4eba74a4c90b1dc1fdf
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: ce7a1d14ace3b2d645b17aeab7be4f3fb881ff7b
      https://github.com/ehb54/ultrascan3/commit/ce7a1d14ace3b2d645b17aeab7be4f3fb881ff7b
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  Merge pull request #394 from ehb54/alexey-dev-issue785

Alexey dev issue785: Show sigle-channel-replica group info in the Average over Replicas Section of the Report


  Commit: e6579802fd032cde1c91863e8af0b2885d936062
      https://github.com/ehb54/ultrascan3/commit/e6579802fd032cde1c91863e8af0b2885d936062
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue791


  Commit: d0eb3d3a8f27a33f4dc6b857f1a2ddcb6c52af5d
      https://github.com/ehb54/ultrascan3/commit/d0eb3d3a8f27a33f4dc6b857f1a2ddcb6c52af5d
  Author: Saeed <github.com/samo38>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_748


  Commit: 563c55a8a0ccb209a43dc363ec87842b0f4d6489
      https://github.com/ehb54/ultrascan3/commit/563c55a8a0ccb209a43dc363ec87842b0f4d6489
  Author: Saeed Mortezazadeh <49119048+samo38 at users.noreply.github.com>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge pull request #387 from samo38/ticket_748

Ticket 748: Enhance Spectrum Decomposition GUI and functionality


  Commit: 3fef021d4fad55bc1bb07521af0bff3e7ac12095
      https://github.com/ehb54/ultrascan3/commit/3fef021d4fad55bc1bb07521af0bff3e7ac12095
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue791


  Commit: cb192562f44149651f3157090d395a05f79da39e
      https://github.com/ehb54/ultrascan3/commit/cb192562f44149651f3157090d395a05f79da39e
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h

  Log Message:
  -----------
  Merge pull request #396 from ehb54/alexey-dev-issue791

GMP-ABDE: Ranges & Upload check for ext. profiles -- while situations?


  Commit: 81695e7ad3f97f7cd46fe42d8148a8911fc3fc43
      https://github.com/ehb54/ultrascan3/commit/81695e7ad3f97f7cd46fe42d8148a8911fc3fc43
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: bed8960f5d491db022be512a82491fc248abcbf9
      https://github.com/ehb54/ultrascan3/commit/bed8960f5d491db022be512a82491fc248abcbf9
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M doc/manual/CMakeLists.txt
    M doc/manual/README.md
    M doc/manual/source/conf.py
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  mod: PR comments addressed


  Commit: 5205cb5542bd366b63909189ac9691c6473fc071
      https://github.com/ehb54/ultrascan3/commit/5205cb5542bd366b63909189ac9691c6473fc071
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2


  Commit: 76e772666ba74f76a6d525444b9c0cd8f9d01e76
      https://github.com/ehb54/ultrascan3/commit/76e772666ba74f76a6d525444b9c0cd8f9d01e76
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M doc/manual/CMakeLists.txt

  Log Message:
  -----------
  fix: skip subdirectory doc/manual if hpc or documentation off


  Commit: 05b438d52cffda88429e278cae66fead57b193ec
      https://github.com/ehb54/ultrascan3/commit/05b438d52cffda88429e278cae66fead57b193ec
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M CMakePresets.json
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    R doc/manual/source/conf.py-orig.081225
    M gui/CMakeLists.txt
    M programs/us_helpdaemon/us_helpdaemon.cpp

  Log Message:
  -----------
  fix: Reformat CMakePresets.json to multi-line style; add US3_NO_DB=ON to all HPC
     presets; fix GLU elseif(UNIX) branch; drop dead Windows assistant path check.


  Commit: 21882cd1fd05a489de72b721e1e4bebaa8fb9ac5
      https://github.com/ehb54/ultrascan3/commit/21882cd1fd05a489de72b721e1e4bebaa8fb9ac5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M doc/manual/CMakeLists.txt
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  fix: pr comments


  Commit: 39a94736afc6e6b1450549833138c494fc1ff36b
      https://github.com/ehb54/ultrascan3/commit/39a94736afc6e6b1450549833138c494fc1ff36b
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M doc/manual/Makefile

  Log Message:
  -----------
  fix: make all moved to top


  Commit: 55ad77b5ea4726efff74c2e3da2b763af7b12070
      https://github.com/ehb54/ultrascan3/commit/55ad77b5ea4726efff74c2e3da2b763af7b12070
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    M doc/manual/CMakeLists.txt

  Log Message:
  -----------
  fix: presets


  Commit: 8aeda75b69a9c2d9df2af035ea7265bb93bdacef
      https://github.com/ehb54/ultrascan3/commit/8aeda75b69a9c2d9df2af035ea7265bb93bdacef
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-21 (Sat, 21 Mar 2026)

  Changed paths:
    A admin/cmake/README.md
    A admin/cmake/packaging/README.md
    A pkg/macos/README.md

  Log Message:
  -----------
  mod: readmes


  Commit: 81c3a3a5d2a743645b19098027b58ecdc429d634
      https://github.com/ehb54/ultrascan3/commit/81c3a3a5d2a743645b19098027b58ecdc429d634
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-22 (Sun, 22 Mar 2026)

  Changed paths:
    R doc/manual/source/2dsa/2dsa_adv.rst
    R doc/manual/source/2dsa/2dsa_analys.rst
    R doc/manual/source/2dsa/2dsa_main.rst
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  Log Message:
  -----------
  mod: removed documentation.


  Commit: f448548065ff12b1c240270de9d4827cf5f51a79
      https://github.com/ehb54/ultrascan3/commit/f448548065ff12b1c240270de9d4827cf5f51a79
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-24 (Tue, 24 Mar 2026)

  Changed paths:
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    M programs/us/revision.sh
    M programs/us/us.cpp
    M programs/us_helpdaemon/us_helpdaemon.cpp
    M programs/us_mpi_analysis/2dsa_worker.cpp
    M programs/us_mpi_analysis/CMakeLists.txt
    M programs/us_mpi_analysis/pcsa_worker.cpp
    M programs/us_mpi_analysis/revision.sh
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M qwtplot3d/CMakeLists.txt
    A scripts/bootstrap-linux.sh
    A scripts/bootstrap-macos.sh
    A scripts/bootstrap-windows.ps1
    A scripts/bootstrap.bat
    M scripts/build.bat
    M scripts/build.ps1
    M scripts/build.sh
    A us-build
    M utils/CMakeLists.txt
    M utils/us_memory.cpp
    M vcpkg.json

  Log Message:
  -----------
  Merge pull request #374 from ehb54/527-enhancement-sphinx-migration-2

Integrate Sphinx Document Generation


  Commit: 0a9196aea05b0dc1c6f984302c09ffefa32db302
      https://github.com/ehb54/ultrascan3/commit/0a9196aea05b0dc1c6f984302c09ffefa32db302
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-24 (Tue, 24 Mar 2026)

  Changed paths:
    M .github/workflows/bump-version.yml
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    M LICENSE.txt
    M README.manual
    M admin/cmake/GenerateVersion.cmake
    A admin/cmake/README.md
    A admin/cmake/packaging/README.md
    A admin/cmake/packaging/linux/LinuxDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcPkg.cmake
    A admin/cmake/packaging/linux/LinuxPkg.cmake
    A admin/cmake/packaging/macos/MacDeploy.cmake
    A admin/cmake/packaging/macos/MacHpcDeploy.cmake
    A admin/cmake/packaging/macos/MacHpcPkg.cmake
    A admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
    A admin/cmake/packaging/macos/MacOsPkg.cmake
    A admin/cmake/packaging/macos/StageAssistantDev.cmake
    A admin/cmake/packaging/windows/WinDeploy.cmake
    A admin/cmake/packaging/windows/WinPkg.cmake
    A admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
    M admin/cmake/toolchain.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/fix-arm64-no-fpu-neon64.patch
    A buildsys/vcpkg/overlay-ports/mpg123/have-fpu.diff
    A buildsys/vcpkg/overlay-ports/mpg123/pkgconfig.diff
    A buildsys/vcpkg/overlay-ports/mpg123/portfile.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/vcpkg.json
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
    A buildsys/vcpkg/overlay-ports/qttools/port.data.cmake
    A buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat
    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
    R doc/manual/2dsa/2dsa.body
    R doc/manual/2dsa/2dsa_advan.body
    R doc/manual/2dsa/2dsa_analvv.body
    R doc/manual/2dsa/2dsa_analys.body
    M doc/manual/CMakeLists.txt
    M doc/manual/Makefile
    M doc/manual/README.md
    R doc/manual/advanced_config.body
    R doc/manual/analytes.body
    R doc/manual/associations.body
    R doc/manual/astfem_sim.body
    R doc/manual/buffer_edit.body
    R doc/manual/buffer_new.body
    R doc/manual/buffer_select.body
    R doc/manual/buffer_settings.body
    R doc/manual/cfa_viewer.body
    R doc/manual/colorgradient.body
    R doc/manual/combine_models.body
    R doc/manual/components.body
    R doc/manual/config.body
    R doc/manual/config2.body
    R doc/manual/convert-experiment.body
    R doc/manual/convert-seltrip.body
    R doc/manual/convert.body
    R doc/manual/data_loader.body
    R doc/manual/database_config.body
    R doc/manual/ddist_combine.body
    R doc/manual/dens_match.body
    R doc/manual/dens_match_mparam.body
    R doc/manual/dens_match_rmvmods.body
    R doc/manual/experiment/experiment_cells.body
    R doc/manual/experiment/experiment_general.body
    R doc/manual/experiment/experiment_photomult.body
    R doc/manual/experiment/experiment_rotor.body
    R doc/manual/experiment/experiment_solutions.body
    R doc/manual/experiment/experiment_speeds.body
    R doc/manual/experiment/experiment_upload.body
    R doc/manual/export_legacy.body
    R doc/manual/fe_match/fe_match.body
    R doc/manual/fe_match/fe_match_adv.body
    R doc/manual/fe_match/fe_match_controls.body
    R doc/manual/fe_match/fe_match_lddat.body
    R doc/manual/fe_match/fe_match_simulate.body
    R doc/manual/fit_meniscus.body
    R doc/manual/footer.us3
    R doc/manual/ga_initialize.body
    R doc/manual/gmp/gmp.body
    R doc/manual/gmp/gmp_audit_trail.body
    R doc/manual/gmp/gmp_data_acquisition.body
    R doc/manual/gmp/gmp_data_acquisition_experiment.body
    R doc/manual/gmp/gmp_data_acquisition_gmp.body
    R doc/manual/gmp/gmp_protocol_development.body
    R doc/manual/gmp/gmp_report_generator.body
    R doc/manual/gmp/gmp_signature.body
    R doc/manual/grid_editor.body
    R doc/manual/header.us3
    R doc/manual/images/2dsa_3dplot.png
    R doc/manual/images/2dsa_advan.png
    R doc/manual/images/2dsa_analvv.png
    R doc/manual/images/2dsa_analys.png
    R doc/manual/images/2dsa_main-c.png
    R doc/manual/images/2dsa_main-o.png
    R doc/manual/images/2dsa_resplot.png
    R doc/manual/images/advanced_config.png
    R doc/manual/images/analyte_details.png
    R doc/manual/images/analytes.png
    R doc/manual/images/associations.png
    R doc/manual/images/astfem_sim.png
    R doc/manual/images/buffer_edit.png
    R doc/manual/images/buffer_info.png
    R doc/manual/images/buffer_new.png
    R doc/manual/images/buffer_select.png
    R doc/manual/images/buffer_settings.png
    R doc/manual/images/cfa_view-loadauc.png
    R doc/manual/images/cfa_view-loadraw.png
    R doc/manual/images/cfa_view-main.png
    R doc/manual/images/cfa_view-statsauc.png
    R doc/manual/images/cfa_view-statsraw.png
    R doc/manual/images/color-1.png
    R doc/manual/images/color-2.png
    R doc/manual/images/color-a.png
    R doc/manual/images/color-b.png
    R doc/manual/images/colorgrad.png
    R doc/manual/images/colorgrad1.png
    R doc/manual/images/combine_models-idedit.png
    R doc/manual/images/combine_models-save.png
    R doc/manual/images/combine_models.png
    R doc/manual/images/components.png
    R doc/manual/images/config.png
    R doc/manual/images/config1.png
    R doc/manual/images/config2.png
    R doc/manual/images/convert-RIdata.png
    R doc/manual/images/convert-exclude.png
    R doc/manual/images/convert-experiment.png
    R doc/manual/images/convert-mwl.png
    R doc/manual/images/convert-seltrip.png
    R doc/manual/images/convert-subset.png
    R doc/manual/images/convert-tolerance.png
    R doc/manual/images/convert.png
    R doc/manual/images/data_loader-edits.png
    R doc/manual/images/data_loader-trips.png
    R doc/manual/images/data_loader.png
    R doc/manual/images/database.png
    R doc/manual/images/ddist_combine-selrun.png
    R doc/manual/images/ddist_combine.png
    R doc/manual/images/densmatch_main.png
    R doc/manual/images/densmatch_mpars_completed.png
    R doc/manual/images/densmatch_mpars_empty.png
    R doc/manual/images/densmatch_rmvmodels.png
    R doc/manual/images/eq1-mean.png
    R doc/manual/images/eq2-skew.png
    R doc/manual/images/eq3-kurtosis.png
    R doc/manual/images/eq4-moments.png
    R doc/manual/images/eq5-variance.png
    R doc/manual/images/eq6-stddev.png
    R doc/manual/images/eq7-probsigma.png
    R doc/manual/images/eq8-confidence.png
    R doc/manual/images/experiment_cells.png
    R doc/manual/images/experiment_general.png
    R doc/manual/images/experiment_photomult.png
    R doc/manual/images/experiment_rotor.png
    R doc/manual/images/experiment_solutions.png
    R doc/manual/images/experiment_speeds.png
    R doc/manual/images/experiment_upload.png
    R doc/manual/images/export_legacy.png
    R doc/manual/images/fe_match.png
    R doc/manual/images/fe_match_3dplot.png
    R doc/manual/images/fe_match_adv.png
    R doc/manual/images/fe_match_lddat1.png
    R doc/manual/images/fe_match_lddat2.png
    R doc/manual/images/fe_match_lddat3.png
    R doc/manual/images/fe_match_lddat4.png
    R doc/manual/images/fe_match_ra.png
    R doc/manual/images/fe_match_resplot.png
    R doc/manual/images/fe_match_sim1.png
    R doc/manual/images/fe_match_sim2.png
    R doc/manual/images/fe_match_sim3_1b.png
    R doc/manual/images/fe_match_sim3_1p.png
    R doc/manual/images/fe_match_sim3_2b.png
    R doc/manual/images/fe_match_sim3_2p.png
    R doc/manual/images/fe_match_sim3_3b.png
    R doc/manual/images/fe_match_sim3_4b.png
    R doc/manual/images/fe_match_sim3_5b.png
    R doc/manual/images/fe_match_sim3_5p.png
    R doc/manual/images/fe_match_sim3_6b.png
    R doc/manual/images/fe_match_sim3_7b.png
    R doc/manual/images/fe_match_sim3_8b.png
    R doc/manual/images/fe_match_sim4.png
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    R doc/manual/images/fe_match_sim6.png
    R doc/manual/images/fe_match_sim7.png
    R doc/manual/images/fit_men-editupd.png
    R doc/manual/images/fit_men-load.png
    R doc/manual/images/fit_meniscus.png
    R doc/manual/images/ga_initialize.png
    R doc/manual/images/gmp/audit_trail/gmp_audit_trail_01.png
    R doc/manual/images/gmp/audit_trail/gmp_audit_trail_02.png
    R doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_01.png
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    R doc/manual/images/reporter-saveprof.png
    R doc/manual/images/reporter-view.png
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    R doc/manual/images/save_colormap.png
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    R doc/manual/images/select_edits.png
    R doc/manual/images/select_runs.png
    R doc/manual/images/sequence.png
    R doc/manual/images/simparams.png
    R doc/manual/images/somo/somo_icon.png
    R doc/manual/images/time_derivative.png
    R doc/manual/images/ultra.xpm
    R doc/manual/images/ultrascan3.png
    R doc/manual/images/us_buffer.png
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    R doc/manual/images/us_edit.png
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    R doc/manual/images/us_fds_filemanager-0.png
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    R doc/manual/images/usfont-1.png
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    R doc/manual/images/vhw_combine-combo.png
    R doc/manual/images/vhw_combine-envel.png
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    R doc/manual/images/vhw_distribution.png
    R doc/manual/images/vhw_enh_groups.png
    R doc/manual/images/vhw_enhanced.png
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    R doc/manual/index.body
    R doc/manual/load/load_auc.body
    R doc/manual/load/load_colormap.body
    R doc/manual/load/load_model_dis-MID.body
    R doc/manual/load/load_model_distrib.body
    R doc/manual/load/load_noise.body
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    R doc/manual/mainstyle.css
    R doc/manual/make-docs.sh
    R doc/manual/make-html.sh
    R doc/manual/make-qdocs.sh
    R doc/manual/make-wraps.sh
    R doc/manual/manage_data.body
    R doc/manual/manage_data_cmenu.body
    R doc/manual/manage_data_thelp.body
    R doc/manual/manual.qhcp
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    R doc/manual/master_pw.body
    R doc/manual/model_editor.body
    R doc/manual/mwlr_view_load.body
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    R doc/manual/mwlr_viewer.body
    R doc/manual/optima_host_config.body
    R doc/manual/pcsa.body
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    R doc/manual/predict1.body
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    R doc/manual/select_edits.body
    R doc/manual/select_runs.body
    R doc/manual/simparams.body
    R doc/manual/somo.body
    A doc/manual/source/_static/css/custom.css
    A doc/manual/source/_static/js/language_data.js
    A doc/manual/source/_static/js/sphinx_highlight.js
    A doc/manual/source/conf.py
    A doc/manual/source/index.rst
    A doc/manual/source/requirements.txt
    R doc/manual/template.img.body
    R doc/manual/tidy.conf
    R doc/manual/time_derivative.body
    R doc/manual/ultrascan3.txt
    R doc/manual/us_buffer.body
    R doc/manual/us_edit.body
    R doc/manual/us_edit_mwl.body
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    R doc/manual/vhw_combine.body
    R doc/manual/vhw_distrib_plot.body
    R doc/manual/vhw_enhanced.body
    R doc/manual/wrapped-images.lst
    M gui/CMakeLists.txt
    M gui/us_help.cpp
    M gui/us_plot.cpp
    M gui/us_plot.h
    M makeall.sh
    A pkg/macos/README.md
    A pkg/macos/component.plist
    A pkg/macos/distribution.xml.in
    A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist
    A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3
    A pkg/macos/postinstall
    A pkg/macos/preinstall
    A pkg/macos/resources/Welcome.txt.in
    A pkg/macos/resources/background.png
    A pkg/macos/ultrascan_sysctl.plist
    A pkg/macos/uninstall.sh
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us/revision.sh
    M programs/us/us.cpp
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_config/us_admin.cpp
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_helpdaemon/us_helpdaemon.cpp
    M programs/us_mpi_analysis/2dsa_worker.cpp
    M programs/us_mpi_analysis/CMakeLists.txt
    M programs/us_mpi_analysis/pcsa_worker.cpp
    M programs/us_mpi_analysis/revision.sh
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h
    M qwtplot3d/CMakeLists.txt
    A scripts/bootstrap-linux.sh
    A scripts/bootstrap-macos.sh
    A scripts/bootstrap-windows.ps1
    A scripts/bootstrap.bat
    M scripts/build.bat
    M scripts/build.ps1
    M scripts/build.sh
    M test/utils/test_us_crypto.cpp
    A us-build
    M utils/CMakeLists.txt
    M utils/us_crypto.cpp
    M utils/us_memory.cpp
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


Compare: https://github.com/ehb54/ultrascan3/compare/10e620037c83...0a9196aea05b

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From noreply at github.com  Tue Mar 24 12:38:49 2026
From: noreply at github.com (emre brookes)
Date: Tue, 24 Mar 2026 11:38:49 -0700
Subject: [us-commits] [ehb54/ultrascan3] 89b769: fix revision.sh checks
 osx/linux compat.
Message-ID: <ehb54/ultrascan3/push/refs/heads/main/f44854-a3d889@github.com>

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 89b7691a714d92e99e335e23378d225aa3b1b536
      https://github.com/ehb54/ultrascan3/commit/89b7691a714d92e99e335e23378d225aa3b1b536
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M programs/us/revision.sh

  Log Message:
  -----------
  fix revision.sh checks osx/linux compat.


  Commit: 572bb723ed591be3225aacbdbc387c93c17ca792
      https://github.com/ehb54/ultrascan3/commit/572bb723ed591be3225aacbdbc387c93c17ca792
  Author: emre brookes <ehb54 at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M gui/us_spectrodata.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


  Commit: b2c2afd33a8ed941e547021628bcb32abea1675a
      https://github.com/ehb54/ultrascan3/commit/b2c2afd33a8ed941e547021628bcb32abea1675a
  Author: emre brookes <ehb54 at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M utils/libus_utils.pro
    M utils/us_crypto.cpp
    M utils/us_crypto.h

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


  Commit: fd116b43987cda26a351438dcd70082a7c27ce17
      https://github.com/ehb54/ultrascan3/commit/fd116b43987cda26a351438dcd70082a7c27ce17
  Author: emre brookes <ehb54 at users.noreply.github.com>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


  Commit: e9f0952dea5d8bb82a866082b546997a3e457ec4
      https://github.com/ehb54/ultrascan3/commit/e9f0952dea5d8bb82a866082b546997a3e457ec4
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


  Commit: 10e620037c83dddc66d518ab28e33eb36c3e3c17
      https://github.com/ehb54/ultrascan3/commit/10e620037c83dddc66d518ab28e33eb36c3e3c17
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


  Commit: 0a9196aea05b0dc1c6f984302c09ffefa32db302
      https://github.com/ehb54/ultrascan3/commit/0a9196aea05b0dc1c6f984302c09ffefa32db302
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-24 (Tue, 24 Mar 2026)

  Changed paths:
    M .github/workflows/bump-version.yml
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    M LICENSE.txt
    M README.manual
    M admin/cmake/GenerateVersion.cmake
    A admin/cmake/README.md
    A admin/cmake/packaging/README.md
    A admin/cmake/packaging/linux/LinuxDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcPkg.cmake
    A admin/cmake/packaging/linux/LinuxPkg.cmake
    A admin/cmake/packaging/macos/MacDeploy.cmake
    A admin/cmake/packaging/macos/MacHpcDeploy.cmake
    A admin/cmake/packaging/macos/MacHpcPkg.cmake
    A admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
    A admin/cmake/packaging/macos/MacOsPkg.cmake
    A admin/cmake/packaging/macos/StageAssistantDev.cmake
    A admin/cmake/packaging/windows/WinDeploy.cmake
    A admin/cmake/packaging/windows/WinPkg.cmake
    A admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
    M admin/cmake/toolchain.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/fix-arm64-no-fpu-neon64.patch
    A buildsys/vcpkg/overlay-ports/mpg123/have-fpu.diff
    A buildsys/vcpkg/overlay-ports/mpg123/pkgconfig.diff
    A buildsys/vcpkg/overlay-ports/mpg123/portfile.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/vcpkg.json
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
    A buildsys/vcpkg/overlay-ports/qttools/port.data.cmake
    A buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat
    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
    R doc/manual/2dsa/2dsa.body
    R doc/manual/2dsa/2dsa_advan.body
    R doc/manual/2dsa/2dsa_analvv.body
    R doc/manual/2dsa/2dsa_analys.body
    M doc/manual/CMakeLists.txt
    M doc/manual/Makefile
    M doc/manual/README.md
    R doc/manual/advanced_config.body
    R doc/manual/analytes.body
    R doc/manual/associations.body
    R doc/manual/astfem_sim.body
    R doc/manual/buffer_edit.body
    R doc/manual/buffer_new.body
    R doc/manual/buffer_select.body
    R doc/manual/buffer_settings.body
    R doc/manual/cfa_viewer.body
    R doc/manual/colorgradient.body
    R doc/manual/combine_models.body
    R doc/manual/components.body
    R doc/manual/config.body
    R doc/manual/config2.body
    R doc/manual/convert-experiment.body
    R doc/manual/convert-seltrip.body
    R doc/manual/convert.body
    R doc/manual/data_loader.body
    R doc/manual/database_config.body
    R doc/manual/ddist_combine.body
    R doc/manual/dens_match.body
    R doc/manual/dens_match_mparam.body
    R doc/manual/dens_match_rmvmods.body
    R doc/manual/experiment/experiment_cells.body
    R doc/manual/experiment/experiment_general.body
    R doc/manual/experiment/experiment_photomult.body
    R doc/manual/experiment/experiment_rotor.body
    R doc/manual/experiment/experiment_solutions.body
    R doc/manual/experiment/experiment_speeds.body
    R doc/manual/experiment/experiment_upload.body
    R doc/manual/export_legacy.body
    R doc/manual/fe_match/fe_match.body
    R doc/manual/fe_match/fe_match_adv.body
    R doc/manual/fe_match/fe_match_controls.body
    R doc/manual/fe_match/fe_match_lddat.body
    R doc/manual/fe_match/fe_match_simulate.body
    R doc/manual/fit_meniscus.body
    R doc/manual/footer.us3
    R doc/manual/ga_initialize.body
    R doc/manual/gmp/gmp.body
    R doc/manual/gmp/gmp_audit_trail.body
    R doc/manual/gmp/gmp_data_acquisition.body
    R doc/manual/gmp/gmp_data_acquisition_experiment.body
    R doc/manual/gmp/gmp_data_acquisition_gmp.body
    R doc/manual/gmp/gmp_protocol_development.body
    R doc/manual/gmp/gmp_report_generator.body
    R doc/manual/gmp/gmp_signature.body
    R doc/manual/grid_editor.body
    R doc/manual/header.us3
    R doc/manual/images/2dsa_3dplot.png
    R doc/manual/images/2dsa_advan.png
    R doc/manual/images/2dsa_analvv.png
    R doc/manual/images/2dsa_analys.png
    R doc/manual/images/2dsa_main-c.png
    R doc/manual/images/2dsa_main-o.png
    R doc/manual/images/2dsa_resplot.png
    R doc/manual/images/advanced_config.png
    R doc/manual/images/analyte_details.png
    R doc/manual/images/analytes.png
    R doc/manual/images/associations.png
    R doc/manual/images/astfem_sim.png
    R doc/manual/images/buffer_edit.png
    R doc/manual/images/buffer_info.png
    R doc/manual/images/buffer_new.png
    R doc/manual/images/buffer_select.png
    R doc/manual/images/buffer_settings.png
    R doc/manual/images/cfa_view-loadauc.png
    R doc/manual/images/cfa_view-loadraw.png
    R doc/manual/images/cfa_view-main.png
    R doc/manual/images/cfa_view-statsauc.png
    R doc/manual/images/cfa_view-statsraw.png
    R doc/manual/images/color-1.png
    R doc/manual/images/color-2.png
    R doc/manual/images/color-a.png
    R doc/manual/images/color-b.png
    R doc/manual/images/colorgrad.png
    R doc/manual/images/colorgrad1.png
    R doc/manual/images/combine_models-idedit.png
    R doc/manual/images/combine_models-save.png
    R doc/manual/images/combine_models.png
    R doc/manual/images/components.png
    R doc/manual/images/config.png
    R doc/manual/images/config1.png
    R doc/manual/images/config2.png
    R doc/manual/images/convert-RIdata.png
    R doc/manual/images/convert-exclude.png
    R doc/manual/images/convert-experiment.png
    R doc/manual/images/convert-mwl.png
    R doc/manual/images/convert-seltrip.png
    R doc/manual/images/convert-subset.png
    R doc/manual/images/convert-tolerance.png
    R doc/manual/images/convert.png
    R doc/manual/images/data_loader-edits.png
    R doc/manual/images/data_loader-trips.png
    R doc/manual/images/data_loader.png
    R doc/manual/images/database.png
    R doc/manual/images/ddist_combine-selrun.png
    R doc/manual/images/ddist_combine.png
    R doc/manual/images/densmatch_main.png
    R doc/manual/images/densmatch_mpars_completed.png
    R doc/manual/images/densmatch_mpars_empty.png
    R doc/manual/images/densmatch_rmvmodels.png
    R doc/manual/images/eq1-mean.png
    R doc/manual/images/eq2-skew.png
    R doc/manual/images/eq3-kurtosis.png
    R doc/manual/images/eq4-moments.png
    R doc/manual/images/eq5-variance.png
    R doc/manual/images/eq6-stddev.png
    R doc/manual/images/eq7-probsigma.png
    R doc/manual/images/eq8-confidence.png
    R doc/manual/images/experiment_cells.png
    R doc/manual/images/experiment_general.png
    R doc/manual/images/experiment_photomult.png
    R doc/manual/images/experiment_rotor.png
    R doc/manual/images/experiment_solutions.png
    R doc/manual/images/experiment_speeds.png
    R doc/manual/images/experiment_upload.png
    R doc/manual/images/export_legacy.png
    R doc/manual/images/fe_match.png
    R doc/manual/images/fe_match_3dplot.png
    R doc/manual/images/fe_match_adv.png
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    A doc/manual/source/_static/css/custom.css
    A doc/manual/source/_static/js/language_data.js
    A doc/manual/source/_static/js/sphinx_highlight.js
    A doc/manual/source/conf.py
    A doc/manual/source/index.rst
    A doc/manual/source/requirements.txt
    R doc/manual/template.img.body
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    M gui/CMakeLists.txt
    M gui/us_help.cpp
    M gui/us_plot.cpp
    M gui/us_plot.h
    M makeall.sh
    A pkg/macos/README.md
    A pkg/macos/component.plist
    A pkg/macos/distribution.xml.in
    A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist
    A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3
    A pkg/macos/postinstall
    A pkg/macos/preinstall
    A pkg/macos/resources/Welcome.txt.in
    A pkg/macos/resources/background.png
    A pkg/macos/ultrascan_sysctl.plist
    A pkg/macos/uninstall.sh
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us/revision.sh
    M programs/us/us.cpp
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_config/us_admin.cpp
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_helpdaemon/us_helpdaemon.cpp
    M programs/us_mpi_analysis/2dsa_worker.cpp
    M programs/us_mpi_analysis/CMakeLists.txt
    M programs/us_mpi_analysis/pcsa_worker.cpp
    M programs/us_mpi_analysis/revision.sh
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h
    M qwtplot3d/CMakeLists.txt
    A scripts/bootstrap-linux.sh
    A scripts/bootstrap-macos.sh
    A scripts/bootstrap-windows.ps1
    A scripts/bootstrap.bat
    M scripts/build.bat
    M scripts/build.ps1
    M scripts/build.sh
    M test/utils/test_us_crypto.cpp
    A us-build
    M utils/CMakeLists.txt
    M utils/us_crypto.cpp
    M utils/us_memory.cpp
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


  Commit: a3d889c69f7012ff5840a86814780d3490d5ea2a
      https://github.com/ehb54/ultrascan3/commit/a3d889c69f7012ff5840a86814780d3490d5ea2a
  Author: emre brookes <ehb54 at users.noreply.github.com>
  Date:   2026-03-24 (Tue, 24 Mar 2026)

  Changed paths:
    M programs/us/revision.sh

  Log Message:
  -----------
  Merge pull request #377 from ehb54/ehb54-issue-670

fix revision.sh checks osx/linux compat.


Compare: https://github.com/ehb54/ultrascan3/compare/f448548065ff...a3d889c69f70

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From noreply at github.com  Tue Mar 24 12:38:52 2026
From: noreply at github.com (emre brookes)
Date: Tue, 24 Mar 2026 11:38:52 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/ehb54-issue-670/0a9196-000000@github.com>

  Branch: refs/heads/ehb54-issue-670
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Tue Mar 24 13:43:08 2026
From: noreply at github.com (HabGab)
Date: Tue, 24 Mar 2026 12:43:08 -0700
Subject: [us-commits] [ehb54/ultrascan3] ef6f3b: mod: icons remove border
Message-ID: <ehb54/ultrascan3/push/refs/heads/haben-Dev/779bf5-0edd93@github.com>

  Branch: refs/heads/haben-Dev
  Home:   https://github.com/ehb54/ultrascan3
  Commit: ef6f3bd3f96408decfe78facbf37acadc5834997
      https://github.com/ehb54/ultrascan3/commit/ef6f3bd3f96408decfe78facbf37acadc5834997
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2025-12-18 (Thu, 18 Dec 2025)

  Changed paths:
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png

  Log Message:
  -----------
  mod: icons remove border


  Commit: d287d24ac45d15c14c50dffde79d3abcf44e1c47
      https://github.com/ehb54/ultrascan3/commit/d287d24ac45d15c14c50dffde79d3abcf44e1c47
  Author: Saeed <github.com/samo38>
  Date:   2026-02-06 (Fri, 06 Feb 2026)

  Changed paths:
    M gui/us_spectrodata.h

  Log Message:
  -----------
  us_spectrodata: add hydrodynamic radius to S_Solute


  Commit: 1a9eda0deabbf567b25ddd721c01232463c6d549
      https://github.com/ehb54/ultrascan3/commit/1a9eda0deabbf567b25ddd721c01232463c6d549
  Author: Saeed <github.com/samo38>
  Date:   2026-02-06 (Fri, 06 Feb 2026)

  Changed paths:
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h

  Log Message:
  -----------
  us_integral: replace SolParam with S_Solute


  Commit: f422eaebafa361f357d0b27d3f56d3f4d3247f8e
      https://github.com/ehb54/ultrascan3/commit/f422eaebafa361f357d0b27d3f56d3f4d3247f8e
  Author: Saeed <github.com/samo38>
  Date:   2026-02-10 (Tue, 10 Feb 2026)

  Changed paths:
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h

  Log Message:
  -----------
  us_ga_init: add Rh


  Commit: b4b6df18011d41ed7209dca2fa4580a93512d976
      https://github.com/ehb54/ultrascan3/commit/b4b6df18011d41ed7209dca2fa4580a93512d976
  Author: Saeed <github.com/samo38>
  Date:   2026-02-11 (Wed, 11 Feb 2026)

  Changed paths:
    M programs/us_ga_init/us_solutedata.cpp

  Log Message:
  -----------
  us_ga_init/us_solutedata: add Hr to the report file


  Commit: a10c820b1808470ff1529c74ae9e8cbb6f2db80f
      https://github.com/ehb54/ultrascan3/commit/a10c820b1808470ff1529c74ae9e8cbb6f2db80f
  Author: Saeed <github.com/samo38>
  Date:   2026-02-11 (Wed, 11 Feb 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h

  Log Message:
  -----------
  us_ddist_combine: add Rh to the discrete distributions program


  Commit: 3e454dd1eca619263c23dc1206fe22fb60c737c4
      https://github.com/ehb54/ultrascan3/commit/3e454dd1eca619263c23dc1206fe22fb60c737c4
  Author: Saeed <github.com/samo38>
  Date:   2026-02-11 (Wed, 11 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_proto_ranges.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_699


  Commit: 482dbb495512e7628e78756240055909d096c476
      https://github.com/ehb54/ultrascan3/commit/482dbb495512e7628e78756240055909d096c476
  Author: Saeed <github.com/samo38>
  Date:   2026-02-12 (Thu, 12 Feb 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_modelmetrics/us_modelmetrics.cpp

  Log Message:
  -----------
  us nm unit for hydrodynamic radius


  Commit: 678ff7f6c7bed9024cc5f25e855c87b95ed0db50
      https://github.com/ehb54/ultrascan3/commit/678ff7f6c7bed9024cc5f25e855c87b95ed0db50
  Author: Saeed Mortezazadeh <saeed.mortezazadeh25 at gmail.com>
  Date:   2026-02-17 (Tue, 17 Feb 2026)

  Changed paths:
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h

  Log Message:
  -----------
  us_ga_init: replace plot checkboxs with radiobuttons


  Commit: 327e1e2fcb6c942e05029608fbe46152c3027639
      https://github.com/ehb54/ultrascan3/commit/327e1e2fcb6c942e05029608fbe46152c3027639
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-18 (Wed, 18 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  GMP | 1. EXP. : dataDist -- do not impose check for mismatched A/B channs. wvls. for S-data, and singe-channel RA data....


  Commit: d787112c42145adc032e986e17be63d8efd5dfda
      https://github.com/ehb54/ultrascan3/commit/d787112c42145adc032e986e17be63d8efd5dfda
  Author: Saeed <github.com/samo38>
  Date:   2026-02-19 (Thu, 19 Feb 2026)

  Changed paths:
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h

  Log Message:
  -----------
  add check_draw_btn


  Commit: ba06a7cd941b1bb63391e1fba5d30baf782f4d3e
      https://github.com/ehb54/ultrascan3/commit/ba06a7cd941b1bb63391e1fba5d30baf782f4d3e
  Author: Saeed <github.com/samo38>
  Date:   2026-02-19 (Thu, 19 Feb 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    A admin/cmake/toolchain-macos.cmake
    A admin/cmake/triplets/arm64-osx-dynamic.cmake
    M admin/cmake/triplets/x64-osx-dynamic.cmake
    R alpha/srcdevel
    R alpha/us.cpp
    M gui/us_analysis_base2.cpp
    M gui/us_analysis_base2.h
    M gui/us_model_loader.cpp
    M gui/us_plot.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_2dsa/us_2dsa.h
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_dcdt/us_dcdt.cpp
    M programs/us_dcdt/us_dcdt.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_fit_meniscus/CMakeLists.txt
    M programs/us_fit_meniscus/us_fit_meniscus.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h
    M programs/us_pcsa/us_pcsa.cpp
    M programs/us_pcsa/us_pcsa.h
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_second_moment/us_second_moment.cpp
    M programs/us_second_moment/us_second_moment.h
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.h
    M scripts/build.sh
    A test/utils/test_us_regex.cpp
    M utils/CMakeLists.txt

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_699


  Commit: ac5f152ac8ba6b0d7f9a65d40f3b7556bc970cee
      https://github.com/ehb54/ultrascan3/commit/ac5f152ac8ba6b0d7f9a65d40f3b7556bc970cee
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-19 (Thu, 19 Feb 2026)

  Changed paths:
    M programs/us_com_project/us_com_project_gui.cpp

  Log Message:
  -----------
  GMP | R&D  -- connect Help btn to help()....


  Commit: 05244eacbe440afd5348b931a95305443dd6673d
      https://github.com/ehb54/ultrascan3/commit/05244eacbe440afd5348b931a95305443dd6673d
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-19 (Thu, 19 Feb 2026)

  Changed paths:
    M gui/us_report_gui.cpp

  Log Message:
  -----------
  GMP | 8. AProf.:Report  -- shift tille for Pseudo3D plots up a bit...


  Commit: fb0e5c780bc7aa696e368d9f6d46b22688fe5707
      https://github.com/ehb54/ultrascan3/commit/fb0e5c780bc7aa696e368d9f6d46b22688fe5707
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-19 (Thu, 19 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_proto_ranges.cpp

  Log Message:
  -----------
  GMP | 7. Ranges.: Gary's selector  -- tried to address increments in selections...


  Commit: a6fe9c7b13c638a88e1390c744efd98cbec59acf
      https://github.com/ehb54/ultrascan3/commit/a6fe9c7b13c638a88e1390c744efd98cbec59acf
  Author: Saeed Mortezazadeh <saeed.mortezazadeh25 at gmail.com>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp

  Log Message:
  -----------
  add anno_label(int) to us_ga_init


  Commit: 935d35d3bb247201260925626ead40c7e5911908
      https://github.com/ehb54/ultrascan3/commit/935d35d3bb247201260925626ead40c7e5911908
  Author: Saeed <github.com/samo38>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h

  Log Message:
  -----------
  add help button to the us_legacy_converter


  Commit: a39e0c3fc901b37000aa384dff633eca9b5f21cc
      https://github.com/ehb54/ultrascan3/commit/a39e0c3fc901b37000aa384dff633eca9b5f21cc
  Author: Saeed <github.com/samo38>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h

  Log Message:
  -----------
  us_query_rmsd: add help button


  Commit: bb36da7046d87e90154684ecee5a92e3521fb317
      https://github.com/ehb54/ultrascan3/commit/bb36da7046d87e90154684ecee5a92e3521fb317
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    A admin/cmake/toolchain-macos.cmake
    A admin/cmake/triplets/arm64-osx-dynamic.cmake
    M admin/cmake/triplets/x64-osx-dynamic.cmake
    R alpha/srcdevel
    R alpha/us.cpp
    M programs/us/CMakeLists.txt
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M scripts/build.sh

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue742


  Commit: 9332b11c468511b91b824048956f411d88e92ba2
      https://github.com/ehb54/ultrascan3/commit/9332b11c468511b91b824048956f411d88e92ba2
  Author: Saeed <github.com/samo38>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  add help buttons


  Commit: 2786677b0b7c3dcd1f55bf7fb1c7a78257a3bada
      https://github.com/ehb54/ultrascan3/commit/2786677b0b7c3dcd1f55bf7fb1c7a78257a3bada
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  Merge pull request #368 from ehb54/alexey-dev-issue742

GMP | 1. EXP. : dataDist -- do not impose check for mismatched A/B channs wvl for S-data


  Commit: 3ca613086ee315038618d9ce0a642da1999e7608
      https://github.com/ehb54/ultrascan3/commit/3ca613086ee315038618d9ce0a642da1999e7608
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue746


  Commit: 67ca8b752f82ede833bb3f16e6e3f2f00801a3b5
      https://github.com/ehb54/ultrascan3/commit/67ca8b752f82ede833bb3f16e6e3f2f00801a3b5
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue515


  Commit: d0890b9202cd432e88acb5573eb12401399ac6df
      https://github.com/ehb54/ultrascan3/commit/d0890b9202cd432e88acb5573eb12401399ac6df
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue702


  Commit: 624105a44700833dbabe95610557269b85c9d938
      https://github.com/ehb54/ultrascan3/commit/624105a44700833dbabe95610557269b85c9d938
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_proto_ranges.cpp

  Log Message:
  -----------
  Merge pull request #372 from ehb54/alexey-dev-issue702

GMP | 7. Ranges.: Gary's selector  -- tried to address increments in wvl selections?


  Commit: 649a36c3a6bfc1942f2c116a43de591572e959a5
      https://github.com/ehb54/ultrascan3/commit/649a36c3a6bfc1942f2c116a43de591572e959a5
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_proto_ranges.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue515


  Commit: 253e03b46f36753d81db75a92dcf958d768d29f1
      https://github.com/ehb54/ultrascan3/commit/253e03b46f36753d81db75a92dcf958d768d29f1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_experiment/us_experiment_gui_optima.h

  Log Message:
  -----------
  [1]GMP | R&D  -- connect Help btn to help()....


  Commit: 739bde48ce1e5596b769170a179b245bced40541
      https://github.com/ehb54/ultrascan3/commit/739bde48ce1e5596b769170a179b245bced40541
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M programs/us_experiment/us_proto_ranges.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue746


  Commit: 2ea90efd5a9ebebf0c1fcef7291f0c14a0a853b6
      https://github.com/ehb54/ultrascan3/commit/2ea90efd5a9ebebf0c1fcef7291f0c14a0a853b6
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M gui/us_report_gui.cpp

  Log Message:
  -----------
  Merge pull request #371 from ehb54/alexey-dev-issue515

GMP | 8. AProf.:Report  -- shift tille for Pseudo3D plots up a bit...


  Commit: 5c69cacb804711a2e1fc839a8bf716a778945747
      https://github.com/ehb54/ultrascan3/commit/5c69cacb804711a2e1fc839a8bf716a778945747
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M gui/us_report_gui.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue746


  Commit: 7bf106993a8f72d94033f56ec908772b1087c0ef
      https://github.com/ehb54/ultrascan3/commit/7bf106993a8f72d94033f56ec908772b1087c0ef
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M .github/workflows/bump-version.yml
    M README.manual
    A buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
    A buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat
    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
    R doc/manual/2dsa/2dsa.body
    R doc/manual/2dsa/2dsa_advan.body
    R doc/manual/2dsa/2dsa_analvv.body
    R doc/manual/2dsa/2dsa_analys.body
    M doc/manual/CMakeLists.txt
    M doc/manual/Makefile
    M doc/manual/README.md
    R doc/manual/advanced_config.body
    R doc/manual/analytes.body
    R doc/manual/associations.body
    R doc/manual/astfem_sim.body
    R doc/manual/buffer_edit.body
    R doc/manual/buffer_new.body
    R doc/manual/buffer_select.body
    R doc/manual/buffer_settings.body
    R doc/manual/cfa_viewer.body
    R doc/manual/colorgradient.body
    R doc/manual/combine_models.body
    R doc/manual/components.body
    R doc/manual/config.body
    R doc/manual/config2.body
    R doc/manual/convert-experiment.body
    R doc/manual/convert-seltrip.body
    R doc/manual/convert.body
    R doc/manual/data_loader.body
    R doc/manual/database_config.body
    R doc/manual/ddist_combine.body
    R doc/manual/dens_match.body
    R doc/manual/dens_match_mparam.body
    R doc/manual/dens_match_rmvmods.body
    R doc/manual/experiment/experiment_cells.body
    R doc/manual/experiment/experiment_general.body
    R doc/manual/experiment/experiment_photomult.body
    R doc/manual/experiment/experiment_rotor.body
    R doc/manual/experiment/experiment_solutions.body
    R doc/manual/experiment/experiment_speeds.body
    R doc/manual/experiment/experiment_upload.body
    R doc/manual/export_legacy.body
    R doc/manual/fe_match/fe_match.body
    R doc/manual/fe_match/fe_match_adv.body
    R doc/manual/fe_match/fe_match_controls.body
    R doc/manual/fe_match/fe_match_lddat.body
    R doc/manual/fe_match/fe_match_simulate.body
    R doc/manual/fit_meniscus.body
    R doc/manual/footer.us3
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    R doc/manual/second_moment.body
    R doc/manual/select_edits.body
    R doc/manual/select_runs.body
    R doc/manual/simparams.body
    R doc/manual/somo.body
    R doc/manual/source/#Makefile#
    M doc/manual/source/conf.py
    R doc/manual/source/make.bat
    M doc/manual/source/requirements.txt
    R doc/manual/template.img.body
    R doc/manual/tidy.conf
    R doc/manual/time_derivative.body
    R doc/manual/ultrascan3.txt
    R doc/manual/us_buffer.body
    R doc/manual/us_edit.body
    R doc/manual/us_edit_mwl.body
    R doc/manual/us_equiltime.body
    R doc/manual/us_fds_filemanager.body
    R doc/manual/us_investigator.body
    R doc/manual/us_modelmetrics.body
    R doc/manual/us_project.body
    R doc/manual/us_solution.body
    R doc/manual/uscol.body
    R doc/manual/uscolor2.body
    R doc/manual/usfont.body
    R doc/manual/usfont2.body
    R doc/manual/vhw_combine.body
    R doc/manual/vhw_distrib_plot.body
    R doc/manual/vhw_enhanced.body
    R doc/manual/wrapped-images.lst
    M gui/us_help.cpp
    M makeall.sh
    M scripts/build.sh
    R vcpkg
    M vcpkg.json

  Log Message:
  -----------
  mod: delete legacy help, integrate sphinx help


  Commit: 3d08b0b47f4e2317e53a69e11dc522f164182ec7
      https://github.com/ehb54/ultrascan3/commit/3d08b0b47f4e2317e53a69e11dc522f164182ec7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake

  Log Message:
  -----------
  mod: release only build for macos


  Commit: 7d351ae823d28a24be8d1406165cb8c4887fb1e7
      https://github.com/ehb54/ultrascan3/commit/7d351ae823d28a24be8d1406165cb8c4887fb1e7
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M gui/us_report_gui.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_proto_ranges.cpp

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: c8f871714964df445fd9b6dac06aa954bcc04d69
      https://github.com/ehb54/ultrascan3/commit/c8f871714964df445fd9b6dac06aa954bcc04d69
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_experiment/us_experiment_gui_optima.h

  Log Message:
  -----------
  Merge pull request #370 from ehb54/alexey-dev-issue746

GMP | R&D  -- connect Help btn to help()....


  Commit: 8eb6af8dac0c0037f48381a8383228ef7f55a358
      https://github.com/ehb54/ultrascan3/commit/8eb6af8dac0c0037f48381a8383228ef7f55a358
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-22 (Sun, 22 Feb 2026)

  Changed paths:
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    R etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm

  Log Message:
  -----------
  mod: remove gmp icons


  Commit: ed169be467f3b5054b1675c832cee30a332f58e1
      https://github.com/ehb54/ultrascan3/commit/ed169be467f3b5054b1675c832cee30a332f58e1
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-22 (Sun, 22 Feb 2026)

  Changed paths:
    A .github/workflows/bump-version.yml
    M .github/workflows/codeql-analysis.yml
    M CMakeLists.txt
    M CMakePresets.json
    M admin/cmake/FindQwt.cmake
    M admin/cmake/GenerateVersion.cmake
    A admin/cmake/toolchain-macos.cmake
    A admin/cmake/triplets/arm64-osx-dynamic.cmake
    A admin/cmake/triplets/x64-mingw-dynamic.cmake
    M admin/cmake/triplets/x64-osx-dynamic.cmake
    R alpha/srcdevel
    R alpha/us.cpp
    A buildsys/vcpkg/overlay-ports/qt5-multimedia/drop-wmf-plugin.patch
    A buildsys/vcpkg/overlay-ports/qt5-multimedia/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qt5-multimedia/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qt5-tools/fix-pkgconfig-qt5uiplugin-not-found.patch
    A buildsys/vcpkg/overlay-ports/qt5-tools/fix-spawnvp-argv.patch
    A buildsys/vcpkg/overlay-ports/qt5-tools/libclang.patch
    A buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qwt-6-1-6/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qwt-6-1-6/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/config.patch
    A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/fix_dll_install.patch
    A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/unofficial-qwt-config.cmake
    A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt5/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/config.patch
    A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/fix_dll_install.patch
    A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/unofficial-qwt-config.cmake
    A buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/vcpkg.json
    R buildsys/vcpkg/overlay-ports/qwt/portfile.cmake
    R buildsys/vcpkg/overlay-ports/qwt/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-1-6-qt5/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-1-6-qt5/qwtplot3d-config.cmake.in
    A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-1-6-qt5/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt5/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt5/qwtplot3d-config.cmake.in
    A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt5/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt6/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt6/qwtplot3d-config.cmake.in
    A buildsys/vcpkg/overlay-ports/qwtplot3d-qwt-6-3-0-qt6/vcpkg.json
    R buildsys/vcpkg/overlay-ports/qwtplot3d/portfile.cmake
    R buildsys/vcpkg/overlay-ports/qwtplot3d/qwtplot3d-config.cmake.in
    R buildsys/vcpkg/overlay-ports/qwtplot3d/vcpkg.json
    M doc/manual/advanced_config.body
    M gui.pri
    M gui/CMakeLists.txt
    M gui/fix-mac-make.sh
    R gui/images.qrc
    M gui/libus_gui.pro
    M gui/qrc_make_adds.txt
    M gui/us_analysis_base2.cpp
    M gui/us_analysis_base2.h
    M gui/us_analyte_gui.cpp
    M gui/us_analyte_gui.h
    M gui/us_buffer_gui.cpp
    M gui/us_buffer_gui.h
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M gui/us_csv_loader.cpp
    M gui/us_csv_loader.h
    M gui/us_experiment_gui.h
    M gui/us_extinctfitter_gui.cpp
    M gui/us_extinction_gui.cpp
    M gui/us_get_run.cpp
    M gui/us_get_run.h
    M gui/us_gui_util.cpp
    M gui/us_images.cpp
    M gui/us_images.h
    M gui/us_intensity.h
    M gui/us_investigator.cpp
    M gui/us_license.cpp
    M gui/us_minimize.cpp
    M gui/us_model_gui.cpp
    M gui/us_model_loader.cpp
    M gui/us_mwl_data.cpp
    M gui/us_new_spectrum.cpp
    M gui/us_new_spectrum.h
    M gui/us_passwd.cpp
    M gui/us_plot.cpp
    M gui/us_plot.h
    M gui/us_plot3d.cpp
    M gui/us_plot3d.h
    M gui/us_predict1.cpp
    M gui/us_predict1.h
    M gui/us_project_gui.h
    M gui/us_report_gui.cpp
    M gui/us_report_gui.h
    M gui/us_run_details2.cpp
    M gui/us_sassoc.cpp
    M gui/us_sassoc.h
    M gui/us_select_triples.h
    M gui/us_selectbox.h
    M gui/us_solution_gui.cpp
    M gui/us_solution_gui.h
    M gui/us_spectrodata.cpp
    M gui/us_spectrodata.h
    M gui/us_widgets.h
    M makeall.sh
    M programs/CMakeLists.txt
    M programs/main1.inc
    M programs/us/CMakeLists.txt
    M programs/us/revision.sh
    M programs/us/us.cpp
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_2dsa/us_2dsa.h
    M programs/us_2dsa/us_show_norm.cpp
    M programs/us_abde/us_abde_main.cpp
    M programs/us_abde/us_norm_profile.cpp
    M programs/us_abde/us_norm_profile.h
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
    M programs/us_autoflow_analysis/CMakeLists.txt
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.h
    M programs/us_buoyancy/us_buoyancy.cpp
    M programs/us_buoyancy/us_buoyancy.h
    M programs/us_colorgradient/us_colorgradient.cpp
    M programs/us_com_project/CMakeLists.txt
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_com_project_academic/CMakeLists.txt
    M programs/us_combine_models/us_combine_models.cpp
    M programs/us_config/us_color.cpp
    M programs/us_config/us_font.cpp
    M programs/us_config/us_font.h
    M programs/us_config/us_newxpnhost_db.cpp
    M programs/us_config/us_xpnhost_db.cpp
    M programs/us_dcdt/us_dcdt.cpp
    M programs/us_dcdt/us_dcdt.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_density_match/us_density_match.cpp
    M programs/us_dmga_init/us_dmga_init.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M programs/us_edit/us_edit_scan.cpp
    M programs/us_edit/us_edit_scan.h
    M programs/us_esigner_gmp/us_esigner_gmp.cpp
    M programs/us_esigner_gmp/us_esigner_gmp.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_export_legacy/us_export.cpp
    M programs/us_fds_filemanager/us_fds_filemanager.cpp
    M programs/us_fematch/CMakeLists.txt
    M programs/us_fematch/us_fematch.cpp
    M programs/us_fematch/us_plot_control_fem.cpp
    M programs/us_fematch/us_plot_control_fem.h
    M programs/us_fit_meniscus/CMakeLists.txt
    M programs/us_fit_meniscus/us_fit_meniscus.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_globalequil/us_eqfit_control.cpp
    M programs/us_globalequil/us_eqhistogram.cpp
    M programs/us_globalequil/us_eqmath.cpp
    M programs/us_globalequil/us_eqmodel_control.cpp
    M programs/us_globalequil/us_eqreporter.cpp
    M programs/us_globalequil/us_fit_worker.cpp
    M programs/us_globalequil/us_globalequil.cpp
    M programs/us_globalequil/us_globalequil.h
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_manage_data/us_data_model.cpp
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_mwl_species_fit/CMakeLists.txt
    M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
    M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h
    M programs/us_mwl_spectra/us_mwl_spectra.cpp
    M programs/us_mwl_spectra/us_mwls_pltctl.cpp
    M programs/us_mwl_spectra/us_mwls_pltctl.h
    M programs/us_mwlr_viewer/us_mwl_pltctrl.cpp
    M programs/us_mwlr_viewer/us_mwl_pltctrl.h
    M programs/us_mwlr_viewer/us_mwlr_viewer.cpp
    M programs/us_pcsa/us_mlplot.cpp
    M programs/us_pcsa/us_mrecs_loader.cpp
    M programs/us_pcsa/us_pcsa.cpp
    M programs/us_pcsa/us_pcsa.h
    M programs/us_pcsa/us_rpscan.cpp
    M programs/us_pcsa/us_rpscan.h
    M programs/us_protocol_dev/CMakeLists.txt
    M programs/us_protocol_dev/us_protocol_dev_gui.h
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo_absorbance/us_add_refScan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    M programs/us_pseudo_absorbance/us_pseudo_absorbance.cpp
    M programs/us_pseudo_absorbance/us_remove_ri.cpp
    M programs/us_pseudo_absorbance/us_remove_ri.h
    M programs/us_query_rmsd/CMakeLists.txt
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_ramp/us_experiment_ra.cpp
    M programs/us_ramp/us_get_dbrun_ra.cpp
    M programs/us_ramp/us_mwlramp.cpp
    M programs/us_ramp/us_ramp.cpp
    M programs/us_ramp/us_ramp_gui.cpp
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_reporter_gmp/CMakeLists.txt
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_rotor_calibration/us_rotor_calibration.cpp
    M programs/us_rotor_calibration/us_rotor_calibration.h
    M programs/us_second_moment/us_second_moment.cpp
    M programs/us_second_moment/us_second_moment.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h
    M programs/us_vhw_combine/us_vhw_combine.cpp
    M programs/us_vhw_combine/us_vhwc_pltctl.cpp
    M programs/us_vhw_combine/us_vhwc_pltctl.h
    M programs/us_vhw_enhanced/us_distrib_plot.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.h
    M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
    M programs/us_xpn_viewer/us_xpn_viewer_gui.h
    M qwtplot3d/CMakeLists.txt
    M qwtplot3d/include/qwt3d_io_gl2ps.h
    M qwtplot3d/include/qwt3d_openglhelper.h
    M qwtplot3d/include/qwt3d_plot.h
    M qwtplot3d/include/qwt3d_surfaceplot.h
    M qwtplot3d/qwtplot3d.pro
    M qwtplot3d/src/qwt3d_io.cpp
    M qwtplot3d/src/qwt3d_io_gl2ps.cpp
    M qwtplot3d/src/qwt3d_label.cpp
    M qwtplot3d/src/qwt3d_lighting.cpp
    M qwtplot3d/src/qwt3d_movements.cpp
    M qwtplot3d/src/qwt3d_plot.cpp
    M qwtplot3d/src/qwt3d_surfaceplot.cpp
    M scripts/build.sh
    M test/utils/CMakeLists.txt
    M test/utils/test_us_ana_profile.cpp
    A test/utils/test_us_regex.cpp
    M test/utils/test_us_simparms.cpp
    M utils/CMakeLists.txt
    M utils/ius_db2.h
    M utils/libus_utils.pro
    M utils/us_ana_profile.cpp
    M utils/us_ana_profile.h
    M utils/us_analyte.cpp
    M utils/us_analyte.h
    M utils/us_archive.cpp
    M utils/us_archive.h
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_astfem_rsa.cpp
    M utils/us_astfem_rsa.h
    M utils/us_buffer.cpp
    M utils/us_buffer.h
    M utils/us_cfa_data.cpp
    M utils/us_cfa_data.h
    M utils/us_constants.cpp
    M utils/us_constants.h
    M utils/us_convert.cpp
    M utils/us_convert.h
    M utils/us_convertio.cpp
    M utils/us_convertio.h
    M utils/us_crc.cpp
    M utils/us_crc.h
    M utils/us_crypto.cpp
    M utils/us_crypto.h
    M utils/us_csv_data.cpp
    M utils/us_csv_data.h
    M utils/us_dataIO.cpp
    M utils/us_dataIO.h
    M utils/us_datafiles.cpp
    M utils/us_datafiles.h
    M utils/us_db2.cpp
    M utils/us_db2.h
    M utils/us_dmga_constr.cpp
    M utils/us_eprofile.h
    M utils/us_experiment.cpp
    M utils/us_experiment.h
    M utils/us_extern.h
    M utils/us_geturl.cpp
    M utils/us_geturl.h
    M utils/us_global.cpp
    M utils/us_global.h
    M utils/us_gzip.cpp
    M utils/us_gzip.h
    M utils/us_hardware.h
    M utils/us_http_post.h
    M utils/us_hydrosim.cpp
    M utils/us_hydrosim.h
    M utils/us_lamm_astfvm.cpp
    M utils/us_lamm_astfvm.h
    M utils/us_license_t.cpp
    M utils/us_license_t.h
    M utils/us_link_ssl.cpp
    M utils/us_link_ssl.h
    M utils/us_lm.cpp
    M utils/us_local_server.cpp
    M utils/us_local_server.h
    M utils/us_math2.cpp
    M utils/us_math2.h
    M utils/us_matrix.cpp
    M utils/us_matrix.h
    M utils/us_memory.cpp
    M utils/us_memory.h
    M utils/us_model.cpp
    M utils/us_model.h
    M utils/us_noise.cpp
    M utils/us_noise.h
    M utils/us_pcsa_modelrec.cpp
    M utils/us_pcsa_modelrec.h
    M utils/us_project.cpp
    M utils/us_protocol_util.cpp
    M utils/us_protocol_util.h
    M utils/us_report.cpp
    M utils/us_report.h
    M utils/us_report_gmp.cpp
    M utils/us_rotor.cpp
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h
    M utils/us_settings.cpp
    M utils/us_settings.h
    M utils/us_simparms.cpp
    M utils/us_simparms.h
    M utils/us_sleep.h
    M utils/us_solute.cpp
    M utils/us_solute.h
    M utils/us_solution.cpp
    M utils/us_solution.h
    M utils/us_solution_vals.h
    M utils/us_solve_sim.cpp
    M utils/us_stiffbase.cpp
    M utils/us_stiffbase.h
    M utils/us_tar.cpp
    M utils/us_tar.h
    M utils/us_time_state.h
    M utils/us_timer.cpp
    M utils/us_timer.h
    M utils/us_util.cpp
    M utils/us_util.h
    A utils/us_utils_qt.h
    M utils/us_vector.cpp
    M utils/us_vector.h
    M utils/us_xpn_data.cpp
    M utils/us_xpn_data.h
    M utils/us_zsolute.cpp
    M utils/us_zsolute.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into 666-bug-icons-dont-fill-space-on-new-macos


  Commit: a69727d693e60c02d3b9c4db2e16387437816ce5
      https://github.com/ehb54/ultrascan3/commit/a69727d693e60c02d3b9c4db2e16387437816ce5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-23 (Mon, 23 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    A admin/cmake/triplets/arm64-windows.cmake
    M gui/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.ps1
    M vcpkg.json

  Log Message:
  -----------
  Windows ARM64 build fixes: triplet, export macros, windeployqt


  Commit: 84d482ad6f56b2e3acc6c957d97719052eaefbd7
      https://github.com/ehb54/ultrascan3/commit/84d482ad6f56b2e3acc6c957d97719052eaefbd7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-23 (Mon, 23 Feb 2026)

  Changed paths:
    M CMakePresets.json
    R admin/cmake/toolchain-macos.cmake
    A admin/cmake/toolchain.cmake
    A scripts/build.bat
    M scripts/build.ps1
    M scripts/build.sh
    R vcpkg

  Log Message:
  -----------
  mod: add build for windows script and standardize linux and macos build


  Commit: d0f42eef0df776ad01ea51cc7505eeb80878b2d8
      https://github.com/ehb54/ultrascan3/commit/d0f42eef0df776ad01ea51cc7505eeb80878b2d8
  Author: Saeed <github.com/samo38>
  Date:   2026-02-23 (Mon, 23 Feb 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: removed unnecessary widgets


  Commit: e43bca35c3066c669ca922450241c6bdf5b4de40
      https://github.com/ehb54/ultrascan3/commit/e43bca35c3066c669ca922450241c6bdf5b4de40
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-23 (Mon, 23 Feb 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  fix: processor core check


  Commit: 70a4fd76fe5b6edf065fdf2b5f5ba0bcedb2165e
      https://github.com/ehb54/ultrascan3/commit/70a4fd76fe5b6edf065fdf2b5f5ba0bcedb2165e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-23 (Mon, 23 Feb 2026)

  Changed paths:
    M admin/cmake/toolchain.cmake

  Log Message:
  -----------
  fix: remove force


  Commit: 6d4f2ac655f09a8a6b067f5a54b974908ab10aaf
      https://github.com/ehb54/ultrascan3/commit/6d4f2ac655f09a8a6b067f5a54b974908ab10aaf
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-23 (Mon, 23 Feb 2026)

  Changed paths:
    M admin/cmake/toolchain.cmake

  Log Message:
  -----------
  fix: linux arm64 now handled correctly


  Commit: 534da76a2eb5090416dc3e2fa4416db272ac9b91
      https://github.com/ehb54/ultrascan3/commit/534da76a2eb5090416dc3e2fa4416db272ac9b91
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-24 (Tue, 24 Feb 2026)

  Changed paths:
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_experiment/us_experiment_gui_optima.h

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 98c5f9693e9265ed8f1515603098010def86eb70
      https://github.com/ehb54/ultrascan3/commit/98c5f9693e9265ed8f1515603098010def86eb70
  Author: Saeed <github.com/samo38>
  Date:   2026-02-24 (Tue, 24 Feb 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  rename labels


  Commit: 0880dfb2dd0e8e00e5613ff36d94c03e11edd27c
      https://github.com/ehb54/ultrascan3/commit/0880dfb2dd0e8e00e5613ff36d94c03e11edd27c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-24 (Tue, 24 Feb 2026)

  Changed paths:
    M CMakePresets.json
    M admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake

  Log Message:
  -----------
  fix: linux arm64 dynamic and config path added


  Commit: 95f4bf13cb912979ba31f07969ede459ee9a3cfb
      https://github.com/ehb54/ultrascan3/commit/95f4bf13cb912979ba31f07969ede459ee9a3cfb
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-24 (Tue, 24 Feb 2026)

  Changed paths:
    M etc/etc_belongs_list.txt
    A etc/us3-GMP-icon-128x128.ico
    A etc/us3-GMP-icon-128x128.png
    A etc/us3-GMP-icon-128x128.xpm
    A etc/us3-GMP-icon-32x32.ico
    A etc/us3-GMP-icon-32x32.png
    A etc/us3-GMP-icon-32x32.xpm
    A etc/us3-GMP-icon-48x48.ico
    A etc/us3-GMP-icon-48x48.png
    A etc/us3-GMP-icon-48x48.xpm

  Log Message:
  -----------
  fix: returned gmp icons back to branch because at least one is used us_comproject.desktop:Icon=/opt/ultrascan3/etc/us3-GMP-icon-128x128.png


  Commit: d28e726d4e40aae7be0f55ed03c1e7fe45e36d00
      https://github.com/ehb54/ultrascan3/commit/d28e726d4e40aae7be0f55ed03c1e7fe45e36d00
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-24 (Tue, 24 Feb 2026)

  Changed paths:
    M doc/manual/source/colorgradient.rst
    M doc/manual/source/conf.py
    M doc/manual/source/config.rst
    M doc/manual/source/experiment/range.rst
    M doc/manual/source/export_legacy.rst
    M doc/manual/source/fe_match/fe_match_main.rst
    M doc/manual/source/fe_match/fe_match_simulate.rst
    M doc/manual/source/ga_initialize.rst
    M doc/manual/source/grid_editor.rst
    M doc/manual/source/manage_data.rst
    M doc/manual/source/mwl_spectra.rst
    M doc/manual/source/mwlr_viewer.rst
    M doc/manual/source/pcsa/pcsa_analys.rst
    M doc/manual/source/requirements.txt
    M doc/manual/source/us_project.rst
    M doc/manual/source/vhw_combine.rst

  Log Message:
  -----------
  mod: migrate to sphinx-design from subfigure


  Commit: 8cef6842fe3282a17f7fe6a11688d966a17b86da
      https://github.com/ehb54/ultrascan3/commit/8cef6842fe3282a17f7fe6a11688d966a17b86da
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-25 (Wed, 25 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    R admin/cmake/toolchain-macos.cmake
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M programs/us/CMakeLists.txt
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    R vcpkg
    M vcpkg.json

  Log Message:
  -----------
  Merge pull request #337 from ehb54/666-bug-icons-dont-fill-space-on-new-macos

New Icons


  Commit: f22ac1211864fd6e1e0f4bd0ab603df9a6703163
      https://github.com/ehb54/ultrascan3/commit/f22ac1211864fd6e1e0f4bd0ab603df9a6703163
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M utils/us_astfem_math.cpp
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Add support for `TIMESTATE_TYPE` and `IMPORT_TYPE` in `US_TimeState`: introduce enums, accessor methods, and XML serialization logic.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 92969167df27d9df138b7faee2cb16d988228790
      https://github.com/ehb54/ultrascan3/commit/92969167df27d9df138b7faee2cb16d988228790
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h

  Log Message:
  -----------
  Refactor `US_AstfemMath`: add parameter names to function signatures, update `check_acceleration` to include optional `timestate` argument, and adjust related logic.


  Commit: 8318d566a89cb3e06093e1d79d56d11d3488103a
      https://github.com/ehb54/ultrascan3/commit/8318d566a89cb3e06093e1d79d56d11d3488103a
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    R admin/cmake/toolchain-macos.cmake
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M programs/us/CMakeLists.txt
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 4bb72c42f9441f20b9b825741d31d186a728fe4c
      https://github.com/ehb54/ultrascan3/commit/4bb72c42f9441f20b9b825741d31d186a728fe4c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-osx-dynamic.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    M admin/cmake/triplets/x64-osx-dynamic.cmake
    R alpha/srcdevel
    R alpha/us.cpp
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M gui/us_analysis_base2.cpp
    M gui/us_analysis_base2.h
    M gui/us_csv_loader.cpp
    M gui/us_model_loader.cpp
    M gui/us_plot.cpp
    M gui/us_report_gui.cpp
    M gui/us_report_gui.h
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_2dsa/us_2dsa.h
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_dcdt/us_dcdt.cpp
    M programs/us_dcdt/us_dcdt.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_fit_meniscus/CMakeLists.txt
    M programs/us_fit_meniscus/us_fit_meniscus.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.h
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.h
    M programs/us_pcsa/us_pcsa.cpp
    M programs/us_pcsa/us_pcsa.h
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_second_moment/us_second_moment.cpp
    M programs/us_second_moment/us_second_moment.h
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.h
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    A test/utils/test_us_regex.cpp
    M utils/CMakeLists.txt
    M utils/us_csv_data.cpp
    R vcpkg
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into ticket_747


  Commit: 89b7691a714d92e99e335e23378d225aa3b1b536
      https://github.com/ehb54/ultrascan3/commit/89b7691a714d92e99e335e23378d225aa3b1b536
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M programs/us/revision.sh

  Log Message:
  -----------
  fix revision.sh checks osx/linux compat.


  Commit: b1b7791e9c3922286c2d9d56c2f0a378911720ee
      https://github.com/ehb54/ultrascan3/commit/b1b7791e9c3922286c2d9d56c2f0a378911720ee
  Author: Saeed <github.com/samo38>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h

  Log Message:
  -----------
  add Rh to us_pseudo3d_combine


  Commit: bd32e3b102e354732b319bc5687719785b83d3f2
      https://github.com/ehb54/ultrascan3/commit/bd32e3b102e354732b319bc5687719785b83d3f2
  Author: Saeed <github.com/samo38>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    R admin/cmake/toolchain-macos.cmake
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M gui/us_report_gui.cpp
    M programs/us/CMakeLists.txt
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    R vcpkg
    M vcpkg.json

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_699


  Commit: 8c545d6f5c77a42afc10d3badcaa8f9b34866f2d
      https://github.com/ehb54/ultrascan3/commit/8c545d6f5c77a42afc10d3badcaa8f9b34866f2d
  Author: Saeed <github.com/samo38>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    R admin/cmake/toolchain-macos.cmake
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M gui/us_report_gui.cpp
    M programs/us/CMakeLists.txt
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    R vcpkg
    M vcpkg.json

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_748


  Commit: 38b548536c2c0458b2cc85f5663ca56eb9538f3f
      https://github.com/ehb54/ultrascan3/commit/38b548536c2c0458b2cc85f5663ca56eb9538f3f
  Author: HabGab <gabirh at myumanitoba.ca>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M gui/us_spectrodata.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h

  Log Message:
  -----------
  Merge pull request #362 from samo38/ticket_699

Ticket 699: adding Hydrodynamic radius to additional plotting programs


  Commit: 572bb723ed591be3225aacbdbc387c93c17ca792
      https://github.com/ehb54/ultrascan3/commit/572bb723ed591be3225aacbdbc387c93c17ca792
  Author: emre brookes <ehb54 at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M gui/us_spectrodata.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


  Commit: 6dd71c26fbdb258b25259c7c5e41be982d54a809
      https://github.com/ehb54/ultrascan3/commit/6dd71c26fbdb258b25259c7c5e41be982d54a809
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Refactor US_Crypto for AES-256-GCM encryption


  Commit: 1461b65d9eae700e3429db2b7c19c35361fea861
      https://github.com/ehb54/ultrascan3/commit/1461b65d9eae700e3429db2b7c19c35361fea861
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.h

  Log Message:
  -----------
  Add decryptLegacy function and update decrypt signature


  Commit: ed2647558eb754fa66c8e7d52d3f0b8efac2c53c
      https://github.com/ehb54/ultrascan3/commit/ed2647558eb754fa66c8e7d52d3f0b8efac2c53c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp

  Log Message:
  -----------
  Update encryption tests to expect invalid results


  Commit: 27402a271781fa16ae00a693e5ce8e3f06e8e33e
      https://github.com/ehb54/ultrascan3/commit/27402a271781fa16ae00a693e5ce8e3f06e8e33e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.h

  Log Message:
  -----------
  Fix parameter description for decrypt functions


  Commit: 344a4930c5819ebfd2875eccc84d0a44a446ee31
      https://github.com/ehb54/ultrascan3/commit/344a4930c5819ebfd2875eccc84d0a44a446ee31
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix encryption finalization logic in us_crypto.cpp


  Commit: 817a32ad7fe5e5c35ec0479673a2f4c20a7a8e3c
      https://github.com/ehb54/ultrascan3/commit/817a32ad7fe5e5c35ec0479673a2f4c20a7a8e3c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix tag data retrieval in EVP_CIPHER_CTX_ctrl


  Commit: 85100ef73842bc75a8f210f7b9038301adae82db
      https://github.com/ehb54/ultrascan3/commit/85100ef73842bc75a8f210f7b9038301adae82db
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M gui/us_spectrodata.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 7f63285b165bc88c2a317f9f368082e0d24d8861
      https://github.com/ehb54/ultrascan3/commit/7f63285b165bc88c2a317f9f368082e0d24d8861
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-28 (Sat, 28 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    A admin/cmake/MacDeploy.cmake
    R buildsys/vcpkg/overlay-ports/qt5-tools/fix-pkgconfig-qt5uiplugin-not-found.patch
    R buildsys/vcpkg/overlay-ports/qt5-tools/fix-spawnvp-argv.patch
    R buildsys/vcpkg/overlay-ports/qt5-tools/libclang.patch
    R buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    R buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    M doc/manual/CMakeLists.txt
    A doc/manual/StageAssistant.cmake
    M doc/manual/source/mwl_spectra.rst
    M gui/CMakeLists.txt
    M gui/us_help.cpp
    M programs/us_helpdaemon/us_helpdaemon.cpp
    M qwtplot3d/CMakeLists.txt
    M scripts/build.sh
    M vcpkg.json

  Log Message:
  -----------
  fix: fix qt help search and implement dmg


  Commit: 8e3d67b30d1a4eaf6faf0d18d80a835288ee5ae7
      https://github.com/ehb54/ultrascan3/commit/8e3d67b30d1a4eaf6faf0d18d80a835288ee5ae7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-28 (Sat, 28 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    R admin/cmake/toolchain-macos.cmake
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M gui/us_spectrodata.h
    M programs/us/CMakeLists.txt
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    M vcpkg.json

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2

# Conflicts:
#	.gitignore
#	scripts/build.sh


  Commit: ef3356b450a93ec526f92ee27da0a9bfcfa9c04a
      https://github.com/ehb54/ultrascan3/commit/ef3356b450a93ec526f92ee27da0a9bfcfa9c04a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-01 (Sun, 01 Mar 2026)

  Changed paths:
    M LICENSE.txt

  Log Message:
  -----------
  fix: text was original utf-8 so quotes became questions marks with ascii tool. Changed ? to ascii quotes.


  Commit: 096f3590c1a57a798a0c13863e80d333a690b4cf
      https://github.com/ehb54/ultrascan3/commit/096f3590c1a57a798a0c13863e80d333a690b4cf
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix type casting for GCM tag data


  Commit: ca6f560338cfe03c4fa0e60bb95577b526dbf2ed
      https://github.com/ehb54/ultrascan3/commit/ca6f560338cfe03c4fa0e60bb95577b526dbf2ed
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Fix type casting for GCM tag in us_crypto.cpp


  Commit: 82c2dc2269b90376cf1f69ca3f88b4bee38c641e
      https://github.com/ehb54/ultrascan3/commit/82c2dc2269b90376cf1f69ca3f88b4bee38c641e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    R admin/cmake/MacDeploy.cmake
    A admin/cmake/packaging/macos/MacDeploy.cmake
    A admin/cmake/packaging/macos/MacOsPkg.cmake
    A pkg/macos/component.plist
    A pkg/macos/distribution.xml.in
    A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist
    A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3
    A pkg/macos/postinstall
    A pkg/macos/preinstall
    A pkg/macos/resources/Welcome.txt.in
    A pkg/macos/resources/background.png
    A pkg/macos/ultrascan_sysctl.plist
    A pkg/macos/uninstall.sh
    M scripts/build.sh

  Log Message:
  -----------
  add: launcher and packaging step


  Commit: 88ef4e481d1b4ea751d997b156e3782f1befce93
      https://github.com/ehb54/ultrascan3/commit/88ef4e481d1b4ea751d997b156e3782f1befce93
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    M admin/cmake/packaging/macos/MacDeploy.cmake
    M admin/cmake/toolchain.cmake
    M doc/manual/CMakeLists.txt
    M doc/manual/StageAssistant.cmake

  Log Message:
  -----------
  add: working qt6 build and install


  Commit: 5ee4575063fb99b0b70eb335bc0d88e3a903b857
      https://github.com/ehb54/ultrascan3/commit/5ee4575063fb99b0b70eb335bc0d88e3a903b857
  Author: Saeed <github.com/samo38>
  Date:   2026-03-03 (Tue, 03 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: update GUI and DataProfile


  Commit: d864a615e96c4dd2c66a738120c35c6eb556d647
      https://github.com/ehb54/ultrascan3/commit/d864a615e96c4dd2c66a738120c35c6eb556d647
  Author: Saeed <github.com/samo38>
  Date:   2026-03-03 (Tue, 03 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: use minmax


  Commit: 644141ae003ec988b86eb7b01c1e21cf208b0dac
      https://github.com/ehb54/ultrascan3/commit/644141ae003ec988b86eb7b01c1e21cf208b0dac
  Author: Saeed <github.com/samo38>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M gui/us_spectrodata.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_748


  Commit: d1215ab67e2f9e4aa0bcf349eac8da7f58a9be6a
      https://github.com/ehb54/ultrascan3/commit/d1215ab67e2f9e4aa0bcf349eac8da7f58a9be6a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm

  Log Message:
  -----------
  mod: update 128x128 us-gmp icon and remove others


  Commit: ff02149480e771cbc205a241cee2322ae52a5ea3
      https://github.com/ehb54/ultrascan3/commit/ff02149480e771cbc205a241cee2322ae52a5ea3
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R propignore
    R proppng
    R proptext

  Log Message:
  -----------
  mod: delete svn files


  Commit: 0d744f1905b897d66da68befb43637e8ac4cd7bc
      https://github.com/ehb54/ultrascan3/commit/0d744f1905b897d66da68befb43637e8ac4cd7bc
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R README.linguist
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  mod: remove deprecated translation files and settings


  Commit: 04583d8a1b0bcf01875f31b93a12343610284126
      https://github.com/ehb54/ultrascan3/commit/04583d8a1b0bcf01875f31b93a12343610284126
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    A admin/cmake/packaging/windows/WinDeploy.cmake
    A admin/cmake/packaging/windows/WinPkg.cmake

  Log Message:
  -----------
  add: windows installer


  Commit: 20b958cec1d253988daedd88a2fec65efd28448d
      https://github.com/ehb54/ultrascan3/commit/20b958cec1d253988daedd88a2fec65efd28448d
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  add: pkg command to build.ps1


  Commit: 722ffd5c4e0c7d1f2f2c27127e065270ae3c7598
      https://github.com/ehb54/ultrascan3/commit/722ffd5c4e0c7d1f2f2c27127e065270ae3c7598
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm

  Log Message:
  -----------
  Merge pull request #380 from ehb54/773-request-update-us-3-gmp-icons

Icon Maintenance


  Commit: 47dbf4a3837c551d64f6436f25aa7f5f7d482fad
      https://github.com/ehb54/ultrascan3/commit/47dbf4a3837c551d64f6436f25aa7f5f7d482fad
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:

  Log Message:
  -----------
  Merge branch 'main' into 775-bug-svn-files


  Commit: 93fb5f9f839b1aea6d85ed568acc18030ebed5c1
      https://github.com/ehb54/ultrascan3/commit/93fb5f9f839b1aea6d85ed568acc18030ebed5c1
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:

  Log Message:
  -----------
  Merge branch 'main' into 756-bug-translation-maintenance


  Commit: fe5370afd345acf40744a8c872c09eef88887bba
      https://github.com/ehb54/ultrascan3/commit/fe5370afd345acf40744a8c872c09eef88887bba
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R propignore
    R proppng
    R proptext

  Log Message:
  -----------
  Merge pull request #381 from ehb54/775-bug-svn-files

Remove Legacy SVN Files


  Commit: b1b7bdf318164406971f4188a7b3cf8b0aacbbaa
      https://github.com/ehb54/ultrascan3/commit/b1b7bdf318164406971f4188a7b3cf8b0aacbbaa
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:

  Log Message:
  -----------
  Merge branch 'main' into 756-bug-translation-maintenance


  Commit: 90e9cf2eb989a85420f4668067092a143d4457a9
      https://github.com/ehb54/ultrascan3/commit/90e9cf2eb989a85420f4668067092a143d4457a9
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    R README.linguist
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  Merge pull request #382 from ehb54/756-bug-translation-maintenance

Translation File Maintenance


  Commit: 2698e05dd320a374785cab43ed05a52db3c5c3a7
      https://github.com/ehb54/ultrascan3/commit/2698e05dd320a374785cab43ed05a52db3c5c3a7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinPkg.cmake
    M scripts/build.ps1

  Log Message:
  -----------
  fix: missing programs in installer package


  Commit: 499648d1ea27751d008981e0d9f1447cfbef7072
      https://github.com/ehb54/ultrascan3/commit/499648d1ea27751d008981e0d9f1447cfbef7072
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M scripts/build.ps1

  Log Message:
  -----------
  fix: missing sphinx on windows build


  Commit: 300852b8d51c2733817729fab46d6d0e68f5e717
      https://github.com/ehb54/ultrascan3/commit/300852b8d51c2733817729fab46d6d0e68f5e717
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_crypto_buffer_overflow


  Commit: 2fcc6637f35ea3ab3c8e1450a06b60932d033f1b
      https://github.com/ehb54/ultrascan3/commit/2fcc6637f35ea3ab3c8e1450a06b60932d033f1b
  Author: Saeed <samo38:github>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: update


  Commit: 9c62b533654400def76e5db0eb8c8f4924ff66d1
      https://github.com/ehb54/ultrascan3/commit/9c62b533654400def76e5db0eb8c8f4924ff66d1
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_spectrodata.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M utils/libus_utils.pro

  Log Message:
  -----------
  Merge pull request #383 from ehb54/main

Update feature branch to main


  Commit: 0f7d005ceda3b8031c1180200237d736f60a1b4c
      https://github.com/ehb54/ultrascan3/commit/0f7d005ceda3b8031c1180200237d736f60a1b4c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h

  Log Message:
  -----------
  Merge pull request #379 from ehb54/lukas/us_crypto_buffer_overflow

us_crypto: Avoid buffer overflow, support longer passwords, introduce safer encryption


  Commit: 780dac6301b72554362f7cc2944a17a6c64d2aa5
      https://github.com/ehb54/ultrascan3/commit/780dac6301b72554362f7cc2944a17a6c64d2aa5
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Refactor `US_AstfemMath`: improve low acceleration rate handling by adding corrections for slow experiments and original `timestate` checks.


  Commit: 01be09bde2a7cc42512e4a4f215108a9419c0d32
      https://github.com/ehb54/ultrascan3/commit/01be09bde2a7cc42512e4a4f215108a9419c0d32
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.h

  Log Message:
  -----------
  Add `prepareTimeState` method and integrate `US_TimeState` into `US_ConvertGui`


  Commit: e0424b860fb5077ab33b7e5db663b721da5ba290
      https://github.com/ehb54/ultrascan3/commit/e0424b860fb5077ab33b7e5db663b721da5ba290
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp

  Log Message:
  -----------
  Refactor `US_ConvertGui`: implement `prepareTimeState` for streamlined time state preparation and integrate into speed step processing logic.


  Commit: 97b756dde416093dc9c7bb730c4958161c0e0232
      https://github.com/ehb54/ultrascan3/commit/97b756dde416093dc9c7bb730c4958161c0e0232
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/timestate


  Commit: b2c2afd33a8ed941e547021628bcb32abea1675a
      https://github.com/ehb54/ultrascan3/commit/b2c2afd33a8ed941e547021628bcb32abea1675a
  Author: emre brookes <ehb54 at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M utils/libus_utils.pro
    M utils/us_crypto.cpp
    M utils/us_crypto.h

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


  Commit: ea9b77b204f53d6694d97541134564d0606916a3
      https://github.com/ehb54/ultrascan3/commit/ea9b77b204f53d6694d97541134564d0606916a3
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp

  Log Message:
  -----------
  Refactor `US_ConvertGui`: streamline file handling logic in time state preparation and enable GUI button state based on file existence.


  Commit: 11fa3a30cb824bce1c32920aa3a6b2c307f54f1a
      https://github.com/ehb54/ultrascan3/commit/11fa3a30cb824bce1c32920aa3a6b2c307f54f1a
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Refactor `US_AstfemMath`: replace `qDebug` with `DbgLv` for consistent debug logging.


  Commit: 5eb4adb03f6cf6e0ab2a6163a5d614d3b034d383
      https://github.com/ehb54/ultrascan3/commit/5eb4adb03f6cf6e0ab2a6163a5d614d3b034d383
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M test/utils/test_us_time_state.cpp

  Log Message:
  -----------
  Update `test_us_time_state`: adjust expected version to `2.2` in origin test.


  Commit: 41a6910c567f5d60a14f6a802af0a1134eef03c4
      https://github.com/ehb54/ultrascan3/commit/41a6910c567f5d60a14f6a802af0a1134eef03c4
  Author: Saeed <samo38:github>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  add argsort and sort functions


  Commit: bc8f22c93dcad653e16c52717a9386d9a99c67c9
      https://github.com/ehb54/ultrascan3/commit/bc8f22c93dcad653e16c52717a9386d9a99c67c9
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Refactor password re-encryption logic


  Commit: 93b2e5a2535f0de5b6fe2b4384a60d509571f6d4
      https://github.com/ehb54/ultrascan3/commit/93b2e5a2535f0de5b6fe2b4384a60d509571f6d4
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Check for empty cipherHex and optimize database loop

Added a check for empty cipherHex before decryption and modified the database loop to use a reference.


  Commit: 6a9245189a1804e4557df78035f6f4401a5883ea
      https://github.com/ehb54/ultrascan3/commit/6a9245189a1804e4557df78035f6f4401a5883ea
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M doc/manual/Makefile
    M doc/manual/source/2dsa/2dsa_adv.rst
    M doc/manual/source/2dsa/2dsa_analys.rst
    M doc/manual/source/2dsa/2dsa_main.rst
    M doc/manual/source/2dsa/index.rst
    M doc/manual/source/3d_plot.rst
    R doc/manual/source/_static/custom.css
    R doc/manual/source/_static/images/2dsa_3dplot.png
    R doc/manual/source/_static/images/2dsa_advan.png
    R doc/manual/source/_static/images/2dsa_analvv.png
    R doc/manual/source/_static/images/2dsa_analys.png
    R doc/manual/source/_static/images/2dsa_main-c.png
    R doc/manual/source/_static/images/2dsa_main-o.png
    R doc/manual/source/_static/images/2dsa_resplot.png
    R doc/manual/source/_static/images/D20W_bar.png
    R doc/manual/source/_static/images/MW-bar.png
    R doc/manual/source/_static/images/RINplot.png
    R doc/manual/source/_static/images/TINplot.png
    R doc/manual/source/_static/images/UltraScan-logo.png
    R doc/manual/source/_static/images/add_RIN-TIN.png
    R doc/manual/source/_static/images/add_RIN.png
    R doc/manual/source/_static/images/add_TIN.png
    R doc/manual/source/_static/images/advanced_config.png
    R doc/manual/source/_static/images/analyte_details.png
    R doc/manual/source/_static/images/analyte_edit.png
    R doc/manual/source/_static/images/analyte_edit_spec.png
    R doc/manual/source/_static/images/analyte_new_sequence.png
    R doc/manual/source/_static/images/analyte_newc.png
    R doc/manual/source/_static/images/analyte_newd.png
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    R doc/manual/source/_static/images/analyte_sequence.png
    R doc/manual/source/_static/images/analyte_settings.png
    R doc/manual/source/_static/images/analyte_spec-gui.png
    R doc/manual/source/_static/images/analyte_specmenu.png
    R doc/manual/source/_static/images/analyte_spectrum.png
    R doc/manual/source/_static/images/analytes.png
    R doc/manual/source/_static/images/associations.png
    R doc/manual/source/_static/images/astfem_sim.png
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    R doc/manual/source/_static/images/buffer_edit.png
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    A doc/manual/source/images/pline_dsig.png
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    A doc/manual/source/images/plot_controls.png
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    A doc/manual/source/images/process_crash.png
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    A doc/manual/source/images/rotor-add.png
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    A doc/manual/source/images/run_details.png
    A doc/manual/source/images/s20W_bar.png
    A doc/manual/source/images/sassoc.png
    A doc/manual/source/images/save_colormap.png
    A doc/manual/source/images/second_moment.png
    A doc/manual/source/images/select_edits.png
    A doc/manual/source/images/select_runs.png
    A doc/manual/source/images/sequence.png
    A doc/manual/source/images/set-zvalue.png
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    A doc/manual/source/images/solution_edit.png
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    A doc/manual/source/images/solution_settings.png
    A doc/manual/source/images/somo/somo_icon.png
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    A doc/manual/source/images/ultra.xpm
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    A doc/manual/source/images/us_edit.png
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    A doc/manual/source/images/us_equiltime.png
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    A doc/manual/source/images/us_project.png
    A doc/manual/source/images/us_project1.png
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    A doc/manual/source/images/us_solution1.png
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    A doc/manual/source/images/usfont-1.png
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    A doc/manual/source/images/vhw_combine-combo.png
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    A doc/manual/source/images/vhw_combine-selrun.png
    A doc/manual/source/images/vhw_combine.png
    A doc/manual/source/images/vhw_distribution.png
    A doc/manual/source/images/vhw_enh_groups.png
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    A doc/manual/source/images/xpn_viewer-loaded.png
    A doc/manual/source/images/xpn_viewer-saved.png
    A doc/manual/source/images/xpn_viewer.png
    A doc/manual/source/images/zvalue_eq.png
    M doc/manual/source/index.rst
    M doc/manual/source/manage_data.rst
    M doc/manual/source/model_editor.rst
    M doc/manual/source/mwl_spectra.rst
    M doc/manual/source/mwlr_viewer.rst
    M doc/manual/source/pcsa/index.rst
    M doc/manual/source/pcsa/pcsa.rst
    M doc/manual/source/pcsa/pcsa_adv.rst
    M doc/manual/source/pcsa/pcsa_analys.rst
    M doc/manual/source/pcsa/pcsa_mlines.rst
    M doc/manual/source/pcsa/pcsa_results.rst
    M doc/manual/source/pcsa/pcsa_rpscan.rst
    M doc/manual/source/predict1.rst
    M doc/manual/source/predict2.rst
    M doc/manual/source/pseudo3d.rst
    M doc/manual/source/register.rst
    M doc/manual/source/reporter.rst
    M doc/manual/source/requirements.txt
    M doc/manual/source/rmsd_query.rst
    M doc/manual/source/rotor.rst
    M doc/manual/source/rotor_calibration.rst
    M doc/manual/source/run_details.rst
    M doc/manual/source/sassoc.rst
    M doc/manual/source/second_moment.rst
    M doc/manual/source/simparams.rst
    M doc/manual/source/solutions/index.rst
    M doc/manual/source/solutions/solution_edit.rst
    M doc/manual/source/solutions/solution_new.rst
    M doc/manual/source/solutions/solution_select.rst
    M doc/manual/source/solutions/solution_settings.rst
    M doc/manual/source/temp.txt
    M doc/manual/source/time_derivative.rst
    M doc/manual/source/tmst_viewer.rst
    M doc/manual/source/us_buoyancy.rst
    M doc/manual/source/us_edit.rst
    M doc/manual/source/us_equiltime.rst
    M doc/manual/source/us_extinction.rst
    M doc/manual/source/us_fds_filemanager.rst
    M doc/manual/source/us_investigator.rst
    M doc/manual/source/us_modelmetrics.rst
    M doc/manual/source/us_project.rst
    M doc/manual/source/us_spectrum.rst
    M doc/manual/source/vhw_combine.rst
    M doc/manual/source/vhw_distrib_plot.rst
    M doc/manual/source/vhw_enhanced.rst
    M doc/manual/source/xpn_viewer.rst

  Log Message:
  -----------
  fix: change qthelp url to use manual instead of doc, use right project structure for images and update links


  Commit: dd6f8d6767fa98ae4f35d21e7e5411f7f1f1eb17
      https://github.com/ehb54/ultrascan3/commit/dd6f8d6767fa98ae4f35d21e7e5411f7f1f1eb17
  Author: Saeed <samo38:github>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  use Microsoft format, add overlap function


  Commit: e9f9ae1d960fb6e262803ee6b522247b68cf8894
      https://github.com/ehb54/ultrascan3/commit/e9f9ae1d960fb6e262803ee6b522247b68cf8894
  Author: Saeed <samo38:github>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_spectrodata.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M utils/libus_utils.pro
    M utils/us_crypto.cpp
    M utils/us_crypto.h

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_747


  Commit: b33c9b1cddd853e103542e10c4328830fc59e944
      https://github.com/ehb54/ultrascan3/commit/b33c9b1cddd853e103542e10c4328830fc59e944
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    A admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
    M admin/cmake/packaging/windows/WinDeploy.cmake
    A admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
    M doc/manual/CMakeLists.txt
    R doc/manual/StageAssistant.cmake
    M programs/us/CMakeLists.txt
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  mod: windows and macos qt assistant fix


  Commit: adb74a9f1e5a1e238c264228544137f56a4125b5
      https://github.com/ehb54/ultrascan3/commit/adb74a9f1e5a1e238c264228544137f56a4125b5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  fix: builddir set at the beginning


  Commit: cea2ea0e77baf6dbcc9097b3062ede36ca70f800
      https://github.com/ehb54/ultrascan3/commit/cea2ea0e77baf6dbcc9097b3062ede36ca70f800
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M doc/manual/CMakeLists.txt
    M scripts/build.ps1

  Log Message:
  -----------
  fix: windows path issues


  Commit: 99a443309500f6d44fde4d4ba640770dfadeec24
      https://github.com/ehb54/ultrascan3/commit/99a443309500f6d44fde4d4ba640770dfadeec24
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
    M doc/manual/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_helpdaemon/us_helpdaemon.cpp

  Log Message:
  -----------
  fix: windows missing dll


  Commit: 32f3fd93bf886595a3d9b9b0335a74cf5645913a
      https://github.com/ehb54/ultrascan3/commit/32f3fd93bf886595a3d9b9b0335a74cf5645913a
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Initialize `tsobj` with `TIMESTATE_TYPE::ORIGINAL` in `US_TimeState`.


  Commit: f6095ff611d0c2f9f6a04567e6f2a74535dd45fd
      https://github.com/ehb54/ultrascan3/commit/f6095ff611d0c2f9f6a04567e6f2a74535dd45fd
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Initialize `tsobj` with `TIMESTATE_TYPE::ORIGINAL` in `us_xpn_data`.


  Commit: 399ad6ee7636d4885c37adff02b723d1e6af48c9
      https://github.com/ehb54/ultrascan3/commit/399ad6ee7636d4885c37adff02b723d1e6af48c9
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    A admin/cmake/packaging/linux/LinuxDeploy.cmake
    A admin/cmake/packaging/linux/LinuxPkg.cmake
    M scripts/build.sh
    M utils/CMakeLists.txt

  Log Message:
  -----------
  add: linux cmake packaging


  Commit: c3215226c1e826bd7c620115a98fe3694cfe771e
      https://github.com/ehb54/ultrascan3/commit/c3215226c1e826bd7c620115a98fe3694cfe771e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.sh
    M utils/us_memory.cpp

  Log Message:
  -----------
  fix: cross platform page size


  Commit: 16d1f75e51f11ad87c8f18b11e0a8a2bb755ea44
      https://github.com/ehb54/ultrascan3/commit/16d1f75e51f11ad87c8f18b11e0a8a2bb755ea44
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M admin/cmake/packaging/linux/LinuxDeploy.cmake
    M scripts/build.ps1
    M scripts/build.sh
    M vcpkg.json

  Log Message:
  -----------
  fix: assistant on linux


  Commit: 4cff648f9ba827db6e67e9cedb1a93953e8a0f76
      https://github.com/ehb54/ultrascan3/commit/4cff648f9ba827db6e67e9cedb1a93953e8a0f76
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge pull request #384 from ehb54/lukas/timestate

Add TIMESTATE_TYPE and IMPORT_TYPE support with refactorings


  Commit: 5ab554ce68ae411774740695115c51b480df8c8a
      https://github.com/ehb54/ultrascan3/commit/5ab554ce68ae411774740695115c51b480df8c8a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  fix: vcpkg cache clear


  Commit: a8b6e9963d8ed447dc737af6b4e3b69c3894945f
      https://github.com/ehb54/ultrascan3/commit/a8b6e9963d8ed447dc737af6b4e3b69c3894945f
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  fix: vcpkg cache clear fix


  Commit: 19f656eb532b2218880402623455153763d66d50
      https://github.com/ehb54/ultrascan3/commit/19f656eb532b2218880402623455153763d66d50
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt

  Log Message:
  -----------
  fix: assistant now copied to bin on dev build


  Commit: 75e0dc23de6fbdd330b322115c640d973e916d02
      https://github.com/ehb54/ultrascan3/commit/75e0dc23de6fbdd330b322115c640d973e916d02
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt

  Log Message:
  -----------
  fix: assistant find update


  Commit: 57f162e692e1a548bb426454e7e768e6f68b1bc4
      https://github.com/ehb54/ultrascan3/commit/57f162e692e1a548bb426454e7e768e6f68b1bc4
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M programs/us/us.cpp

  Log Message:
  -----------
  fix: program path issue


  Commit: 4700970e14e8ef1bf44b3fe91efd8dbcd15ba544
      https://github.com/ehb54/ultrascan3/commit/4700970e14e8ef1bf44b3fe91efd8dbcd15ba544
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt

  Log Message:
  -----------
  fix: assistant not found


  Commit: 14d6c7e63b928fb3a73559fdafa9426502eda98c
      https://github.com/ehb54/ultrascan3/commit/14d6c7e63b928fb3a73559fdafa9426502eda98c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  fix: guard specific macos required tools


  Commit: 1c6be4ed0464373db7a5a1a6a780f17bc12dbcf5
      https://github.com/ehb54/ultrascan3/commit/1c6be4ed0464373db7a5a1a6a780f17bc12dbcf5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/linux/LinuxDeploy.cmake

  Log Message:
  -----------
  fix: missing library in pkg


  Commit: 216860fe02c9358e021e6a54b84aa2aa0e462a99
      https://github.com/ehb54/ultrascan3/commit/216860fe02c9358e021e6a54b84aa2aa0e462a99
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  fix: rcc error


  Commit: be038ad56e172897c3f18b8a1319fced62a708a0
      https://github.com/ehb54/ultrascan3/commit/be038ad56e172897c3f18b8a1319fced62a708a0
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M admin/cmake/packaging/linux/LinuxDeploy.cmake

  Log Message:
  -----------
  fix: update plugin directory


  Commit: 87c38bbe59db529cf02b7887c7bfe57ebc8e62da
      https://github.com/ehb54/ultrascan3/commit/87c38bbe59db529cf02b7887c7bfe57ebc8e62da
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/linux/LinuxDeploy.cmake

  Log Message:
  -----------
  add: readme


  Commit: 75648618e7f79fde451a6e9f2cf9023d8ed19140
      https://github.com/ehb54/ultrascan3/commit/75648618e7f79fde451a6e9f2cf9023d8ed19140
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h

  Log Message:
  -----------
  Add `load_timestate` methods to `US_ConvertScan` for handling time state from disk or database.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: fb3e874b186e61a3c3b696be002fa6134d681c4e
      https://github.com/ehb54/ultrascan3/commit/fb3e874b186e61a3c3b696be002fa6134d681c4e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h

  Log Message:
  -----------
  Merge pull request #386 from ehb54/lukas/us_pseudo_absorbance_timestate

us_pseudo_absorbance: transfer timestate


  Commit: f4323bc883bb8996c6e627bfb9b8295063ef176f
      https://github.com/ehb54/ultrascan3/commit/f4323bc883bb8996c6e627bfb9b8295063ef176f
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    M admin/cmake/GenerateVersion.cmake
    A admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcPkg.cmake
    A admin/cmake/packaging/macos/MacHpcDeploy.cmake
    A admin/cmake/packaging/macos/MacHpcPkg.cmake
    M programs/CMakeLists.txt
    M programs/us_mpi_analysis/2dsa_worker.cpp
    M programs/us_mpi_analysis/CMakeLists.txt
    M programs/us_mpi_analysis/pcsa_worker.cpp
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M scripts/build.sh

  Log Message:
  -----------
  fix: hpc build


  Commit: c515903ce23bec6067e47ed10ae663518f3de230
      https://github.com/ehb54/ultrascan3/commit/c515903ce23bec6067e47ed10ae663518f3de230
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  mod: use all cores with CI runners


  Commit: 7a8a012754d242634bca20501e1a1c94be231d6c
      https://github.com/ehb54/ultrascan3/commit/7a8a012754d242634bca20501e1a1c94be231d6c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M CMakePresets.json
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  fix: CI runners and hpc build


  Commit: 5277352caa620430b2bf8a580f9f10d43218d930
      https://github.com/ehb54/ultrascan3/commit/5277352caa620430b2bf8a580f9f10d43218d930
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  fix: not all dependencies found


  Commit: 60b1b16425fcda080aea3bfac20f1abad9e8bc32
      https://github.com/ehb54/ultrascan3/commit/60b1b16425fcda080aea3bfac20f1abad9e8bc32
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  fix: dependenies added


  Commit: 97cbb1a37275a33ef389b6fc7c2132ed4aaf52f4
      https://github.com/ehb54/ultrascan3/commit/97cbb1a37275a33ef389b6fc7c2132ed4aaf52f4
  Author: Saeed <samo38:github>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: large updates


  Commit: 15ea3878148a0987efd94cdedb07b9e3db570cfd
      https://github.com/ehb54/ultrascan3/commit/15ea3878148a0987efd94cdedb07b9e3db570cfd
  Author: Saeed <samo38:github>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  finish the fit function


  Commit: 1c6be507a58b5e30438f1565b772e544ee297d86
      https://github.com/ehb54/ultrascan3/commit/1c6be507a58b5e30438f1565b772e544ee297d86
  Author: Saeed <samo38:github>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  improve find_lambda function


  Commit: 3b29d9afdd3d29c7e33af7f0b989ccf1c642bc8c
      https://github.com/ehb54/ultrascan3/commit/3b29d9afdd3d29c7e33af7f0b989ccf1c642bc8c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    A scripts/bootstrap-deps.sh
    A scripts/bootstrap-macos.sh
    A scripts/bootstrap-windows.ps1
    A scripts/bootstrap.bat
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  fix: bootstrap deps


  Commit: 4975707ad3f001539ceeea7d716043118c23d07a
      https://github.com/ehb54/ultrascan3/commit/4975707ad3f001539ceeea7d716043118c23d07a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    A buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    M scripts/bootstrap-deps.sh

  Log Message:
  -----------
  fix: qt5 tools overlay


  Commit: e7e0613e5d7d234f835e4e9490416e0a7f5b9803
      https://github.com/ehb54/ultrascan3/commit/e7e0613e5d7d234f835e4e9490416e0a7f5b9803
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/bootstrap-deps.sh
    M scripts/bootstrap-macos.sh
    M scripts/build.sh
    A us-build

  Log Message:
  -----------
  add: bash wrapper


  Commit: b93b52b3acb64a650854a16f3983473f49becee9
      https://github.com/ehb54/ultrascan3/commit/b93b52b3acb64a650854a16f3983473f49becee9
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  mod: make profile positional for powershell


  Commit: dfec7b06f5af8e9ad31d7b4c682197a103bd5fb1
      https://github.com/ehb54/ultrascan3/commit/dfec7b06f5af8e9ad31d7b4c682197a103bd5fb1
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/bootstrap-windows.ps1
    M scripts/build.bat

  Log Message:
  -----------
  fix: convert -- pkg to - pkg for windows


  Commit: 2f98f90faa5b640815d571359919c09034a266c1
      https://github.com/ehb54/ultrascan3/commit/2f98f90faa5b640815d571359919c09034a266c1
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/bootstrap-windows.ps1

  Log Message:
  -----------
  fix: getwin


  Commit: 7249d6b2d508075f65d61b2643639c789db68d8e
      https://github.com/ehb54/ultrascan3/commit/7249d6b2d508075f65d61b2643639c789db68d8e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/bootstrap-windows.ps1

  Log Message:
  -----------
  fix: add chocolatey fallback for ci


  Commit: fd116b43987cda26a351438dcd70082a7c27ce17
      https://github.com/ehb54/ultrascan3/commit/fd116b43987cda26a351438dcd70082a7c27ce17
  Author: emre brookes <ehb54 at users.noreply.github.com>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


  Commit: 12ffcd24c66797e3e2d49303bce6232cc9c13d7c
      https://github.com/ehb54/ultrascan3/commit/12ffcd24c66797e3e2d49303bce6232cc9c13d7c
  Author: Saeed <github.com/samo38>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum: finilized the widget


  Commit: 21473e24e6f59d7d4edaba9f4ea29e1174a8f579
      https://github.com/ehb54/ultrascan3/commit/21473e24e6f59d7d4edaba9f4ea29e1174a8f579
  Author: Saeed <github.com/samo38>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp

  Log Message:
  -----------
  reformat some lines


  Commit: 55d03f81788bc585236ce0b642d89abc3293ad3a
      https://github.com/ehb54/ultrascan3/commit/55d03f81788bc585236ce0b642d89abc3293ad3a
  Author: Saeed <github.com/samo38>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M test/utils/test_us_time_state.cpp
    M utils/libus_utils.pro
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_748


  Commit: c3dd2ab6d66893c243fe40ba02010696a7b78d52
      https://github.com/ehb54/ultrascan3/commit/c3dd2ab6d66893c243fe40ba02010696a7b78d52
  Author: Saeed <github.com/samo38>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  reformat comments


  Commit: 74f3ba1cd3b6646dce0b4638c98b2707dff60f2e
      https://github.com/ehb54/ultrascan3/commit/74f3ba1cd3b6646dce0b4638c98b2707dff60f2e
  Author: Saeed <github.com/samo38>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  us_spectrum.h: removed us_math2.h


  Commit: 1dbeb030075307c5652d506be95a2186a0c22724
      https://github.com/ehb54/ultrascan3/commit/1dbeb030075307c5652d506be95a2186a0c22724
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h

  Log Message:
  -----------
  Refactor `US_Plot`: enhance double-click interactions, add zoom configuration, and improve curve/axis management with event filter.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 72c834e6d8fa6d6cd9d3b1d1eb90cc7410670c01
      https://github.com/ehb54/ultrascan3/commit/72c834e6d8fa6d6cd9d3b1d1eb90cc7410670c01
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  Add "Click Exclusion Mode" in `US_Edit` with hover tooltips and enhanced scan selection functionality.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: ced5c0cf9086f5a21a308bcb214f061a75e89aab
      https://github.com/ehb54/ultrascan3/commit/ced5c0cf9086f5a21a308bcb214f061a75e89aab
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  Add null pointer check for `plot->getZoomer()` in `US_Edit` to prevent potential crashes.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: b5607cb3d6296c0e48283cc6dd1a804c051dd8d9
      https://github.com/ehb54/ultrascan3/commit/b5607cb3d6296c0e48283cc6dd1a804c051dd8d9
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  Remove redundant state machine changes in "Click Exclusion Mode" toggle of `US_Edit`.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: d548b54d3bbac75ffbf270b99643e5cf26257968
      https://github.com/ehb54/ultrascan3/commit/d548b54d3bbac75ffbf270b99643e5cf26257968
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.h

  Log Message:
  -----------
  Initialize members in `CurveDistance` struct with default values to improve stability and prevent undefined behavior.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: f3e23f8189d66b9641b37fb2c54b38119d2ef2ec
      https://github.com/ehb54/ultrascan3/commit/f3e23f8189d66b9641b37fb2c54b38119d2ef2ec
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp

  Log Message:
  -----------
  Refactor `US_Plot`: add new double-click connections, refactor axis configuration, and enhance zoomer signal handling.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: d73cc2971816653d17d72f1785291c00b96b0c8b
      https://github.com/ehb54/ultrascan3/commit/d73cc2971816653d17d72f1785291c00b96b0c8b
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp

  Log Message:
  -----------
  Update `US_Plot::createZoomer` to adjust `US_Zoomer` constructor arguments for axis configuration.

Signed-off-by: doluk <69309597+doluk at users.noreply.github.com>


  Commit: 45140eeddd64e45d6b5c87061f79c9aefc3ce25e
      https://github.com/ehb54/ultrascan3/commit/45140eeddd64e45d6b5c87061f79c9aefc3ce25e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    M programs/us/revision.sh
    M scripts/build.ps1

  Log Message:
  -----------
  fix: windows CI vcpkg cache usage


  Commit: 1ec6ec52d283b6c710abe095ebcad82139a64ae3
      https://github.com/ehb54/ultrascan3/commit/1ec6ec52d283b6c710abe095ebcad82139a64ae3
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M CMakePresets.json
    M scripts/build.sh

  Log Message:
  -----------
  add: macos intel build


  Commit: 39ad33c5c781b0f007822456803df7d591795fe7
      https://github.com/ehb54/ultrascan3/commit/39ad33c5c781b0f007822456803df7d591795fe7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  fix: vcpkg CI handling


  Commit: 7fad3a4dfaa187ad4eb94554cedbe3ec6cf56773
      https://github.com/ehb54/ultrascan3/commit/7fad3a4dfaa187ad4eb94554cedbe3ec6cf56773
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_mpi_analysis/revision.sh

  Log Message:
  -----------
  fix: change revision to git_revision to be consistent with other programs


  Commit: b4417a6bfd0cfcc840668d21e88718e957734e47
      https://github.com/ehb54/ultrascan3/commit/b4417a6bfd0cfcc840668d21e88718e957734e47
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M test/utils/test_us_time_state.cpp
    M utils/libus_utils.pro
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: f0c8ede548bfb3a6f2380059dd1aacf09c6a7883
      https://github.com/ehb54/ultrascan3/commit/f0c8ede548bfb3a6f2380059dd1aacf09c6a7883
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/bootstrap-macos.sh

  Log Message:
  -----------
  fix: add missing dependencies


  Commit: 09eeb4bec49931c943f732f024f1166b882c3e3a
      https://github.com/ehb54/ultrascan3/commit/09eeb4bec49931c943f732f024f1166b882c3e3a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M test/utils/test_us_time_state.cpp
    M utils/libus_utils.pro
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2


  Commit: 51ba58286eaaa41af877ff9330d19560633e1c16
      https://github.com/ehb54/ultrascan3/commit/51ba58286eaaa41af877ff9330d19560633e1c16
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/bootstrap-macos.sh

  Log Message:
  -----------
  fix: add missing dependencies


  Commit: 21a5f4a7ad52a67040b9426ed30a082038813498
      https://github.com/ehb54/ultrascan3/commit/21a5f4a7ad52a67040b9426ed30a082038813498
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: reduce linux disk space usage


  Commit: 12b7e30a17e5c86f8e9d4960f7e8da86d67b3b4f
      https://github.com/ehb54/ultrascan3/commit/12b7e30a17e5c86f8e9d4960f7e8da86d67b3b4f
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: removed vcpkg folder creation


  Commit: ece15a944fb55077213717e00f084056004367a7
      https://github.com/ehb54/ultrascan3/commit/ece15a944fb55077213717e00f084056004367a7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinDeploy.cmake

  Log Message:
  -----------
  mod: change qt warnings an error to force build to stop


  Commit: 466789a804273570c11c7cb44bf28924caa363df
      https://github.com/ehb54/ultrascan3/commit/466789a804273570c11c7cb44bf28924caa363df
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: 80474c759ff865d72c8c6043ba64d38bf98e1e15
      https://github.com/ehb54/ultrascan3/commit/80474c759ff865d72c8c6043ba64d38bf98e1e15
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: reduce to 2 cores for ubuntu


  Commit: ae52535acb54fede063aaaefd18be0c4ec92474b
      https://github.com/ehb54/ultrascan3/commit/ae52535acb54fede063aaaefd18be0c4ec92474b
  Author: Saeed <samo38:github>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_747


  Commit: 2e81015b2e85d24c6d0619f563c9053fcb5de9e1
      https://github.com/ehb54/ultrascan3/commit/2e81015b2e85d24c6d0619f563c9053fcb5de9e1
  Author: Saeed Mortezazadeh <49119048+samo38 at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge pull request #373 from samo38/ticket_747

Ticket 747: add US_Help to us_legacy_converter, us_query_rmsd, us_extinction, us_spectrum, us_ramp


  Commit: e9f0952dea5d8bb82a866082b546997a3e457ec4
      https://github.com/ehb54/ultrascan3/commit/e9f0952dea5d8bb82a866082b546997a3e457ec4
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


  Commit: c4af75ba6a8e299d819034f87528f9d6997e469f
      https://github.com/ehb54/ultrascan3/commit/c4af75ba6a8e299d819034f87528f9d6997e469f
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 0f81d3f0d1fb567b1e570ed90147a17f49e57c1f
      https://github.com/ehb54/ultrascan3/commit/0f81d3f0d1fb567b1e570ed90147a17f49e57c1f
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    M admin/cmake/packaging/windows/WinDeploy.cmake
    R scripts/bootstrap-deps.sh
    A scripts/bootstrap-linux.sh
    M scripts/bootstrap-macos.sh
    M scripts/build.sh
    M utils/CMakeLists.txt
    M vcpkg.json

  Log Message:
  -----------
  mod: move checks to bootstrap


  Commit: 4ff50388194860753c3e8bc4d697e944ce0f1641
      https://github.com/ehb54/ultrascan3/commit/4ff50388194860753c3e8bc4d697e944ce0f1641
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2


  Commit: 73d3d9961c360d61b70b25d54f762c7f7435325e
      https://github.com/ehb54/ultrascan3/commit/73d3d9961c360d61b70b25d54f762c7f7435325e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: a54f8e2bc39c26f3e2f95dae43da15eb743e4d25
      https://github.com/ehb54/ultrascan3/commit/a54f8e2bc39c26f3e2f95dae43da15eb743e4d25
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: 82349a16124679984a45c562feb3f2583dbdb531
      https://github.com/ehb54/ultrascan3/commit/82349a16124679984a45c562feb3f2583dbdb531
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: add platform safe check


  Commit: 8fbf539a26017728861e732dc1d18eb23eb5767b
      https://github.com/ehb54/ultrascan3/commit/8fbf539a26017728861e732dc1d18eb23eb5767b
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt

  Log Message:
  -----------
  Include OpenSSL applink for MSVC on Windows

Add OpenSSL applink shim for MSVC on Windows.


  Commit: 062c3d2366cc1939df31abf0a90ee9aa81093ffe
      https://github.com/ehb54/ultrascan3/commit/062c3d2366cc1939df31abf0a90ee9aa81093ffe
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M utils/us_timer.h

  Log Message:
  -----------
  Replace 'using namespace std' with std:: in us_timer.h

Prevent windows specific type definition conflicts caused by using namespace std;


  Commit: d285dea10ab7bcc93c14b4f74e336121a728f25a
      https://github.com/ehb54/ultrascan3/commit/d285dea10ab7bcc93c14b4f74e336121a728f25a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M vcpkg.json

  Log Message:
  -----------
  Update builtin-baseline version in vcpkg.json


  Commit: 2528e2d95ef721c90585880700173e01e85eaa41
      https://github.com/ehb54/ultrascan3/commit/2528e2d95ef721c90585880700173e01e85eaa41
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  Enhance CMakeLists for Qt6 post-build handling

Added post-build commands for Qt6 integration in Debug and Release modes.


  Commit: 52e46a6c204f209f206de1b17187485510b50872
      https://github.com/ehb54/ultrascan3/commit/52e46a6c204f209f206de1b17187485510b50872
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  Refactor post-build commands for Qt6 on Windows


  Commit: 428287d058712bdf7736b86456a19b29730bec50
      https://github.com/ehb54/ultrascan3/commit/428287d058712bdf7736b86456a19b29730bec50
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M utils/us_timer.h

  Log Message:
  -----------
  Add map include to us_timer.h


  Commit: b1e9456925a223045bd903ef52c4096e0e3675dc
      https://github.com/ehb54/ultrascan3/commit/b1e9456925a223045bd903ef52c4096e0e3675dc
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt

  Log Message:
  -----------
  Add OpenSSL applink condition for MSVC on Windows


  Commit: 844f0378f9d93d9976788b58bd853ff5baafd865
      https://github.com/ehb54/ultrascan3/commit/844f0378f9d93d9976788b58bd853ff5baafd865
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: ef226636cf28fac5f0b62c8cc7535c518336f7cd
      https://github.com/ehb54/ultrascan3/commit/ef226636cf28fac5f0b62c8cc7535c518336f7cd
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [1]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: 008ab8725529f70ff36e4845202c893ddb0e4213
      https://github.com/ehb54/ultrascan3/commit/008ab8725529f70ff36e4845202c893ddb0e4213
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [2]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: cee06353e7b931a3f580d1bffbeb9f2326d63532
      https://github.com/ehb54/ultrascan3/commit/cee06353e7b931a3f580d1bffbeb9f2326d63532
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [3]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: d9676faa3a7a6a92c56faa175bcd24c240a39b0d
      https://github.com/ehb54/ultrascan3/commit/d9676faa3a7a6a92c56faa175bcd24c240a39b0d
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge pull request #389 from ehb54/lukas/qt6-msvc

CMake Qt6 windows compile MSVC


  Commit: 5c16c03541cbbc99e4d1d5e6304244b7c5cd261d
      https://github.com/ehb54/ultrascan3/commit/5c16c03541cbbc99e4d1d5e6304244b7c5cd261d
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: ffaae2039c0f2f0337ba9cde3e4667ade9f04c5c
      https://github.com/ehb54/ultrascan3/commit/ffaae2039c0f2f0337ba9cde3e4667ade9f04c5c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: 5d9bc472d7f67b7cc2de87cfa943d8db9b3bc1c5
      https://github.com/ehb54/ultrascan3/commit/5d9bc472d7f67b7cc2de87cfa943d8db9b3bc1c5
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp

  Log Message:
  -----------
  [4]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: f403e0ca772e609f1f064e09815e424e676e96ba
      https://github.com/ehb54/ultrascan3/commit/f403e0ca772e609f1f064e09815e424e676e96ba
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Fix methodChanged to suppress signal and reset checkboxes


  Commit: 4c67ee8e4cb27a2a60a41177608c3cf2565db76a
      https://github.com/ehb54/ultrascan3/commit/4c67ee8e4cb27a2a60a41177608c3cf2565db76a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Remove redundant assignment to tdata

Prevent memory corruption


  Commit: 6437b90d6e57f06e5aafbea01753415627877e6b
      https://github.com/ehb54/ultrascan3/commit/6437b90d6e57f06e5aafbea01753415627877e6b
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp

  Log Message:
  -----------
  Update condition for vbar20 comparison


  Commit: 4c73a0c1ae974bfad85180a15588c4203f772bae
      https://github.com/ehb54/ultrascan3/commit/4c73a0c1ae974bfad85180a15588c4203f772bae
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Fix typo in comment and streamline methodChanged


  Commit: 24cd6bc5d78c14e84c05915d5b043c7628d0c084
      https://github.com/ehb54/ultrascan3/commit/24cd6bc5d78c14e84c05915d5b043c7628d0c084
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge pull request #391 from ehb54/lukas/us_mwl_spectra_3dplot_reversey

Remove redundant assignment to tdata


  Commit: cd22d118497ba373e73cde824f09464646c78f6e
      https://github.com/ehb54/ultrascan3/commit/cd22d118497ba373e73cde824f09464646c78f6e
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_analyte_protein_vbar_no_sequence


  Commit: a92e13702d0a02ed4fddd7be57df0c9ec134c449
      https://github.com/ehb54/ultrascan3/commit/a92e13702d0a02ed4fddd7be57df0c9ec134c449
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp

  Log Message:
  -----------
  Merge pull request #392 from ehb54/lukas/us_analyte_protein_vbar_no_sequence

Update condition for vbar20 comparison


  Commit: 648e2c616df93b8cb3f16672c3315e44e99a1cdd
      https://github.com/ehb54/ultrascan3/commit/648e2c616df93b8cb3f16672c3315e44e99a1cdd
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_ddist_combine_all_checkbox


  Commit: 524fb756825b453194c34611c2ce7624e62f7f53
      https://github.com/ehb54/ultrascan3/commit/524fb756825b453194c34611c2ce7624e62f7f53
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: 45a5699260fb89e53971aee6bbf0b5f13d1b40fa
      https://github.com/ehb54/ultrascan3/commit/45a5699260fb89e53971aee6bbf0b5f13d1b40fa
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/masterpassword_change


  Commit: 8a2d982f8e8906a85bfe363487622d59a1ff361e
      https://github.com/ehb54/ultrascan3/commit/8a2d982f8e8906a85bfe363487622d59a1ff361e
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 6d361b64fc8f314fe8399f028d2c79ef9d0e417b
      https://github.com/ehb54/ultrascan3/commit/6d361b64fc8f314fe8399f028d2c79ef9d0e417b
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: clean after build set


  Commit: 5b81b9c41fc973670663047afba591d6edaa898c
      https://github.com/ehb54/ultrascan3/commit/5b81b9c41fc973670663047afba591d6edaa898c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinDeploy.cmake

  Log Message:
  -----------
  fix: packaging


  Commit: 10e620037c83dddc66d518ab28e33eb36c3e3c17
      https://github.com/ehb54/ultrascan3/commit/10e620037c83dddc66d518ab28e33eb36c3e3c17
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


  Commit: 07c6d8042bd25e59ca20ca5bd16ed3b6ff8b321c
      https://github.com/ehb54/ultrascan3/commit/07c6d8042bd25e59ca20ca5bd16ed3b6ff8b321c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge pull request #385 from ehb54/lukas/masterpassword_change

Refactor password re-encryption logic


  Commit: ed3ecfca235f46d9da27159afb01288bbcb42cd4
      https://github.com/ehb54/ultrascan3/commit/ed3ecfca235f46d9da27159afb01288bbcb42cd4
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_ddist_combine_all_checkbox


  Commit: 3e5bea2d6f8973b1443f2db3438bbbcfe128378f
      https://github.com/ehb54/ultrascan3/commit/3e5bea2d6f8973b1443f2db3438bbbcfe128378f
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: 3afad49842a3c53daabf741428b683cb8e86837c
      https://github.com/ehb54/ultrascan3/commit/3afad49842a3c53daabf741428b683cb8e86837c
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: afdf12344c5555d4130fa310bf352f2c27bbdadc
      https://github.com/ehb54/ultrascan3/commit/afdf12344c5555d4130fa310bf352f2c27bbdadc
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    A buildsys/vcpkg/overlay-ports/qttools.disable/devendor-litehtml.patch
    A buildsys/vcpkg/overlay-ports/qttools.disable/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools.disable/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qttools.disable/windeployqt.debug.bat
    R buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
    R buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
    R buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
    R buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat

  Log Message:
  -----------
  test remove qttools overlay


  Commit: 691c2112f822e5f82f6f153dbb8d568663367a2c
      https://github.com/ehb54/ultrascan3/commit/691c2112f822e5f82f6f153dbb8d568663367a2c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2


  Commit: 447c06a32ef5ade7850e1391500673c408a9c5e4
      https://github.com/ehb54/ultrascan3/commit/447c06a32ef5ade7850e1391500673c408a9c5e4
  Author: Doluk <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h

  Log Message:
  -----------
  Refactor `US_Zoomer` and `US_DoubleClickEventFilter`: enhance zoom base initialization, update rubber band/tracker pen settings, and improve double-click handling for axes and curves.


  Commit: a73d1f0d1b712c4345cbd63219466ef87ccabfdb
      https://github.com/ehb54/ultrascan3/commit/a73d1f0d1b712c4345cbd63219466ef87ccabfdb
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [5]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: 28dafe4f6fe91d2a19d25a13dca2a9700c8524c1
      https://github.com/ehb54/ultrascan3/commit/28dafe4f6fe91d2a19d25a13dca2a9700c8524c1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  [6]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...


  Commit: 88e5262aa244a552236f70eb1b00274e245d2f90
      https://github.com/ehb54/ultrascan3/commit/88e5262aa244a552236f70eb1b00274e245d2f90
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [6a]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...ush


  Commit: 5e19ef3b84e9f0542544c16ad99f1909133b6197
      https://github.com/ehb54/ultrascan3/commit/5e19ef3b84e9f0542544c16ad99f1909133b6197
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [6b]GMP: Report -- test inclusion of the replica groups consisting of 1 channel only into Report...ush


  Commit: cfd2bf22ab1f023d0f1bf0c3677f13218d99b4e3
      https://github.com/ehb54/ultrascan3/commit/cfd2bf22ab1f023d0f1bf0c3677f13218d99b4e3
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_config/us_admin.cpp
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge pull request #393 from ehb54/main

Merge main into alexey-dev-issue785


  Commit: 5304d85db5ed89082fe2cf86d0fd9f3f3fbd65c3
      https://github.com/ehb54/ultrascan3/commit/5304d85db5ed89082fe2cf86d0fd9f3f3fbd65c3
  Author: Saeed <github.com/samo38>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M gui/us_plot3d.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_config/us_admin.cpp
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  merge upstream/main , resolved conflicts


  Commit: 5fbfc3b610b9edaa535c2cdde484daba5a1f6d23
      https://github.com/ehb54/ultrascan3/commit/5fbfc3b610b9edaa535c2cdde484daba5a1f6d23
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinDeploy.cmake
    A buildsys/vcpkg/overlay-ports/qt5-tools/fix-pkgconfig-qt5uiplugin-not-found.patch
    A buildsys/vcpkg/overlay-ports/qt5-tools/fix-spawnvp-argv.patch
    A buildsys/vcpkg/overlay-ports/qt5-tools/libclang.patch
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    M buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    M scripts/bootstrap-windows.ps1
    M scripts/build.ps1

  Log Message:
  -----------
  fix: restore patch for qt5-tools


  Commit: ee9314b8a10555d579148933ce5fb59dc77f25a5
      https://github.com/ehb54/ultrascan3/commit/ee9314b8a10555d579148933ce5fb59dc77f25a5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinDeploy.cmake
    M scripts/bootstrap-windows.ps1

  Log Message:
  -----------
  fix: nasm check and add supporting dlls to installation


  Commit: f9860bd8d1ac6f5c5c4a4b0dd90e3cb7f09bd131
      https://github.com/ehb54/ultrascan3/commit/f9860bd8d1ac6f5c5c4a4b0dd90e3cb7f09bd131
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M scripts/build.ps1
    M vcpkg.json

  Log Message:
  -----------
  mod: check path length is too long on qt 5


  Commit: 4365eb02a1c29a38a42fe848da39deab69e67715
      https://github.com/ehb54/ultrascan3/commit/4365eb02a1c29a38a42fe848da39deab69e67715
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    R buildsys/vcpkg/overlay-ports/qttools.disable/devendor-litehtml.patch
    R buildsys/vcpkg/overlay-ports/qttools.disable/portfile.cmake
    R buildsys/vcpkg/overlay-ports/qttools.disable/vcpkg.json
    R buildsys/vcpkg/overlay-ports/qttools.disable/windeployqt.debug.bat

  Log Message:
  -----------
  del: remove unused overlay


  Commit: c9f9553d1be9cca2abdbef64d64daa2688c9b977
      https://github.com/ehb54/ultrascan3/commit/c9f9553d1be9cca2abdbef64d64daa2688c9b977
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Merge pull request #390 from ehb54/lukas/us_ddist_combine_all_checkbox

Change behavior of all button in combine discrete distributions


  Commit: 50ee53da3e470361bd6a9fa94454856cc21660a1
      https://github.com/ehb54/ultrascan3/commit/50ee53da3e470361bd6a9fa94454856cc21660a1
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_ddist_combine/us_ddist_combine.cpp

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_edit_scan_exclude_click


  Commit: c6c251770d12273ef8519ef12212ecaf90df9c8a
      https://github.com/ehb54/ultrascan3/commit/c6c251770d12273ef8519ef12212ecaf90df9c8a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  Merge pull request #388 from ehb54/lukas/us_edit_scan_exclude_click

Refactor US_Plot interactions and enhance US_Edit functionality


  Commit: efe1a2ba8b277a19ae50d1262c14239f9f9dac81
      https://github.com/ehb54/ultrascan3/commit/efe1a2ba8b277a19ae50d1262c14239f9f9dac81
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M scripts/bootstrap-linux.sh

  Log Message:
  -----------
  add: missing linux packages libsm-dev libice-dev


  Commit: 84f1faaa0819a233d3023bd3ae0d75d2ccaf6430
      https://github.com/ehb54/ultrascan3/commit/84f1faaa0819a233d3023bd3ae0d75d2ccaf6430
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    A buildsys/vcpkg/overlay-ports/mpg123/fix-arm64-no-fpu-neon64.patch
    A buildsys/vcpkg/overlay-ports/mpg123/have-fpu.diff
    A buildsys/vcpkg/overlay-ports/mpg123/pkgconfig.diff
    A buildsys/vcpkg/overlay-ports/mpg123/portfile.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/vcpkg.json

  Log Message:
  -----------
  add: port overlay for linux arm fix


  Commit: aae4ac3a14f0a1c0ce391cedb1844ac845045869
      https://github.com/ehb54/ultrascan3/commit/aae4ac3a14f0a1c0ce391cedb1844ac845045869
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Change encryption finalization to decryption


  Commit: 9454cb777d85cb65835ea5eb51fc05bc18d58e78
      https://github.com/ehb54/ultrascan3/commit/9454cb777d85cb65835ea5eb51fc05bc18d58e78
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp

  Log Message:
  -----------
  Implement EncryptDecryptTest for US_Crypto

Add unit test for encryption and decryption consistency


  Commit: 2c028de85502d48e60a380c61b93dc7a7e2f7727
      https://github.com/ehb54/ultrascan3/commit/2c028de85502d48e60a380c61b93dc7a7e2f7727
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp

  Log Message:
  -----------
  Add unit test for encryption with different passwords


  Commit: ac1ca1f8183d056ed7e98541ac5ac52d725b33f8
      https://github.com/ehb54/ultrascan3/commit/ac1ca1f8183d056ed7e98541ac5ac52d725b33f8
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h

  Log Message:
  -----------
  GMP-ABDE: Ranges & Upload check for ext. profiles -- while situations when extinction profiles for one or more analytes do not cover all wvls in Ranges are caught, the message is misleading and does not provide a hint for inability to proceed; capture exact message at the stage of living 7. Ranges panel & pass to Upload tab before enabling run submission...


  Commit: 8ba4b05b7f14586d7e527145ba6c464fd3dc3e4d
      https://github.com/ehb54/ultrascan3/commit/8ba4b05b7f14586d7e527145ba6c464fd3dc3e4d
  Author: Saeed <github.com/samo38>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  add wavelength limit picker, add checkbox for db loadings


  Commit: efd337809634d3a364046f3a040862ce1b2a81f4
      https://github.com/ehb54/ultrascan3/commit/efd337809634d3a364046f3a040862ce1b2a81f4
  Author: Saeed <github.com/samo38>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_748


  Commit: b94ce34c55dd06ddc8ccfbb1239c262fe1c9cd52
      https://github.com/ehb54/ultrascan3/commit/b94ce34c55dd06ddc8ccfbb1239c262fe1c9cd52
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge pull request #395 from ehb54/lukas/us_crypto_decrypt_fix

Change encryption finalization to decryption


  Commit: d6c8bb86eb4e77d526599971c15a35328a4927d8
      https://github.com/ehb54/ultrascan3/commit/d6c8bb86eb4e77d526599971c15a35328a4927d8
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue791


  Commit: e163509a00c5876ac83d78f14c8a969dae251b75
      https://github.com/ehb54/ultrascan3/commit/e163509a00c5876ac83d78f14c8a969dae251b75
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue785


  Commit: 501adedca88f7d331c3a70d62c04cc4992f86979
      https://github.com/ehb54/ultrascan3/commit/501adedca88f7d331c3a70d62c04cc4992f86979
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/macos/MacDeploy.cmake
    M admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
    A admin/cmake/packaging/macos/StageAssistantDev.cmake
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
    A buildsys/vcpkg/overlay-ports/qttools/port.data.cmake
    A buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat
    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
    M programs/us/CMakeLists.txt
    M scripts/build.sh

  Log Message:
  -----------
  add: overlay port for qttools


  Commit: e1e93704ad79bf8d43c6c4eba74a4c90b1dc1fdf
      https://github.com/ehb54/ultrascan3/commit/e1e93704ad79bf8d43c6c4eba74a4c90b1dc1fdf
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: ce7a1d14ace3b2d645b17aeab7be4f3fb881ff7b
      https://github.com/ehb54/ultrascan3/commit/ce7a1d14ace3b2d645b17aeab7be4f3fb881ff7b
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  Merge pull request #394 from ehb54/alexey-dev-issue785

Alexey dev issue785: Show sigle-channel-replica group info in the Average over Replicas Section of the Report


  Commit: e6579802fd032cde1c91863e8af0b2885d936062
      https://github.com/ehb54/ultrascan3/commit/e6579802fd032cde1c91863e8af0b2885d936062
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue791


  Commit: d0eb3d3a8f27a33f4dc6b857f1a2ddcb6c52af5d
      https://github.com/ehb54/ultrascan3/commit/d0eb3d3a8f27a33f4dc6b857f1a2ddcb6c52af5d
  Author: Saeed <github.com/samo38>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'upstream/main' into ticket_748


  Commit: 563c55a8a0ccb209a43dc363ec87842b0f4d6489
      https://github.com/ehb54/ultrascan3/commit/563c55a8a0ccb209a43dc363ec87842b0f4d6489
  Author: Saeed Mortezazadeh <49119048+samo38 at users.noreply.github.com>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge pull request #387 from samo38/ticket_748

Ticket 748: Enhance Spectrum Decomposition GUI and functionality


  Commit: 3fef021d4fad55bc1bb07521af0bff3e7ac12095
      https://github.com/ehb54/ultrascan3/commit/3fef021d4fad55bc1bb07521af0bff3e7ac12095
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into alexey-dev-issue791


  Commit: cb192562f44149651f3157090d395a05f79da39e
      https://github.com/ehb54/ultrascan3/commit/cb192562f44149651f3157090d395a05f79da39e
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-18 (Wed, 18 Mar 2026)

  Changed paths:
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h

  Log Message:
  -----------
  Merge pull request #396 from ehb54/alexey-dev-issue791

GMP-ABDE: Ranges & Upload check for ext. profiles -- while situations?


  Commit: 81695e7ad3f97f7cd46fe42d8148a8911fc3fc43
      https://github.com/ehb54/ultrascan3/commit/81695e7ad3f97f7cd46fe42d8148a8911fc3fc43
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: bed8960f5d491db022be512a82491fc248abcbf9
      https://github.com/ehb54/ultrascan3/commit/bed8960f5d491db022be512a82491fc248abcbf9
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M doc/manual/CMakeLists.txt
    M doc/manual/README.md
    M doc/manual/source/conf.py
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  mod: PR comments addressed


  Commit: 5205cb5542bd366b63909189ac9691c6473fc071
      https://github.com/ehb54/ultrascan3/commit/5205cb5542bd366b63909189ac9691c6473fc071
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2


  Commit: 76e772666ba74f76a6d525444b9c0cd8f9d01e76
      https://github.com/ehb54/ultrascan3/commit/76e772666ba74f76a6d525444b9c0cd8f9d01e76
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M doc/manual/CMakeLists.txt

  Log Message:
  -----------
  fix: skip subdirectory doc/manual if hpc or documentation off


  Commit: 05b438d52cffda88429e278cae66fead57b193ec
      https://github.com/ehb54/ultrascan3/commit/05b438d52cffda88429e278cae66fead57b193ec
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M CMakePresets.json
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    R doc/manual/source/conf.py-orig.081225
    M gui/CMakeLists.txt
    M programs/us_helpdaemon/us_helpdaemon.cpp

  Log Message:
  -----------
  fix: Reformat CMakePresets.json to multi-line style; add US3_NO_DB=ON to all HPC
     presets; fix GLU elseif(UNIX) branch; drop dead Windows assistant path check.


  Commit: 21882cd1fd05a489de72b721e1e4bebaa8fb9ac5
      https://github.com/ehb54/ultrascan3/commit/21882cd1fd05a489de72b721e1e4bebaa8fb9ac5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M doc/manual/CMakeLists.txt
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  fix: pr comments


  Commit: 39a94736afc6e6b1450549833138c494fc1ff36b
      https://github.com/ehb54/ultrascan3/commit/39a94736afc6e6b1450549833138c494fc1ff36b
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M doc/manual/Makefile

  Log Message:
  -----------
  fix: make all moved to top


  Commit: 55ad77b5ea4726efff74c2e3da2b763af7b12070
      https://github.com/ehb54/ultrascan3/commit/55ad77b5ea4726efff74c2e3da2b763af7b12070
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    M doc/manual/CMakeLists.txt

  Log Message:
  -----------
  fix: presets


  Commit: 8aeda75b69a9c2d9df2af035ea7265bb93bdacef
      https://github.com/ehb54/ultrascan3/commit/8aeda75b69a9c2d9df2af035ea7265bb93bdacef
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-21 (Sat, 21 Mar 2026)

  Changed paths:
    A admin/cmake/README.md
    A admin/cmake/packaging/README.md
    A pkg/macos/README.md

  Log Message:
  -----------
  mod: readmes


  Commit: 81c3a3a5d2a743645b19098027b58ecdc429d634
      https://github.com/ehb54/ultrascan3/commit/81c3a3a5d2a743645b19098027b58ecdc429d634
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-22 (Sun, 22 Mar 2026)

  Changed paths:
    R doc/manual/source/2dsa/2dsa_adv.rst
    R doc/manual/source/2dsa/2dsa_analys.rst
    R doc/manual/source/2dsa/2dsa_main.rst
    R doc/manual/source/2dsa/index.rst
    R doc/manual/source/3d_plot.rst
    R doc/manual/source/analyte/analyte_edit.rst
    R doc/manual/source/analyte/analyte_new.rst
    R doc/manual/source/analyte/analyte_select.rst
    R doc/manual/source/analyte/analyte_settings.rst
    R doc/manual/source/analyte/index.rst
    R doc/manual/source/associations.rst
    R doc/manual/source/astfem_sim.rst
    R doc/manual/source/beckman_openauc.rst
    R doc/manual/source/buffer/buffer_edit.rst
    R doc/manual/source/buffer/buffer_new.rst
    R doc/manual/source/buffer/buffer_select.rst
    R doc/manual/source/buffer/buffer_settings.rst
    R doc/manual/source/buffer/index.rst
    R doc/manual/source/buoyancy_editor.rst
    R doc/manual/source/colorgradient.rst
    R doc/manual/source/combine_models.rst
    R doc/manual/source/common_dialogs.rst
    R doc/manual/source/components.rst
    R doc/manual/source/config.rst
    R doc/manual/source/convert.rst
    R doc/manual/source/ddist_combine.rst
    R doc/manual/source/dens_match.rst
    R doc/manual/source/dmga_init.rst
    R doc/manual/source/dmga_init_constr.rst
    R doc/manual/source/experiment/cells.rst
    R doc/manual/source/experiment/general.rst
    R doc/manual/source/experiment/import.rst
    R doc/manual/source/experiment/index.rst
    R doc/manual/source/experiment/liveupdate.rst
    R doc/manual/source/experiment/optics.rst
    R doc/manual/source/experiment/range.rst
    R doc/manual/source/experiment/rotor.rst
    R doc/manual/source/experiment/solutions.rst
    R doc/manual/source/experiment/speeds.rst
    R doc/manual/source/experiment/submit.rst
    R doc/manual/source/export_legacy.rst
    R doc/manual/source/fe_match/fe_match_adv.rst
    R doc/manual/source/fe_match/fe_match_main.rst
    R doc/manual/source/fe_match/fe_match_simulate.rst
    R doc/manual/source/fe_match/index.rst
    R doc/manual/source/fit_meniscus.rst
    R doc/manual/source/ga_initialize.rst
    R doc/manual/source/gmp/gmp.rst
    R doc/manual/source/gmp/gmp_audit_trail.rst
    R doc/manual/source/gmp/gmp_automation.rst
    R doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst
    R doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst
    R doc/manual/source/gmp/gmp_data_acquisition/index.rst
    R doc/manual/source/gmp/gmp_protocol_development.rst
    R doc/manual/source/gmp/gmp_report_generator.rst
    R doc/manual/source/gmp/gmp_signature.rst
    R doc/manual/source/gmp/index.rst
    R doc/manual/source/grid_editor.rst
    R doc/manual/source/idist_combine.rst
    R doc/manual/source/images/2dsa_3dplot.png
    R doc/manual/source/images/2dsa_advan.png
    R doc/manual/source/images/2dsa_analvv.png
    R doc/manual/source/images/2dsa_analys.png
    R doc/manual/source/images/2dsa_main-c.png
    R doc/manual/source/images/2dsa_main-o.png
    R doc/manual/source/images/2dsa_resplot.png
    R doc/manual/source/images/D20W_bar.png
    R doc/manual/source/images/MW-bar.png
    R doc/manual/source/images/RINplot.png
    R doc/manual/source/images/TINplot.png
    R doc/manual/source/images/UltraScan-logo.png
    R doc/manual/source/images/add_RIN-TIN.png
    R doc/manual/source/images/add_RIN.png
    R doc/manual/source/images/add_TIN.png
    R doc/manual/source/images/advanced_config.png
    R doc/manual/source/images/analyte_details.png
    R doc/manual/source/images/analyte_edit.png
    R doc/manual/source/images/analyte_edit_spec.png
    R doc/manual/source/images/analyte_new_sequence.png
    R doc/manual/source/images/analyte_newc.png
    R doc/manual/source/images/analyte_newd.png
    R doc/manual/source/images/analyte_newp.png
    R doc/manual/source/images/analyte_selectc.png
    R doc/manual/source/images/analyte_selectd.png
    R doc/manual/source/images/analyte_selectp.png
    R doc/manual/source/images/analyte_sequence.png
    R doc/manual/source/images/analyte_settings.png
    R doc/manual/source/images/analyte_spec-gui.png
    R doc/manual/source/images/analyte_specmenu.png
    R doc/manual/source/images/analyte_spectrum.png
    R doc/manual/source/images/analytes.png
    R doc/manual/source/images/associations.png
    R doc/manual/source/images/astfem_sim.png
    R doc/manual/source/images/bad_grid.png
    R doc/manual/source/images/beck_convert-2.png
    R doc/manual/source/images/beck_converter.png
    R doc/manual/source/images/bitmap.png
    R doc/manual/source/images/buffer_edit.png
    R doc/manual/source/images/buffer_edit_setting.png
    R doc/manual/source/images/buffer_edit_spectrum.png
    R doc/manual/source/images/buffer_info.png
    R doc/manual/source/images/buffer_manage_spectrum.png
    R doc/manual/source/images/buffer_new.png
    R doc/manual/source/images/buffer_new_spectrum.png
    R doc/manual/source/images/buffer_select.png
    R doc/manual/source/images/buffer_settings.png
    R doc/manual/source/images/buffer_spectrum.png
    R doc/manual/source/images/cfa_view-loadauc.png
    R doc/manual/source/images/cfa_view-loadraw.png
    R doc/manual/source/images/cfa_view-main.png
    R doc/manual/source/images/cfa_view-statsauc.png
    R doc/manual/source/images/cfa_view-statsraw.png
    R doc/manual/source/images/color-1.png
    R doc/manual/source/images/color-2.png
    R doc/manual/source/images/color-a.png
    R doc/manual/source/images/color-b.png
    R doc/manual/source/images/colorgrad1.png
    R doc/manual/source/images/colorgradient/col1_colgen.png
    R doc/manual/source/images/colorgradient/col1_colgen_Fe_match.png
    R doc/manual/source/images/colorgradient/col1_colgen_GA.png
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  Log Message:
  -----------
  mod: removed documentation.


  Commit: f448548065ff12b1c240270de9d4827cf5f51a79
      https://github.com/ehb54/ultrascan3/commit/f448548065ff12b1c240270de9d4827cf5f51a79
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-24 (Tue, 24 Mar 2026)

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    R doc/manual/index.body
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    R doc/manual/mainstyle.css
    R doc/manual/make-docs.sh
    R doc/manual/make-html.sh
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    R doc/manual/make-wraps.sh
    R doc/manual/manage_data.body
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    R doc/manual/simparams.body
    R doc/manual/somo.body
    A doc/manual/source/_static/css/custom.css
    A doc/manual/source/_static/js/language_data.js
    A doc/manual/source/_static/js/sphinx_highlight.js
    A doc/manual/source/conf.py
    A doc/manual/source/index.rst
    A doc/manual/source/requirements.txt
    R doc/manual/template.img.body
    R doc/manual/tidy.conf
    R doc/manual/time_derivative.body
    R doc/manual/ultrascan3.txt
    R doc/manual/us_buffer.body
    R doc/manual/us_edit.body
    R doc/manual/us_edit_mwl.body
    R doc/manual/us_equiltime.body
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    R doc/manual/vhw_combine.body
    R doc/manual/vhw_distrib_plot.body
    R doc/manual/vhw_enhanced.body
    R doc/manual/wrapped-images.lst
    M gui/CMakeLists.txt
    M gui/us_help.cpp
    M makeall.sh
    A pkg/macos/README.md
    A pkg/macos/component.plist
    A pkg/macos/distribution.xml.in
    A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist
    A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3
    A pkg/macos/postinstall
    A pkg/macos/preinstall
    A pkg/macos/resources/Welcome.txt.in
    A pkg/macos/resources/background.png
    A pkg/macos/ultrascan_sysctl.plist
    A pkg/macos/uninstall.sh
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us/revision.sh
    M programs/us/us.cpp
    M programs/us_helpdaemon/us_helpdaemon.cpp
    M programs/us_mpi_analysis/2dsa_worker.cpp
    M programs/us_mpi_analysis/CMakeLists.txt
    M programs/us_mpi_analysis/pcsa_worker.cpp
    M programs/us_mpi_analysis/revision.sh
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M qwtplot3d/CMakeLists.txt
    A scripts/bootstrap-linux.sh
    A scripts/bootstrap-macos.sh
    A scripts/bootstrap-windows.ps1
    A scripts/bootstrap.bat
    M scripts/build.bat
    M scripts/build.ps1
    M scripts/build.sh
    A us-build
    M utils/CMakeLists.txt
    M utils/us_memory.cpp
    M vcpkg.json

  Log Message:
  -----------
  Merge pull request #374 from ehb54/527-enhancement-sphinx-migration-2

Integrate Sphinx Document Generation


  Commit: 0a9196aea05b0dc1c6f984302c09ffefa32db302
      https://github.com/ehb54/ultrascan3/commit/0a9196aea05b0dc1c6f984302c09ffefa32db302
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-24 (Tue, 24 Mar 2026)

  Changed paths:
    M .github/workflows/bump-version.yml
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    M LICENSE.txt
    M README.manual
    M admin/cmake/GenerateVersion.cmake
    A admin/cmake/README.md
    A admin/cmake/packaging/README.md
    A admin/cmake/packaging/linux/LinuxDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcPkg.cmake
    A admin/cmake/packaging/linux/LinuxPkg.cmake
    A admin/cmake/packaging/macos/MacDeploy.cmake
    A admin/cmake/packaging/macos/MacHpcDeploy.cmake
    A admin/cmake/packaging/macos/MacHpcPkg.cmake
    A admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
    A admin/cmake/packaging/macos/MacOsPkg.cmake
    A admin/cmake/packaging/macos/StageAssistantDev.cmake
    A admin/cmake/packaging/windows/WinDeploy.cmake
    A admin/cmake/packaging/windows/WinPkg.cmake
    A admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
    M admin/cmake/toolchain.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/fix-arm64-no-fpu-neon64.patch
    A buildsys/vcpkg/overlay-ports/mpg123/have-fpu.diff
    A buildsys/vcpkg/overlay-ports/mpg123/pkgconfig.diff
    A buildsys/vcpkg/overlay-ports/mpg123/portfile.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/vcpkg.json
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
    A buildsys/vcpkg/overlay-ports/qttools/port.data.cmake
    A buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat
    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
    R doc/manual/2dsa/2dsa.body
    R doc/manual/2dsa/2dsa_advan.body
    R doc/manual/2dsa/2dsa_analvv.body
    R doc/manual/2dsa/2dsa_analys.body
    M doc/manual/CMakeLists.txt
    M doc/manual/Makefile
    M doc/manual/README.md
    R doc/manual/advanced_config.body
    R doc/manual/analytes.body
    R doc/manual/associations.body
    R doc/manual/astfem_sim.body
    R doc/manual/buffer_edit.body
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    R doc/manual/buffer_select.body
    R doc/manual/buffer_settings.body
    R doc/manual/cfa_viewer.body
    R doc/manual/colorgradient.body
    R doc/manual/combine_models.body
    R doc/manual/components.body
    R doc/manual/config.body
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    R doc/manual/experiment/experiment_general.body
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    R doc/manual/experiment/experiment_rotor.body
    R doc/manual/experiment/experiment_solutions.body
    R doc/manual/experiment/experiment_speeds.body
    R doc/manual/experiment/experiment_upload.body
    R doc/manual/export_legacy.body
    R doc/manual/fe_match/fe_match.body
    R doc/manual/fe_match/fe_match_adv.body
    R doc/manual/fe_match/fe_match_controls.body
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    R doc/manual/gmp/gmp.body
    R doc/manual/gmp/gmp_audit_trail.body
    R doc/manual/gmp/gmp_data_acquisition.body
    R doc/manual/gmp/gmp_data_acquisition_experiment.body
    R doc/manual/gmp/gmp_data_acquisition_gmp.body
    R doc/manual/gmp/gmp_protocol_development.body
    R doc/manual/gmp/gmp_report_generator.body
    R doc/manual/gmp/gmp_signature.body
    R doc/manual/grid_editor.body
    R doc/manual/header.us3
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    R doc/manual/images/2dsa_analys.png
    R doc/manual/images/2dsa_main-c.png
    R doc/manual/images/2dsa_main-o.png
    R doc/manual/images/2dsa_resplot.png
    R doc/manual/images/advanced_config.png
    R doc/manual/images/analyte_details.png
    R doc/manual/images/analytes.png
    R doc/manual/images/associations.png
    R doc/manual/images/astfem_sim.png
    R doc/manual/images/buffer_edit.png
    R doc/manual/images/buffer_info.png
    R doc/manual/images/buffer_new.png
    R doc/manual/images/buffer_select.png
    R doc/manual/images/buffer_settings.png
    R doc/manual/images/cfa_view-loadauc.png
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    M gui/us_plot.h
    M makeall.sh
    A pkg/macos/README.md
    A pkg/macos/component.plist
    A pkg/macos/distribution.xml.in
    A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist
    A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3
    A pkg/macos/postinstall
    A pkg/macos/preinstall
    A pkg/macos/resources/Welcome.txt.in
    A pkg/macos/resources/background.png
    A pkg/macos/ultrascan_sysctl.plist
    A pkg/macos/uninstall.sh
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us/revision.sh
    M programs/us/us.cpp
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_config/us_admin.cpp
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_helpdaemon/us_helpdaemon.cpp
    M programs/us_mpi_analysis/2dsa_worker.cpp
    M programs/us_mpi_analysis/CMakeLists.txt
    M programs/us_mpi_analysis/pcsa_worker.cpp
    M programs/us_mpi_analysis/revision.sh
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h
    M qwtplot3d/CMakeLists.txt
    A scripts/bootstrap-linux.sh
    A scripts/bootstrap-macos.sh
    A scripts/bootstrap-windows.ps1
    A scripts/bootstrap.bat
    M scripts/build.bat
    M scripts/build.ps1
    M scripts/build.sh
    M test/utils/test_us_crypto.cpp
    A us-build
    M utils/CMakeLists.txt
    M utils/us_crypto.cpp
    M utils/us_memory.cpp
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


  Commit: a3d889c69f7012ff5840a86814780d3490d5ea2a
      https://github.com/ehb54/ultrascan3/commit/a3d889c69f7012ff5840a86814780d3490d5ea2a
  Author: emre brookes <ehb54 at users.noreply.github.com>
  Date:   2026-03-24 (Tue, 24 Mar 2026)

  Changed paths:
    M programs/us/revision.sh

  Log Message:
  -----------
  Merge pull request #377 from ehb54/ehb54-issue-670

fix revision.sh checks osx/linux compat.


  Commit: 0edd938cf399707e6d86943f10390b0a77039959
      https://github.com/ehb54/ultrascan3/commit/0edd938cf399707e6d86943f10390b0a77039959
  Author: Haben Gabir <haben.gabir at uleth.ca>
  Date:   2026-03-24 (Tue, 24 Mar 2026)

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    A doc/manual/source/pcsa/pcsa_rpscan.rst
    A doc/manual/source/predict1.rst
    A doc/manual/source/predict2.rst
    A doc/manual/source/pseudo3d.rst
    A doc/manual/source/register.rst
    A doc/manual/source/reporter.rst
    M doc/manual/source/requirements.txt
    A doc/manual/source/rmsd_query.rst
    A doc/manual/source/rotor.rst
    A doc/manual/source/rotor_calibration.rst
    A doc/manual/source/run_details.rst
    A doc/manual/source/sassoc.rst
    A doc/manual/source/second_moment.rst
    A doc/manual/source/simparams.rst
    A doc/manual/source/solutions/index.rst
    A doc/manual/source/solutions/solution_edit.rst
    A doc/manual/source/solutions/solution_new.rst
    A doc/manual/source/solutions/solution_select.rst
    A doc/manual/source/solutions/solution_settings.rst
    A doc/manual/source/start_page-abde.rst
    A doc/manual/source/start_page-dm.rst
    A doc/manual/source/start_page-int.rst
    A doc/manual/source/start_page-mw.rst
    A doc/manual/source/start_page-new.rst
    A doc/manual/source/start_page-rpt.rst
    A doc/manual/source/start_page.rst
    A doc/manual/source/temp.txt
    A doc/manual/source/time_derivative.rst
    A doc/manual/source/tmp.rst
    A doc/manual/source/tmst_viewer.rst
    A doc/manual/source/us_buoyancy.rst
    A doc/manual/source/us_edit.rst
    A doc/manual/source/us_equiltime.rst
    A doc/manual/source/us_extinction.rst
    A doc/manual/source/us_fds_filemanager.rst
    A doc/manual/source/us_investigator.rst
    A doc/manual/source/us_modelmetrics.rst
    A doc/manual/source/us_project.rst
    A doc/manual/source/us_spectrum.rst
    A doc/manual/source/vhw_combine.rst
    A doc/manual/source/vhw_distrib_plot.rst
    A doc/manual/source/vhw_enhanced.rst
    A doc/manual/source/xpn_viewer.rst

  Log Message:
  -----------
  new source


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From noreply at github.com  Tue Mar 24 14:01:15 2026
From: noreply at github.com (aaron-auc)
Date: Tue, 24 Mar 2026 13:01:15 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/800-enhancement-nightly-build-using-vcpkg/000000-a3d889@github.com>

  Branch: refs/heads/800-enhancement-nightly-build-using-vcpkg
  Home:   https://github.com/ehb54/ultrascan3

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From noreply at github.com  Tue Mar 24 14:32:38 2026
From: noreply at github.com (aaron-auc)
Date: Tue, 24 Mar 2026 13:32:38 -0700
Subject: [us-commits] [ehb54/us3lims_dbinst] 5e2244: remove: webmaster,
 search, and partner pages
Message-ID: <ehb54/us3lims_dbinst/push/refs/heads/main/056032-3ab47a@github.com>

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/us3lims_dbinst
  Commit: 5e2244645ff5b0d2dd4765ca907d2b16ce45ccc0
      https://github.com/ehb54/us3lims_dbinst/commit/5e2244645ff5b0d2dd4765ca907d2b16ce45ccc0
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M data_security.php
    M links.php
    R partners.php
    R search.php

  Log Message:
  -----------
  remove: webmaster, search, and partner pages


  Commit: 3ab47a9bad1e7ce88eb4de8d0ed14713e0e7cdec
      https://github.com/ehb54/us3lims_dbinst/commit/3ab47a9bad1e7ce88eb4de8d0ed14713e0e7cdec
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-24 (Tue, 24 Mar 2026)

  Changed paths:
    M data_security.php
    M links.php
    R partners.php
    R search.php

  Log Message:
  -----------
  Merge pull request #52 from ehb54/793-request-remove-from-lims-webmaster-partners

Remove webmaster, search, and partner pages


Compare: https://github.com/ehb54/us3lims_dbinst/compare/0560329ba70f...3ab47a9bad1e

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From noreply at github.com  Tue Mar 24 14:32:42 2026
From: noreply at github.com (aaron-auc)
Date: Tue, 24 Mar 2026 13:32:42 -0700
Subject: [us-commits] [ehb54/us3lims_dbinst]
Message-ID: <ehb54/us3lims_dbinst/push/refs/heads/793-request-remove-from-lims-webmaster-partners/5e2244-000000@github.com>

  Branch: refs/heads/793-request-remove-from-lims-webmaster-partners
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From noreply at github.com  Tue Mar 24 14:33:01 2026
From: noreply at github.com (aaron-auc)
Date: Tue, 24 Mar 2026 13:33:01 -0700
Subject: [us-commits] [ehb54/us3lims_common]
Message-ID: <ehb54/us3lims_common/push/refs/heads/793-request-remove-from-lims-webmaster-partners/aabde4-000000@github.com>

  Branch: refs/heads/793-request-remove-from-lims-webmaster-partners
  Home:   https://github.com/ehb54/us3lims_common

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From noreply at github.com  Tue Mar 24 14:32:59 2026
From: noreply at github.com (aaron-auc)
Date: Tue, 24 Mar 2026 13:32:59 -0700
Subject: [us-commits] [ehb54/us3lims_common] aabde4: remove: webmaster,
 search, and partner pages
Message-ID: <ehb54/us3lims_common/push/refs/heads/main/96fe83-913646@github.com>

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/us3lims_common
  Commit: aabde4ef74135b96be4b4009e16694f9df9d346d
      https://github.com/ehb54/us3lims_common/commit/aabde4ef74135b96be4b4009e16694f9df9d346d
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    R images/TACC.gif
    M images/favicon.ico
    R images/iu.png
    R images/prace_logo.png
    R images/sdsc_logo.png
    R images/teragrid.png
    R images/uthscsa.gif
    R images/uthscsa_logo.png
    R images/xsede.png
    R partners.php
    R search.php

  Log Message:
  -----------
  remove: webmaster, search, and partner pages


  Commit: 913646bae3896ba0b68accc3bed93947fd17dc9f
      https://github.com/ehb54/us3lims_common/commit/913646bae3896ba0b68accc3bed93947fd17dc9f
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-24 (Tue, 24 Mar 2026)

  Changed paths:
    R images/TACC.gif
    M images/favicon.ico
    R images/iu.png
    R images/prace_logo.png
    R images/sdsc_logo.png
    R images/teragrid.png
    R images/uthscsa.gif
    R images/uthscsa_logo.png
    R images/xsede.png
    R partners.php
    R search.php

  Log Message:
  -----------
  Merge pull request #17 from ehb54/793-request-remove-from-lims-webmaster-partners

Remove webmaster, search, and partner pages


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From noreply at github.com  Tue Mar 24 14:37:19 2026
From: noreply at github.com (aaron-auc)
Date: Tue, 24 Mar 2026 13:37:19 -0700
Subject: [us-commits] [ehb54/ultrascan3]
Message-ID: <ehb54/ultrascan3/push/refs/heads/691-request-update-workflow-to-add-version-file-and-update-version-in-us_definesh/99f518-000000@github.com>

  Branch: refs/heads/691-request-update-workflow-to-add-version-file-and-update-version-in-us_definesh
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From noreply at github.com  Tue Mar 24 15:38:43 2026
From: noreply at github.com (alexsav815)
Date: Tue, 24 Mar 2026 14:38:43 -0700
Subject: [us-commits] [ehb54/ultrascan3] 3812e8: GMP 6. REPORT |
 GMP-REPORTER -- inject bookmarks b...
Message-ID: <ehb54/ultrascan3/push/refs/heads/alexey-dev-issue798/cb1925-3812e8@github.com>

  Branch: refs/heads/alexey-dev-issue798
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 3812e8a5445e28addb458b51dd6ca1b5aab09ddf
      https://github.com/ehb54/ultrascan3/commit/3812e8a5445e28addb458b51dd6ca1b5aab09ddf
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-24 (Tue, 24 Mar 2026)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.pro
    M programs/us_com_project/us_com_project.pro
    M programs/us_com_project_academic/us_com_project_academic.pro
    M programs/us_fematch/us_fematch.pro
    M programs/us_protocol_dev/us_protocol_dev.pro
    M programs/us_query_rmsd/us_query_rmsd.pro
    M programs/us_reporter_gmp/CMakeLists.txt
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_reporter_gmp/us_reporter_gmp.pro

  Log Message:
  -----------
  GMP 6. REPORT | GMP-REPORTER -- inject bookmarks based on HTML's headers into final PDF report...



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From noreply at github.com  Tue Mar 24 15:49:15 2026
From: noreply at github.com (Lukas Dobler)
Date: Tue, 24 Mar 2026 14:49:15 -0700
Subject: [us-commits] [ehb54/ultrascan3] 254289: ACAB doubled
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_solution_analyte/ad1cea-aba103@github.com>

  Branch: refs/heads/lukas/us_solution_analyte
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 2542899201e17dd085de687f6fdfe671fa123bdb
      https://github.com/ehb54/ultrascan3/commit/2542899201e17dd085de687f6fdfe671fa123bdb
  Author: Haben Gabir <haben.gabir at uleth.ca>
  Date:   2026-01-22 (Thu, 22 Jan 2026)

  Changed paths:
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    A doc/manual/source/2dsa/2dsa_adv.rst
    A doc/manual/source/2dsa/2dsa_analys.rst
    A doc/manual/source/2dsa/2dsa_main.rst
    A doc/manual/source/2dsa/index.rst
    A doc/manual/source/3d_plot.rst
    A doc/manual/source/_static/css/custom.css
    A doc/manual/source/_static/custom.css
    A doc/manual/source/_static/images/2dsa_3dplot.png
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    A doc/manual/source/_static/images/2dsa_analvv.png
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    A doc/manual/source/_static/images/2dsa_resplot.png
    A doc/manual/source/_static/images/D20W_bar.png
    A doc/manual/source/_static/images/MW-bar.png
    A doc/manual/source/_static/images/RINplot.png
    A doc/manual/source/_static/images/TINplot.png
    A doc/manual/source/_static/images/UltraScan-logo.png
    A doc/manual/source/_static/images/add_RIN-TIN.png
    A doc/manual/source/_static/images/add_RIN.png
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    A doc/manual/source/_static/images/advanced_config.png
    A doc/manual/source/_static/images/analyte_details.png
    A doc/manual/source/_static/images/analyte_edit.png
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  Log Message:
  -----------
  ACAB doubled


  Commit: 8617cadc6147eda447864b6626622e9bffa4128e
      https://github.com/ehb54/ultrascan3/commit/8617cadc6147eda447864b6626622e9bffa4128e
  Author: Haben Gabir <haben.gabir at uleth.ca>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
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  Log Message:
  -----------
  WALICAFB


  Commit: 779bf5e32b16d7eddc415ecc2fe90709ac0026b9
      https://github.com/ehb54/ultrascan3/commit/779bf5e32b16d7eddc415ecc2fe90709ac0026b9
  Author: Haben Gabir <haben.gabir at uleth.ca>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
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    M admin/cmake/triplets/x64-osx-dynamic.cmake
    R alpha/srcdevel
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    M gui/us_csv_loader.cpp
    M gui/us_model_loader.cpp
    M gui/us_plot.cpp
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    M programs/CMakeLists.txt
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    M programs/us_2dsa/us_2dsa.cpp
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    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
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    M programs/us_fit_meniscus/us_fit_meniscus.h
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    M programs/us_pcsa/us_pcsa.cpp
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    M scripts/build.sh
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  Log Message:
  -----------
  Merge remote-tracking branch 'origin/main' into haben-Dev


  Commit: 7bf106993a8f72d94033f56ec908772b1087c0ef
      https://github.com/ehb54/ultrascan3/commit/7bf106993a8f72d94033f56ec908772b1087c0ef
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
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    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
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    R doc/manual/index.body
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    R doc/manual/mainstyle.css
    R doc/manual/make-docs.sh
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    R doc/manual/manage_data.body
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    R doc/manual/source/#Makefile#
    M doc/manual/source/conf.py
    R doc/manual/source/make.bat
    M doc/manual/source/requirements.txt
    R doc/manual/template.img.body
    R doc/manual/tidy.conf
    R doc/manual/time_derivative.body
    R doc/manual/ultrascan3.txt
    R doc/manual/us_buffer.body
    R doc/manual/us_edit.body
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    R doc/manual/us_equiltime.body
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    R doc/manual/wrapped-images.lst
    M gui/us_help.cpp
    M makeall.sh
    M scripts/build.sh
    R vcpkg
    M vcpkg.json

  Log Message:
  -----------
  mod: delete legacy help, integrate sphinx help


  Commit: 3d08b0b47f4e2317e53a69e11dc522f164182ec7
      https://github.com/ehb54/ultrascan3/commit/3d08b0b47f4e2317e53a69e11dc522f164182ec7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake

  Log Message:
  -----------
  mod: release only build for macos


  Commit: 7d351ae823d28a24be8d1406165cb8c4887fb1e7
      https://github.com/ehb54/ultrascan3/commit/7d351ae823d28a24be8d1406165cb8c4887fb1e7
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M gui/us_report_gui.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_proto_ranges.cpp

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 534da76a2eb5090416dc3e2fa4416db272ac9b91
      https://github.com/ehb54/ultrascan3/commit/534da76a2eb5090416dc3e2fa4416db272ac9b91
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-24 (Tue, 24 Feb 2026)

  Changed paths:
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_experiment/us_experiment_gui_optima.h

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: d28e726d4e40aae7be0f55ed03c1e7fe45e36d00
      https://github.com/ehb54/ultrascan3/commit/d28e726d4e40aae7be0f55ed03c1e7fe45e36d00
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-24 (Tue, 24 Feb 2026)

  Changed paths:
    M doc/manual/source/colorgradient.rst
    M doc/manual/source/conf.py
    M doc/manual/source/config.rst
    M doc/manual/source/experiment/range.rst
    M doc/manual/source/export_legacy.rst
    M doc/manual/source/fe_match/fe_match_main.rst
    M doc/manual/source/fe_match/fe_match_simulate.rst
    M doc/manual/source/ga_initialize.rst
    M doc/manual/source/grid_editor.rst
    M doc/manual/source/manage_data.rst
    M doc/manual/source/mwl_spectra.rst
    M doc/manual/source/mwlr_viewer.rst
    M doc/manual/source/pcsa/pcsa_analys.rst
    M doc/manual/source/requirements.txt
    M doc/manual/source/us_project.rst
    M doc/manual/source/vhw_combine.rst

  Log Message:
  -----------
  mod: migrate to sphinx-design from subfigure


  Commit: 8318d566a89cb3e06093e1d79d56d11d3488103a
      https://github.com/ehb54/ultrascan3/commit/8318d566a89cb3e06093e1d79d56d11d3488103a
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    R admin/cmake/toolchain-macos.cmake
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M programs/us/CMakeLists.txt
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 89b7691a714d92e99e335e23378d225aa3b1b536
      https://github.com/ehb54/ultrascan3/commit/89b7691a714d92e99e335e23378d225aa3b1b536
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M programs/us/revision.sh

  Log Message:
  -----------
  fix revision.sh checks osx/linux compat.


  Commit: 572bb723ed591be3225aacbdbc387c93c17ca792
      https://github.com/ehb54/ultrascan3/commit/572bb723ed591be3225aacbdbc387c93c17ca792
  Author: emre brookes <ehb54 at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M gui/us_spectrodata.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


  Commit: 85100ef73842bc75a8f210f7b9038301adae82db
      https://github.com/ehb54/ultrascan3/commit/85100ef73842bc75a8f210f7b9038301adae82db
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M gui/us_spectrodata.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 7f63285b165bc88c2a317f9f368082e0d24d8861
      https://github.com/ehb54/ultrascan3/commit/7f63285b165bc88c2a317f9f368082e0d24d8861
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-28 (Sat, 28 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    A admin/cmake/MacDeploy.cmake
    R buildsys/vcpkg/overlay-ports/qt5-tools/fix-pkgconfig-qt5uiplugin-not-found.patch
    R buildsys/vcpkg/overlay-ports/qt5-tools/fix-spawnvp-argv.patch
    R buildsys/vcpkg/overlay-ports/qt5-tools/libclang.patch
    R buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    R buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    M doc/manual/CMakeLists.txt
    A doc/manual/StageAssistant.cmake
    M doc/manual/source/mwl_spectra.rst
    M gui/CMakeLists.txt
    M gui/us_help.cpp
    M programs/us_helpdaemon/us_helpdaemon.cpp
    M qwtplot3d/CMakeLists.txt
    M scripts/build.sh
    M vcpkg.json

  Log Message:
  -----------
  fix: fix qt help search and implement dmg


  Commit: 8e3d67b30d1a4eaf6faf0d18d80a835288ee5ae7
      https://github.com/ehb54/ultrascan3/commit/8e3d67b30d1a4eaf6faf0d18d80a835288ee5ae7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-28 (Sat, 28 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    R admin/cmake/toolchain-macos.cmake
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M gui/us_spectrodata.h
    M programs/us/CMakeLists.txt
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    M vcpkg.json

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2

# Conflicts:
#	.gitignore
#	scripts/build.sh


  Commit: ef3356b450a93ec526f92ee27da0a9bfcfa9c04a
      https://github.com/ehb54/ultrascan3/commit/ef3356b450a93ec526f92ee27da0a9bfcfa9c04a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-01 (Sun, 01 Mar 2026)

  Changed paths:
    M LICENSE.txt

  Log Message:
  -----------
  fix: text was original utf-8 so quotes became questions marks with ascii tool. Changed ? to ascii quotes.


  Commit: 82c2dc2269b90376cf1f69ca3f88b4bee38c641e
      https://github.com/ehb54/ultrascan3/commit/82c2dc2269b90376cf1f69ca3f88b4bee38c641e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    R admin/cmake/MacDeploy.cmake
    A admin/cmake/packaging/macos/MacDeploy.cmake
    A admin/cmake/packaging/macos/MacOsPkg.cmake
    A pkg/macos/component.plist
    A pkg/macos/distribution.xml.in
    A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist
    A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3
    A pkg/macos/postinstall
    A pkg/macos/preinstall
    A pkg/macos/resources/Welcome.txt.in
    A pkg/macos/resources/background.png
    A pkg/macos/ultrascan_sysctl.plist
    A pkg/macos/uninstall.sh
    M scripts/build.sh

  Log Message:
  -----------
  add: launcher and packaging step


  Commit: 88ef4e481d1b4ea751d997b156e3782f1befce93
      https://github.com/ehb54/ultrascan3/commit/88ef4e481d1b4ea751d997b156e3782f1befce93
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    M admin/cmake/packaging/macos/MacDeploy.cmake
    M admin/cmake/toolchain.cmake
    M doc/manual/CMakeLists.txt
    M doc/manual/StageAssistant.cmake

  Log Message:
  -----------
  add: working qt6 build and install


  Commit: 04583d8a1b0bcf01875f31b93a12343610284126
      https://github.com/ehb54/ultrascan3/commit/04583d8a1b0bcf01875f31b93a12343610284126
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    A admin/cmake/packaging/windows/WinDeploy.cmake
    A admin/cmake/packaging/windows/WinPkg.cmake

  Log Message:
  -----------
  add: windows installer


  Commit: 20b958cec1d253988daedd88a2fec65efd28448d
      https://github.com/ehb54/ultrascan3/commit/20b958cec1d253988daedd88a2fec65efd28448d
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  add: pkg command to build.ps1


  Commit: 2698e05dd320a374785cab43ed05a52db3c5c3a7
      https://github.com/ehb54/ultrascan3/commit/2698e05dd320a374785cab43ed05a52db3c5c3a7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinPkg.cmake
    M scripts/build.ps1

  Log Message:
  -----------
  fix: missing programs in installer package


  Commit: 499648d1ea27751d008981e0d9f1447cfbef7072
      https://github.com/ehb54/ultrascan3/commit/499648d1ea27751d008981e0d9f1447cfbef7072
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M scripts/build.ps1

  Log Message:
  -----------
  fix: missing sphinx on windows build


  Commit: b2c2afd33a8ed941e547021628bcb32abea1675a
      https://github.com/ehb54/ultrascan3/commit/b2c2afd33a8ed941e547021628bcb32abea1675a
  Author: emre brookes <ehb54 at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M utils/libus_utils.pro
    M utils/us_crypto.cpp
    M utils/us_crypto.h

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


  Commit: 6a9245189a1804e4557df78035f6f4401a5883ea
      https://github.com/ehb54/ultrascan3/commit/6a9245189a1804e4557df78035f6f4401a5883ea
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M doc/manual/Makefile
    M doc/manual/source/2dsa/2dsa_adv.rst
    M doc/manual/source/2dsa/2dsa_analys.rst
    M doc/manual/source/2dsa/2dsa_main.rst
    M doc/manual/source/2dsa/index.rst
    M doc/manual/source/3d_plot.rst
    R doc/manual/source/_static/custom.css
    R doc/manual/source/_static/images/2dsa_3dplot.png
    R doc/manual/source/_static/images/2dsa_advan.png
    R doc/manual/source/_static/images/2dsa_analvv.png
    R doc/manual/source/_static/images/2dsa_analys.png
    R doc/manual/source/_static/images/2dsa_main-c.png
    R doc/manual/source/_static/images/2dsa_main-o.png
    R doc/manual/source/_static/images/2dsa_resplot.png
    R doc/manual/source/_static/images/D20W_bar.png
    R doc/manual/source/_static/images/MW-bar.png
    R doc/manual/source/_static/images/RINplot.png
    R doc/manual/source/_static/images/TINplot.png
    R doc/manual/source/_static/images/UltraScan-logo.png
    R doc/manual/source/_static/images/add_RIN-TIN.png
    R doc/manual/source/_static/images/add_RIN.png
    R doc/manual/source/_static/images/add_TIN.png
    R doc/manual/source/_static/images/advanced_config.png
    R doc/manual/source/_static/images/analyte_details.png
    R doc/manual/source/_static/images/analyte_edit.png
    R doc/manual/source/_static/images/analyte_edit_spec.png
    R doc/manual/source/_static/images/analyte_new_sequence.png
    R doc/manual/source/_static/images/analyte_newc.png
    R doc/manual/source/_static/images/analyte_newd.png
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    R doc/manual/source/_static/images/analyte_selectc.png
    R doc/manual/source/_static/images/analyte_selectd.png
    R doc/manual/source/_static/images/analyte_selectp.png
    R doc/manual/source/_static/images/analyte_sequence.png
    R doc/manual/source/_static/images/analyte_settings.png
    R doc/manual/source/_static/images/analyte_spec-gui.png
    R doc/manual/source/_static/images/analyte_specmenu.png
    R doc/manual/source/_static/images/analyte_spectrum.png
    R doc/manual/source/_static/images/analytes.png
    R doc/manual/source/_static/images/associations.png
    R doc/manual/source/_static/images/astfem_sim.png
    R doc/manual/source/_static/images/bad_grid.png
    R doc/manual/source/_static/images/beck_convert-2.png
    R doc/manual/source/_static/images/beck_converter.png
    R doc/manual/source/_static/images/bitmap.png
    R doc/manual/source/_static/images/buffer_edit.png
    R doc/manual/source/_static/images/buffer_edit_setting.png
    R doc/manual/source/_static/images/buffer_edit_spectrum.png
    R doc/manual/source/_static/images/buffer_info.png
    R doc/manual/source/_static/images/buffer_manage_spectrum.png
    R doc/manual/source/_static/images/buffer_new.png
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    R doc/manual/source/_static/images/buffer_select.png
    R doc/manual/source/_static/images/buffer_settings.png
    R doc/manual/source/_static/images/buffer_spectrum.png
    R doc/manual/source/_static/images/cfa_view-loadauc.png
    R doc/manual/source/_static/images/cfa_view-loadraw.png
    R doc/manual/source/_static/images/cfa_view-main.png
    R doc/manual/source/_static/images/cfa_view-statsauc.png
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    R doc/manual/source/_static/images/color-a.png
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    R doc/manual/source/_static/images/colorgrad1.png
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    A doc/manual/source/images/zvalue_eq.png
    M doc/manual/source/index.rst
    M doc/manual/source/manage_data.rst
    M doc/manual/source/model_editor.rst
    M doc/manual/source/mwl_spectra.rst
    M doc/manual/source/mwlr_viewer.rst
    M doc/manual/source/pcsa/index.rst
    M doc/manual/source/pcsa/pcsa.rst
    M doc/manual/source/pcsa/pcsa_adv.rst
    M doc/manual/source/pcsa/pcsa_analys.rst
    M doc/manual/source/pcsa/pcsa_mlines.rst
    M doc/manual/source/pcsa/pcsa_results.rst
    M doc/manual/source/pcsa/pcsa_rpscan.rst
    M doc/manual/source/predict1.rst
    M doc/manual/source/predict2.rst
    M doc/manual/source/pseudo3d.rst
    M doc/manual/source/register.rst
    M doc/manual/source/reporter.rst
    M doc/manual/source/requirements.txt
    M doc/manual/source/rmsd_query.rst
    M doc/manual/source/rotor.rst
    M doc/manual/source/rotor_calibration.rst
    M doc/manual/source/run_details.rst
    M doc/manual/source/sassoc.rst
    M doc/manual/source/second_moment.rst
    M doc/manual/source/simparams.rst
    M doc/manual/source/solutions/index.rst
    M doc/manual/source/solutions/solution_edit.rst
    M doc/manual/source/solutions/solution_new.rst
    M doc/manual/source/solutions/solution_select.rst
    M doc/manual/source/solutions/solution_settings.rst
    M doc/manual/source/temp.txt
    M doc/manual/source/time_derivative.rst
    M doc/manual/source/tmst_viewer.rst
    M doc/manual/source/us_buoyancy.rst
    M doc/manual/source/us_edit.rst
    M doc/manual/source/us_equiltime.rst
    M doc/manual/source/us_extinction.rst
    M doc/manual/source/us_fds_filemanager.rst
    M doc/manual/source/us_investigator.rst
    M doc/manual/source/us_modelmetrics.rst
    M doc/manual/source/us_project.rst
    M doc/manual/source/us_spectrum.rst
    M doc/manual/source/vhw_combine.rst
    M doc/manual/source/vhw_distrib_plot.rst
    M doc/manual/source/vhw_enhanced.rst
    M doc/manual/source/xpn_viewer.rst

  Log Message:
  -----------
  fix: change qthelp url to use manual instead of doc, use right project structure for images and update links


  Commit: b33c9b1cddd853e103542e10c4328830fc59e944
      https://github.com/ehb54/ultrascan3/commit/b33c9b1cddd853e103542e10c4328830fc59e944
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    A admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
    M admin/cmake/packaging/windows/WinDeploy.cmake
    A admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
    M doc/manual/CMakeLists.txt
    R doc/manual/StageAssistant.cmake
    M programs/us/CMakeLists.txt
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  mod: windows and macos qt assistant fix


  Commit: adb74a9f1e5a1e238c264228544137f56a4125b5
      https://github.com/ehb54/ultrascan3/commit/adb74a9f1e5a1e238c264228544137f56a4125b5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  fix: builddir set at the beginning


  Commit: cea2ea0e77baf6dbcc9097b3062ede36ca70f800
      https://github.com/ehb54/ultrascan3/commit/cea2ea0e77baf6dbcc9097b3062ede36ca70f800
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M doc/manual/CMakeLists.txt
    M scripts/build.ps1

  Log Message:
  -----------
  fix: windows path issues


  Commit: 99a443309500f6d44fde4d4ba640770dfadeec24
      https://github.com/ehb54/ultrascan3/commit/99a443309500f6d44fde4d4ba640770dfadeec24
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
    M doc/manual/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_helpdaemon/us_helpdaemon.cpp

  Log Message:
  -----------
  fix: windows missing dll


  Commit: 399ad6ee7636d4885c37adff02b723d1e6af48c9
      https://github.com/ehb54/ultrascan3/commit/399ad6ee7636d4885c37adff02b723d1e6af48c9
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    A admin/cmake/packaging/linux/LinuxDeploy.cmake
    A admin/cmake/packaging/linux/LinuxPkg.cmake
    M scripts/build.sh
    M utils/CMakeLists.txt

  Log Message:
  -----------
  add: linux cmake packaging


  Commit: c3215226c1e826bd7c620115a98fe3694cfe771e
      https://github.com/ehb54/ultrascan3/commit/c3215226c1e826bd7c620115a98fe3694cfe771e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.sh
    M utils/us_memory.cpp

  Log Message:
  -----------
  fix: cross platform page size


  Commit: 16d1f75e51f11ad87c8f18b11e0a8a2bb755ea44
      https://github.com/ehb54/ultrascan3/commit/16d1f75e51f11ad87c8f18b11e0a8a2bb755ea44
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M admin/cmake/packaging/linux/LinuxDeploy.cmake
    M scripts/build.ps1
    M scripts/build.sh
    M vcpkg.json

  Log Message:
  -----------
  fix: assistant on linux


  Commit: 5ab554ce68ae411774740695115c51b480df8c8a
      https://github.com/ehb54/ultrascan3/commit/5ab554ce68ae411774740695115c51b480df8c8a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  fix: vcpkg cache clear


  Commit: a8b6e9963d8ed447dc737af6b4e3b69c3894945f
      https://github.com/ehb54/ultrascan3/commit/a8b6e9963d8ed447dc737af6b4e3b69c3894945f
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  fix: vcpkg cache clear fix


  Commit: 19f656eb532b2218880402623455153763d66d50
      https://github.com/ehb54/ultrascan3/commit/19f656eb532b2218880402623455153763d66d50
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt

  Log Message:
  -----------
  fix: assistant now copied to bin on dev build


  Commit: 75e0dc23de6fbdd330b322115c640d973e916d02
      https://github.com/ehb54/ultrascan3/commit/75e0dc23de6fbdd330b322115c640d973e916d02
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt

  Log Message:
  -----------
  fix: assistant find update


  Commit: 57f162e692e1a548bb426454e7e768e6f68b1bc4
      https://github.com/ehb54/ultrascan3/commit/57f162e692e1a548bb426454e7e768e6f68b1bc4
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M programs/us/us.cpp

  Log Message:
  -----------
  fix: program path issue


  Commit: 4700970e14e8ef1bf44b3fe91efd8dbcd15ba544
      https://github.com/ehb54/ultrascan3/commit/4700970e14e8ef1bf44b3fe91efd8dbcd15ba544
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt

  Log Message:
  -----------
  fix: assistant not found


  Commit: 14d6c7e63b928fb3a73559fdafa9426502eda98c
      https://github.com/ehb54/ultrascan3/commit/14d6c7e63b928fb3a73559fdafa9426502eda98c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  fix: guard specific macos required tools


  Commit: 1c6be4ed0464373db7a5a1a6a780f17bc12dbcf5
      https://github.com/ehb54/ultrascan3/commit/1c6be4ed0464373db7a5a1a6a780f17bc12dbcf5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/linux/LinuxDeploy.cmake

  Log Message:
  -----------
  fix: missing library in pkg


  Commit: 216860fe02c9358e021e6a54b84aa2aa0e462a99
      https://github.com/ehb54/ultrascan3/commit/216860fe02c9358e021e6a54b84aa2aa0e462a99
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  fix: rcc error


  Commit: be038ad56e172897c3f18b8a1319fced62a708a0
      https://github.com/ehb54/ultrascan3/commit/be038ad56e172897c3f18b8a1319fced62a708a0
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M admin/cmake/packaging/linux/LinuxDeploy.cmake

  Log Message:
  -----------
  fix: update plugin directory


  Commit: 87c38bbe59db529cf02b7887c7bfe57ebc8e62da
      https://github.com/ehb54/ultrascan3/commit/87c38bbe59db529cf02b7887c7bfe57ebc8e62da
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/linux/LinuxDeploy.cmake

  Log Message:
  -----------
  add: readme


  Commit: f4323bc883bb8996c6e627bfb9b8295063ef176f
      https://github.com/ehb54/ultrascan3/commit/f4323bc883bb8996c6e627bfb9b8295063ef176f
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    M admin/cmake/GenerateVersion.cmake
    A admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcPkg.cmake
    A admin/cmake/packaging/macos/MacHpcDeploy.cmake
    A admin/cmake/packaging/macos/MacHpcPkg.cmake
    M programs/CMakeLists.txt
    M programs/us_mpi_analysis/2dsa_worker.cpp
    M programs/us_mpi_analysis/CMakeLists.txt
    M programs/us_mpi_analysis/pcsa_worker.cpp
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M scripts/build.sh

  Log Message:
  -----------
  fix: hpc build


  Commit: c515903ce23bec6067e47ed10ae663518f3de230
      https://github.com/ehb54/ultrascan3/commit/c515903ce23bec6067e47ed10ae663518f3de230
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  mod: use all cores with CI runners


  Commit: 7a8a012754d242634bca20501e1a1c94be231d6c
      https://github.com/ehb54/ultrascan3/commit/7a8a012754d242634bca20501e1a1c94be231d6c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M CMakePresets.json
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  fix: CI runners and hpc build


  Commit: 5277352caa620430b2bf8a580f9f10d43218d930
      https://github.com/ehb54/ultrascan3/commit/5277352caa620430b2bf8a580f9f10d43218d930
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  fix: not all dependencies found


  Commit: 60b1b16425fcda080aea3bfac20f1abad9e8bc32
      https://github.com/ehb54/ultrascan3/commit/60b1b16425fcda080aea3bfac20f1abad9e8bc32
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  fix: dependenies added


  Commit: 3b29d9afdd3d29c7e33af7f0b989ccf1c642bc8c
      https://github.com/ehb54/ultrascan3/commit/3b29d9afdd3d29c7e33af7f0b989ccf1c642bc8c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    A scripts/bootstrap-deps.sh
    A scripts/bootstrap-macos.sh
    A scripts/bootstrap-windows.ps1
    A scripts/bootstrap.bat
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  fix: bootstrap deps


  Commit: 4975707ad3f001539ceeea7d716043118c23d07a
      https://github.com/ehb54/ultrascan3/commit/4975707ad3f001539ceeea7d716043118c23d07a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    A buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    M scripts/bootstrap-deps.sh

  Log Message:
  -----------
  fix: qt5 tools overlay


  Commit: e7e0613e5d7d234f835e4e9490416e0a7f5b9803
      https://github.com/ehb54/ultrascan3/commit/e7e0613e5d7d234f835e4e9490416e0a7f5b9803
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/bootstrap-deps.sh
    M scripts/bootstrap-macos.sh
    M scripts/build.sh
    A us-build

  Log Message:
  -----------
  add: bash wrapper


  Commit: b93b52b3acb64a650854a16f3983473f49becee9
      https://github.com/ehb54/ultrascan3/commit/b93b52b3acb64a650854a16f3983473f49becee9
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  mod: make profile positional for powershell


  Commit: dfec7b06f5af8e9ad31d7b4c682197a103bd5fb1
      https://github.com/ehb54/ultrascan3/commit/dfec7b06f5af8e9ad31d7b4c682197a103bd5fb1
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/bootstrap-windows.ps1
    M scripts/build.bat

  Log Message:
  -----------
  fix: convert -- pkg to - pkg for windows


  Commit: 2f98f90faa5b640815d571359919c09034a266c1
      https://github.com/ehb54/ultrascan3/commit/2f98f90faa5b640815d571359919c09034a266c1
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/bootstrap-windows.ps1

  Log Message:
  -----------
  fix: getwin


  Commit: 7249d6b2d508075f65d61b2643639c789db68d8e
      https://github.com/ehb54/ultrascan3/commit/7249d6b2d508075f65d61b2643639c789db68d8e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/bootstrap-windows.ps1

  Log Message:
  -----------
  fix: add chocolatey fallback for ci


  Commit: fd116b43987cda26a351438dcd70082a7c27ce17
      https://github.com/ehb54/ultrascan3/commit/fd116b43987cda26a351438dcd70082a7c27ce17
  Author: emre brookes <ehb54 at users.noreply.github.com>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


  Commit: 45140eeddd64e45d6b5c87061f79c9aefc3ce25e
      https://github.com/ehb54/ultrascan3/commit/45140eeddd64e45d6b5c87061f79c9aefc3ce25e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    M programs/us/revision.sh
    M scripts/build.ps1

  Log Message:
  -----------
  fix: windows CI vcpkg cache usage


  Commit: 1ec6ec52d283b6c710abe095ebcad82139a64ae3
      https://github.com/ehb54/ultrascan3/commit/1ec6ec52d283b6c710abe095ebcad82139a64ae3
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M CMakePresets.json
    M scripts/build.sh

  Log Message:
  -----------
  add: macos intel build


  Commit: 39ad33c5c781b0f007822456803df7d591795fe7
      https://github.com/ehb54/ultrascan3/commit/39ad33c5c781b0f007822456803df7d591795fe7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  fix: vcpkg CI handling


  Commit: 7fad3a4dfaa187ad4eb94554cedbe3ec6cf56773
      https://github.com/ehb54/ultrascan3/commit/7fad3a4dfaa187ad4eb94554cedbe3ec6cf56773
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_mpi_analysis/revision.sh

  Log Message:
  -----------
  fix: change revision to git_revision to be consistent with other programs


  Commit: b4417a6bfd0cfcc840668d21e88718e957734e47
      https://github.com/ehb54/ultrascan3/commit/b4417a6bfd0cfcc840668d21e88718e957734e47
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M test/utils/test_us_time_state.cpp
    M utils/libus_utils.pro
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: f0c8ede548bfb3a6f2380059dd1aacf09c6a7883
      https://github.com/ehb54/ultrascan3/commit/f0c8ede548bfb3a6f2380059dd1aacf09c6a7883
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/bootstrap-macos.sh

  Log Message:
  -----------
  fix: add missing dependencies


  Commit: 09eeb4bec49931c943f732f024f1166b882c3e3a
      https://github.com/ehb54/ultrascan3/commit/09eeb4bec49931c943f732f024f1166b882c3e3a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M test/utils/test_us_time_state.cpp
    M utils/libus_utils.pro
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2


  Commit: 51ba58286eaaa41af877ff9330d19560633e1c16
      https://github.com/ehb54/ultrascan3/commit/51ba58286eaaa41af877ff9330d19560633e1c16
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/bootstrap-macos.sh

  Log Message:
  -----------
  fix: add missing dependencies


  Commit: 21a5f4a7ad52a67040b9426ed30a082038813498
      https://github.com/ehb54/ultrascan3/commit/21a5f4a7ad52a67040b9426ed30a082038813498
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: reduce linux disk space usage


  Commit: 12b7e30a17e5c86f8e9d4960f7e8da86d67b3b4f
      https://github.com/ehb54/ultrascan3/commit/12b7e30a17e5c86f8e9d4960f7e8da86d67b3b4f
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: removed vcpkg folder creation


  Commit: ece15a944fb55077213717e00f084056004367a7
      https://github.com/ehb54/ultrascan3/commit/ece15a944fb55077213717e00f084056004367a7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinDeploy.cmake

  Log Message:
  -----------
  mod: change qt warnings an error to force build to stop


  Commit: 80474c759ff865d72c8c6043ba64d38bf98e1e15
      https://github.com/ehb54/ultrascan3/commit/80474c759ff865d72c8c6043ba64d38bf98e1e15
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: reduce to 2 cores for ubuntu


  Commit: e9f0952dea5d8bb82a866082b546997a3e457ec4
      https://github.com/ehb54/ultrascan3/commit/e9f0952dea5d8bb82a866082b546997a3e457ec4
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


  Commit: c4af75ba6a8e299d819034f87528f9d6997e469f
      https://github.com/ehb54/ultrascan3/commit/c4af75ba6a8e299d819034f87528f9d6997e469f
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 0f81d3f0d1fb567b1e570ed90147a17f49e57c1f
      https://github.com/ehb54/ultrascan3/commit/0f81d3f0d1fb567b1e570ed90147a17f49e57c1f
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    M admin/cmake/packaging/windows/WinDeploy.cmake
    R scripts/bootstrap-deps.sh
    A scripts/bootstrap-linux.sh
    M scripts/bootstrap-macos.sh
    M scripts/build.sh
    M utils/CMakeLists.txt
    M vcpkg.json

  Log Message:
  -----------
  mod: move checks to bootstrap


  Commit: 4ff50388194860753c3e8bc4d697e944ce0f1641
      https://github.com/ehb54/ultrascan3/commit/4ff50388194860753c3e8bc4d697e944ce0f1641
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2


  Commit: 82349a16124679984a45c562feb3f2583dbdb531
      https://github.com/ehb54/ultrascan3/commit/82349a16124679984a45c562feb3f2583dbdb531
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: add platform safe check


  Commit: 8a2d982f8e8906a85bfe363487622d59a1ff361e
      https://github.com/ehb54/ultrascan3/commit/8a2d982f8e8906a85bfe363487622d59a1ff361e
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 6d361b64fc8f314fe8399f028d2c79ef9d0e417b
      https://github.com/ehb54/ultrascan3/commit/6d361b64fc8f314fe8399f028d2c79ef9d0e417b
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: clean after build set


  Commit: 5b81b9c41fc973670663047afba591d6edaa898c
      https://github.com/ehb54/ultrascan3/commit/5b81b9c41fc973670663047afba591d6edaa898c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinDeploy.cmake

  Log Message:
  -----------
  fix: packaging


  Commit: 10e620037c83dddc66d518ab28e33eb36c3e3c17
      https://github.com/ehb54/ultrascan3/commit/10e620037c83dddc66d518ab28e33eb36c3e3c17
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


  Commit: 3afad49842a3c53daabf741428b683cb8e86837c
      https://github.com/ehb54/ultrascan3/commit/3afad49842a3c53daabf741428b683cb8e86837c
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: afdf12344c5555d4130fa310bf352f2c27bbdadc
      https://github.com/ehb54/ultrascan3/commit/afdf12344c5555d4130fa310bf352f2c27bbdadc
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    A buildsys/vcpkg/overlay-ports/qttools.disable/devendor-litehtml.patch
    A buildsys/vcpkg/overlay-ports/qttools.disable/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools.disable/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qttools.disable/windeployqt.debug.bat
    R buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
    R buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
    R buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
    R buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat

  Log Message:
  -----------
  test remove qttools overlay


  Commit: 691c2112f822e5f82f6f153dbb8d568663367a2c
      https://github.com/ehb54/ultrascan3/commit/691c2112f822e5f82f6f153dbb8d568663367a2c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2


  Commit: 5fbfc3b610b9edaa535c2cdde484daba5a1f6d23
      https://github.com/ehb54/ultrascan3/commit/5fbfc3b610b9edaa535c2cdde484daba5a1f6d23
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinDeploy.cmake
    A buildsys/vcpkg/overlay-ports/qt5-tools/fix-pkgconfig-qt5uiplugin-not-found.patch
    A buildsys/vcpkg/overlay-ports/qt5-tools/fix-spawnvp-argv.patch
    A buildsys/vcpkg/overlay-ports/qt5-tools/libclang.patch
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    M buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    M scripts/bootstrap-windows.ps1
    M scripts/build.ps1

  Log Message:
  -----------
  fix: restore patch for qt5-tools


  Commit: ee9314b8a10555d579148933ce5fb59dc77f25a5
      https://github.com/ehb54/ultrascan3/commit/ee9314b8a10555d579148933ce5fb59dc77f25a5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinDeploy.cmake
    M scripts/bootstrap-windows.ps1

  Log Message:
  -----------
  fix: nasm check and add supporting dlls to installation


  Commit: f9860bd8d1ac6f5c5c4a4b0dd90e3cb7f09bd131
      https://github.com/ehb54/ultrascan3/commit/f9860bd8d1ac6f5c5c4a4b0dd90e3cb7f09bd131
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M scripts/build.ps1
    M vcpkg.json

  Log Message:
  -----------
  mod: check path length is too long on qt 5


  Commit: 4365eb02a1c29a38a42fe848da39deab69e67715
      https://github.com/ehb54/ultrascan3/commit/4365eb02a1c29a38a42fe848da39deab69e67715
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    R buildsys/vcpkg/overlay-ports/qttools.disable/devendor-litehtml.patch
    R buildsys/vcpkg/overlay-ports/qttools.disable/portfile.cmake
    R buildsys/vcpkg/overlay-ports/qttools.disable/vcpkg.json
    R buildsys/vcpkg/overlay-ports/qttools.disable/windeployqt.debug.bat

  Log Message:
  -----------
  del: remove unused overlay


  Commit: efe1a2ba8b277a19ae50d1262c14239f9f9dac81
      https://github.com/ehb54/ultrascan3/commit/efe1a2ba8b277a19ae50d1262c14239f9f9dac81
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M scripts/bootstrap-linux.sh

  Log Message:
  -----------
  add: missing linux packages libsm-dev libice-dev


  Commit: 84f1faaa0819a233d3023bd3ae0d75d2ccaf6430
      https://github.com/ehb54/ultrascan3/commit/84f1faaa0819a233d3023bd3ae0d75d2ccaf6430
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    A buildsys/vcpkg/overlay-ports/mpg123/fix-arm64-no-fpu-neon64.patch
    A buildsys/vcpkg/overlay-ports/mpg123/have-fpu.diff
    A buildsys/vcpkg/overlay-ports/mpg123/pkgconfig.diff
    A buildsys/vcpkg/overlay-ports/mpg123/portfile.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/vcpkg.json

  Log Message:
  -----------
  add: port overlay for linux arm fix


  Commit: 501adedca88f7d331c3a70d62c04cc4992f86979
      https://github.com/ehb54/ultrascan3/commit/501adedca88f7d331c3a70d62c04cc4992f86979
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/macos/MacDeploy.cmake
    M admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
    A admin/cmake/packaging/macos/StageAssistantDev.cmake
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
    A buildsys/vcpkg/overlay-ports/qttools/port.data.cmake
    A buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat
    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
    M programs/us/CMakeLists.txt
    M scripts/build.sh

  Log Message:
  -----------
  add: overlay port for qttools


  Commit: e1e93704ad79bf8d43c6c4eba74a4c90b1dc1fdf
      https://github.com/ehb54/ultrascan3/commit/e1e93704ad79bf8d43c6c4eba74a4c90b1dc1fdf
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 81695e7ad3f97f7cd46fe42d8148a8911fc3fc43
      https://github.com/ehb54/ultrascan3/commit/81695e7ad3f97f7cd46fe42d8148a8911fc3fc43
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: bed8960f5d491db022be512a82491fc248abcbf9
      https://github.com/ehb54/ultrascan3/commit/bed8960f5d491db022be512a82491fc248abcbf9
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M doc/manual/CMakeLists.txt
    M doc/manual/README.md
    M doc/manual/source/conf.py
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  mod: PR comments addressed


  Commit: 5205cb5542bd366b63909189ac9691c6473fc071
      https://github.com/ehb54/ultrascan3/commit/5205cb5542bd366b63909189ac9691c6473fc071
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2


  Commit: 76e772666ba74f76a6d525444b9c0cd8f9d01e76
      https://github.com/ehb54/ultrascan3/commit/76e772666ba74f76a6d525444b9c0cd8f9d01e76
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M doc/manual/CMakeLists.txt

  Log Message:
  -----------
  fix: skip subdirectory doc/manual if hpc or documentation off


  Commit: 05b438d52cffda88429e278cae66fead57b193ec
      https://github.com/ehb54/ultrascan3/commit/05b438d52cffda88429e278cae66fead57b193ec
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M CMakePresets.json
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    R doc/manual/source/conf.py-orig.081225
    M gui/CMakeLists.txt
    M programs/us_helpdaemon/us_helpdaemon.cpp

  Log Message:
  -----------
  fix: Reformat CMakePresets.json to multi-line style; add US3_NO_DB=ON to all HPC
     presets; fix GLU elseif(UNIX) branch; drop dead Windows assistant path check.


  Commit: 21882cd1fd05a489de72b721e1e4bebaa8fb9ac5
      https://github.com/ehb54/ultrascan3/commit/21882cd1fd05a489de72b721e1e4bebaa8fb9ac5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M doc/manual/CMakeLists.txt
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  fix: pr comments


  Commit: 39a94736afc6e6b1450549833138c494fc1ff36b
      https://github.com/ehb54/ultrascan3/commit/39a94736afc6e6b1450549833138c494fc1ff36b
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M doc/manual/Makefile

  Log Message:
  -----------
  fix: make all moved to top


  Commit: 55ad77b5ea4726efff74c2e3da2b763af7b12070
      https://github.com/ehb54/ultrascan3/commit/55ad77b5ea4726efff74c2e3da2b763af7b12070
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    M doc/manual/CMakeLists.txt

  Log Message:
  -----------
  fix: presets


  Commit: 8aeda75b69a9c2d9df2af035ea7265bb93bdacef
      https://github.com/ehb54/ultrascan3/commit/8aeda75b69a9c2d9df2af035ea7265bb93bdacef
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-21 (Sat, 21 Mar 2026)

  Changed paths:
    A admin/cmake/README.md
    A admin/cmake/packaging/README.md
    A pkg/macos/README.md

  Log Message:
  -----------
  mod: readmes


  Commit: 81c3a3a5d2a743645b19098027b58ecdc429d634
      https://github.com/ehb54/ultrascan3/commit/81c3a3a5d2a743645b19098027b58ecdc429d634
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-22 (Sun, 22 Mar 2026)

  Changed paths:
    R doc/manual/source/2dsa/2dsa_adv.rst
    R doc/manual/source/2dsa/2dsa_analys.rst
    R doc/manual/source/2dsa/2dsa_main.rst
    R doc/manual/source/2dsa/index.rst
    R doc/manual/source/3d_plot.rst
    R doc/manual/source/analyte/analyte_edit.rst
    R doc/manual/source/analyte/analyte_new.rst
    R doc/manual/source/analyte/analyte_select.rst
    R doc/manual/source/analyte/analyte_settings.rst
    R doc/manual/source/analyte/index.rst
    R doc/manual/source/associations.rst
    R doc/manual/source/astfem_sim.rst
    R doc/manual/source/beckman_openauc.rst
    R doc/manual/source/buffer/buffer_edit.rst
    R doc/manual/source/buffer/buffer_new.rst
    R doc/manual/source/buffer/buffer_select.rst
    R doc/manual/source/buffer/buffer_settings.rst
    R doc/manual/source/buffer/index.rst
    R doc/manual/source/buoyancy_editor.rst
    R doc/manual/source/colorgradient.rst
    R doc/manual/source/combine_models.rst
    R doc/manual/source/common_dialogs.rst
    R doc/manual/source/components.rst
    R doc/manual/source/config.rst
    R doc/manual/source/convert.rst
    R doc/manual/source/ddist_combine.rst
    R doc/manual/source/dens_match.rst
    R doc/manual/source/dmga_init.rst
    R doc/manual/source/dmga_init_constr.rst
    R doc/manual/source/experiment/cells.rst
    R doc/manual/source/experiment/general.rst
    R doc/manual/source/experiment/import.rst
    R doc/manual/source/experiment/index.rst
    R doc/manual/source/experiment/liveupdate.rst
    R doc/manual/source/experiment/optics.rst
    R doc/manual/source/experiment/range.rst
    R doc/manual/source/experiment/rotor.rst
    R doc/manual/source/experiment/solutions.rst
    R doc/manual/source/experiment/speeds.rst
    R doc/manual/source/experiment/submit.rst
    R doc/manual/source/export_legacy.rst
    R doc/manual/source/fe_match/fe_match_adv.rst
    R doc/manual/source/fe_match/fe_match_main.rst
    R doc/manual/source/fe_match/fe_match_simulate.rst
    R doc/manual/source/fe_match/index.rst
    R doc/manual/source/fit_meniscus.rst
    R doc/manual/source/ga_initialize.rst
    R doc/manual/source/gmp/gmp.rst
    R doc/manual/source/gmp/gmp_audit_trail.rst
    R doc/manual/source/gmp/gmp_automation.rst
    R doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst
    R doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst
    R doc/manual/source/gmp/gmp_data_acquisition/index.rst
    R doc/manual/source/gmp/gmp_protocol_development.rst
    R doc/manual/source/gmp/gmp_report_generator.rst
    R doc/manual/source/gmp/gmp_signature.rst
    R doc/manual/source/gmp/index.rst
    R doc/manual/source/grid_editor.rst
    R doc/manual/source/idist_combine.rst
    R doc/manual/source/images/2dsa_3dplot.png
    R doc/manual/source/images/2dsa_advan.png
    R doc/manual/source/images/2dsa_analvv.png
    R doc/manual/source/images/2dsa_analys.png
    R doc/manual/source/images/2dsa_main-c.png
    R doc/manual/source/images/2dsa_main-o.png
    R doc/manual/source/images/2dsa_resplot.png
    R doc/manual/source/images/D20W_bar.png
    R doc/manual/source/images/MW-bar.png
    R doc/manual/source/images/RINplot.png
    R doc/manual/source/images/TINplot.png
    R doc/manual/source/images/UltraScan-logo.png
    R doc/manual/source/images/add_RIN-TIN.png
    R doc/manual/source/images/add_RIN.png
    R doc/manual/source/images/add_TIN.png
    R doc/manual/source/images/advanced_config.png
    R doc/manual/source/images/analyte_details.png
    R doc/manual/source/images/analyte_edit.png
    R doc/manual/source/images/analyte_edit_spec.png
    R doc/manual/source/images/analyte_new_sequence.png
    R doc/manual/source/images/analyte_newc.png
    R doc/manual/source/images/analyte_newd.png
    R doc/manual/source/images/analyte_newp.png
    R doc/manual/source/images/analyte_selectc.png
    R doc/manual/source/images/analyte_selectd.png
    R doc/manual/source/images/analyte_selectp.png
    R doc/manual/source/images/analyte_sequence.png
    R doc/manual/source/images/analyte_settings.png
    R doc/manual/source/images/analyte_spec-gui.png
    R doc/manual/source/images/analyte_specmenu.png
    R doc/manual/source/images/analyte_spectrum.png
    R doc/manual/source/images/analytes.png
    R doc/manual/source/images/associations.png
    R doc/manual/source/images/astfem_sim.png
    R doc/manual/source/images/bad_grid.png
    R doc/manual/source/images/beck_convert-2.png
    R doc/manual/source/images/beck_converter.png
    R doc/manual/source/images/bitmap.png
    R doc/manual/source/images/buffer_edit.png
    R doc/manual/source/images/buffer_edit_setting.png
    R doc/manual/source/images/buffer_edit_spectrum.png
    R doc/manual/source/images/buffer_info.png
    R doc/manual/source/images/buffer_manage_spectrum.png
    R doc/manual/source/images/buffer_new.png
    R doc/manual/source/images/buffer_new_spectrum.png
    R doc/manual/source/images/buffer_select.png
    R doc/manual/source/images/buffer_settings.png
    R doc/manual/source/images/buffer_spectrum.png
    R doc/manual/source/images/cfa_view-loadauc.png
    R doc/manual/source/images/cfa_view-loadraw.png
    R doc/manual/source/images/cfa_view-main.png
    R doc/manual/source/images/cfa_view-statsauc.png
    R doc/manual/source/images/cfa_view-statsraw.png
    R doc/manual/source/images/color-1.png
    R doc/manual/source/images/color-2.png
    R doc/manual/source/images/color-a.png
    R doc/manual/source/images/color-b.png
    R doc/manual/source/images/colorgrad1.png
    R doc/manual/source/images/colorgradient/col1_colgen.png
    R doc/manual/source/images/colorgradient/col1_colgen_Fe_match.png
    R doc/manual/source/images/colorgradient/col1_colgen_GA.png
    R doc/manual/source/images/colorgradient/col2_colgen.png
    R doc/manual/source/images/colorgradient/colorgrad.png
    R doc/manual/source/images/colorgradient/colorgradient_main.png
    R doc/manual/source/images/colorgradient/components.png
    R doc/manual/source/images/colorgradient/model_editor.png
    R doc/manual/source/images/combine_models-idedit.png
    R doc/manual/source/images/combine_models-save.png
    R doc/manual/source/images/combine_models.png
    R doc/manual/source/images/components.png
    R doc/manual/source/images/config.png
    R doc/manual/source/images/config1.png
    R doc/manual/source/images/config2.png
    R doc/manual/source/images/config_plot.png
    R doc/manual/source/images/convert-RIdata.png
    R doc/manual/source/images/convert-exclude.png
    R doc/manual/source/images/convert-experiment.png
    R doc/manual/source/images/convert-mwl.png
    R doc/manual/source/images/convert-seltrip.png
    R doc/manual/source/images/convert-subset.png
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  Log Message:
  -----------
  mod: removed documentation.


  Commit: f448548065ff12b1c240270de9d4827cf5f51a79
      https://github.com/ehb54/ultrascan3/commit/f448548065ff12b1c240270de9d4827cf5f51a79
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-24 (Tue, 24 Mar 2026)

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    R doc/manual/index.body
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    R doc/manual/mainstyle.css
    R doc/manual/make-docs.sh
    R doc/manual/make-html.sh
    R doc/manual/make-qdocs.sh
    R doc/manual/make-wraps.sh
    R doc/manual/manage_data.body
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    R doc/manual/select_edits.body
    R doc/manual/select_runs.body
    R doc/manual/simparams.body
    R doc/manual/somo.body
    A doc/manual/source/_static/css/custom.css
    A doc/manual/source/_static/js/language_data.js
    A doc/manual/source/_static/js/sphinx_highlight.js
    A doc/manual/source/conf.py
    A doc/manual/source/index.rst
    A doc/manual/source/requirements.txt
    R doc/manual/template.img.body
    R doc/manual/tidy.conf
    R doc/manual/time_derivative.body
    R doc/manual/ultrascan3.txt
    R doc/manual/us_buffer.body
    R doc/manual/us_edit.body
    R doc/manual/us_edit_mwl.body
    R doc/manual/us_equiltime.body
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    R doc/manual/vhw_combine.body
    R doc/manual/vhw_distrib_plot.body
    R doc/manual/vhw_enhanced.body
    R doc/manual/wrapped-images.lst
    M gui/CMakeLists.txt
    M gui/us_help.cpp
    M makeall.sh
    A pkg/macos/README.md
    A pkg/macos/component.plist
    A pkg/macos/distribution.xml.in
    A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist
    A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3
    A pkg/macos/postinstall
    A pkg/macos/preinstall
    A pkg/macos/resources/Welcome.txt.in
    A pkg/macos/resources/background.png
    A pkg/macos/ultrascan_sysctl.plist
    A pkg/macos/uninstall.sh
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us/revision.sh
    M programs/us/us.cpp
    M programs/us_helpdaemon/us_helpdaemon.cpp
    M programs/us_mpi_analysis/2dsa_worker.cpp
    M programs/us_mpi_analysis/CMakeLists.txt
    M programs/us_mpi_analysis/pcsa_worker.cpp
    M programs/us_mpi_analysis/revision.sh
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M qwtplot3d/CMakeLists.txt
    A scripts/bootstrap-linux.sh
    A scripts/bootstrap-macos.sh
    A scripts/bootstrap-windows.ps1
    A scripts/bootstrap.bat
    M scripts/build.bat
    M scripts/build.ps1
    M scripts/build.sh
    A us-build
    M utils/CMakeLists.txt
    M utils/us_memory.cpp
    M vcpkg.json

  Log Message:
  -----------
  Merge pull request #374 from ehb54/527-enhancement-sphinx-migration-2

Integrate Sphinx Document Generation


  Commit: 0a9196aea05b0dc1c6f984302c09ffefa32db302
      https://github.com/ehb54/ultrascan3/commit/0a9196aea05b0dc1c6f984302c09ffefa32db302
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-24 (Tue, 24 Mar 2026)

  Changed paths:
    M .github/workflows/bump-version.yml
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    M LICENSE.txt
    M README.manual
    M admin/cmake/GenerateVersion.cmake
    A admin/cmake/README.md
    A admin/cmake/packaging/README.md
    A admin/cmake/packaging/linux/LinuxDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcPkg.cmake
    A admin/cmake/packaging/linux/LinuxPkg.cmake
    A admin/cmake/packaging/macos/MacDeploy.cmake
    A admin/cmake/packaging/macos/MacHpcDeploy.cmake
    A admin/cmake/packaging/macos/MacHpcPkg.cmake
    A admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
    A admin/cmake/packaging/macos/MacOsPkg.cmake
    A admin/cmake/packaging/macos/StageAssistantDev.cmake
    A admin/cmake/packaging/windows/WinDeploy.cmake
    A admin/cmake/packaging/windows/WinPkg.cmake
    A admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
    M admin/cmake/toolchain.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/fix-arm64-no-fpu-neon64.patch
    A buildsys/vcpkg/overlay-ports/mpg123/have-fpu.diff
    A buildsys/vcpkg/overlay-ports/mpg123/pkgconfig.diff
    A buildsys/vcpkg/overlay-ports/mpg123/portfile.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/vcpkg.json
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
    A buildsys/vcpkg/overlay-ports/qttools/port.data.cmake
    A buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat
    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
    R doc/manual/2dsa/2dsa.body
    R doc/manual/2dsa/2dsa_advan.body
    R doc/manual/2dsa/2dsa_analvv.body
    R doc/manual/2dsa/2dsa_analys.body
    M doc/manual/CMakeLists.txt
    M doc/manual/Makefile
    M doc/manual/README.md
    R doc/manual/advanced_config.body
    R doc/manual/analytes.body
    R doc/manual/associations.body
    R doc/manual/astfem_sim.body
    R doc/manual/buffer_edit.body
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    R doc/manual/buffer_select.body
    R doc/manual/buffer_settings.body
    R doc/manual/cfa_viewer.body
    R doc/manual/colorgradient.body
    R doc/manual/combine_models.body
    R doc/manual/components.body
    R doc/manual/config.body
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    R doc/manual/experiment/experiment_cells.body
    R doc/manual/experiment/experiment_general.body
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    R doc/manual/experiment/experiment_rotor.body
    R doc/manual/experiment/experiment_solutions.body
    R doc/manual/experiment/experiment_speeds.body
    R doc/manual/experiment/experiment_upload.body
    R doc/manual/export_legacy.body
    R doc/manual/fe_match/fe_match.body
    R doc/manual/fe_match/fe_match_adv.body
    R doc/manual/fe_match/fe_match_controls.body
    R doc/manual/fe_match/fe_match_lddat.body
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    R doc/manual/fit_meniscus.body
    R doc/manual/footer.us3
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    R doc/manual/gmp/gmp.body
    R doc/manual/gmp/gmp_audit_trail.body
    R doc/manual/gmp/gmp_data_acquisition.body
    R doc/manual/gmp/gmp_data_acquisition_experiment.body
    R doc/manual/gmp/gmp_data_acquisition_gmp.body
    R doc/manual/gmp/gmp_protocol_development.body
    R doc/manual/gmp/gmp_report_generator.body
    R doc/manual/gmp/gmp_signature.body
    R doc/manual/grid_editor.body
    R doc/manual/header.us3
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    R doc/manual/images/2dsa_analys.png
    R doc/manual/images/2dsa_main-c.png
    R doc/manual/images/2dsa_main-o.png
    R doc/manual/images/2dsa_resplot.png
    R doc/manual/images/advanced_config.png
    R doc/manual/images/analyte_details.png
    R doc/manual/images/analytes.png
    R doc/manual/images/associations.png
    R doc/manual/images/astfem_sim.png
    R doc/manual/images/buffer_edit.png
    R doc/manual/images/buffer_info.png
    R doc/manual/images/buffer_new.png
    R doc/manual/images/buffer_select.png
    R doc/manual/images/buffer_settings.png
    R doc/manual/images/cfa_view-loadauc.png
    R doc/manual/images/cfa_view-loadraw.png
    R doc/manual/images/cfa_view-main.png
    R doc/manual/images/cfa_view-statsauc.png
    R doc/manual/images/cfa_view-statsraw.png
    R doc/manual/images/color-1.png
    R doc/manual/images/color-2.png
    R doc/manual/images/color-a.png
    R doc/manual/images/color-b.png
    R doc/manual/images/colorgrad.png
    R doc/manual/images/colorgrad1.png
    R doc/manual/images/combine_models-idedit.png
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    R doc/manual/images/components.png
    R doc/manual/images/config.png
    R doc/manual/images/config1.png
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    R doc/manual/images/convert-RIdata.png
    R doc/manual/images/convert-exclude.png
    R doc/manual/images/convert-experiment.png
    R doc/manual/images/convert-mwl.png
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    M programs/us_edit/us_edit.cpp
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    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_helpdaemon/us_helpdaemon.cpp
    M programs/us_mpi_analysis/2dsa_worker.cpp
    M programs/us_mpi_analysis/CMakeLists.txt
    M programs/us_mpi_analysis/pcsa_worker.cpp
    M programs/us_mpi_analysis/revision.sh
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h
    M qwtplot3d/CMakeLists.txt
    A scripts/bootstrap-linux.sh
    A scripts/bootstrap-macos.sh
    A scripts/bootstrap-windows.ps1
    A scripts/bootstrap.bat
    M scripts/build.bat
    M scripts/build.ps1
    M scripts/build.sh
    M test/utils/test_us_crypto.cpp
    A us-build
    M utils/CMakeLists.txt
    M utils/us_crypto.cpp
    M utils/us_memory.cpp
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


  Commit: a3d889c69f7012ff5840a86814780d3490d5ea2a
      https://github.com/ehb54/ultrascan3/commit/a3d889c69f7012ff5840a86814780d3490d5ea2a
  Author: emre brookes <ehb54 at users.noreply.github.com>
  Date:   2026-03-24 (Tue, 24 Mar 2026)

  Changed paths:
    M programs/us/revision.sh

  Log Message:
  -----------
  Merge pull request #377 from ehb54/ehb54-issue-670

fix revision.sh checks osx/linux compat.


  Commit: aba103e8cab9d71929941aa888ae3aae0872e049
      https://github.com/ehb54/ultrascan3/commit/aba103e8cab9d71929941aa888ae3aae0872e049
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-24 (Tue, 24 Mar 2026)

  Changed paths:
    M .github/workflows/bump-version.yml
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    M LICENSE.txt
    M README.manual
    M admin/cmake/GenerateVersion.cmake
    A admin/cmake/README.md
    A admin/cmake/packaging/README.md
    A admin/cmake/packaging/linux/LinuxDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcPkg.cmake
    A admin/cmake/packaging/linux/LinuxPkg.cmake
    A admin/cmake/packaging/macos/MacDeploy.cmake
    A admin/cmake/packaging/macos/MacHpcDeploy.cmake
    A admin/cmake/packaging/macos/MacHpcPkg.cmake
    A admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
    A admin/cmake/packaging/macos/MacOsPkg.cmake
    A admin/cmake/packaging/macos/StageAssistantDev.cmake
    A admin/cmake/packaging/windows/WinDeploy.cmake
    A admin/cmake/packaging/windows/WinPkg.cmake
    A admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
    M admin/cmake/toolchain.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/fix-arm64-no-fpu-neon64.patch
    A buildsys/vcpkg/overlay-ports/mpg123/have-fpu.diff
    A buildsys/vcpkg/overlay-ports/mpg123/pkgconfig.diff
    A buildsys/vcpkg/overlay-ports/mpg123/portfile.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/vcpkg.json
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
    A buildsys/vcpkg/overlay-ports/qttools/port.data.cmake
    A buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat
    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
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    R doc/manual/images/pcsa_3dplot.png
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    R doc/manual/images/pcsa_resplot.png
    R doc/manual/images/pcsa_rpscan-auto.png
    R doc/manual/images/pcsa_rpscan-select.png
    R doc/manual/images/predict1.png
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    R doc/manual/index.body
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    R doc/manual/load/load_model_dis-MID.body
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    R doc/manual/load/load_noise.body
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    R doc/manual/mainstyle.css
    R doc/manual/make-docs.sh
    R doc/manual/make-html.sh
    R doc/manual/make-qdocs.sh
    R doc/manual/make-wraps.sh
    R doc/manual/manage_data.body
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    R doc/manual/manage_data_thelp.body
    R doc/manual/manual.qhcp
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    R doc/manual/pcsa.body
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    R doc/manual/select_edits.body
    R doc/manual/select_runs.body
    R doc/manual/simparams.body
    R doc/manual/somo.body
    A doc/manual/source/_static/css/custom.css
    A doc/manual/source/_static/js/language_data.js
    A doc/manual/source/_static/js/sphinx_highlight.js
    A doc/manual/source/conf.py
    A doc/manual/source/index.rst
    A doc/manual/source/requirements.txt
    R doc/manual/template.img.body
    R doc/manual/tidy.conf
    R doc/manual/time_derivative.body
    R doc/manual/ultrascan3.txt
    R doc/manual/us_buffer.body
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    R doc/manual/vhw_combine.body
    R doc/manual/vhw_distrib_plot.body
    R doc/manual/vhw_enhanced.body
    R doc/manual/wrapped-images.lst
    M gui/CMakeLists.txt
    M gui/us_help.cpp
    M makeall.sh
    A pkg/macos/README.md
    A pkg/macos/component.plist
    A pkg/macos/distribution.xml.in
    A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist
    A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3
    A pkg/macos/postinstall
    A pkg/macos/preinstall
    A pkg/macos/resources/Welcome.txt.in
    A pkg/macos/resources/background.png
    A pkg/macos/ultrascan_sysctl.plist
    A pkg/macos/uninstall.sh
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us/revision.sh
    M programs/us/us.cpp
    M programs/us_helpdaemon/us_helpdaemon.cpp
    M programs/us_mpi_analysis/2dsa_worker.cpp
    M programs/us_mpi_analysis/CMakeLists.txt
    M programs/us_mpi_analysis/pcsa_worker.cpp
    M programs/us_mpi_analysis/revision.sh
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M qwtplot3d/CMakeLists.txt
    A scripts/bootstrap-linux.sh
    A scripts/bootstrap-macos.sh
    A scripts/bootstrap-windows.ps1
    A scripts/bootstrap.bat
    M scripts/build.bat
    M scripts/build.ps1
    M scripts/build.sh
    A us-build
    M utils/CMakeLists.txt
    M utils/us_memory.cpp
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_solution_analyte


Compare: https://github.com/ehb54/ultrascan3/compare/ad1ceab5b0c5...aba103e8cab9

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From noreply at github.com  Tue Mar 24 15:49:25 2026
From: noreply at github.com (Lukas Dobler)
Date: Tue, 24 Mar 2026 14:49:25 -0700
Subject: [us-commits] [ehb54/ultrascan3] 254289: ACAB doubled
Message-ID: <ehb54/ultrascan3/push/refs/heads/lukas/us_astfem_sim_bfe_fix/fb3b2b-aece3e@github.com>

  Branch: refs/heads/lukas/us_astfem_sim_bfe_fix
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 2542899201e17dd085de687f6fdfe671fa123bdb
      https://github.com/ehb54/ultrascan3/commit/2542899201e17dd085de687f6fdfe671fa123bdb
  Author: Haben Gabir <haben.gabir at uleth.ca>
  Date:   2026-01-22 (Thu, 22 Jan 2026)

  Changed paths:
    A doc/manual/source/#Makefile#
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    A doc/manual/source/2dsa/2dsa_analys.rst
    A doc/manual/source/2dsa/2dsa_main.rst
    A doc/manual/source/2dsa/index.rst
    A doc/manual/source/3d_plot.rst
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    A doc/manual/source/_static/images/add_TIN.png
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    A doc/manual/source/vhw_enhanced.rst
    A doc/manual/source/xpn_viewer.rst

  Log Message:
  -----------
  ACAB doubled


  Commit: 8617cadc6147eda447864b6626622e9bffa4128e
      https://github.com/ehb54/ultrascan3/commit/8617cadc6147eda447864b6626622e9bffa4128e
  Author: Haben Gabir <haben.gabir at uleth.ca>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
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    M doc/manual/source/buoyancy_editor.rst
    M doc/manual/source/dmga_init.rst
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    M doc/manual/source/gmp/gmp_automation.rst
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    M doc/manual/source/us_buoyancy.rst
    M doc/manual/source/xpn_viewer.rst

  Log Message:
  -----------
  WALICAFB


  Commit: 779bf5e32b16d7eddc415ecc2fe90709ac0026b9
      https://github.com/ehb54/ultrascan3/commit/779bf5e32b16d7eddc415ecc2fe90709ac0026b9
  Author: Haben Gabir <haben.gabir at uleth.ca>
  Date:   2026-02-20 (Fri, 20 Feb 2026)

  Changed paths:
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    M admin/cmake/triplets/x64-osx-dynamic.cmake
    R alpha/srcdevel
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    M gui/us_analysis_base2.cpp
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    M gui/us_csv_loader.cpp
    M gui/us_model_loader.cpp
    M gui/us_plot.cpp
    M gui/us_report_gui.cpp
    M gui/us_report_gui.h
    M programs/CMakeLists.txt
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    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_2dsa/us_2dsa.h
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_analysis_profile/us_analysis_profile.h
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
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    M programs/us_dcdt/us_dcdt.cpp
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    M programs/us_experiment/us_proto_ranges.cpp
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    M programs/us_fit_meniscus/us_fit_meniscus.h
    M programs/us_integral/us_integral.cpp
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    M programs/us_pcsa/us_pcsa.cpp
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    M scripts/build.sh
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    M utils/us_csv_data.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/main' into haben-Dev


  Commit: 7bf106993a8f72d94033f56ec908772b1087c0ef
      https://github.com/ehb54/ultrascan3/commit/7bf106993a8f72d94033f56ec908772b1087c0ef
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
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    M README.manual
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    A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat
    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
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    R doc/manual/images/manage_data_pasw.png
    R doc/manual/images/manage_data_sync.png
    R doc/manual/images/manage_data_thelp-1.png
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    R doc/manual/images/master-pw.png
    R doc/manual/images/model_editor.png
    R doc/manual/images/mwlr_view_3dplot.png
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    R doc/manual/images/somo/somo_icon.png
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    R doc/manual/images/ultra.xpm
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    R doc/manual/images/us_buffer.png
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    R doc/manual/index.body
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    R doc/manual/mainstyle.css
    R doc/manual/make-docs.sh
    R doc/manual/make-html.sh
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    R doc/manual/make-wraps.sh
    R doc/manual/manage_data.body
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    R doc/manual/simparams.body
    R doc/manual/somo.body
    R doc/manual/source/#Makefile#
    M doc/manual/source/conf.py
    R doc/manual/source/make.bat
    M doc/manual/source/requirements.txt
    R doc/manual/template.img.body
    R doc/manual/tidy.conf
    R doc/manual/time_derivative.body
    R doc/manual/ultrascan3.txt
    R doc/manual/us_buffer.body
    R doc/manual/us_edit.body
    R doc/manual/us_edit_mwl.body
    R doc/manual/us_equiltime.body
    R doc/manual/us_fds_filemanager.body
    R doc/manual/us_investigator.body
    R doc/manual/us_modelmetrics.body
    R doc/manual/us_project.body
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    R doc/manual/vhw_combine.body
    R doc/manual/vhw_distrib_plot.body
    R doc/manual/vhw_enhanced.body
    R doc/manual/wrapped-images.lst
    M gui/us_help.cpp
    M makeall.sh
    M scripts/build.sh
    R vcpkg
    M vcpkg.json

  Log Message:
  -----------
  mod: delete legacy help, integrate sphinx help


  Commit: 3d08b0b47f4e2317e53a69e11dc522f164182ec7
      https://github.com/ehb54/ultrascan3/commit/3d08b0b47f4e2317e53a69e11dc522f164182ec7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake

  Log Message:
  -----------
  mod: release only build for macos


  Commit: 7d351ae823d28a24be8d1406165cb8c4887fb1e7
      https://github.com/ehb54/ultrascan3/commit/7d351ae823d28a24be8d1406165cb8c4887fb1e7
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-21 (Sat, 21 Feb 2026)

  Changed paths:
    M gui/us_report_gui.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_experiment/us_proto_ranges.cpp

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 534da76a2eb5090416dc3e2fa4416db272ac9b91
      https://github.com/ehb54/ultrascan3/commit/534da76a2eb5090416dc3e2fa4416db272ac9b91
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-24 (Tue, 24 Feb 2026)

  Changed paths:
    M programs/us_com_project/us_com_project_gui.cpp
    M programs/us_com_project/us_com_project_gui.h
    M programs/us_experiment/us_experiment_gui_optima.h

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: d28e726d4e40aae7be0f55ed03c1e7fe45e36d00
      https://github.com/ehb54/ultrascan3/commit/d28e726d4e40aae7be0f55ed03c1e7fe45e36d00
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-24 (Tue, 24 Feb 2026)

  Changed paths:
    M doc/manual/source/colorgradient.rst
    M doc/manual/source/conf.py
    M doc/manual/source/config.rst
    M doc/manual/source/experiment/range.rst
    M doc/manual/source/export_legacy.rst
    M doc/manual/source/fe_match/fe_match_main.rst
    M doc/manual/source/fe_match/fe_match_simulate.rst
    M doc/manual/source/ga_initialize.rst
    M doc/manual/source/grid_editor.rst
    M doc/manual/source/manage_data.rst
    M doc/manual/source/mwl_spectra.rst
    M doc/manual/source/mwlr_viewer.rst
    M doc/manual/source/pcsa/pcsa_analys.rst
    M doc/manual/source/requirements.txt
    M doc/manual/source/us_project.rst
    M doc/manual/source/vhw_combine.rst

  Log Message:
  -----------
  mod: migrate to sphinx-design from subfigure


  Commit: 8318d566a89cb3e06093e1d79d56d11d3488103a
      https://github.com/ehb54/ultrascan3/commit/8318d566a89cb3e06093e1d79d56d11d3488103a
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    R admin/cmake/toolchain-macos.cmake
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M programs/us/CMakeLists.txt
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 89b7691a714d92e99e335e23378d225aa3b1b536
      https://github.com/ehb54/ultrascan3/commit/89b7691a714d92e99e335e23378d225aa3b1b536
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M programs/us/revision.sh

  Log Message:
  -----------
  fix revision.sh checks osx/linux compat.


  Commit: 572bb723ed591be3225aacbdbc387c93c17ca792
      https://github.com/ehb54/ultrascan3/commit/572bb723ed591be3225aacbdbc387c93c17ca792
  Author: emre brookes <ehb54 at users.noreply.github.com>
  Date:   2026-02-26 (Thu, 26 Feb 2026)

  Changed paths:
    M gui/us_spectrodata.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


  Commit: 85100ef73842bc75a8f210f7b9038301adae82db
      https://github.com/ehb54/ultrascan3/commit/85100ef73842bc75a8f210f7b9038301adae82db
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-02-27 (Fri, 27 Feb 2026)

  Changed paths:
    M gui/us_spectrodata.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 7f63285b165bc88c2a317f9f368082e0d24d8861
      https://github.com/ehb54/ultrascan3/commit/7f63285b165bc88c2a317f9f368082e0d24d8861
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-28 (Sat, 28 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    A admin/cmake/MacDeploy.cmake
    R buildsys/vcpkg/overlay-ports/qt5-tools/fix-pkgconfig-qt5uiplugin-not-found.patch
    R buildsys/vcpkg/overlay-ports/qt5-tools/fix-spawnvp-argv.patch
    R buildsys/vcpkg/overlay-ports/qt5-tools/libclang.patch
    R buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    R buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    M doc/manual/CMakeLists.txt
    A doc/manual/StageAssistant.cmake
    M doc/manual/source/mwl_spectra.rst
    M gui/CMakeLists.txt
    M gui/us_help.cpp
    M programs/us_helpdaemon/us_helpdaemon.cpp
    M qwtplot3d/CMakeLists.txt
    M scripts/build.sh
    M vcpkg.json

  Log Message:
  -----------
  fix: fix qt help search and implement dmg


  Commit: 8e3d67b30d1a4eaf6faf0d18d80a835288ee5ae7
      https://github.com/ehb54/ultrascan3/commit/8e3d67b30d1a4eaf6faf0d18d80a835288ee5ae7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-02-28 (Sat, 28 Feb 2026)

  Changed paths:
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    R admin/cmake/toolchain-macos.cmake
    A admin/cmake/toolchain.cmake
    A admin/cmake/triplets/arm64-linux.cmake
    A admin/cmake/triplets/arm64-windows.cmake
    A etc/icons/make-icons.sh
    A etc/icons/us3-icon-master-512.png
    M etc/us3-icon-128x128.ico
    M etc/us3-icon-128x128.png
    M etc/us3-icon-32x32.png
    M etc/us3-icon-48x48.ico
    M etc/us3-icon-48x48.png
    M etc/us3-icon.icns
    M gui/CMakeLists.txt
    M gui/images/us3-icon-128x128.png
    M gui/images/us3-icon-16x16.png
    M gui/images/us3-icon-256x256.png
    M gui/images/us3-icon-32x32.png
    M gui/images/us3-icon-48x48.png
    M gui/images/us3-icon-512x512.png
    M gui/images/us3-icon-64x64.png
    M gui/us_spectrodata.h
    M programs/us/CMakeLists.txt
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_ddist_combine/us_ddist_combine.h
    M programs/us_ga_init/us_ga_init.cpp
    M programs/us_ga_init/us_ga_init.h
    M programs/us_ga_init/us_solutedata.cpp
    M programs/us_integral/us_integral.cpp
    M programs/us_integral/us_integral.h
    M programs/us_modelmetrics/us_modelmetrics.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
    M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
    M qwtplot3d/include/qwt3d_openglhelper.h
    A scripts/build.bat
    A scripts/build.ps1
    M scripts/build.sh
    M vcpkg.json

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2

# Conflicts:
#	.gitignore
#	scripts/build.sh


  Commit: ef3356b450a93ec526f92ee27da0a9bfcfa9c04a
      https://github.com/ehb54/ultrascan3/commit/ef3356b450a93ec526f92ee27da0a9bfcfa9c04a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-01 (Sun, 01 Mar 2026)

  Changed paths:
    M LICENSE.txt

  Log Message:
  -----------
  fix: text was original utf-8 so quotes became questions marks with ascii tool. Changed ? to ascii quotes.


  Commit: 82c2dc2269b90376cf1f69ca3f88b4bee38c641e
      https://github.com/ehb54/ultrascan3/commit/82c2dc2269b90376cf1f69ca3f88b4bee38c641e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    R admin/cmake/MacDeploy.cmake
    A admin/cmake/packaging/macos/MacDeploy.cmake
    A admin/cmake/packaging/macos/MacOsPkg.cmake
    A pkg/macos/component.plist
    A pkg/macos/distribution.xml.in
    A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist
    A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3
    A pkg/macos/postinstall
    A pkg/macos/preinstall
    A pkg/macos/resources/Welcome.txt.in
    A pkg/macos/resources/background.png
    A pkg/macos/ultrascan_sysctl.plist
    A pkg/macos/uninstall.sh
    M scripts/build.sh

  Log Message:
  -----------
  add: launcher and packaging step


  Commit: 88ef4e481d1b4ea751d997b156e3782f1befce93
      https://github.com/ehb54/ultrascan3/commit/88ef4e481d1b4ea751d997b156e3782f1befce93
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-02 (Mon, 02 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    M admin/cmake/packaging/macos/MacDeploy.cmake
    M admin/cmake/toolchain.cmake
    M doc/manual/CMakeLists.txt
    M doc/manual/StageAssistant.cmake

  Log Message:
  -----------
  add: working qt6 build and install


  Commit: 04583d8a1b0bcf01875f31b93a12343610284126
      https://github.com/ehb54/ultrascan3/commit/04583d8a1b0bcf01875f31b93a12343610284126
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    A admin/cmake/packaging/windows/WinDeploy.cmake
    A admin/cmake/packaging/windows/WinPkg.cmake

  Log Message:
  -----------
  add: windows installer


  Commit: 20b958cec1d253988daedd88a2fec65efd28448d
      https://github.com/ehb54/ultrascan3/commit/20b958cec1d253988daedd88a2fec65efd28448d
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  add: pkg command to build.ps1


  Commit: 2698e05dd320a374785cab43ed05a52db3c5c3a7
      https://github.com/ehb54/ultrascan3/commit/2698e05dd320a374785cab43ed05a52db3c5c3a7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinPkg.cmake
    M scripts/build.ps1

  Log Message:
  -----------
  fix: missing programs in installer package


  Commit: 499648d1ea27751d008981e0d9f1447cfbef7072
      https://github.com/ehb54/ultrascan3/commit/499648d1ea27751d008981e0d9f1447cfbef7072
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-04 (Wed, 04 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M scripts/build.ps1

  Log Message:
  -----------
  fix: missing sphinx on windows build


  Commit: b2c2afd33a8ed941e547021628bcb32abea1675a
      https://github.com/ehb54/ultrascan3/commit/b2c2afd33a8ed941e547021628bcb32abea1675a
  Author: emre brookes <ehb54 at users.noreply.github.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M utils/libus_utils.pro
    M utils/us_crypto.cpp
    M utils/us_crypto.h

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


  Commit: 6a9245189a1804e4557df78035f6f4401a5883ea
      https://github.com/ehb54/ultrascan3/commit/6a9245189a1804e4557df78035f6f4401a5883ea
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-05 (Thu, 05 Mar 2026)

  Changed paths:
    M doc/manual/Makefile
    M doc/manual/source/2dsa/2dsa_adv.rst
    M doc/manual/source/2dsa/2dsa_analys.rst
    M doc/manual/source/2dsa/2dsa_main.rst
    M doc/manual/source/2dsa/index.rst
    M doc/manual/source/3d_plot.rst
    R doc/manual/source/_static/custom.css
    R doc/manual/source/_static/images/2dsa_3dplot.png
    R doc/manual/source/_static/images/2dsa_advan.png
    R doc/manual/source/_static/images/2dsa_analvv.png
    R doc/manual/source/_static/images/2dsa_analys.png
    R doc/manual/source/_static/images/2dsa_main-c.png
    R doc/manual/source/_static/images/2dsa_main-o.png
    R doc/manual/source/_static/images/2dsa_resplot.png
    R doc/manual/source/_static/images/D20W_bar.png
    R doc/manual/source/_static/images/MW-bar.png
    R doc/manual/source/_static/images/RINplot.png
    R doc/manual/source/_static/images/TINplot.png
    R doc/manual/source/_static/images/UltraScan-logo.png
    R doc/manual/source/_static/images/add_RIN-TIN.png
    R doc/manual/source/_static/images/add_RIN.png
    R doc/manual/source/_static/images/add_TIN.png
    R doc/manual/source/_static/images/advanced_config.png
    R doc/manual/source/_static/images/analyte_details.png
    R doc/manual/source/_static/images/analyte_edit.png
    R doc/manual/source/_static/images/analyte_edit_spec.png
    R doc/manual/source/_static/images/analyte_new_sequence.png
    R doc/manual/source/_static/images/analyte_newc.png
    R doc/manual/source/_static/images/analyte_newd.png
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    R doc/manual/source/_static/images/analyte_selectc.png
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    R doc/manual/source/_static/images/analyte_selectp.png
    R doc/manual/source/_static/images/analyte_sequence.png
    R doc/manual/source/_static/images/analyte_settings.png
    R doc/manual/source/_static/images/analyte_spec-gui.png
    R doc/manual/source/_static/images/analyte_specmenu.png
    R doc/manual/source/_static/images/analyte_spectrum.png
    R doc/manual/source/_static/images/analytes.png
    R doc/manual/source/_static/images/associations.png
    R doc/manual/source/_static/images/astfem_sim.png
    R doc/manual/source/_static/images/bad_grid.png
    R doc/manual/source/_static/images/beck_convert-2.png
    R doc/manual/source/_static/images/beck_converter.png
    R doc/manual/source/_static/images/bitmap.png
    R doc/manual/source/_static/images/buffer_edit.png
    R doc/manual/source/_static/images/buffer_edit_setting.png
    R doc/manual/source/_static/images/buffer_edit_spectrum.png
    R doc/manual/source/_static/images/buffer_info.png
    R doc/manual/source/_static/images/buffer_manage_spectrum.png
    R doc/manual/source/_static/images/buffer_new.png
    R doc/manual/source/_static/images/buffer_new_spectrum.png
    R doc/manual/source/_static/images/buffer_select.png
    R doc/manual/source/_static/images/buffer_settings.png
    R doc/manual/source/_static/images/buffer_spectrum.png
    R doc/manual/source/_static/images/cfa_view-loadauc.png
    R doc/manual/source/_static/images/cfa_view-loadraw.png
    R doc/manual/source/_static/images/cfa_view-main.png
    R doc/manual/source/_static/images/cfa_view-statsauc.png
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    R doc/manual/source/_static/images/color-1.png
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    R doc/manual/source/_static/images/color-a.png
    R doc/manual/source/_static/images/color-b.png
    R doc/manual/source/_static/images/colorgrad1.png
    R doc/manual/source/_static/images/colorgradient/col1_colgen.png
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    R doc/manual/source/_static/images/colorgradient/col1_colgen_GA.png
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    R doc/manual/source/_static/images/colorgradient/colorgrad.png
    R doc/manual/source/_static/images/colorgradient/colorgradient_main.png
    R doc/manual/source/_static/images/colorgradient/components.png
    R doc/manual/source/_static/images/colorgradient/model_editor.png
    R doc/manual/source/_static/images/combine_models-idedit.png
    R doc/manual/source/_static/images/combine_models-save.png
    R doc/manual/source/_static/images/combine_models.png
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    R doc/manual/source/_static/images/config1.png
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    R doc/manual/source/_static/images/config_plot.png
    R doc/manual/source/_static/images/convert-RIdata.png
    R doc/manual/source/_static/images/convert-exclude.png
    R doc/manual/source/_static/images/convert-experiment.png
    R doc/manual/source/_static/images/convert-mwl.png
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    A doc/manual/source/images/rotor-add.png
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    A doc/manual/source/images/zvalue_eq.png
    M doc/manual/source/index.rst
    M doc/manual/source/manage_data.rst
    M doc/manual/source/model_editor.rst
    M doc/manual/source/mwl_spectra.rst
    M doc/manual/source/mwlr_viewer.rst
    M doc/manual/source/pcsa/index.rst
    M doc/manual/source/pcsa/pcsa.rst
    M doc/manual/source/pcsa/pcsa_adv.rst
    M doc/manual/source/pcsa/pcsa_analys.rst
    M doc/manual/source/pcsa/pcsa_mlines.rst
    M doc/manual/source/pcsa/pcsa_results.rst
    M doc/manual/source/pcsa/pcsa_rpscan.rst
    M doc/manual/source/predict1.rst
    M doc/manual/source/predict2.rst
    M doc/manual/source/pseudo3d.rst
    M doc/manual/source/register.rst
    M doc/manual/source/reporter.rst
    M doc/manual/source/requirements.txt
    M doc/manual/source/rmsd_query.rst
    M doc/manual/source/rotor.rst
    M doc/manual/source/rotor_calibration.rst
    M doc/manual/source/run_details.rst
    M doc/manual/source/sassoc.rst
    M doc/manual/source/second_moment.rst
    M doc/manual/source/simparams.rst
    M doc/manual/source/solutions/index.rst
    M doc/manual/source/solutions/solution_edit.rst
    M doc/manual/source/solutions/solution_new.rst
    M doc/manual/source/solutions/solution_select.rst
    M doc/manual/source/solutions/solution_settings.rst
    M doc/manual/source/temp.txt
    M doc/manual/source/time_derivative.rst
    M doc/manual/source/tmst_viewer.rst
    M doc/manual/source/us_buoyancy.rst
    M doc/manual/source/us_edit.rst
    M doc/manual/source/us_equiltime.rst
    M doc/manual/source/us_extinction.rst
    M doc/manual/source/us_fds_filemanager.rst
    M doc/manual/source/us_investigator.rst
    M doc/manual/source/us_modelmetrics.rst
    M doc/manual/source/us_project.rst
    M doc/manual/source/us_spectrum.rst
    M doc/manual/source/vhw_combine.rst
    M doc/manual/source/vhw_distrib_plot.rst
    M doc/manual/source/vhw_enhanced.rst
    M doc/manual/source/xpn_viewer.rst

  Log Message:
  -----------
  fix: change qthelp url to use manual instead of doc, use right project structure for images and update links


  Commit: b33c9b1cddd853e103542e10c4328830fc59e944
      https://github.com/ehb54/ultrascan3/commit/b33c9b1cddd853e103542e10c4328830fc59e944
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    A admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
    M admin/cmake/packaging/windows/WinDeploy.cmake
    A admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
    M doc/manual/CMakeLists.txt
    R doc/manual/StageAssistant.cmake
    M programs/us/CMakeLists.txt
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  mod: windows and macos qt assistant fix


  Commit: adb74a9f1e5a1e238c264228544137f56a4125b5
      https://github.com/ehb54/ultrascan3/commit/adb74a9f1e5a1e238c264228544137f56a4125b5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  fix: builddir set at the beginning


  Commit: cea2ea0e77baf6dbcc9097b3062ede36ca70f800
      https://github.com/ehb54/ultrascan3/commit/cea2ea0e77baf6dbcc9097b3062ede36ca70f800
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M doc/manual/CMakeLists.txt
    M scripts/build.ps1

  Log Message:
  -----------
  fix: windows path issues


  Commit: 99a443309500f6d44fde4d4ba640770dfadeec24
      https://github.com/ehb54/ultrascan3/commit/99a443309500f6d44fde4d4ba640770dfadeec24
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-06 (Fri, 06 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
    M doc/manual/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us_helpdaemon/us_helpdaemon.cpp

  Log Message:
  -----------
  fix: windows missing dll


  Commit: 399ad6ee7636d4885c37adff02b723d1e6af48c9
      https://github.com/ehb54/ultrascan3/commit/399ad6ee7636d4885c37adff02b723d1e6af48c9
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    A admin/cmake/packaging/linux/LinuxDeploy.cmake
    A admin/cmake/packaging/linux/LinuxPkg.cmake
    M scripts/build.sh
    M utils/CMakeLists.txt

  Log Message:
  -----------
  add: linux cmake packaging


  Commit: c3215226c1e826bd7c620115a98fe3694cfe771e
      https://github.com/ehb54/ultrascan3/commit/c3215226c1e826bd7c620115a98fe3694cfe771e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.sh
    M utils/us_memory.cpp

  Log Message:
  -----------
  fix: cross platform page size


  Commit: 16d1f75e51f11ad87c8f18b11e0a8a2bb755ea44
      https://github.com/ehb54/ultrascan3/commit/16d1f75e51f11ad87c8f18b11e0a8a2bb755ea44
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M admin/cmake/packaging/linux/LinuxDeploy.cmake
    M scripts/build.ps1
    M scripts/build.sh
    M vcpkg.json

  Log Message:
  -----------
  fix: assistant on linux


  Commit: 5ab554ce68ae411774740695115c51b480df8c8a
      https://github.com/ehb54/ultrascan3/commit/5ab554ce68ae411774740695115c51b480df8c8a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  fix: vcpkg cache clear


  Commit: a8b6e9963d8ed447dc737af6b4e3b69c3894945f
      https://github.com/ehb54/ultrascan3/commit/a8b6e9963d8ed447dc737af6b4e3b69c3894945f
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  fix: vcpkg cache clear fix


  Commit: 19f656eb532b2218880402623455153763d66d50
      https://github.com/ehb54/ultrascan3/commit/19f656eb532b2218880402623455153763d66d50
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt

  Log Message:
  -----------
  fix: assistant now copied to bin on dev build


  Commit: 75e0dc23de6fbdd330b322115c640d973e916d02
      https://github.com/ehb54/ultrascan3/commit/75e0dc23de6fbdd330b322115c640d973e916d02
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt

  Log Message:
  -----------
  fix: assistant find update


  Commit: 57f162e692e1a548bb426454e7e768e6f68b1bc4
      https://github.com/ehb54/ultrascan3/commit/57f162e692e1a548bb426454e7e768e6f68b1bc4
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M programs/us/us.cpp

  Log Message:
  -----------
  fix: program path issue


  Commit: 4700970e14e8ef1bf44b3fe91efd8dbcd15ba544
      https://github.com/ehb54/ultrascan3/commit/4700970e14e8ef1bf44b3fe91efd8dbcd15ba544
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt

  Log Message:
  -----------
  fix: assistant not found


  Commit: 14d6c7e63b928fb3a73559fdafa9426502eda98c
      https://github.com/ehb54/ultrascan3/commit/14d6c7e63b928fb3a73559fdafa9426502eda98c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  fix: guard specific macos required tools


  Commit: 1c6be4ed0464373db7a5a1a6a780f17bc12dbcf5
      https://github.com/ehb54/ultrascan3/commit/1c6be4ed0464373db7a5a1a6a780f17bc12dbcf5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/linux/LinuxDeploy.cmake

  Log Message:
  -----------
  fix: missing library in pkg


  Commit: 216860fe02c9358e021e6a54b84aa2aa0e462a99
      https://github.com/ehb54/ultrascan3/commit/216860fe02c9358e021e6a54b84aa2aa0e462a99
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  fix: rcc error


  Commit: be038ad56e172897c3f18b8a1319fced62a708a0
      https://github.com/ehb54/ultrascan3/commit/be038ad56e172897c3f18b8a1319fced62a708a0
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M admin/cmake/packaging/linux/LinuxDeploy.cmake

  Log Message:
  -----------
  fix: update plugin directory


  Commit: 87c38bbe59db529cf02b7887c7bfe57ebc8e62da
      https://github.com/ehb54/ultrascan3/commit/87c38bbe59db529cf02b7887c7bfe57ebc8e62da
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-07 (Sat, 07 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/linux/LinuxDeploy.cmake

  Log Message:
  -----------
  add: readme


  Commit: f4323bc883bb8996c6e627bfb9b8295063ef176f
      https://github.com/ehb54/ultrascan3/commit/f4323bc883bb8996c6e627bfb9b8295063ef176f
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    M admin/cmake/GenerateVersion.cmake
    A admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcPkg.cmake
    A admin/cmake/packaging/macos/MacHpcDeploy.cmake
    A admin/cmake/packaging/macos/MacHpcPkg.cmake
    M programs/CMakeLists.txt
    M programs/us_mpi_analysis/2dsa_worker.cpp
    M programs/us_mpi_analysis/CMakeLists.txt
    M programs/us_mpi_analysis/pcsa_worker.cpp
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M scripts/build.sh

  Log Message:
  -----------
  fix: hpc build


  Commit: c515903ce23bec6067e47ed10ae663518f3de230
      https://github.com/ehb54/ultrascan3/commit/c515903ce23bec6067e47ed10ae663518f3de230
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  mod: use all cores with CI runners


  Commit: 7a8a012754d242634bca20501e1a1c94be231d6c
      https://github.com/ehb54/ultrascan3/commit/7a8a012754d242634bca20501e1a1c94be231d6c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M CMakePresets.json
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  fix: CI runners and hpc build


  Commit: 5277352caa620430b2bf8a580f9f10d43218d930
      https://github.com/ehb54/ultrascan3/commit/5277352caa620430b2bf8a580f9f10d43218d930
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  fix: not all dependencies found


  Commit: 60b1b16425fcda080aea3bfac20f1abad9e8bc32
      https://github.com/ehb54/ultrascan3/commit/60b1b16425fcda080aea3bfac20f1abad9e8bc32
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-08 (Sun, 08 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  fix: dependenies added


  Commit: 3b29d9afdd3d29c7e33af7f0b989ccf1c642bc8c
      https://github.com/ehb54/ultrascan3/commit/3b29d9afdd3d29c7e33af7f0b989ccf1c642bc8c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    A scripts/bootstrap-deps.sh
    A scripts/bootstrap-macos.sh
    A scripts/bootstrap-windows.ps1
    A scripts/bootstrap.bat
    M scripts/build.ps1
    M scripts/build.sh

  Log Message:
  -----------
  fix: bootstrap deps


  Commit: 4975707ad3f001539ceeea7d716043118c23d07a
      https://github.com/ehb54/ultrascan3/commit/4975707ad3f001539ceeea7d716043118c23d07a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    A buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    M scripts/bootstrap-deps.sh

  Log Message:
  -----------
  fix: qt5 tools overlay


  Commit: e7e0613e5d7d234f835e4e9490416e0a7f5b9803
      https://github.com/ehb54/ultrascan3/commit/e7e0613e5d7d234f835e4e9490416e0a7f5b9803
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/bootstrap-deps.sh
    M scripts/bootstrap-macos.sh
    M scripts/build.sh
    A us-build

  Log Message:
  -----------
  add: bash wrapper


  Commit: b93b52b3acb64a650854a16f3983473f49becee9
      https://github.com/ehb54/ultrascan3/commit/b93b52b3acb64a650854a16f3983473f49becee9
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  mod: make profile positional for powershell


  Commit: dfec7b06f5af8e9ad31d7b4c682197a103bd5fb1
      https://github.com/ehb54/ultrascan3/commit/dfec7b06f5af8e9ad31d7b4c682197a103bd5fb1
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/bootstrap-windows.ps1
    M scripts/build.bat

  Log Message:
  -----------
  fix: convert -- pkg to - pkg for windows


  Commit: 2f98f90faa5b640815d571359919c09034a266c1
      https://github.com/ehb54/ultrascan3/commit/2f98f90faa5b640815d571359919c09034a266c1
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/bootstrap-windows.ps1

  Log Message:
  -----------
  fix: getwin


  Commit: 7249d6b2d508075f65d61b2643639c789db68d8e
      https://github.com/ehb54/ultrascan3/commit/7249d6b2d508075f65d61b2643639c789db68d8e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-09 (Mon, 09 Mar 2026)

  Changed paths:
    M scripts/bootstrap-windows.ps1

  Log Message:
  -----------
  fix: add chocolatey fallback for ci


  Commit: fd116b43987cda26a351438dcd70082a7c27ce17
      https://github.com/ehb54/ultrascan3/commit/fd116b43987cda26a351438dcd70082a7c27ce17
  Author: emre brookes <ehb54 at users.noreply.github.com>
  Date:   2026-03-10 (Tue, 10 Mar 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    M test/utils/test_us_time_state.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


  Commit: 45140eeddd64e45d6b5c87061f79c9aefc3ce25e
      https://github.com/ehb54/ultrascan3/commit/45140eeddd64e45d6b5c87061f79c9aefc3ce25e
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    M programs/us/revision.sh
    M scripts/build.ps1

  Log Message:
  -----------
  fix: windows CI vcpkg cache usage


  Commit: 1ec6ec52d283b6c710abe095ebcad82139a64ae3
      https://github.com/ehb54/ultrascan3/commit/1ec6ec52d283b6c710abe095ebcad82139a64ae3
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M CMakePresets.json
    M scripts/build.sh

  Log Message:
  -----------
  add: macos intel build


  Commit: 39ad33c5c781b0f007822456803df7d591795fe7
      https://github.com/ehb54/ultrascan3/commit/39ad33c5c781b0f007822456803df7d591795fe7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/build.ps1

  Log Message:
  -----------
  fix: vcpkg CI handling


  Commit: 7fad3a4dfaa187ad4eb94554cedbe3ec6cf56773
      https://github.com/ehb54/ultrascan3/commit/7fad3a4dfaa187ad4eb94554cedbe3ec6cf56773
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M programs/us_mpi_analysis/revision.sh

  Log Message:
  -----------
  fix: change revision to git_revision to be consistent with other programs


  Commit: b4417a6bfd0cfcc840668d21e88718e957734e47
      https://github.com/ehb54/ultrascan3/commit/b4417a6bfd0cfcc840668d21e88718e957734e47
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M test/utils/test_us_time_state.cpp
    M utils/libus_utils.pro
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: f0c8ede548bfb3a6f2380059dd1aacf09c6a7883
      https://github.com/ehb54/ultrascan3/commit/f0c8ede548bfb3a6f2380059dd1aacf09c6a7883
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/bootstrap-macos.sh

  Log Message:
  -----------
  fix: add missing dependencies


  Commit: 09eeb4bec49931c943f732f024f1166b882c3e3a
      https://github.com/ehb54/ultrascan3/commit/09eeb4bec49931c943f732f024f1166b882c3e3a
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    R README.linguist
    M etc/etc_belongs_list.txt
    R etc/us3-GMP-icon-128x128.ico
    M etc/us3-GMP-icon-128x128.png
    R etc/us3-GMP-icon-128x128.xpm
    R etc/us3-GMP-icon-32x32.ico
    R etc/us3-GMP-icon-32x32.png
    R etc/us3-GMP-icon-32x32.xpm
    R etc/us3-GMP-icon-48x48.ico
    R etc/us3-GMP-icon-48x48.png
    R etc/us3-GMP-icon-48x48.xpm
    M gui/libus_gui.pro
    M gui/us_convert_gui.cpp
    M gui/us_convert_gui.h
    M programs/us/us.pro
    R programs/us/us_de_DE.ts
    M programs/us_config/us_config.pro
    M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.h
    R propignore
    R proppng
    R proptext
    R qwtplot3d/lingua_de.ts
    M test/utils/test_us_crypto.cpp
    M test/utils/test_us_time_state.cpp
    M utils/libus_utils.pro
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h
    M utils/us_cfa_data.cpp
    M utils/us_crypto.cpp
    M utils/us_crypto.h
    M utils/us_time_state.cpp
    M utils/us_time_state.h
    M utils/us_xpn_data.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2


  Commit: 51ba58286eaaa41af877ff9330d19560633e1c16
      https://github.com/ehb54/ultrascan3/commit/51ba58286eaaa41af877ff9330d19560633e1c16
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/bootstrap-macos.sh

  Log Message:
  -----------
  fix: add missing dependencies


  Commit: 21a5f4a7ad52a67040b9426ed30a082038813498
      https://github.com/ehb54/ultrascan3/commit/21a5f4a7ad52a67040b9426ed30a082038813498
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: reduce linux disk space usage


  Commit: 12b7e30a17e5c86f8e9d4960f7e8da86d67b3b4f
      https://github.com/ehb54/ultrascan3/commit/12b7e30a17e5c86f8e9d4960f7e8da86d67b3b4f
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: removed vcpkg folder creation


  Commit: ece15a944fb55077213717e00f084056004367a7
      https://github.com/ehb54/ultrascan3/commit/ece15a944fb55077213717e00f084056004367a7
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-11 (Wed, 11 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinDeploy.cmake

  Log Message:
  -----------
  mod: change qt warnings an error to force build to stop


  Commit: 80474c759ff865d72c8c6043ba64d38bf98e1e15
      https://github.com/ehb54/ultrascan3/commit/80474c759ff865d72c8c6043ba64d38bf98e1e15
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: reduce to 2 cores for ubuntu


  Commit: e9f0952dea5d8bb82a866082b546997a3e457ec4
      https://github.com/ehb54/ultrascan3/commit/e9f0952dea5d8bb82a866082b546997a3e457ec4
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


  Commit: c4af75ba6a8e299d819034f87528f9d6997e469f
      https://github.com/ehb54/ultrascan3/commit/c4af75ba6a8e299d819034f87528f9d6997e469f
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 0f81d3f0d1fb567b1e570ed90147a17f49e57c1f
      https://github.com/ehb54/ultrascan3/commit/0f81d3f0d1fb567b1e570ed90147a17f49e57c1f
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    M admin/cmake/packaging/windows/WinDeploy.cmake
    R scripts/bootstrap-deps.sh
    A scripts/bootstrap-linux.sh
    M scripts/bootstrap-macos.sh
    M scripts/build.sh
    M utils/CMakeLists.txt
    M vcpkg.json

  Log Message:
  -----------
  mod: move checks to bootstrap


  Commit: 4ff50388194860753c3e8bc4d697e944ce0f1641
      https://github.com/ehb54/ultrascan3/commit/4ff50388194860753c3e8bc4d697e944ce0f1641
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M gui/us_extinction_gui.cpp
    M gui/us_extinction_gui.h
    M programs/us_legacy_converter/us_legacy_converter.cpp
    M programs/us_legacy_converter/us_legacy_converter.h
    M programs/us_query_rmsd/us_query_rmsd.cpp
    M programs/us_query_rmsd/us_query_rmsd.h
    M programs/us_ramp/us_ramp_gui.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2


  Commit: 82349a16124679984a45c562feb3f2583dbdb531
      https://github.com/ehb54/ultrascan3/commit/82349a16124679984a45c562feb3f2583dbdb531
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-13 (Fri, 13 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: add platform safe check


  Commit: 8a2d982f8e8906a85bfe363487622d59a1ff361e
      https://github.com/ehb54/ultrascan3/commit/8a2d982f8e8906a85bfe363487622d59a1ff361e
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 6d361b64fc8f314fe8399f028d2c79ef9d0e417b
      https://github.com/ehb54/ultrascan3/commit/6d361b64fc8f314fe8399f028d2c79ef9d0e417b
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M scripts/build.sh

  Log Message:
  -----------
  mod: clean after build set


  Commit: 5b81b9c41fc973670663047afba591d6edaa898c
      https://github.com/ehb54/ultrascan3/commit/5b81b9c41fc973670663047afba591d6edaa898c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinDeploy.cmake

  Log Message:
  -----------
  fix: packaging


  Commit: 10e620037c83dddc66d518ab28e33eb36c3e3c17
      https://github.com/ehb54/ultrascan3/commit/10e620037c83dddc66d518ab28e33eb36c3e3c17
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-14 (Sat, 14 Mar 2026)

  Changed paths:
    M gui/us_analyte_gui.cpp
    M gui/us_plot3d.cpp
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M utils/us_timer.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


  Commit: 3afad49842a3c53daabf741428b683cb8e86837c
      https://github.com/ehb54/ultrascan3/commit/3afad49842a3c53daabf741428b683cb8e86837c
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: afdf12344c5555d4130fa310bf352f2c27bbdadc
      https://github.com/ehb54/ultrascan3/commit/afdf12344c5555d4130fa310bf352f2c27bbdadc
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    A buildsys/vcpkg/overlay-ports/qttools.disable/devendor-litehtml.patch
    A buildsys/vcpkg/overlay-ports/qttools.disable/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools.disable/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qttools.disable/windeployqt.debug.bat
    R buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
    R buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
    R buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
    R buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat

  Log Message:
  -----------
  test remove qttools overlay


  Commit: 691c2112f822e5f82f6f153dbb8d568663367a2c
      https://github.com/ehb54/ultrascan3/commit/691c2112f822e5f82f6f153dbb8d568663367a2c
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-15 (Sun, 15 Mar 2026)

  Changed paths:
    M programs/us_config/us_admin.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2


  Commit: 5fbfc3b610b9edaa535c2cdde484daba5a1f6d23
      https://github.com/ehb54/ultrascan3/commit/5fbfc3b610b9edaa535c2cdde484daba5a1f6d23
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinDeploy.cmake
    A buildsys/vcpkg/overlay-ports/qt5-tools/fix-pkgconfig-qt5uiplugin-not-found.patch
    A buildsys/vcpkg/overlay-ports/qt5-tools/fix-spawnvp-argv.patch
    A buildsys/vcpkg/overlay-ports/qt5-tools/libclang.patch
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    M buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
    M scripts/bootstrap-windows.ps1
    M scripts/build.ps1

  Log Message:
  -----------
  fix: restore patch for qt5-tools


  Commit: ee9314b8a10555d579148933ce5fb59dc77f25a5
      https://github.com/ehb54/ultrascan3/commit/ee9314b8a10555d579148933ce5fb59dc77f25a5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/windows/WinDeploy.cmake
    M scripts/bootstrap-windows.ps1

  Log Message:
  -----------
  fix: nasm check and add supporting dlls to installation


  Commit: f9860bd8d1ac6f5c5c4a4b0dd90e3cb7f09bd131
      https://github.com/ehb54/ultrascan3/commit/f9860bd8d1ac6f5c5c4a4b0dd90e3cb7f09bd131
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-16 (Mon, 16 Mar 2026)

  Changed paths:
    M scripts/build.ps1
    M vcpkg.json

  Log Message:
  -----------
  mod: check path length is too long on qt 5


  Commit: 4365eb02a1c29a38a42fe848da39deab69e67715
      https://github.com/ehb54/ultrascan3/commit/4365eb02a1c29a38a42fe848da39deab69e67715
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    R buildsys/vcpkg/overlay-ports/qttools.disable/devendor-litehtml.patch
    R buildsys/vcpkg/overlay-ports/qttools.disable/portfile.cmake
    R buildsys/vcpkg/overlay-ports/qttools.disable/vcpkg.json
    R buildsys/vcpkg/overlay-ports/qttools.disable/windeployqt.debug.bat

  Log Message:
  -----------
  del: remove unused overlay


  Commit: efe1a2ba8b277a19ae50d1262c14239f9f9dac81
      https://github.com/ehb54/ultrascan3/commit/efe1a2ba8b277a19ae50d1262c14239f9f9dac81
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M scripts/bootstrap-linux.sh

  Log Message:
  -----------
  add: missing linux packages libsm-dev libice-dev


  Commit: 84f1faaa0819a233d3023bd3ae0d75d2ccaf6430
      https://github.com/ehb54/ultrascan3/commit/84f1faaa0819a233d3023bd3ae0d75d2ccaf6430
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    A buildsys/vcpkg/overlay-ports/mpg123/fix-arm64-no-fpu-neon64.patch
    A buildsys/vcpkg/overlay-ports/mpg123/have-fpu.diff
    A buildsys/vcpkg/overlay-ports/mpg123/pkgconfig.diff
    A buildsys/vcpkg/overlay-ports/mpg123/portfile.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/vcpkg.json

  Log Message:
  -----------
  add: port overlay for linux arm fix


  Commit: 501adedca88f7d331c3a70d62c04cc4992f86979
      https://github.com/ehb54/ultrascan3/commit/501adedca88f7d331c3a70d62c04cc4992f86979
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M admin/cmake/packaging/macos/MacDeploy.cmake
    M admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
    A admin/cmake/packaging/macos/StageAssistantDev.cmake
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
    A buildsys/vcpkg/overlay-ports/qttools/port.data.cmake
    A buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat
    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
    M programs/us/CMakeLists.txt
    M scripts/build.sh

  Log Message:
  -----------
  add: overlay port for qttools


  Commit: e1e93704ad79bf8d43c6c4eba74a4c90b1dc1fdf
      https://github.com/ehb54/ultrascan3/commit/e1e93704ad79bf8d43c6c4eba74a4c90b1dc1fdf
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-17 (Tue, 17 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: 81695e7ad3f97f7cd46fe42d8148a8911fc3fc43
      https://github.com/ehb54/ultrascan3/commit/81695e7ad3f97f7cd46fe42d8148a8911fc3fc43
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h

  Log Message:
  -----------
  Merge branch 'main' into 527-enhancement-sphinx-migration-2


  Commit: bed8960f5d491db022be512a82491fc248abcbf9
      https://github.com/ehb54/ultrascan3/commit/bed8960f5d491db022be512a82491fc248abcbf9
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M doc/manual/CMakeLists.txt
    M doc/manual/README.md
    M doc/manual/source/conf.py
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  mod: PR comments addressed


  Commit: 5205cb5542bd366b63909189ac9691c6473fc071
      https://github.com/ehb54/ultrascan3/commit/5205cb5542bd366b63909189ac9691c6473fc071
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M gui/us_plot.cpp
    M gui/us_plot.h
    M programs/us_analysis_profile/us_anapro_utils.cpp
    M programs/us_ddist_combine/us_ddist_combine.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M programs/us_experiment/us_exp_utils.cpp
    M programs/us_experiment/us_experiment_gui_optima.h
    M programs/us_experiment/us_proto_ranges.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_spectrum/us_spectrum.cpp
    M programs/us_spectrum/us_spectrum.h
    M test/utils/test_us_crypto.cpp
    M utils/us_crypto.cpp
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2


  Commit: 76e772666ba74f76a6d525444b9c0cd8f9d01e76
      https://github.com/ehb54/ultrascan3/commit/76e772666ba74f76a6d525444b9c0cd8f9d01e76
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-19 (Thu, 19 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M doc/manual/CMakeLists.txt

  Log Message:
  -----------
  fix: skip subdirectory doc/manual if hpc or documentation off


  Commit: 05b438d52cffda88429e278cae66fead57b193ec
      https://github.com/ehb54/ultrascan3/commit/05b438d52cffda88429e278cae66fead57b193ec
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M CMakePresets.json
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    R doc/manual/source/conf.py-orig.081225
    M gui/CMakeLists.txt
    M programs/us_helpdaemon/us_helpdaemon.cpp

  Log Message:
  -----------
  fix: Reformat CMakePresets.json to multi-line style; add US3_NO_DB=ON to all HPC
     presets; fix GLU elseif(UNIX) branch; drop dead Windows assistant path check.


  Commit: 21882cd1fd05a489de72b721e1e4bebaa8fb9ac5
      https://github.com/ehb54/ultrascan3/commit/21882cd1fd05a489de72b721e1e4bebaa8fb9ac5
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M doc/manual/CMakeLists.txt
    M programs/us/CMakeLists.txt

  Log Message:
  -----------
  fix: pr comments


  Commit: 39a94736afc6e6b1450549833138c494fc1ff36b
      https://github.com/ehb54/ultrascan3/commit/39a94736afc6e6b1450549833138c494fc1ff36b
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M doc/manual/Makefile

  Log Message:
  -----------
  fix: make all moved to top


  Commit: 55ad77b5ea4726efff74c2e3da2b763af7b12070
      https://github.com/ehb54/ultrascan3/commit/55ad77b5ea4726efff74c2e3da2b763af7b12070
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-20 (Fri, 20 Mar 2026)

  Changed paths:
    M CMakeLists.txt
    M CMakePresets.json
    M doc/manual/CMakeLists.txt

  Log Message:
  -----------
  fix: presets


  Commit: 8aeda75b69a9c2d9df2af035ea7265bb93bdacef
      https://github.com/ehb54/ultrascan3/commit/8aeda75b69a9c2d9df2af035ea7265bb93bdacef
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-21 (Sat, 21 Mar 2026)

  Changed paths:
    A admin/cmake/README.md
    A admin/cmake/packaging/README.md
    A pkg/macos/README.md

  Log Message:
  -----------
  mod: readmes


  Commit: 81c3a3a5d2a743645b19098027b58ecdc429d634
      https://github.com/ehb54/ultrascan3/commit/81c3a3a5d2a743645b19098027b58ecdc429d634
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-03-22 (Sun, 22 Mar 2026)

  Changed paths:
    R doc/manual/source/2dsa/2dsa_adv.rst
    R doc/manual/source/2dsa/2dsa_analys.rst
    R doc/manual/source/2dsa/2dsa_main.rst
    R doc/manual/source/2dsa/index.rst
    R doc/manual/source/3d_plot.rst
    R doc/manual/source/analyte/analyte_edit.rst
    R doc/manual/source/analyte/analyte_new.rst
    R doc/manual/source/analyte/analyte_select.rst
    R doc/manual/source/analyte/analyte_settings.rst
    R doc/manual/source/analyte/index.rst
    R doc/manual/source/associations.rst
    R doc/manual/source/astfem_sim.rst
    R doc/manual/source/beckman_openauc.rst
    R doc/manual/source/buffer/buffer_edit.rst
    R doc/manual/source/buffer/buffer_new.rst
    R doc/manual/source/buffer/buffer_select.rst
    R doc/manual/source/buffer/buffer_settings.rst
    R doc/manual/source/buffer/index.rst
    R doc/manual/source/buoyancy_editor.rst
    R doc/manual/source/colorgradient.rst
    R doc/manual/source/combine_models.rst
    R doc/manual/source/common_dialogs.rst
    R doc/manual/source/components.rst
    R doc/manual/source/config.rst
    R doc/manual/source/convert.rst
    R doc/manual/source/ddist_combine.rst
    R doc/manual/source/dens_match.rst
    R doc/manual/source/dmga_init.rst
    R doc/manual/source/dmga_init_constr.rst
    R doc/manual/source/experiment/cells.rst
    R doc/manual/source/experiment/general.rst
    R doc/manual/source/experiment/import.rst
    R doc/manual/source/experiment/index.rst
    R doc/manual/source/experiment/liveupdate.rst
    R doc/manual/source/experiment/optics.rst
    R doc/manual/source/experiment/range.rst
    R doc/manual/source/experiment/rotor.rst
    R doc/manual/source/experiment/solutions.rst
    R doc/manual/source/experiment/speeds.rst
    R doc/manual/source/experiment/submit.rst
    R doc/manual/source/export_legacy.rst
    R doc/manual/source/fe_match/fe_match_adv.rst
    R doc/manual/source/fe_match/fe_match_main.rst
    R doc/manual/source/fe_match/fe_match_simulate.rst
    R doc/manual/source/fe_match/index.rst
    R doc/manual/source/fit_meniscus.rst
    R doc/manual/source/ga_initialize.rst
    R doc/manual/source/gmp/gmp.rst
    R doc/manual/source/gmp/gmp_audit_trail.rst
    R doc/manual/source/gmp/gmp_automation.rst
    R doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst
    R doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst
    R doc/manual/source/gmp/gmp_data_acquisition/index.rst
    R doc/manual/source/gmp/gmp_protocol_development.rst
    R doc/manual/source/gmp/gmp_report_generator.rst
    R doc/manual/source/gmp/gmp_signature.rst
    R doc/manual/source/gmp/index.rst
    R doc/manual/source/grid_editor.rst
    R doc/manual/source/idist_combine.rst
    R doc/manual/source/images/2dsa_3dplot.png
    R doc/manual/source/images/2dsa_advan.png
    R doc/manual/source/images/2dsa_analvv.png
    R doc/manual/source/images/2dsa_analys.png
    R doc/manual/source/images/2dsa_main-c.png
    R doc/manual/source/images/2dsa_main-o.png
    R doc/manual/source/images/2dsa_resplot.png
    R doc/manual/source/images/D20W_bar.png
    R doc/manual/source/images/MW-bar.png
    R doc/manual/source/images/RINplot.png
    R doc/manual/source/images/TINplot.png
    R doc/manual/source/images/UltraScan-logo.png
    R doc/manual/source/images/add_RIN-TIN.png
    R doc/manual/source/images/add_RIN.png
    R doc/manual/source/images/add_TIN.png
    R doc/manual/source/images/advanced_config.png
    R doc/manual/source/images/analyte_details.png
    R doc/manual/source/images/analyte_edit.png
    R doc/manual/source/images/analyte_edit_spec.png
    R doc/manual/source/images/analyte_new_sequence.png
    R doc/manual/source/images/analyte_newc.png
    R doc/manual/source/images/analyte_newd.png
    R doc/manual/source/images/analyte_newp.png
    R doc/manual/source/images/analyte_selectc.png
    R doc/manual/source/images/analyte_selectd.png
    R doc/manual/source/images/analyte_selectp.png
    R doc/manual/source/images/analyte_sequence.png
    R doc/manual/source/images/analyte_settings.png
    R doc/manual/source/images/analyte_spec-gui.png
    R doc/manual/source/images/analyte_specmenu.png
    R doc/manual/source/images/analyte_spectrum.png
    R doc/manual/source/images/analytes.png
    R doc/manual/source/images/associations.png
    R doc/manual/source/images/astfem_sim.png
    R doc/manual/source/images/bad_grid.png
    R doc/manual/source/images/beck_convert-2.png
    R doc/manual/source/images/beck_converter.png
    R doc/manual/source/images/bitmap.png
    R doc/manual/source/images/buffer_edit.png
    R doc/manual/source/images/buffer_edit_setting.png
    R doc/manual/source/images/buffer_edit_spectrum.png
    R doc/manual/source/images/buffer_info.png
    R doc/manual/source/images/buffer_manage_spectrum.png
    R doc/manual/source/images/buffer_new.png
    R doc/manual/source/images/buffer_new_spectrum.png
    R doc/manual/source/images/buffer_select.png
    R doc/manual/source/images/buffer_settings.png
    R doc/manual/source/images/buffer_spectrum.png
    R doc/manual/source/images/cfa_view-loadauc.png
    R doc/manual/source/images/cfa_view-loadraw.png
    R doc/manual/source/images/cfa_view-main.png
    R doc/manual/source/images/cfa_view-statsauc.png
    R doc/manual/source/images/cfa_view-statsraw.png
    R doc/manual/source/images/color-1.png
    R doc/manual/source/images/color-2.png
    R doc/manual/source/images/color-a.png
    R doc/manual/source/images/color-b.png
    R doc/manual/source/images/colorgrad1.png
    R doc/manual/source/images/colorgradient/col1_colgen.png
    R doc/manual/source/images/colorgradient/col1_colgen_Fe_match.png
    R doc/manual/source/images/colorgradient/col1_colgen_GA.png
    R doc/manual/source/images/colorgradient/col2_colgen.png
    R doc/manual/source/images/colorgradient/colorgrad.png
    R doc/manual/source/images/colorgradient/colorgradient_main.png
    R doc/manual/source/images/colorgradient/components.png
    R doc/manual/source/images/colorgradient/model_editor.png
    R doc/manual/source/images/combine_models-idedit.png
    R doc/manual/source/images/combine_models-save.png
    R doc/manual/source/images/combine_models.png
    R doc/manual/source/images/components.png
    R doc/manual/source/images/config.png
    R doc/manual/source/images/config1.png
    R doc/manual/source/images/config2.png
    R doc/manual/source/images/config_plot.png
    R doc/manual/source/images/convert-RIdata.png
    R doc/manual/source/images/convert-exclude.png
    R doc/manual/source/images/convert-experiment.png
    R doc/manual/source/images/convert-mwl.png
    R doc/manual/source/images/convert-seltrip.png
    R doc/manual/source/images/convert-subset.png
    R doc/manual/source/images/convert-tolerance.png
    R doc/manual/source/images/convert.png
    R doc/manual/source/images/custom_grid-1.png
    R doc/manual/source/images/custom_grid.png
    R doc/manual/source/images/data_converter.png
    R doc/manual/source/images/data_loader-edits.png
    R doc/manual/source/images/data_loader-trips.png
    R doc/manual/source/images/data_loader.png
    R doc/manual/source/images/database.png
    R doc/manual/source/images/ddist_combine-selrun.png
    R doc/manual/source/images/ddist_combine.png
    R doc/manual/source/images/densmatch_main.png
    R doc/manual/source/images/densmatch_mpars_completed.png
    R doc/manual/source/images/densmatch_mpars_empty.png
    R doc/manual/source/images/densmatch_rmvmodels.png
    R doc/manual/source/images/edit_buffer_spec_menu.png
    R doc/manual/source/images/eq1-mean.png
    R doc/manual/source/images/eq2-skew.png
    R doc/manual/source/images/eq3-kurtosis.png
    R doc/manual/source/images/eq4-moments.png
    R doc/manual/source/images/eq5-variance.png
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  Log Message:
  -----------
  mod: removed documentation.


  Commit: f448548065ff12b1c240270de9d4827cf5f51a79
      https://github.com/ehb54/ultrascan3/commit/f448548065ff12b1c240270de9d4827cf5f51a79
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-24 (Tue, 24 Mar 2026)

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    R doc/manual/index.body
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    R doc/manual/mainstyle.css
    R doc/manual/make-docs.sh
    R doc/manual/make-html.sh
    R doc/manual/make-qdocs.sh
    R doc/manual/make-wraps.sh
    R doc/manual/manage_data.body
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    R doc/manual/select_edits.body
    R doc/manual/select_runs.body
    R doc/manual/simparams.body
    R doc/manual/somo.body
    A doc/manual/source/_static/css/custom.css
    A doc/manual/source/_static/js/language_data.js
    A doc/manual/source/_static/js/sphinx_highlight.js
    A doc/manual/source/conf.py
    A doc/manual/source/index.rst
    A doc/manual/source/requirements.txt
    R doc/manual/template.img.body
    R doc/manual/tidy.conf
    R doc/manual/time_derivative.body
    R doc/manual/ultrascan3.txt
    R doc/manual/us_buffer.body
    R doc/manual/us_edit.body
    R doc/manual/us_edit_mwl.body
    R doc/manual/us_equiltime.body
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    R doc/manual/vhw_combine.body
    R doc/manual/vhw_distrib_plot.body
    R doc/manual/vhw_enhanced.body
    R doc/manual/wrapped-images.lst
    M gui/CMakeLists.txt
    M gui/us_help.cpp
    M makeall.sh
    A pkg/macos/README.md
    A pkg/macos/component.plist
    A pkg/macos/distribution.xml.in
    A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist
    A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3
    A pkg/macos/postinstall
    A pkg/macos/preinstall
    A pkg/macos/resources/Welcome.txt.in
    A pkg/macos/resources/background.png
    A pkg/macos/ultrascan_sysctl.plist
    A pkg/macos/uninstall.sh
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us/revision.sh
    M programs/us/us.cpp
    M programs/us_helpdaemon/us_helpdaemon.cpp
    M programs/us_mpi_analysis/2dsa_worker.cpp
    M programs/us_mpi_analysis/CMakeLists.txt
    M programs/us_mpi_analysis/pcsa_worker.cpp
    M programs/us_mpi_analysis/revision.sh
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M qwtplot3d/CMakeLists.txt
    A scripts/bootstrap-linux.sh
    A scripts/bootstrap-macos.sh
    A scripts/bootstrap-windows.ps1
    A scripts/bootstrap.bat
    M scripts/build.bat
    M scripts/build.ps1
    M scripts/build.sh
    A us-build
    M utils/CMakeLists.txt
    M utils/us_memory.cpp
    M vcpkg.json

  Log Message:
  -----------
  Merge pull request #374 from ehb54/527-enhancement-sphinx-migration-2

Integrate Sphinx Document Generation


  Commit: 0a9196aea05b0dc1c6f984302c09ffefa32db302
      https://github.com/ehb54/ultrascan3/commit/0a9196aea05b0dc1c6f984302c09ffefa32db302
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-03-24 (Tue, 24 Mar 2026)

  Changed paths:
    M .github/workflows/bump-version.yml
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    M LICENSE.txt
    M README.manual
    M admin/cmake/GenerateVersion.cmake
    A admin/cmake/README.md
    A admin/cmake/packaging/README.md
    A admin/cmake/packaging/linux/LinuxDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcPkg.cmake
    A admin/cmake/packaging/linux/LinuxPkg.cmake
    A admin/cmake/packaging/macos/MacDeploy.cmake
    A admin/cmake/packaging/macos/MacHpcDeploy.cmake
    A admin/cmake/packaging/macos/MacHpcPkg.cmake
    A admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
    A admin/cmake/packaging/macos/MacOsPkg.cmake
    A admin/cmake/packaging/macos/StageAssistantDev.cmake
    A admin/cmake/packaging/windows/WinDeploy.cmake
    A admin/cmake/packaging/windows/WinPkg.cmake
    A admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
    M admin/cmake/toolchain.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/fix-arm64-no-fpu-neon64.patch
    A buildsys/vcpkg/overlay-ports/mpg123/have-fpu.diff
    A buildsys/vcpkg/overlay-ports/mpg123/pkgconfig.diff
    A buildsys/vcpkg/overlay-ports/mpg123/portfile.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/vcpkg.json
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
    A buildsys/vcpkg/overlay-ports/qttools/port.data.cmake
    A buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
    A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
    A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat
    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
    R doc/manual/2dsa/2dsa.body
    R doc/manual/2dsa/2dsa_advan.body
    R doc/manual/2dsa/2dsa_analvv.body
    R doc/manual/2dsa/2dsa_analys.body
    M doc/manual/CMakeLists.txt
    M doc/manual/Makefile
    M doc/manual/README.md
    R doc/manual/advanced_config.body
    R doc/manual/analytes.body
    R doc/manual/associations.body
    R doc/manual/astfem_sim.body
    R doc/manual/buffer_edit.body
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    R doc/manual/buffer_select.body
    R doc/manual/buffer_settings.body
    R doc/manual/cfa_viewer.body
    R doc/manual/colorgradient.body
    R doc/manual/combine_models.body
    R doc/manual/components.body
    R doc/manual/config.body
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    R doc/manual/database_config.body
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    R doc/manual/dens_match.body
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    R doc/manual/experiment/experiment_cells.body
    R doc/manual/experiment/experiment_general.body
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    R doc/manual/experiment/experiment_rotor.body
    R doc/manual/experiment/experiment_solutions.body
    R doc/manual/experiment/experiment_speeds.body
    R doc/manual/experiment/experiment_upload.body
    R doc/manual/export_legacy.body
    R doc/manual/fe_match/fe_match.body
    R doc/manual/fe_match/fe_match_adv.body
    R doc/manual/fe_match/fe_match_controls.body
    R doc/manual/fe_match/fe_match_lddat.body
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    R doc/manual/fit_meniscus.body
    R doc/manual/footer.us3
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    R doc/manual/gmp/gmp.body
    R doc/manual/gmp/gmp_audit_trail.body
    R doc/manual/gmp/gmp_data_acquisition.body
    R doc/manual/gmp/gmp_data_acquisition_experiment.body
    R doc/manual/gmp/gmp_data_acquisition_gmp.body
    R doc/manual/gmp/gmp_protocol_development.body
    R doc/manual/gmp/gmp_report_generator.body
    R doc/manual/gmp/gmp_signature.body
    R doc/manual/grid_editor.body
    R doc/manual/header.us3
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    R doc/manual/images/2dsa_analys.png
    R doc/manual/images/2dsa_main-c.png
    R doc/manual/images/2dsa_main-o.png
    R doc/manual/images/2dsa_resplot.png
    R doc/manual/images/advanced_config.png
    R doc/manual/images/analyte_details.png
    R doc/manual/images/analytes.png
    R doc/manual/images/associations.png
    R doc/manual/images/astfem_sim.png
    R doc/manual/images/buffer_edit.png
    R doc/manual/images/buffer_info.png
    R doc/manual/images/buffer_new.png
    R doc/manual/images/buffer_select.png
    R doc/manual/images/buffer_settings.png
    R doc/manual/images/cfa_view-loadauc.png
    R doc/manual/images/cfa_view-loadraw.png
    R doc/manual/images/cfa_view-main.png
    R doc/manual/images/cfa_view-statsauc.png
    R doc/manual/images/cfa_view-statsraw.png
    R doc/manual/images/color-1.png
    R doc/manual/images/color-2.png
    R doc/manual/images/color-a.png
    R doc/manual/images/color-b.png
    R doc/manual/images/colorgrad.png
    R doc/manual/images/colorgrad1.png
    R doc/manual/images/combine_models-idedit.png
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    R doc/manual/images/components.png
    R doc/manual/images/config.png
    R doc/manual/images/config1.png
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    R doc/manual/images/convert-RIdata.png
    R doc/manual/images/convert-exclude.png
    R doc/manual/images/convert-experiment.png
    R doc/manual/images/convert-mwl.png
    R doc/manual/images/convert-seltrip.png
    R doc/manual/images/convert-subset.png
    R doc/manual/images/convert-tolerance.png
    R doc/manual/images/convert.png
    R doc/manual/images/data_loader-edits.png
    R doc/manual/images/data_loader-trips.png
    R doc/manual/images/data_loader.png
    R doc/manual/images/database.png
    R doc/manual/images/ddist_combine-selrun.png
    R doc/manual/images/ddist_combine.png
    R doc/manual/images/densmatch_main.png
    R doc/manual/images/densmatch_mpars_completed.png
    R doc/manual/images/densmatch_mpars_empty.png
    R doc/manual/images/densmatch_rmvmodels.png
    R doc/manual/images/eq1-mean.png
    R doc/manual/images/eq2-skew.png
    R doc/manual/images/eq3-kurtosis.png
    R doc/manual/images/eq4-moments.png
    R doc/manual/images/eq5-variance.png
    R doc/manual/images/eq6-stddev.png
    R doc/manual/images/eq7-probsigma.png
    R doc/manual/images/eq8-confidence.png
    R doc/manual/images/experiment_cells.png
    R doc/manual/images/experiment_general.png
    R doc/manual/images/experiment_photomult.png
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    M programs/us_mpi_analysis/2dsa_worker.cpp
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    M programs/us_reporter_gmp/us_reporter_gmp.cpp
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    M test/utils/test_us_crypto.cpp
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    M utils/us_crypto.cpp
    M utils/us_memory.cpp
    M utils/us_run_protocol.cpp
    M utils/us_run_protocol.h
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into ehb54-issue-670


  Commit: a3d889c69f7012ff5840a86814780d3490d5ea2a
      https://github.com/ehb54/ultrascan3/commit/a3d889c69f7012ff5840a86814780d3490d5ea2a
  Author: emre brookes <ehb54 at users.noreply.github.com>
  Date:   2026-03-24 (Tue, 24 Mar 2026)

  Changed paths:
    M programs/us/revision.sh

  Log Message:
  -----------
  Merge pull request #377 from ehb54/ehb54-issue-670

fix revision.sh checks osx/linux compat.


  Commit: aece3e3e7171e4b42fde89c87820aa518fb4315c
      https://github.com/ehb54/ultrascan3/commit/aece3e3e7171e4b42fde89c87820aa518fb4315c
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-03-24 (Tue, 24 Mar 2026)

  Changed paths:
    M .github/workflows/bump-version.yml
    M .gitignore
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    M CMakePresets.json
    M LICENSE.txt
    M README.manual
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    A admin/cmake/README.md
    A admin/cmake/packaging/README.md
    A admin/cmake/packaging/linux/LinuxDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
    A admin/cmake/packaging/linux/LinuxHpcPkg.cmake
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    A admin/cmake/packaging/macos/MacDeploy.cmake
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    A admin/cmake/packaging/macos/MacHpcPkg.cmake
    A admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
    A admin/cmake/packaging/macos/MacOsPkg.cmake
    A admin/cmake/packaging/macos/StageAssistantDev.cmake
    A admin/cmake/packaging/windows/WinDeploy.cmake
    A admin/cmake/packaging/windows/WinPkg.cmake
    A admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
    M admin/cmake/toolchain.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/fix-arm64-no-fpu-neon64.patch
    A buildsys/vcpkg/overlay-ports/mpg123/have-fpu.diff
    A buildsys/vcpkg/overlay-ports/mpg123/pkgconfig.diff
    A buildsys/vcpkg/overlay-ports/mpg123/portfile.cmake
    A buildsys/vcpkg/overlay-ports/mpg123/vcpkg.json
    M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
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    A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
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    M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
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    A doc/manual/source/_static/css/custom.css
    A doc/manual/source/_static/js/language_data.js
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    A doc/manual/source/conf.py
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    M gui/CMakeLists.txt
    M gui/us_help.cpp
    M makeall.sh
    A pkg/macos/README.md
    A pkg/macos/component.plist
    A pkg/macos/distribution.xml.in
    A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist
    A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3
    A pkg/macos/postinstall
    A pkg/macos/preinstall
    A pkg/macos/resources/Welcome.txt.in
    A pkg/macos/resources/background.png
    A pkg/macos/ultrascan_sysctl.plist
    A pkg/macos/uninstall.sh
    M programs/CMakeLists.txt
    M programs/us/CMakeLists.txt
    M programs/us/revision.sh
    M programs/us/us.cpp
    M programs/us_helpdaemon/us_helpdaemon.cpp
    M programs/us_mpi_analysis/2dsa_worker.cpp
    M programs/us_mpi_analysis/CMakeLists.txt
    M programs/us_mpi_analysis/pcsa_worker.cpp
    M programs/us_mpi_analysis/revision.sh
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M qwtplot3d/CMakeLists.txt
    A scripts/bootstrap-linux.sh
    A scripts/bootstrap-macos.sh
    A scripts/bootstrap-windows.ps1
    A scripts/bootstrap.bat
    M scripts/build.bat
    M scripts/build.ps1
    M scripts/build.sh
    A us-build
    M utils/CMakeLists.txt
    M utils/us_memory.cpp
    M vcpkg.json

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_astfem_sim_bfe_fix


Compare: https://github.com/ehb54/ultrascan3/compare/fb3b2bbbe972...aece3e3e7171

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From noreply at github.com  Wed Mar 25 10:05:43 2026
From: noreply at github.com (alexsav815)
Date: Wed, 25 Mar 2026 09:05:43 -0700
Subject: [us-commits] [ehb54/us3_sql] b3637d: Update timestamp2UTC function
 to take care of time...
Message-ID: <ehb54/us3_sql/push/refs/heads/main/5aa1df-9bd2fd@github.com>

  Branch: refs/heads/main
  Home:   https://github.com/ehb54/us3_sql
  Commit: b3637dd10d6aaad0fdc66c67da4f2e9425823173
      https://github.com/ehb54/us3_sql/commit/b3637dd10d6aaad0fdc66c67da4f2e9425823173
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-12 (Thu, 12 Mar 2026)

  Changed paths:
    M us3_procedures.sql

  Log Message:
  -----------
  Update timestamp2UTC function to take care of time gaps due to time change - prevented multiple store procedures executions resulting in GMP & stand-alone programs crash/problems...


  Commit: 9bd2fd6ce0a0c1262e091a84adffdae3191d4e1a
      https://github.com/ehb54/us3_sql/commit/9bd2fd6ce0a0c1262e091a84adffdae3191d4e1a
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2026-03-25 (Wed, 25 Mar 2026)

  Changed paths:
    M us3_procedures.sql

  Log Message:
  -----------
  Merge pull request #29 from ehb54/alexey-dev-for-issue784

Update timestamp2UTC function to take care of time gaps due to time change


Compare: https://github.com/ehb54/us3_sql/compare/5aa1df282217...9bd2fd6ce0a0

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