[us-commits] [ehb54/ultrascan3] 254289: ACAB doubled
Lukas Dobler
noreply at github.com
Tue Mar 24 15:49:15 MDT 2026
Branch: refs/heads/lukas/us_solution_analyte
Home: https://github.com/ehb54/ultrascan3
Commit: 2542899201e17dd085de687f6fdfe671fa123bdb
https://github.com/ehb54/ultrascan3/commit/2542899201e17dd085de687f6fdfe671fa123bdb
Author: Haben Gabir <haben.gabir at uleth.ca>
Date: 2026-01-22 (Thu, 22 Jan 2026)
Changed paths:
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A doc/manual/source/experiment/cells.rst
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A doc/manual/source/gmp/gmp.rst
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A doc/manual/source/gmp/gmp_automation.rst
A doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst
A doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst
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A doc/manual/source/model_editor.rst
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A doc/manual/source/mwlr_viewer.rst
A doc/manual/source/pcsa/index.rst
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A doc/manual/source/pcsa/pcsa_adv.rst
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A doc/manual/source/predict1.rst
A doc/manual/source/predict2.rst
A doc/manual/source/pseudo3d.rst
A doc/manual/source/ramp_data.rst
A doc/manual/source/register.rst
A doc/manual/source/reporter.rst
A doc/manual/source/requirements.txt
A doc/manual/source/rmsd_query.rst
A doc/manual/source/rotor.rst
A doc/manual/source/rotor_calibration.rst
A doc/manual/source/run_details.rst
A doc/manual/source/sassoc.rst
A doc/manual/source/second_moment.rst
A doc/manual/source/simparams.rst
A doc/manual/source/solutions/index.rst
A doc/manual/source/solutions/solution_edit.rst
A doc/manual/source/solutions/solution_new.rst
A doc/manual/source/solutions/solution_select.rst
A doc/manual/source/solutions/solution_settings.rst
A doc/manual/source/start_page.rst
A doc/manual/source/temp.txt
A doc/manual/source/time_derivative.rst
A doc/manual/source/tmp.rst
A doc/manual/source/tmst_viewer.rst
A doc/manual/source/us_buoyancy.rst
A doc/manual/source/us_edit.rst
A doc/manual/source/us_equiltime.rst
A doc/manual/source/us_extinction.rst
A doc/manual/source/us_fds_filemanager.rst
A doc/manual/source/us_investigator.rst
A doc/manual/source/us_modelmetrics.rst
A doc/manual/source/us_project.rst
A doc/manual/source/us_spectrum.rst
A doc/manual/source/vhw_combine.rst
A doc/manual/source/vhw_distrib_plot.rst
A doc/manual/source/vhw_enhanced.rst
A doc/manual/source/xpn_viewer.rst
Log Message:
-----------
ACAB doubled
Commit: 8617cadc6147eda447864b6626622e9bffa4128e
https://github.com/ehb54/ultrascan3/commit/8617cadc6147eda447864b6626622e9bffa4128e
Author: Haben Gabir <haben.gabir at uleth.ca>
Date: 2026-02-20 (Fri, 20 Feb 2026)
Changed paths:
A doc/manual/source/_static/images/bad_grid.png
A doc/manual/source/_static/images/beck_convert-2.png
A doc/manual/source/_static/images/beck_converter.png
A doc/manual/source/_static/images/good_grid.png
A doc/manual/source/_static/images/grid-setup.png
A doc/manual/source/_static/images/mwlr_spectra_3d.png
A doc/manual/source/_static/images/mwlr_spectra_cont.png
A doc/manual/source/_static/images/mwlr_spectra_f.png
A doc/manual/source/_static/images/mwlr_spectra_o.png
A doc/manual/source/_static/images/mwlr_spectra_save.png
A doc/manual/source/_static/images/set-zvalue.png
A doc/manual/source/_static/images/xpn_viewer-loaded.png
A doc/manual/source/_static/images/xpn_viewer-saved.png
A doc/manual/source/_static/images/xpn_viewer.png
A doc/manual/source/_static/images/zvalue_eq.png
M doc/manual/source/beckman_openauc.rst
M doc/manual/source/buoyancy_editor.rst
M doc/manual/source/dmga_init.rst
M doc/manual/source/dmga_init_constr.rst
M doc/manual/source/experiment/import.rst
M doc/manual/source/experiment/index.rst
M doc/manual/source/experiment/liveupdate.rst
M doc/manual/source/gmp/gmp_automation.rst
M doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst
M doc/manual/source/gmp/gmp_protocol_development.rst
M doc/manual/source/grid_editor.rst
M doc/manual/source/mwl_species_fit.rst
M doc/manual/source/mwl_species_sim.rst
M doc/manual/source/mwl_spectra.rst
M doc/manual/source/predict1.rst
M doc/manual/source/ramp_data.rst
M doc/manual/source/tmp.rst
M doc/manual/source/us_buoyancy.rst
M doc/manual/source/xpn_viewer.rst
Log Message:
-----------
WALICAFB
Commit: 779bf5e32b16d7eddc415ecc2fe90709ac0026b9
https://github.com/ehb54/ultrascan3/commit/779bf5e32b16d7eddc415ecc2fe90709ac0026b9
Author: Haben Gabir <haben.gabir at uleth.ca>
Date: 2026-02-20 (Fri, 20 Feb 2026)
Changed paths:
A .github/workflows/bump-version.yml
M CMakeLists.txt
M CMakePresets.json
A admin/cmake/toolchain-macos.cmake
A admin/cmake/triplets/arm64-osx-dynamic.cmake
M admin/cmake/triplets/x64-osx-dynamic.cmake
R alpha/srcdevel
R alpha/us.cpp
M gui/us_analysis_base2.cpp
M gui/us_analysis_base2.h
M gui/us_csv_loader.cpp
M gui/us_model_loader.cpp
M gui/us_plot.cpp
M gui/us_report_gui.cpp
M gui/us_report_gui.h
M programs/CMakeLists.txt
M programs/us/CMakeLists.txt
M programs/us_2dsa/us_2dsa.cpp
M programs/us_2dsa/us_2dsa.h
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_dcdt/us_dcdt.cpp
M programs/us_dcdt/us_dcdt.h
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_experiment/us_proto_ranges.cpp
M programs/us_fit_meniscus/CMakeLists.txt
M programs/us_fit_meniscus/us_fit_meniscus.cpp
M programs/us_fit_meniscus/us_fit_meniscus.h
M programs/us_integral/us_integral.cpp
M programs/us_integral/us_integral.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.h
M programs/us_pcsa/us_pcsa.cpp
M programs/us_pcsa/us_pcsa.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_second_moment/us_second_moment.cpp
M programs/us_second_moment/us_second_moment.h
M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
M programs/us_vhw_enhanced/us_vhw_enhanced.h
M scripts/build.sh
A test/utils/test_us_regex.cpp
M utils/CMakeLists.txt
M utils/us_csv_data.cpp
Log Message:
-----------
Merge remote-tracking branch 'origin/main' into haben-Dev
Commit: 7bf106993a8f72d94033f56ec908772b1087c0ef
https://github.com/ehb54/ultrascan3/commit/7bf106993a8f72d94033f56ec908772b1087c0ef
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-02-21 (Sat, 21 Feb 2026)
Changed paths:
M .github/workflows/bump-version.yml
M README.manual
A buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
A buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat
M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
R doc/manual/2dsa/2dsa.body
R doc/manual/2dsa/2dsa_advan.body
R doc/manual/2dsa/2dsa_analvv.body
R doc/manual/2dsa/2dsa_analys.body
M doc/manual/CMakeLists.txt
M doc/manual/Makefile
M doc/manual/README.md
R doc/manual/advanced_config.body
R doc/manual/analytes.body
R doc/manual/associations.body
R doc/manual/astfem_sim.body
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R doc/manual/combine_models.body
R doc/manual/components.body
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R doc/manual/data_loader.body
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R doc/manual/fe_match/fe_match.body
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R doc/manual/fe_match/fe_match_lddat.body
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R doc/manual/manage_data_thelp.body
R doc/manual/manual.qhcp
R doc/manual/manual.qhp
R doc/manual/master_pw.body
R doc/manual/model_editor.body
R doc/manual/mwlr_view_load.body
R doc/manual/mwlr_view_pltctrl.body
R doc/manual/mwlr_viewer.body
R doc/manual/optima_host_config.body
R doc/manual/pcsa.body
R doc/manual/pcsa_analys.body
R doc/manual/pcsa_mlines.body
R doc/manual/pcsa_rpscan.body
R doc/manual/predict1.body
R doc/manual/predict2.body
R doc/manual/pseudo3d_comb_rmv.body
R doc/manual/pseudo3d_combine.body
R doc/manual/register.body
R doc/manual/reporter.body
R doc/manual/rotor.body
R doc/manual/rotorstretch.body
R doc/manual/sassoc.body
R doc/manual/save_colormap.body
R doc/manual/second_moment.body
R doc/manual/select_edits.body
R doc/manual/select_runs.body
R doc/manual/simparams.body
R doc/manual/somo.body
R doc/manual/source/#Makefile#
M doc/manual/source/conf.py
R doc/manual/source/make.bat
M doc/manual/source/requirements.txt
R doc/manual/template.img.body
R doc/manual/tidy.conf
R doc/manual/time_derivative.body
R doc/manual/ultrascan3.txt
R doc/manual/us_buffer.body
R doc/manual/us_edit.body
R doc/manual/us_edit_mwl.body
R doc/manual/us_equiltime.body
R doc/manual/us_fds_filemanager.body
R doc/manual/us_investigator.body
R doc/manual/us_modelmetrics.body
R doc/manual/us_project.body
R doc/manual/us_solution.body
R doc/manual/uscol.body
R doc/manual/uscolor2.body
R doc/manual/usfont.body
R doc/manual/usfont2.body
R doc/manual/vhw_combine.body
R doc/manual/vhw_distrib_plot.body
R doc/manual/vhw_enhanced.body
R doc/manual/wrapped-images.lst
M gui/us_help.cpp
M makeall.sh
M scripts/build.sh
R vcpkg
M vcpkg.json
Log Message:
-----------
mod: delete legacy help, integrate sphinx help
Commit: 3d08b0b47f4e2317e53a69e11dc522f164182ec7
https://github.com/ehb54/ultrascan3/commit/3d08b0b47f4e2317e53a69e11dc522f164182ec7
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-02-21 (Sat, 21 Feb 2026)
Changed paths:
M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
Log Message:
-----------
mod: release only build for macos
Commit: 7d351ae823d28a24be8d1406165cb8c4887fb1e7
https://github.com/ehb54/ultrascan3/commit/7d351ae823d28a24be8d1406165cb8c4887fb1e7
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-02-21 (Sat, 21 Feb 2026)
Changed paths:
M gui/us_report_gui.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_proto_ranges.cpp
Log Message:
-----------
Merge branch 'main' into 527-enhancement-sphinx-migration-2
Commit: 534da76a2eb5090416dc3e2fa4416db272ac9b91
https://github.com/ehb54/ultrascan3/commit/534da76a2eb5090416dc3e2fa4416db272ac9b91
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-02-24 (Tue, 24 Feb 2026)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
Merge branch 'main' into 527-enhancement-sphinx-migration-2
Commit: d28e726d4e40aae7be0f55ed03c1e7fe45e36d00
https://github.com/ehb54/ultrascan3/commit/d28e726d4e40aae7be0f55ed03c1e7fe45e36d00
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-02-24 (Tue, 24 Feb 2026)
Changed paths:
M doc/manual/source/colorgradient.rst
M doc/manual/source/conf.py
M doc/manual/source/config.rst
M doc/manual/source/experiment/range.rst
M doc/manual/source/export_legacy.rst
M doc/manual/source/fe_match/fe_match_main.rst
M doc/manual/source/fe_match/fe_match_simulate.rst
M doc/manual/source/ga_initialize.rst
M doc/manual/source/grid_editor.rst
M doc/manual/source/manage_data.rst
M doc/manual/source/mwl_spectra.rst
M doc/manual/source/mwlr_viewer.rst
M doc/manual/source/pcsa/pcsa_analys.rst
M doc/manual/source/requirements.txt
M doc/manual/source/us_project.rst
M doc/manual/source/vhw_combine.rst
Log Message:
-----------
mod: migrate to sphinx-design from subfigure
Commit: 8318d566a89cb3e06093e1d79d56d11d3488103a
https://github.com/ehb54/ultrascan3/commit/8318d566a89cb3e06093e1d79d56d11d3488103a
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-02-26 (Thu, 26 Feb 2026)
Changed paths:
M .gitignore
M CMakeLists.txt
M CMakePresets.json
R admin/cmake/toolchain-macos.cmake
A admin/cmake/toolchain.cmake
A admin/cmake/triplets/arm64-linux.cmake
A admin/cmake/triplets/arm64-windows.cmake
A etc/icons/make-icons.sh
A etc/icons/us3-icon-master-512.png
M etc/us3-icon-128x128.ico
M etc/us3-icon-128x128.png
M etc/us3-icon-32x32.png
M etc/us3-icon-48x48.ico
M etc/us3-icon-48x48.png
M etc/us3-icon.icns
M gui/CMakeLists.txt
M gui/images/us3-icon-128x128.png
M gui/images/us3-icon-16x16.png
M gui/images/us3-icon-256x256.png
M gui/images/us3-icon-32x32.png
M gui/images/us3-icon-48x48.png
M gui/images/us3-icon-512x512.png
M gui/images/us3-icon-64x64.png
M programs/us/CMakeLists.txt
M qwtplot3d/include/qwt3d_openglhelper.h
A scripts/build.bat
A scripts/build.ps1
M scripts/build.sh
M vcpkg.json
Log Message:
-----------
Merge branch 'main' into 527-enhancement-sphinx-migration-2
Commit: 89b7691a714d92e99e335e23378d225aa3b1b536
https://github.com/ehb54/ultrascan3/commit/89b7691a714d92e99e335e23378d225aa3b1b536
Author: ehb54 <brookes at uthscsa.edu>
Date: 2026-02-26 (Thu, 26 Feb 2026)
Changed paths:
M programs/us/revision.sh
Log Message:
-----------
fix revision.sh checks osx/linux compat.
Commit: 572bb723ed591be3225aacbdbc387c93c17ca792
https://github.com/ehb54/ultrascan3/commit/572bb723ed591be3225aacbdbc387c93c17ca792
Author: emre brookes <ehb54 at users.noreply.github.com>
Date: 2026-02-26 (Thu, 26 Feb 2026)
Changed paths:
M gui/us_spectrodata.h
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_ddist_combine.h
M programs/us_ga_init/us_ga_init.cpp
M programs/us_ga_init/us_ga_init.h
M programs/us_ga_init/us_solutedata.cpp
M programs/us_integral/us_integral.cpp
M programs/us_integral/us_integral.h
M programs/us_modelmetrics/us_modelmetrics.cpp
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
Log Message:
-----------
Merge branch 'main' into ehb54-issue-670
Commit: 85100ef73842bc75a8f210f7b9038301adae82db
https://github.com/ehb54/ultrascan3/commit/85100ef73842bc75a8f210f7b9038301adae82db
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-02-27 (Fri, 27 Feb 2026)
Changed paths:
M gui/us_spectrodata.h
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_ddist_combine.h
M programs/us_ga_init/us_ga_init.cpp
M programs/us_ga_init/us_ga_init.h
M programs/us_ga_init/us_solutedata.cpp
M programs/us_integral/us_integral.cpp
M programs/us_integral/us_integral.h
M programs/us_modelmetrics/us_modelmetrics.cpp
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
Log Message:
-----------
Merge branch 'main' into 527-enhancement-sphinx-migration-2
Commit: 7f63285b165bc88c2a317f9f368082e0d24d8861
https://github.com/ehb54/ultrascan3/commit/7f63285b165bc88c2a317f9f368082e0d24d8861
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-02-28 (Sat, 28 Feb 2026)
Changed paths:
M .gitignore
M CMakeLists.txt
A admin/cmake/MacDeploy.cmake
R buildsys/vcpkg/overlay-ports/qt5-tools/fix-pkgconfig-qt5uiplugin-not-found.patch
R buildsys/vcpkg/overlay-ports/qt5-tools/fix-spawnvp-argv.patch
R buildsys/vcpkg/overlay-ports/qt5-tools/libclang.patch
R buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
R buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
M doc/manual/CMakeLists.txt
A doc/manual/StageAssistant.cmake
M doc/manual/source/mwl_spectra.rst
M gui/CMakeLists.txt
M gui/us_help.cpp
M programs/us_helpdaemon/us_helpdaemon.cpp
M qwtplot3d/CMakeLists.txt
M scripts/build.sh
M vcpkg.json
Log Message:
-----------
fix: fix qt help search and implement dmg
Commit: 8e3d67b30d1a4eaf6faf0d18d80a835288ee5ae7
https://github.com/ehb54/ultrascan3/commit/8e3d67b30d1a4eaf6faf0d18d80a835288ee5ae7
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-02-28 (Sat, 28 Feb 2026)
Changed paths:
M .gitignore
M CMakeLists.txt
M CMakePresets.json
R admin/cmake/toolchain-macos.cmake
A admin/cmake/toolchain.cmake
A admin/cmake/triplets/arm64-linux.cmake
A admin/cmake/triplets/arm64-windows.cmake
A etc/icons/make-icons.sh
A etc/icons/us3-icon-master-512.png
M etc/us3-icon-128x128.ico
M etc/us3-icon-128x128.png
M etc/us3-icon-32x32.png
M etc/us3-icon-48x48.ico
M etc/us3-icon-48x48.png
M etc/us3-icon.icns
M gui/CMakeLists.txt
M gui/images/us3-icon-128x128.png
M gui/images/us3-icon-16x16.png
M gui/images/us3-icon-256x256.png
M gui/images/us3-icon-32x32.png
M gui/images/us3-icon-48x48.png
M gui/images/us3-icon-512x512.png
M gui/images/us3-icon-64x64.png
M gui/us_spectrodata.h
M programs/us/CMakeLists.txt
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_ddist_combine.h
M programs/us_ga_init/us_ga_init.cpp
M programs/us_ga_init/us_ga_init.h
M programs/us_ga_init/us_solutedata.cpp
M programs/us_integral/us_integral.cpp
M programs/us_integral/us_integral.h
M programs/us_modelmetrics/us_modelmetrics.cpp
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
M programs/us_pseudo3d_combine/us_pseudo3d_combine.h
M qwtplot3d/include/qwt3d_openglhelper.h
A scripts/build.bat
A scripts/build.ps1
M scripts/build.sh
M vcpkg.json
Log Message:
-----------
Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2
# Conflicts:
# .gitignore
# scripts/build.sh
Commit: ef3356b450a93ec526f92ee27da0a9bfcfa9c04a
https://github.com/ehb54/ultrascan3/commit/ef3356b450a93ec526f92ee27da0a9bfcfa9c04a
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-01 (Sun, 01 Mar 2026)
Changed paths:
M LICENSE.txt
Log Message:
-----------
fix: text was original utf-8 so quotes became questions marks with ascii tool. Changed ? to ascii quotes.
Commit: 82c2dc2269b90376cf1f69ca3f88b4bee38c641e
https://github.com/ehb54/ultrascan3/commit/82c2dc2269b90376cf1f69ca3f88b4bee38c641e
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-02 (Mon, 02 Mar 2026)
Changed paths:
R admin/cmake/MacDeploy.cmake
A admin/cmake/packaging/macos/MacDeploy.cmake
A admin/cmake/packaging/macos/MacOsPkg.cmake
A pkg/macos/component.plist
A pkg/macos/distribution.xml.in
A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist
A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3
A pkg/macos/postinstall
A pkg/macos/preinstall
A pkg/macos/resources/Welcome.txt.in
A pkg/macos/resources/background.png
A pkg/macos/ultrascan_sysctl.plist
A pkg/macos/uninstall.sh
M scripts/build.sh
Log Message:
-----------
add: launcher and packaging step
Commit: 88ef4e481d1b4ea751d997b156e3782f1befce93
https://github.com/ehb54/ultrascan3/commit/88ef4e481d1b4ea751d997b156e3782f1befce93
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-02 (Mon, 02 Mar 2026)
Changed paths:
M CMakeLists.txt
M CMakePresets.json
M admin/cmake/packaging/macos/MacDeploy.cmake
M admin/cmake/toolchain.cmake
M doc/manual/CMakeLists.txt
M doc/manual/StageAssistant.cmake
Log Message:
-----------
add: working qt6 build and install
Commit: 04583d8a1b0bcf01875f31b93a12343610284126
https://github.com/ehb54/ultrascan3/commit/04583d8a1b0bcf01875f31b93a12343610284126
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-04 (Wed, 04 Mar 2026)
Changed paths:
M CMakeLists.txt
A admin/cmake/packaging/windows/WinDeploy.cmake
A admin/cmake/packaging/windows/WinPkg.cmake
Log Message:
-----------
add: windows installer
Commit: 20b958cec1d253988daedd88a2fec65efd28448d
https://github.com/ehb54/ultrascan3/commit/20b958cec1d253988daedd88a2fec65efd28448d
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-04 (Wed, 04 Mar 2026)
Changed paths:
M scripts/build.ps1
Log Message:
-----------
add: pkg command to build.ps1
Commit: 2698e05dd320a374785cab43ed05a52db3c5c3a7
https://github.com/ehb54/ultrascan3/commit/2698e05dd320a374785cab43ed05a52db3c5c3a7
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-04 (Wed, 04 Mar 2026)
Changed paths:
M admin/cmake/packaging/windows/WinPkg.cmake
M scripts/build.ps1
Log Message:
-----------
fix: missing programs in installer package
Commit: 499648d1ea27751d008981e0d9f1447cfbef7072
https://github.com/ehb54/ultrascan3/commit/499648d1ea27751d008981e0d9f1447cfbef7072
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-04 (Wed, 04 Mar 2026)
Changed paths:
M CMakeLists.txt
M scripts/build.ps1
Log Message:
-----------
fix: missing sphinx on windows build
Commit: b2c2afd33a8ed941e547021628bcb32abea1675a
https://github.com/ehb54/ultrascan3/commit/b2c2afd33a8ed941e547021628bcb32abea1675a
Author: emre brookes <ehb54 at users.noreply.github.com>
Date: 2026-03-05 (Thu, 05 Mar 2026)
Changed paths:
R README.linguist
M etc/etc_belongs_list.txt
R etc/us3-GMP-icon-128x128.ico
M etc/us3-GMP-icon-128x128.png
R etc/us3-GMP-icon-128x128.xpm
R etc/us3-GMP-icon-32x32.ico
R etc/us3-GMP-icon-32x32.png
R etc/us3-GMP-icon-32x32.xpm
R etc/us3-GMP-icon-48x48.ico
R etc/us3-GMP-icon-48x48.png
R etc/us3-GMP-icon-48x48.xpm
M gui/libus_gui.pro
M programs/us/us.pro
R programs/us/us_de_DE.ts
M programs/us_config/us_config.pro
R propignore
R proppng
R proptext
R qwtplot3d/lingua_de.ts
M test/utils/test_us_crypto.cpp
M utils/libus_utils.pro
M utils/us_crypto.cpp
M utils/us_crypto.h
Log Message:
-----------
Merge branch 'main' into ehb54-issue-670
Commit: 6a9245189a1804e4557df78035f6f4401a5883ea
https://github.com/ehb54/ultrascan3/commit/6a9245189a1804e4557df78035f6f4401a5883ea
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-05 (Thu, 05 Mar 2026)
Changed paths:
M doc/manual/Makefile
M doc/manual/source/2dsa/2dsa_adv.rst
M doc/manual/source/2dsa/2dsa_analys.rst
M doc/manual/source/2dsa/2dsa_main.rst
M doc/manual/source/2dsa/index.rst
M doc/manual/source/3d_plot.rst
R doc/manual/source/_static/custom.css
R doc/manual/source/_static/images/2dsa_3dplot.png
R doc/manual/source/_static/images/2dsa_advan.png
R doc/manual/source/_static/images/2dsa_analvv.png
R doc/manual/source/_static/images/2dsa_analys.png
R doc/manual/source/_static/images/2dsa_main-c.png
R doc/manual/source/_static/images/2dsa_main-o.png
R doc/manual/source/_static/images/2dsa_resplot.png
R doc/manual/source/_static/images/D20W_bar.png
R doc/manual/source/_static/images/MW-bar.png
R doc/manual/source/_static/images/RINplot.png
R doc/manual/source/_static/images/TINplot.png
R doc/manual/source/_static/images/UltraScan-logo.png
R doc/manual/source/_static/images/add_RIN-TIN.png
R doc/manual/source/_static/images/add_RIN.png
R doc/manual/source/_static/images/add_TIN.png
R doc/manual/source/_static/images/advanced_config.png
R doc/manual/source/_static/images/analyte_details.png
R doc/manual/source/_static/images/analyte_edit.png
R doc/manual/source/_static/images/analyte_edit_spec.png
R doc/manual/source/_static/images/analyte_new_sequence.png
R doc/manual/source/_static/images/analyte_newc.png
R doc/manual/source/_static/images/analyte_newd.png
R doc/manual/source/_static/images/analyte_newp.png
R doc/manual/source/_static/images/analyte_selectc.png
R doc/manual/source/_static/images/analyte_selectd.png
R doc/manual/source/_static/images/analyte_selectp.png
R doc/manual/source/_static/images/analyte_sequence.png
R doc/manual/source/_static/images/analyte_settings.png
R doc/manual/source/_static/images/analyte_spec-gui.png
R doc/manual/source/_static/images/analyte_specmenu.png
R doc/manual/source/_static/images/analyte_spectrum.png
R doc/manual/source/_static/images/analytes.png
R doc/manual/source/_static/images/associations.png
R doc/manual/source/_static/images/astfem_sim.png
R doc/manual/source/_static/images/bad_grid.png
R doc/manual/source/_static/images/beck_convert-2.png
R doc/manual/source/_static/images/beck_converter.png
R doc/manual/source/_static/images/bitmap.png
R doc/manual/source/_static/images/buffer_edit.png
R doc/manual/source/_static/images/buffer_edit_setting.png
R doc/manual/source/_static/images/buffer_edit_spectrum.png
R doc/manual/source/_static/images/buffer_info.png
R doc/manual/source/_static/images/buffer_manage_spectrum.png
R doc/manual/source/_static/images/buffer_new.png
R doc/manual/source/_static/images/buffer_new_spectrum.png
R doc/manual/source/_static/images/buffer_select.png
R doc/manual/source/_static/images/buffer_settings.png
R doc/manual/source/_static/images/buffer_spectrum.png
R doc/manual/source/_static/images/cfa_view-loadauc.png
R doc/manual/source/_static/images/cfa_view-loadraw.png
R doc/manual/source/_static/images/cfa_view-main.png
R doc/manual/source/_static/images/cfa_view-statsauc.png
R doc/manual/source/_static/images/cfa_view-statsraw.png
R doc/manual/source/_static/images/color-1.png
R doc/manual/source/_static/images/color-2.png
R doc/manual/source/_static/images/color-a.png
R doc/manual/source/_static/images/color-b.png
R doc/manual/source/_static/images/colorgrad1.png
R doc/manual/source/_static/images/colorgradient/col1_colgen.png
R doc/manual/source/_static/images/colorgradient/col1_colgen_Fe_match.png
R doc/manual/source/_static/images/colorgradient/col1_colgen_GA.png
R doc/manual/source/_static/images/colorgradient/col2_colgen.png
R doc/manual/source/_static/images/colorgradient/colorgrad.png
R doc/manual/source/_static/images/colorgradient/colorgradient_main.png
R doc/manual/source/_static/images/colorgradient/components.png
R doc/manual/source/_static/images/colorgradient/model_editor.png
R doc/manual/source/_static/images/combine_models-idedit.png
R doc/manual/source/_static/images/combine_models-save.png
R doc/manual/source/_static/images/combine_models.png
R doc/manual/source/_static/images/components.png
R doc/manual/source/_static/images/config.png
R doc/manual/source/_static/images/config1.png
R doc/manual/source/_static/images/config2.png
R doc/manual/source/_static/images/config_plot.png
R doc/manual/source/_static/images/convert-RIdata.png
R doc/manual/source/_static/images/convert-exclude.png
R doc/manual/source/_static/images/convert-experiment.png
R doc/manual/source/_static/images/convert-mwl.png
R doc/manual/source/_static/images/convert-seltrip.png
R doc/manual/source/_static/images/convert-subset.png
R doc/manual/source/_static/images/convert-tolerance.png
R doc/manual/source/_static/images/convert.png
R doc/manual/source/_static/images/custom_grid-1.png
R doc/manual/source/_static/images/custom_grid.png
R doc/manual/source/_static/images/data_converter.png
R doc/manual/source/_static/images/data_loader-edits.png
R doc/manual/source/_static/images/data_loader-trips.png
R doc/manual/source/_static/images/data_loader.png
R doc/manual/source/_static/images/database.png
R doc/manual/source/_static/images/ddist_combine-selrun.png
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M doc/manual/source/index.rst
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M doc/manual/source/temp.txt
M doc/manual/source/time_derivative.rst
M doc/manual/source/tmst_viewer.rst
M doc/manual/source/us_buoyancy.rst
M doc/manual/source/us_edit.rst
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M doc/manual/source/us_extinction.rst
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M doc/manual/source/us_spectrum.rst
M doc/manual/source/vhw_combine.rst
M doc/manual/source/vhw_distrib_plot.rst
M doc/manual/source/vhw_enhanced.rst
M doc/manual/source/xpn_viewer.rst
Log Message:
-----------
fix: change qthelp url to use manual instead of doc, use right project structure for images and update links
Commit: b33c9b1cddd853e103542e10c4328830fc59e944
https://github.com/ehb54/ultrascan3/commit/b33c9b1cddd853e103542e10c4328830fc59e944
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-06 (Fri, 06 Mar 2026)
Changed paths:
A admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
M admin/cmake/packaging/windows/WinDeploy.cmake
A admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
M doc/manual/CMakeLists.txt
R doc/manual/StageAssistant.cmake
M programs/us/CMakeLists.txt
M scripts/build.ps1
M scripts/build.sh
Log Message:
-----------
mod: windows and macos qt assistant fix
Commit: adb74a9f1e5a1e238c264228544137f56a4125b5
https://github.com/ehb54/ultrascan3/commit/adb74a9f1e5a1e238c264228544137f56a4125b5
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-06 (Fri, 06 Mar 2026)
Changed paths:
M scripts/build.ps1
Log Message:
-----------
fix: builddir set at the beginning
Commit: cea2ea0e77baf6dbcc9097b3062ede36ca70f800
https://github.com/ehb54/ultrascan3/commit/cea2ea0e77baf6dbcc9097b3062ede36ca70f800
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-06 (Fri, 06 Mar 2026)
Changed paths:
M CMakeLists.txt
M doc/manual/CMakeLists.txt
M scripts/build.ps1
Log Message:
-----------
fix: windows path issues
Commit: 99a443309500f6d44fde4d4ba640770dfadeec24
https://github.com/ehb54/ultrascan3/commit/99a443309500f6d44fde4d4ba640770dfadeec24
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-06 (Fri, 06 Mar 2026)
Changed paths:
M admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
M doc/manual/CMakeLists.txt
M programs/us/CMakeLists.txt
M programs/us_helpdaemon/us_helpdaemon.cpp
Log Message:
-----------
fix: windows missing dll
Commit: 399ad6ee7636d4885c37adff02b723d1e6af48c9
https://github.com/ehb54/ultrascan3/commit/399ad6ee7636d4885c37adff02b723d1e6af48c9
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-07 (Sat, 07 Mar 2026)
Changed paths:
M CMakeLists.txt
A admin/cmake/packaging/linux/LinuxDeploy.cmake
A admin/cmake/packaging/linux/LinuxPkg.cmake
M scripts/build.sh
M utils/CMakeLists.txt
Log Message:
-----------
add: linux cmake packaging
Commit: c3215226c1e826bd7c620115a98fe3694cfe771e
https://github.com/ehb54/ultrascan3/commit/c3215226c1e826bd7c620115a98fe3694cfe771e
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-07 (Sat, 07 Mar 2026)
Changed paths:
M scripts/build.sh
M utils/us_memory.cpp
Log Message:
-----------
fix: cross platform page size
Commit: 16d1f75e51f11ad87c8f18b11e0a8a2bb755ea44
https://github.com/ehb54/ultrascan3/commit/16d1f75e51f11ad87c8f18b11e0a8a2bb755ea44
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-07 (Sat, 07 Mar 2026)
Changed paths:
M CMakeLists.txt
M admin/cmake/packaging/linux/LinuxDeploy.cmake
M scripts/build.ps1
M scripts/build.sh
M vcpkg.json
Log Message:
-----------
fix: assistant on linux
Commit: 5ab554ce68ae411774740695115c51b480df8c8a
https://github.com/ehb54/ultrascan3/commit/5ab554ce68ae411774740695115c51b480df8c8a
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-07 (Sat, 07 Mar 2026)
Changed paths:
M scripts/build.ps1
M scripts/build.sh
Log Message:
-----------
fix: vcpkg cache clear
Commit: a8b6e9963d8ed447dc737af6b4e3b69c3894945f
https://github.com/ehb54/ultrascan3/commit/a8b6e9963d8ed447dc737af6b4e3b69c3894945f
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-07 (Sat, 07 Mar 2026)
Changed paths:
M scripts/build.ps1
M scripts/build.sh
Log Message:
-----------
fix: vcpkg cache clear fix
Commit: 19f656eb532b2218880402623455153763d66d50
https://github.com/ehb54/ultrascan3/commit/19f656eb532b2218880402623455153763d66d50
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-07 (Sat, 07 Mar 2026)
Changed paths:
M CMakeLists.txt
Log Message:
-----------
fix: assistant now copied to bin on dev build
Commit: 75e0dc23de6fbdd330b322115c640d973e916d02
https://github.com/ehb54/ultrascan3/commit/75e0dc23de6fbdd330b322115c640d973e916d02
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-07 (Sat, 07 Mar 2026)
Changed paths:
M CMakeLists.txt
Log Message:
-----------
fix: assistant find update
Commit: 57f162e692e1a548bb426454e7e768e6f68b1bc4
https://github.com/ehb54/ultrascan3/commit/57f162e692e1a548bb426454e7e768e6f68b1bc4
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-07 (Sat, 07 Mar 2026)
Changed paths:
M CMakeLists.txt
M programs/us/us.cpp
Log Message:
-----------
fix: program path issue
Commit: 4700970e14e8ef1bf44b3fe91efd8dbcd15ba544
https://github.com/ehb54/ultrascan3/commit/4700970e14e8ef1bf44b3fe91efd8dbcd15ba544
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-07 (Sat, 07 Mar 2026)
Changed paths:
M CMakeLists.txt
Log Message:
-----------
fix: assistant not found
Commit: 14d6c7e63b928fb3a73559fdafa9426502eda98c
https://github.com/ehb54/ultrascan3/commit/14d6c7e63b928fb3a73559fdafa9426502eda98c
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-07 (Sat, 07 Mar 2026)
Changed paths:
M scripts/build.sh
Log Message:
-----------
fix: guard specific macos required tools
Commit: 1c6be4ed0464373db7a5a1a6a780f17bc12dbcf5
https://github.com/ehb54/ultrascan3/commit/1c6be4ed0464373db7a5a1a6a780f17bc12dbcf5
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-07 (Sat, 07 Mar 2026)
Changed paths:
M admin/cmake/packaging/linux/LinuxDeploy.cmake
Log Message:
-----------
fix: missing library in pkg
Commit: 216860fe02c9358e021e6a54b84aa2aa0e462a99
https://github.com/ehb54/ultrascan3/commit/216860fe02c9358e021e6a54b84aa2aa0e462a99
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-07 (Sat, 07 Mar 2026)
Changed paths:
M scripts/build.sh
Log Message:
-----------
fix: rcc error
Commit: be038ad56e172897c3f18b8a1319fced62a708a0
https://github.com/ehb54/ultrascan3/commit/be038ad56e172897c3f18b8a1319fced62a708a0
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-07 (Sat, 07 Mar 2026)
Changed paths:
M CMakeLists.txt
M admin/cmake/packaging/linux/LinuxDeploy.cmake
Log Message:
-----------
fix: update plugin directory
Commit: 87c38bbe59db529cf02b7887c7bfe57ebc8e62da
https://github.com/ehb54/ultrascan3/commit/87c38bbe59db529cf02b7887c7bfe57ebc8e62da
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-07 (Sat, 07 Mar 2026)
Changed paths:
M admin/cmake/packaging/linux/LinuxDeploy.cmake
Log Message:
-----------
add: readme
Commit: f4323bc883bb8996c6e627bfb9b8295063ef176f
https://github.com/ehb54/ultrascan3/commit/f4323bc883bb8996c6e627bfb9b8295063ef176f
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-08 (Sun, 08 Mar 2026)
Changed paths:
M CMakeLists.txt
M CMakePresets.json
M admin/cmake/GenerateVersion.cmake
A admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
A admin/cmake/packaging/linux/LinuxHpcPkg.cmake
A admin/cmake/packaging/macos/MacHpcDeploy.cmake
A admin/cmake/packaging/macos/MacHpcPkg.cmake
M programs/CMakeLists.txt
M programs/us_mpi_analysis/2dsa_worker.cpp
M programs/us_mpi_analysis/CMakeLists.txt
M programs/us_mpi_analysis/pcsa_worker.cpp
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M scripts/build.sh
Log Message:
-----------
fix: hpc build
Commit: c515903ce23bec6067e47ed10ae663518f3de230
https://github.com/ehb54/ultrascan3/commit/c515903ce23bec6067e47ed10ae663518f3de230
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-08 (Sun, 08 Mar 2026)
Changed paths:
M scripts/build.ps1
M scripts/build.sh
Log Message:
-----------
mod: use all cores with CI runners
Commit: 7a8a012754d242634bca20501e1a1c94be231d6c
https://github.com/ehb54/ultrascan3/commit/7a8a012754d242634bca20501e1a1c94be231d6c
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-08 (Sun, 08 Mar 2026)
Changed paths:
M CMakePresets.json
M scripts/build.ps1
M scripts/build.sh
Log Message:
-----------
fix: CI runners and hpc build
Commit: 5277352caa620430b2bf8a580f9f10d43218d930
https://github.com/ehb54/ultrascan3/commit/5277352caa620430b2bf8a580f9f10d43218d930
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-08 (Sun, 08 Mar 2026)
Changed paths:
M scripts/build.sh
Log Message:
-----------
fix: not all dependencies found
Commit: 60b1b16425fcda080aea3bfac20f1abad9e8bc32
https://github.com/ehb54/ultrascan3/commit/60b1b16425fcda080aea3bfac20f1abad9e8bc32
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-08 (Sun, 08 Mar 2026)
Changed paths:
M scripts/build.sh
Log Message:
-----------
fix: dependenies added
Commit: 3b29d9afdd3d29c7e33af7f0b989ccf1c642bc8c
https://github.com/ehb54/ultrascan3/commit/3b29d9afdd3d29c7e33af7f0b989ccf1c642bc8c
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-09 (Mon, 09 Mar 2026)
Changed paths:
A scripts/bootstrap-deps.sh
A scripts/bootstrap-macos.sh
A scripts/bootstrap-windows.ps1
A scripts/bootstrap.bat
M scripts/build.ps1
M scripts/build.sh
Log Message:
-----------
fix: bootstrap deps
Commit: 4975707ad3f001539ceeea7d716043118c23d07a
https://github.com/ehb54/ultrascan3/commit/4975707ad3f001539ceeea7d716043118c23d07a
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-09 (Mon, 09 Mar 2026)
Changed paths:
A buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
A buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
M scripts/bootstrap-deps.sh
Log Message:
-----------
fix: qt5 tools overlay
Commit: e7e0613e5d7d234f835e4e9490416e0a7f5b9803
https://github.com/ehb54/ultrascan3/commit/e7e0613e5d7d234f835e4e9490416e0a7f5b9803
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-09 (Mon, 09 Mar 2026)
Changed paths:
M scripts/bootstrap-deps.sh
M scripts/bootstrap-macos.sh
M scripts/build.sh
A us-build
Log Message:
-----------
add: bash wrapper
Commit: b93b52b3acb64a650854a16f3983473f49becee9
https://github.com/ehb54/ultrascan3/commit/b93b52b3acb64a650854a16f3983473f49becee9
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-09 (Mon, 09 Mar 2026)
Changed paths:
M scripts/build.ps1
Log Message:
-----------
mod: make profile positional for powershell
Commit: dfec7b06f5af8e9ad31d7b4c682197a103bd5fb1
https://github.com/ehb54/ultrascan3/commit/dfec7b06f5af8e9ad31d7b4c682197a103bd5fb1
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-09 (Mon, 09 Mar 2026)
Changed paths:
M scripts/bootstrap-windows.ps1
M scripts/build.bat
Log Message:
-----------
fix: convert -- pkg to - pkg for windows
Commit: 2f98f90faa5b640815d571359919c09034a266c1
https://github.com/ehb54/ultrascan3/commit/2f98f90faa5b640815d571359919c09034a266c1
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-09 (Mon, 09 Mar 2026)
Changed paths:
M scripts/bootstrap-windows.ps1
Log Message:
-----------
fix: getwin
Commit: 7249d6b2d508075f65d61b2643639c789db68d8e
https://github.com/ehb54/ultrascan3/commit/7249d6b2d508075f65d61b2643639c789db68d8e
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-09 (Mon, 09 Mar 2026)
Changed paths:
M scripts/bootstrap-windows.ps1
Log Message:
-----------
fix: add chocolatey fallback for ci
Commit: fd116b43987cda26a351438dcd70082a7c27ce17
https://github.com/ehb54/ultrascan3/commit/fd116b43987cda26a351438dcd70082a7c27ce17
Author: emre brookes <ehb54 at users.noreply.github.com>
Date: 2026-03-10 (Tue, 10 Mar 2026)
Changed paths:
M gui/us_convert_gui.cpp
M gui/us_convert_gui.h
M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.h
M test/utils/test_us_time_state.cpp
M utils/us_astfem_math.cpp
M utils/us_astfem_math.h
M utils/us_cfa_data.cpp
M utils/us_time_state.cpp
M utils/us_time_state.h
M utils/us_xpn_data.cpp
Log Message:
-----------
Merge branch 'main' into ehb54-issue-670
Commit: 45140eeddd64e45d6b5c87061f79c9aefc3ce25e
https://github.com/ehb54/ultrascan3/commit/45140eeddd64e45d6b5c87061f79c9aefc3ce25e
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-11 (Wed, 11 Mar 2026)
Changed paths:
M buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
M programs/us/revision.sh
M scripts/build.ps1
Log Message:
-----------
fix: windows CI vcpkg cache usage
Commit: 1ec6ec52d283b6c710abe095ebcad82139a64ae3
https://github.com/ehb54/ultrascan3/commit/1ec6ec52d283b6c710abe095ebcad82139a64ae3
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-11 (Wed, 11 Mar 2026)
Changed paths:
M CMakePresets.json
M scripts/build.sh
Log Message:
-----------
add: macos intel build
Commit: 39ad33c5c781b0f007822456803df7d591795fe7
https://github.com/ehb54/ultrascan3/commit/39ad33c5c781b0f007822456803df7d591795fe7
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-11 (Wed, 11 Mar 2026)
Changed paths:
M scripts/build.ps1
Log Message:
-----------
fix: vcpkg CI handling
Commit: 7fad3a4dfaa187ad4eb94554cedbe3ec6cf56773
https://github.com/ehb54/ultrascan3/commit/7fad3a4dfaa187ad4eb94554cedbe3ec6cf56773
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-11 (Wed, 11 Mar 2026)
Changed paths:
M programs/us_mpi_analysis/revision.sh
Log Message:
-----------
fix: change revision to git_revision to be consistent with other programs
Commit: b4417a6bfd0cfcc840668d21e88718e957734e47
https://github.com/ehb54/ultrascan3/commit/b4417a6bfd0cfcc840668d21e88718e957734e47
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-03-11 (Wed, 11 Mar 2026)
Changed paths:
R README.linguist
M etc/etc_belongs_list.txt
R etc/us3-GMP-icon-128x128.ico
M etc/us3-GMP-icon-128x128.png
R etc/us3-GMP-icon-128x128.xpm
R etc/us3-GMP-icon-32x32.ico
R etc/us3-GMP-icon-32x32.png
R etc/us3-GMP-icon-32x32.xpm
R etc/us3-GMP-icon-48x48.ico
R etc/us3-GMP-icon-48x48.png
R etc/us3-GMP-icon-48x48.xpm
M gui/libus_gui.pro
M gui/us_convert_gui.cpp
M gui/us_convert_gui.h
M programs/us/us.pro
R programs/us/us_de_DE.ts
M programs/us_config/us_config.pro
M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.h
R propignore
R proppng
R proptext
R qwtplot3d/lingua_de.ts
M test/utils/test_us_crypto.cpp
M test/utils/test_us_time_state.cpp
M utils/libus_utils.pro
M utils/us_astfem_math.cpp
M utils/us_astfem_math.h
M utils/us_cfa_data.cpp
M utils/us_crypto.cpp
M utils/us_crypto.h
M utils/us_time_state.cpp
M utils/us_time_state.h
M utils/us_xpn_data.cpp
Log Message:
-----------
Merge branch 'main' into 527-enhancement-sphinx-migration-2
Commit: f0c8ede548bfb3a6f2380059dd1aacf09c6a7883
https://github.com/ehb54/ultrascan3/commit/f0c8ede548bfb3a6f2380059dd1aacf09c6a7883
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-11 (Wed, 11 Mar 2026)
Changed paths:
M scripts/bootstrap-macos.sh
Log Message:
-----------
fix: add missing dependencies
Commit: 09eeb4bec49931c943f732f024f1166b882c3e3a
https://github.com/ehb54/ultrascan3/commit/09eeb4bec49931c943f732f024f1166b882c3e3a
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-11 (Wed, 11 Mar 2026)
Changed paths:
R README.linguist
M etc/etc_belongs_list.txt
R etc/us3-GMP-icon-128x128.ico
M etc/us3-GMP-icon-128x128.png
R etc/us3-GMP-icon-128x128.xpm
R etc/us3-GMP-icon-32x32.ico
R etc/us3-GMP-icon-32x32.png
R etc/us3-GMP-icon-32x32.xpm
R etc/us3-GMP-icon-48x48.ico
R etc/us3-GMP-icon-48x48.png
R etc/us3-GMP-icon-48x48.xpm
M gui/libus_gui.pro
M gui/us_convert_gui.cpp
M gui/us_convert_gui.h
M programs/us/us.pro
R programs/us/us_de_DE.ts
M programs/us_config/us_config.pro
M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.h
R propignore
R proppng
R proptext
R qwtplot3d/lingua_de.ts
M test/utils/test_us_crypto.cpp
M test/utils/test_us_time_state.cpp
M utils/libus_utils.pro
M utils/us_astfem_math.cpp
M utils/us_astfem_math.h
M utils/us_cfa_data.cpp
M utils/us_crypto.cpp
M utils/us_crypto.h
M utils/us_time_state.cpp
M utils/us_time_state.h
M utils/us_xpn_data.cpp
Log Message:
-----------
Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2
Commit: 51ba58286eaaa41af877ff9330d19560633e1c16
https://github.com/ehb54/ultrascan3/commit/51ba58286eaaa41af877ff9330d19560633e1c16
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-11 (Wed, 11 Mar 2026)
Changed paths:
M scripts/bootstrap-macos.sh
Log Message:
-----------
fix: add missing dependencies
Commit: 21a5f4a7ad52a67040b9426ed30a082038813498
https://github.com/ehb54/ultrascan3/commit/21a5f4a7ad52a67040b9426ed30a082038813498
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-11 (Wed, 11 Mar 2026)
Changed paths:
M scripts/build.sh
Log Message:
-----------
mod: reduce linux disk space usage
Commit: 12b7e30a17e5c86f8e9d4960f7e8da86d67b3b4f
https://github.com/ehb54/ultrascan3/commit/12b7e30a17e5c86f8e9d4960f7e8da86d67b3b4f
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-11 (Wed, 11 Mar 2026)
Changed paths:
M scripts/build.sh
Log Message:
-----------
mod: removed vcpkg folder creation
Commit: ece15a944fb55077213717e00f084056004367a7
https://github.com/ehb54/ultrascan3/commit/ece15a944fb55077213717e00f084056004367a7
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-11 (Wed, 11 Mar 2026)
Changed paths:
M admin/cmake/packaging/windows/WinDeploy.cmake
Log Message:
-----------
mod: change qt warnings an error to force build to stop
Commit: 80474c759ff865d72c8c6043ba64d38bf98e1e15
https://github.com/ehb54/ultrascan3/commit/80474c759ff865d72c8c6043ba64d38bf98e1e15
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-12 (Thu, 12 Mar 2026)
Changed paths:
M scripts/build.sh
Log Message:
-----------
mod: reduce to 2 cores for ubuntu
Commit: e9f0952dea5d8bb82a866082b546997a3e457ec4
https://github.com/ehb54/ultrascan3/commit/e9f0952dea5d8bb82a866082b546997a3e457ec4
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-03-12 (Thu, 12 Mar 2026)
Changed paths:
M gui/us_extinction_gui.cpp
M gui/us_extinction_gui.h
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_query_rmsd/us_query_rmsd.h
M programs/us_ramp/us_ramp_gui.h
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
Log Message:
-----------
Merge branch 'main' into ehb54-issue-670
Commit: c4af75ba6a8e299d819034f87528f9d6997e469f
https://github.com/ehb54/ultrascan3/commit/c4af75ba6a8e299d819034f87528f9d6997e469f
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-03-12 (Thu, 12 Mar 2026)
Changed paths:
M gui/us_extinction_gui.cpp
M gui/us_extinction_gui.h
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_query_rmsd/us_query_rmsd.h
M programs/us_ramp/us_ramp_gui.h
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
Log Message:
-----------
Merge branch 'main' into 527-enhancement-sphinx-migration-2
Commit: 0f81d3f0d1fb567b1e570ed90147a17f49e57c1f
https://github.com/ehb54/ultrascan3/commit/0f81d3f0d1fb567b1e570ed90147a17f49e57c1f
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-12 (Thu, 12 Mar 2026)
Changed paths:
M CMakeLists.txt
M CMakePresets.json
M admin/cmake/packaging/windows/WinDeploy.cmake
R scripts/bootstrap-deps.sh
A scripts/bootstrap-linux.sh
M scripts/bootstrap-macos.sh
M scripts/build.sh
M utils/CMakeLists.txt
M vcpkg.json
Log Message:
-----------
mod: move checks to bootstrap
Commit: 4ff50388194860753c3e8bc4d697e944ce0f1641
https://github.com/ehb54/ultrascan3/commit/4ff50388194860753c3e8bc4d697e944ce0f1641
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-12 (Thu, 12 Mar 2026)
Changed paths:
M gui/us_extinction_gui.cpp
M gui/us_extinction_gui.h
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_query_rmsd/us_query_rmsd.h
M programs/us_ramp/us_ramp_gui.h
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
Log Message:
-----------
Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2
Commit: 82349a16124679984a45c562feb3f2583dbdb531
https://github.com/ehb54/ultrascan3/commit/82349a16124679984a45c562feb3f2583dbdb531
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-13 (Fri, 13 Mar 2026)
Changed paths:
M scripts/build.sh
Log Message:
-----------
mod: add platform safe check
Commit: 8a2d982f8e8906a85bfe363487622d59a1ff361e
https://github.com/ehb54/ultrascan3/commit/8a2d982f8e8906a85bfe363487622d59a1ff361e
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-03-14 (Sat, 14 Mar 2026)
Changed paths:
M gui/us_analyte_gui.cpp
M gui/us_plot3d.cpp
M programs/CMakeLists.txt
M programs/us/CMakeLists.txt
M utils/us_timer.h
M vcpkg.json
Log Message:
-----------
Merge branch 'main' into 527-enhancement-sphinx-migration-2
Commit: 6d361b64fc8f314fe8399f028d2c79ef9d0e417b
https://github.com/ehb54/ultrascan3/commit/6d361b64fc8f314fe8399f028d2c79ef9d0e417b
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-14 (Sat, 14 Mar 2026)
Changed paths:
M scripts/build.sh
Log Message:
-----------
mod: clean after build set
Commit: 5b81b9c41fc973670663047afba591d6edaa898c
https://github.com/ehb54/ultrascan3/commit/5b81b9c41fc973670663047afba591d6edaa898c
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-14 (Sat, 14 Mar 2026)
Changed paths:
M admin/cmake/packaging/windows/WinDeploy.cmake
Log Message:
-----------
fix: packaging
Commit: 10e620037c83dddc66d518ab28e33eb36c3e3c17
https://github.com/ehb54/ultrascan3/commit/10e620037c83dddc66d518ab28e33eb36c3e3c17
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-03-14 (Sat, 14 Mar 2026)
Changed paths:
M gui/us_analyte_gui.cpp
M gui/us_plot3d.cpp
M programs/CMakeLists.txt
M programs/us/CMakeLists.txt
M utils/us_timer.h
M vcpkg.json
Log Message:
-----------
Merge branch 'main' into ehb54-issue-670
Commit: 3afad49842a3c53daabf741428b683cb8e86837c
https://github.com/ehb54/ultrascan3/commit/3afad49842a3c53daabf741428b683cb8e86837c
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-03-15 (Sun, 15 Mar 2026)
Changed paths:
M programs/us_config/us_admin.cpp
Log Message:
-----------
Merge branch 'main' into 527-enhancement-sphinx-migration-2
Commit: afdf12344c5555d4130fa310bf352f2c27bbdadc
https://github.com/ehb54/ultrascan3/commit/afdf12344c5555d4130fa310bf352f2c27bbdadc
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-15 (Sun, 15 Mar 2026)
Changed paths:
A buildsys/vcpkg/overlay-ports/qttools.disable/devendor-litehtml.patch
A buildsys/vcpkg/overlay-ports/qttools.disable/portfile.cmake
A buildsys/vcpkg/overlay-ports/qttools.disable/vcpkg.json
A buildsys/vcpkg/overlay-ports/qttools.disable/windeployqt.debug.bat
R buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
R buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
R buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
R buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat
Log Message:
-----------
test remove qttools overlay
Commit: 691c2112f822e5f82f6f153dbb8d568663367a2c
https://github.com/ehb54/ultrascan3/commit/691c2112f822e5f82f6f153dbb8d568663367a2c
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-15 (Sun, 15 Mar 2026)
Changed paths:
M programs/us_config/us_admin.cpp
Log Message:
-----------
Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2
Commit: 5fbfc3b610b9edaa535c2cdde484daba5a1f6d23
https://github.com/ehb54/ultrascan3/commit/5fbfc3b610b9edaa535c2cdde484daba5a1f6d23
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-16 (Mon, 16 Mar 2026)
Changed paths:
M admin/cmake/packaging/windows/WinDeploy.cmake
A buildsys/vcpkg/overlay-ports/qt5-tools/fix-pkgconfig-qt5uiplugin-not-found.patch
A buildsys/vcpkg/overlay-ports/qt5-tools/fix-spawnvp-argv.patch
A buildsys/vcpkg/overlay-ports/qt5-tools/libclang.patch
M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
M buildsys/vcpkg/overlay-ports/qt5-tools/vcpkg.json
M scripts/bootstrap-windows.ps1
M scripts/build.ps1
Log Message:
-----------
fix: restore patch for qt5-tools
Commit: ee9314b8a10555d579148933ce5fb59dc77f25a5
https://github.com/ehb54/ultrascan3/commit/ee9314b8a10555d579148933ce5fb59dc77f25a5
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-16 (Mon, 16 Mar 2026)
Changed paths:
M admin/cmake/packaging/windows/WinDeploy.cmake
M scripts/bootstrap-windows.ps1
Log Message:
-----------
fix: nasm check and add supporting dlls to installation
Commit: f9860bd8d1ac6f5c5c4a4b0dd90e3cb7f09bd131
https://github.com/ehb54/ultrascan3/commit/f9860bd8d1ac6f5c5c4a4b0dd90e3cb7f09bd131
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-16 (Mon, 16 Mar 2026)
Changed paths:
M scripts/build.ps1
M vcpkg.json
Log Message:
-----------
mod: check path length is too long on qt 5
Commit: 4365eb02a1c29a38a42fe848da39deab69e67715
https://github.com/ehb54/ultrascan3/commit/4365eb02a1c29a38a42fe848da39deab69e67715
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-17 (Tue, 17 Mar 2026)
Changed paths:
R buildsys/vcpkg/overlay-ports/qttools.disable/devendor-litehtml.patch
R buildsys/vcpkg/overlay-ports/qttools.disable/portfile.cmake
R buildsys/vcpkg/overlay-ports/qttools.disable/vcpkg.json
R buildsys/vcpkg/overlay-ports/qttools.disable/windeployqt.debug.bat
Log Message:
-----------
del: remove unused overlay
Commit: efe1a2ba8b277a19ae50d1262c14239f9f9dac81
https://github.com/ehb54/ultrascan3/commit/efe1a2ba8b277a19ae50d1262c14239f9f9dac81
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-17 (Tue, 17 Mar 2026)
Changed paths:
M scripts/bootstrap-linux.sh
Log Message:
-----------
add: missing linux packages libsm-dev libice-dev
Commit: 84f1faaa0819a233d3023bd3ae0d75d2ccaf6430
https://github.com/ehb54/ultrascan3/commit/84f1faaa0819a233d3023bd3ae0d75d2ccaf6430
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-17 (Tue, 17 Mar 2026)
Changed paths:
A buildsys/vcpkg/overlay-ports/mpg123/fix-arm64-no-fpu-neon64.patch
A buildsys/vcpkg/overlay-ports/mpg123/have-fpu.diff
A buildsys/vcpkg/overlay-ports/mpg123/pkgconfig.diff
A buildsys/vcpkg/overlay-ports/mpg123/portfile.cmake
A buildsys/vcpkg/overlay-ports/mpg123/vcpkg.json
Log Message:
-----------
add: port overlay for linux arm fix
Commit: 501adedca88f7d331c3a70d62c04cc4992f86979
https://github.com/ehb54/ultrascan3/commit/501adedca88f7d331c3a70d62c04cc4992f86979
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-17 (Tue, 17 Mar 2026)
Changed paths:
M admin/cmake/packaging/macos/MacDeploy.cmake
M admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
A admin/cmake/packaging/macos/StageAssistantDev.cmake
M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
A buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
A buildsys/vcpkg/overlay-ports/qttools/port.data.cmake
A buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat
M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
M programs/us/CMakeLists.txt
M scripts/build.sh
Log Message:
-----------
add: overlay port for qttools
Commit: e1e93704ad79bf8d43c6c4eba74a4c90b1dc1fdf
https://github.com/ehb54/ultrascan3/commit/e1e93704ad79bf8d43c6c4eba74a4c90b1dc1fdf
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-03-17 (Tue, 17 Mar 2026)
Changed paths:
M gui/us_plot.cpp
M gui/us_plot.h
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
M test/utils/test_us_crypto.cpp
M utils/us_crypto.cpp
Log Message:
-----------
Merge branch 'main' into 527-enhancement-sphinx-migration-2
Commit: 81695e7ad3f97f7cd46fe42d8148a8911fc3fc43
https://github.com/ehb54/ultrascan3/commit/81695e7ad3f97f7cd46fe42d8148a8911fc3fc43
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-03-19 (Thu, 19 Mar 2026)
Changed paths:
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_experiment/us_proto_ranges.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
M utils/us_run_protocol.cpp
M utils/us_run_protocol.h
Log Message:
-----------
Merge branch 'main' into 527-enhancement-sphinx-migration-2
Commit: bed8960f5d491db022be512a82491fc248abcbf9
https://github.com/ehb54/ultrascan3/commit/bed8960f5d491db022be512a82491fc248abcbf9
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-19 (Thu, 19 Mar 2026)
Changed paths:
M CMakeLists.txt
M doc/manual/CMakeLists.txt
M doc/manual/README.md
M doc/manual/source/conf.py
M programs/us/CMakeLists.txt
Log Message:
-----------
mod: PR comments addressed
Commit: 5205cb5542bd366b63909189ac9691c6473fc071
https://github.com/ehb54/ultrascan3/commit/5205cb5542bd366b63909189ac9691c6473fc071
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-19 (Thu, 19 Mar 2026)
Changed paths:
M gui/us_plot.cpp
M gui/us_plot.h
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_experiment/us_proto_ranges.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
M test/utils/test_us_crypto.cpp
M utils/us_crypto.cpp
M utils/us_run_protocol.cpp
M utils/us_run_protocol.h
Log Message:
-----------
Merge remote-tracking branch 'origin/527-enhancement-sphinx-migration-2' into 527-enhancement-sphinx-migration-2
Commit: 76e772666ba74f76a6d525444b9c0cd8f9d01e76
https://github.com/ehb54/ultrascan3/commit/76e772666ba74f76a6d525444b9c0cd8f9d01e76
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-19 (Thu, 19 Mar 2026)
Changed paths:
M CMakeLists.txt
M doc/manual/CMakeLists.txt
Log Message:
-----------
fix: skip subdirectory doc/manual if hpc or documentation off
Commit: 05b438d52cffda88429e278cae66fead57b193ec
https://github.com/ehb54/ultrascan3/commit/05b438d52cffda88429e278cae66fead57b193ec
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-20 (Fri, 20 Mar 2026)
Changed paths:
M CMakePresets.json
M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
R doc/manual/source/conf.py-orig.081225
M gui/CMakeLists.txt
M programs/us_helpdaemon/us_helpdaemon.cpp
Log Message:
-----------
fix: Reformat CMakePresets.json to multi-line style; add US3_NO_DB=ON to all HPC
presets; fix GLU elseif(UNIX) branch; drop dead Windows assistant path check.
Commit: 21882cd1fd05a489de72b721e1e4bebaa8fb9ac5
https://github.com/ehb54/ultrascan3/commit/21882cd1fd05a489de72b721e1e4bebaa8fb9ac5
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-20 (Fri, 20 Mar 2026)
Changed paths:
M CMakeLists.txt
M doc/manual/CMakeLists.txt
M programs/us/CMakeLists.txt
Log Message:
-----------
fix: pr comments
Commit: 39a94736afc6e6b1450549833138c494fc1ff36b
https://github.com/ehb54/ultrascan3/commit/39a94736afc6e6b1450549833138c494fc1ff36b
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-20 (Fri, 20 Mar 2026)
Changed paths:
M doc/manual/Makefile
Log Message:
-----------
fix: make all moved to top
Commit: 55ad77b5ea4726efff74c2e3da2b763af7b12070
https://github.com/ehb54/ultrascan3/commit/55ad77b5ea4726efff74c2e3da2b763af7b12070
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-20 (Fri, 20 Mar 2026)
Changed paths:
M CMakeLists.txt
M CMakePresets.json
M doc/manual/CMakeLists.txt
Log Message:
-----------
fix: presets
Commit: 8aeda75b69a9c2d9df2af035ea7265bb93bdacef
https://github.com/ehb54/ultrascan3/commit/8aeda75b69a9c2d9df2af035ea7265bb93bdacef
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-21 (Sat, 21 Mar 2026)
Changed paths:
A admin/cmake/README.md
A admin/cmake/packaging/README.md
A pkg/macos/README.md
Log Message:
-----------
mod: readmes
Commit: 81c3a3a5d2a743645b19098027b58ecdc429d634
https://github.com/ehb54/ultrascan3/commit/81c3a3a5d2a743645b19098027b58ecdc429d634
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-03-22 (Sun, 22 Mar 2026)
Changed paths:
R doc/manual/source/2dsa/2dsa_adv.rst
R doc/manual/source/2dsa/2dsa_analys.rst
R doc/manual/source/2dsa/2dsa_main.rst
R doc/manual/source/2dsa/index.rst
R doc/manual/source/3d_plot.rst
R doc/manual/source/analyte/analyte_edit.rst
R doc/manual/source/analyte/analyte_new.rst
R doc/manual/source/analyte/analyte_select.rst
R doc/manual/source/analyte/analyte_settings.rst
R doc/manual/source/analyte/index.rst
R doc/manual/source/associations.rst
R doc/manual/source/astfem_sim.rst
R doc/manual/source/beckman_openauc.rst
R doc/manual/source/buffer/buffer_edit.rst
R doc/manual/source/buffer/buffer_new.rst
R doc/manual/source/buffer/buffer_select.rst
R doc/manual/source/buffer/buffer_settings.rst
R doc/manual/source/buffer/index.rst
R doc/manual/source/buoyancy_editor.rst
R doc/manual/source/colorgradient.rst
R doc/manual/source/combine_models.rst
R doc/manual/source/common_dialogs.rst
R doc/manual/source/components.rst
R doc/manual/source/config.rst
R doc/manual/source/convert.rst
R doc/manual/source/ddist_combine.rst
R doc/manual/source/dens_match.rst
R doc/manual/source/dmga_init.rst
R doc/manual/source/dmga_init_constr.rst
R doc/manual/source/experiment/cells.rst
R doc/manual/source/experiment/general.rst
R doc/manual/source/experiment/import.rst
R doc/manual/source/experiment/index.rst
R doc/manual/source/experiment/liveupdate.rst
R doc/manual/source/experiment/optics.rst
R doc/manual/source/experiment/range.rst
R doc/manual/source/experiment/rotor.rst
R doc/manual/source/experiment/solutions.rst
R doc/manual/source/experiment/speeds.rst
R doc/manual/source/experiment/submit.rst
R doc/manual/source/export_legacy.rst
R doc/manual/source/fe_match/fe_match_adv.rst
R doc/manual/source/fe_match/fe_match_main.rst
R doc/manual/source/fe_match/fe_match_simulate.rst
R doc/manual/source/fe_match/index.rst
R doc/manual/source/fit_meniscus.rst
R doc/manual/source/ga_initialize.rst
R doc/manual/source/gmp/gmp.rst
R doc/manual/source/gmp/gmp_audit_trail.rst
R doc/manual/source/gmp/gmp_automation.rst
R doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_experiment.rst
R doc/manual/source/gmp/gmp_data_acquisition/gmp_data_acquisition_gmp.rst
R doc/manual/source/gmp/gmp_data_acquisition/index.rst
R doc/manual/source/gmp/gmp_protocol_development.rst
R doc/manual/source/gmp/gmp_report_generator.rst
R doc/manual/source/gmp/gmp_signature.rst
R doc/manual/source/gmp/index.rst
R doc/manual/source/grid_editor.rst
R doc/manual/source/idist_combine.rst
R doc/manual/source/images/2dsa_3dplot.png
R doc/manual/source/images/2dsa_advan.png
R doc/manual/source/images/2dsa_analvv.png
R doc/manual/source/images/2dsa_analys.png
R doc/manual/source/images/2dsa_main-c.png
R doc/manual/source/images/2dsa_main-o.png
R doc/manual/source/images/2dsa_resplot.png
R doc/manual/source/images/D20W_bar.png
R doc/manual/source/images/MW-bar.png
R doc/manual/source/images/RINplot.png
R doc/manual/source/images/TINplot.png
R doc/manual/source/images/UltraScan-logo.png
R doc/manual/source/images/add_RIN-TIN.png
R doc/manual/source/images/add_RIN.png
R doc/manual/source/images/add_TIN.png
R doc/manual/source/images/advanced_config.png
R doc/manual/source/images/analyte_details.png
R doc/manual/source/images/analyte_edit.png
R doc/manual/source/images/analyte_edit_spec.png
R doc/manual/source/images/analyte_new_sequence.png
R doc/manual/source/images/analyte_newc.png
R doc/manual/source/images/analyte_newd.png
R doc/manual/source/images/analyte_newp.png
R doc/manual/source/images/analyte_selectc.png
R doc/manual/source/images/analyte_selectd.png
R doc/manual/source/images/analyte_selectp.png
R doc/manual/source/images/analyte_sequence.png
R doc/manual/source/images/analyte_settings.png
R doc/manual/source/images/analyte_spec-gui.png
R doc/manual/source/images/analyte_specmenu.png
R doc/manual/source/images/analyte_spectrum.png
R doc/manual/source/images/analytes.png
R doc/manual/source/images/associations.png
R doc/manual/source/images/astfem_sim.png
R doc/manual/source/images/bad_grid.png
R doc/manual/source/images/beck_convert-2.png
R doc/manual/source/images/beck_converter.png
R doc/manual/source/images/bitmap.png
R doc/manual/source/images/buffer_edit.png
R doc/manual/source/images/buffer_edit_setting.png
R doc/manual/source/images/buffer_edit_spectrum.png
R doc/manual/source/images/buffer_info.png
R doc/manual/source/images/buffer_manage_spectrum.png
R doc/manual/source/images/buffer_new.png
R doc/manual/source/images/buffer_new_spectrum.png
R doc/manual/source/images/buffer_select.png
R doc/manual/source/images/buffer_settings.png
R doc/manual/source/images/buffer_spectrum.png
R doc/manual/source/images/cfa_view-loadauc.png
R doc/manual/source/images/cfa_view-loadraw.png
R doc/manual/source/images/cfa_view-main.png
R doc/manual/source/images/cfa_view-statsauc.png
R doc/manual/source/images/cfa_view-statsraw.png
R doc/manual/source/images/color-1.png
R doc/manual/source/images/color-2.png
R doc/manual/source/images/color-a.png
R doc/manual/source/images/color-b.png
R doc/manual/source/images/colorgrad1.png
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Log Message:
-----------
mod: removed documentation.
Commit: f448548065ff12b1c240270de9d4827cf5f51a79
https://github.com/ehb54/ultrascan3/commit/f448548065ff12b1c240270de9d4827cf5f51a79
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-03-24 (Tue, 24 Mar 2026)
Changed paths:
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A admin/cmake/packaging/linux/LinuxHpcPkg.cmake
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R doc/manual/somo.body
A doc/manual/source/_static/css/custom.css
A doc/manual/source/_static/js/language_data.js
A doc/manual/source/_static/js/sphinx_highlight.js
A doc/manual/source/conf.py
A doc/manual/source/index.rst
A doc/manual/source/requirements.txt
R doc/manual/template.img.body
R doc/manual/tidy.conf
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R doc/manual/wrapped-images.lst
M gui/CMakeLists.txt
M gui/us_help.cpp
M makeall.sh
A pkg/macos/README.md
A pkg/macos/component.plist
A pkg/macos/distribution.xml.in
A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist
A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3
A pkg/macos/postinstall
A pkg/macos/preinstall
A pkg/macos/resources/Welcome.txt.in
A pkg/macos/resources/background.png
A pkg/macos/ultrascan_sysctl.plist
A pkg/macos/uninstall.sh
M programs/CMakeLists.txt
M programs/us/CMakeLists.txt
M programs/us/revision.sh
M programs/us/us.cpp
M programs/us_helpdaemon/us_helpdaemon.cpp
M programs/us_mpi_analysis/2dsa_worker.cpp
M programs/us_mpi_analysis/CMakeLists.txt
M programs/us_mpi_analysis/pcsa_worker.cpp
M programs/us_mpi_analysis/revision.sh
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M qwtplot3d/CMakeLists.txt
A scripts/bootstrap-linux.sh
A scripts/bootstrap-macos.sh
A scripts/bootstrap-windows.ps1
A scripts/bootstrap.bat
M scripts/build.bat
M scripts/build.ps1
M scripts/build.sh
A us-build
M utils/CMakeLists.txt
M utils/us_memory.cpp
M vcpkg.json
Log Message:
-----------
Merge pull request #374 from ehb54/527-enhancement-sphinx-migration-2
Integrate Sphinx Document Generation
Commit: 0a9196aea05b0dc1c6f984302c09ffefa32db302
https://github.com/ehb54/ultrascan3/commit/0a9196aea05b0dc1c6f984302c09ffefa32db302
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-03-24 (Tue, 24 Mar 2026)
Changed paths:
M .github/workflows/bump-version.yml
M .gitignore
M CMakeLists.txt
M CMakePresets.json
M LICENSE.txt
M README.manual
M admin/cmake/GenerateVersion.cmake
A admin/cmake/README.md
A admin/cmake/packaging/README.md
A admin/cmake/packaging/linux/LinuxDeploy.cmake
A admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
A admin/cmake/packaging/linux/LinuxHpcPkg.cmake
A admin/cmake/packaging/linux/LinuxPkg.cmake
A admin/cmake/packaging/macos/MacDeploy.cmake
A admin/cmake/packaging/macos/MacHpcDeploy.cmake
A admin/cmake/packaging/macos/MacHpcPkg.cmake
A admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
A admin/cmake/packaging/macos/MacOsPkg.cmake
A admin/cmake/packaging/macos/StageAssistantDev.cmake
A admin/cmake/packaging/windows/WinDeploy.cmake
A admin/cmake/packaging/windows/WinPkg.cmake
A admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
M admin/cmake/toolchain.cmake
A buildsys/vcpkg/overlay-ports/mpg123/fix-arm64-no-fpu-neon64.patch
A buildsys/vcpkg/overlay-ports/mpg123/have-fpu.diff
A buildsys/vcpkg/overlay-ports/mpg123/pkgconfig.diff
A buildsys/vcpkg/overlay-ports/mpg123/portfile.cmake
A buildsys/vcpkg/overlay-ports/mpg123/vcpkg.json
M buildsys/vcpkg/overlay-ports/qt5-tools/portfile.cmake
A buildsys/vcpkg/overlay-ports/qttools/devendor-litehtml.patch
A buildsys/vcpkg/overlay-ports/qttools/port.data.cmake
A buildsys/vcpkg/overlay-ports/qttools/portfile.cmake
A buildsys/vcpkg/overlay-ports/qttools/vcpkg.json
A buildsys/vcpkg/overlay-ports/qttools/windeployqt.debug.bat
M buildsys/vcpkg/overlay-ports/qwt-6-3-0-qt6/portfile.cmake
R doc/manual/2dsa/2dsa.body
R doc/manual/2dsa/2dsa_advan.body
R doc/manual/2dsa/2dsa_analvv.body
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M doc/manual/CMakeLists.txt
M doc/manual/Makefile
M doc/manual/README.md
R doc/manual/advanced_config.body
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A doc/manual/source/_static/css/custom.css
A doc/manual/source/_static/js/language_data.js
A doc/manual/source/_static/js/sphinx_highlight.js
A doc/manual/source/conf.py
A doc/manual/source/index.rst
A doc/manual/source/requirements.txt
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M gui/CMakeLists.txt
M gui/us_help.cpp
M gui/us_plot.cpp
M gui/us_plot.h
M makeall.sh
A pkg/macos/README.md
A pkg/macos/component.plist
A pkg/macos/distribution.xml.in
A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist
A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3
A pkg/macos/postinstall
A pkg/macos/preinstall
A pkg/macos/resources/Welcome.txt.in
A pkg/macos/resources/background.png
A pkg/macos/ultrascan_sysctl.plist
A pkg/macos/uninstall.sh
M programs/CMakeLists.txt
M programs/us/CMakeLists.txt
M programs/us/revision.sh
M programs/us/us.cpp
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_config/us_admin.cpp
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_experiment/us_proto_ranges.cpp
M programs/us_helpdaemon/us_helpdaemon.cpp
M programs/us_mpi_analysis/2dsa_worker.cpp
M programs/us_mpi_analysis/CMakeLists.txt
M programs/us_mpi_analysis/pcsa_worker.cpp
M programs/us_mpi_analysis/revision.sh
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
M qwtplot3d/CMakeLists.txt
A scripts/bootstrap-linux.sh
A scripts/bootstrap-macos.sh
A scripts/bootstrap-windows.ps1
A scripts/bootstrap.bat
M scripts/build.bat
M scripts/build.ps1
M scripts/build.sh
M test/utils/test_us_crypto.cpp
A us-build
M utils/CMakeLists.txt
M utils/us_crypto.cpp
M utils/us_memory.cpp
M utils/us_run_protocol.cpp
M utils/us_run_protocol.h
M vcpkg.json
Log Message:
-----------
Merge branch 'main' into ehb54-issue-670
Commit: a3d889c69f7012ff5840a86814780d3490d5ea2a
https://github.com/ehb54/ultrascan3/commit/a3d889c69f7012ff5840a86814780d3490d5ea2a
Author: emre brookes <ehb54 at users.noreply.github.com>
Date: 2026-03-24 (Tue, 24 Mar 2026)
Changed paths:
M programs/us/revision.sh
Log Message:
-----------
Merge pull request #377 from ehb54/ehb54-issue-670
fix revision.sh checks osx/linux compat.
Commit: aba103e8cab9d71929941aa888ae3aae0872e049
https://github.com/ehb54/ultrascan3/commit/aba103e8cab9d71929941aa888ae3aae0872e049
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2026-03-24 (Tue, 24 Mar 2026)
Changed paths:
M .github/workflows/bump-version.yml
M .gitignore
M CMakeLists.txt
M CMakePresets.json
M LICENSE.txt
M README.manual
M admin/cmake/GenerateVersion.cmake
A admin/cmake/README.md
A admin/cmake/packaging/README.md
A admin/cmake/packaging/linux/LinuxDeploy.cmake
A admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
A admin/cmake/packaging/linux/LinuxHpcPkg.cmake
A admin/cmake/packaging/linux/LinuxPkg.cmake
A admin/cmake/packaging/macos/MacDeploy.cmake
A admin/cmake/packaging/macos/MacHpcDeploy.cmake
A admin/cmake/packaging/macos/MacHpcPkg.cmake
A admin/cmake/packaging/macos/MacOsDeployQtAssistant.cmake
A admin/cmake/packaging/macos/MacOsPkg.cmake
A admin/cmake/packaging/macos/StageAssistantDev.cmake
A admin/cmake/packaging/windows/WinDeploy.cmake
A admin/cmake/packaging/windows/WinPkg.cmake
A admin/cmake/packaging/windows/WindowsDeployQtAssistant.cmake
M admin/cmake/toolchain.cmake
A buildsys/vcpkg/overlay-ports/mpg123/fix-arm64-no-fpu-neon64.patch
A buildsys/vcpkg/overlay-ports/mpg123/have-fpu.diff
A buildsys/vcpkg/overlay-ports/mpg123/pkgconfig.diff
A buildsys/vcpkg/overlay-ports/mpg123/portfile.cmake
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R doc/manual/load/load_auc.body
R doc/manual/load/load_colormap.body
R doc/manual/load/load_model_dis-MID.body
R doc/manual/load/load_model_distrib.body
R doc/manual/load/load_noise.body
R doc/manual/load/load_noise_details.body
R doc/manual/mainstyle.css
R doc/manual/make-docs.sh
R doc/manual/make-html.sh
R doc/manual/make-qdocs.sh
R doc/manual/make-wraps.sh
R doc/manual/manage_data.body
R doc/manual/manage_data_cmenu.body
R doc/manual/manage_data_thelp.body
R doc/manual/manual.qhcp
R doc/manual/manual.qhp
R doc/manual/master_pw.body
R doc/manual/model_editor.body
R doc/manual/mwlr_view_load.body
R doc/manual/mwlr_view_pltctrl.body
R doc/manual/mwlr_viewer.body
R doc/manual/optima_host_config.body
R doc/manual/pcsa.body
R doc/manual/pcsa_analys.body
R doc/manual/pcsa_mlines.body
R doc/manual/pcsa_rpscan.body
R doc/manual/predict1.body
R doc/manual/predict2.body
R doc/manual/pseudo3d_comb_rmv.body
R doc/manual/pseudo3d_combine.body
R doc/manual/register.body
R doc/manual/reporter.body
R doc/manual/rotor.body
R doc/manual/rotorstretch.body
R doc/manual/sassoc.body
R doc/manual/save_colormap.body
R doc/manual/second_moment.body
R doc/manual/select_edits.body
R doc/manual/select_runs.body
R doc/manual/simparams.body
R doc/manual/somo.body
A doc/manual/source/_static/css/custom.css
A doc/manual/source/_static/js/language_data.js
A doc/manual/source/_static/js/sphinx_highlight.js
A doc/manual/source/conf.py
A doc/manual/source/index.rst
A doc/manual/source/requirements.txt
R doc/manual/template.img.body
R doc/manual/tidy.conf
R doc/manual/time_derivative.body
R doc/manual/ultrascan3.txt
R doc/manual/us_buffer.body
R doc/manual/us_edit.body
R doc/manual/us_edit_mwl.body
R doc/manual/us_equiltime.body
R doc/manual/us_fds_filemanager.body
R doc/manual/us_investigator.body
R doc/manual/us_modelmetrics.body
R doc/manual/us_project.body
R doc/manual/us_solution.body
R doc/manual/uscol.body
R doc/manual/uscolor2.body
R doc/manual/usfont.body
R doc/manual/usfont2.body
R doc/manual/vhw_combine.body
R doc/manual/vhw_distrib_plot.body
R doc/manual/vhw_enhanced.body
R doc/manual/wrapped-images.lst
M gui/CMakeLists.txt
M gui/us_help.cpp
M makeall.sh
A pkg/macos/README.md
A pkg/macos/component.plist
A pkg/macos/distribution.xml.in
A pkg/macos/launcher/UltraScan3.app/Contents/Info.plist
A pkg/macos/launcher/UltraScan3.app/Contents/MacOS/UltraScan3
A pkg/macos/postinstall
A pkg/macos/preinstall
A pkg/macos/resources/Welcome.txt.in
A pkg/macos/resources/background.png
A pkg/macos/ultrascan_sysctl.plist
A pkg/macos/uninstall.sh
M programs/CMakeLists.txt
M programs/us/CMakeLists.txt
M programs/us/revision.sh
M programs/us/us.cpp
M programs/us_helpdaemon/us_helpdaemon.cpp
M programs/us_mpi_analysis/2dsa_worker.cpp
M programs/us_mpi_analysis/CMakeLists.txt
M programs/us_mpi_analysis/pcsa_worker.cpp
M programs/us_mpi_analysis/revision.sh
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M qwtplot3d/CMakeLists.txt
A scripts/bootstrap-linux.sh
A scripts/bootstrap-macos.sh
A scripts/bootstrap-windows.ps1
A scripts/bootstrap.bat
M scripts/build.bat
M scripts/build.ps1
M scripts/build.sh
A us-build
M utils/CMakeLists.txt
M utils/us_memory.cpp
M vcpkg.json
Log Message:
-----------
Merge branch 'main' into lukas/us_solution_analyte
Compare: https://github.com/ehb54/ultrascan3/compare/ad1ceab5b0c5...aba103e8cab9
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