[us-commits] [ehb54/ultrascan3] b13d58: Fix nightly build and cache reliability (#1008)

aaron-auc noreply at github.com
Tue Sep 1 20:17:42 MDT 2026 

  Branch: refs/heads/pr/etc-icons-hygiene
  Home:   https://github.com/ehb54/ultrascan3
  Commit: b13d5859412c5f33b8ecfd51634ad20a57eed426
      https://github.com/ehb54/ultrascan3/commit/b13d5859412c5f33b8ecfd51634ad20a57eed426
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-08-15 (Sat, 15 Aug 2026)

  Changed paths:
    M .github/workflows/build-macos-arm.yml
    M .github/workflows/build-macos-intel.yml
    M .github/workflows/build-oraclelinux.yml
    M .github/workflows/build-ubuntu.yml
    M .github/workflows/build-windows.yml
    M .github/workflows/nightly-build.yml
    M .github/workflows/release.yml
    M CMakeLists.txt
    M admin/cmake/packaging/linux/LinuxDeploy.cmake
    M admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
    M admin/cmake/packaging/windows/WinDeploy.cmake
    M admin/cmake/toolchain.cmake
    M scripts/bootstrap-linux.sh
    M scripts/build.ps1
    M scripts/build.sh
    A scripts/prepare-windows-ci.ps1
    A scripts/warm-cache-windows.ps1
    M scripts/warm-cache.sh

  Log Message:
  -----------
  Fix nightly build and cache reliability (#1008)


  Commit: 7bea45a42c4028832a52686f794b2ead58abca09
      https://github.com/ehb54/ultrascan3/commit/7bea45a42c4028832a52686f794b2ead58abca09
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-08-25 (Tue, 25 Aug 2026)

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    M programs/us_config/us_color.cpp
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    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_joined.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_joined_scroll.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_loadMALS.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_make_scaled.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_make_scaled_popup1.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_make_scaled_popup2.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_make_scaled_view_MALS_file.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_minimize_popup.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_options.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_options1.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_other_MALS_data_popup.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_plot_buttons.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_polynomials.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_q_exclude_buttons.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_remove_panel.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_scale1.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_scale2.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_scale3.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_scale4.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_scale5.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_scale6.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_scale7.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_scale8.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_scaled_MALS_generated_popup.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_scaled_SAXS_generated_popup.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_scroll_warning.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_second_set_buttons.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_second_set_buttons1.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_selections_buttons.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_top_buttons.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_viewselected.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_weighting_methods.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SD_eval_applied.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SD_eval_buttons.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SD_eval_comparisonD2.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SD_eval_define_1region.png
    A us_somo/somo/doc/manual/somo/somo-MALS_SD_eval_define_2regions.png
    A us_somo/somo/doc/manual/somo/somo-MALS_Select_Istarq_for_norm.png
    A us_somo/somo/doc/manual/somo/somo-MALS_Selected_Istarq_normalized.png
    A us_somo/somo/doc/manual/somo/somo-MALS_Selected_Istarq_normalized_ave.png
    A us_somo/somo/doc/manual/somo/somo-MALS_Selected_normalized_ave.png
    A us_somo/somo/doc/manual/somo/somo-MALS_Selected_orig_and_norm_files.png
    A us_somo/somo/doc/manual/somo/somo-MALS_UV_data_pop_up.png
    A us_somo/somo/doc/manual/somo/somo-MALS_adjust_times_pop_up.png
    A us_somo/somo/doc/manual/somo/somo-MALS_adjust_times_pop_up2.png
    A us_somo/somo/doc/manual/somo/somo-MALS_angles_pop_up.png
    A us_somo/somo/doc/manual/somo/somo-MALS_commands1.png
    A us_somo/somo/doc/manual/somo/somo-MALS_conc_chrom_Gauss_fit.png
    A us_somo/somo/doc/manual/somo/somo-MALS_conc_chrom_fit_module.png
    A us_somo/somo/doc/manual/somo/somo-MALS_conc_chrom_init_Gauss.png
    A us_somo/somo/doc/manual/somo/somo-MALS_conc_used_pop_up.png
    A us_somo/somo/doc/manual/somo/somo-MALS_conc_util_add_MALS_data.png
    A us_somo/somo/doc/manual/somo/somo-MALS_conc_util_buttons.png
    A us_somo/somo/doc/manual/somo/somo-MALS_conc_util_loaded_data.png
    A us_somo/somo/doc/manual/somo/somo-MALS_conc_util_pop_up.png
    A us_somo/somo/doc/manual/somo/somo-MALS_conc_util_pop_up2.png
    A us_somo/somo/doc/manual/somo/somo-MALS_conc_util_pop_up3.png
    A us_somo/somo/doc/manual/somo/somo-MALS_conc_util_repeak.png
    A us_somo/somo/doc/manual/somo/somo-MALS_conc_util_timeshift.png
    A us_somo/somo/doc/manual/somo/somo-MALS_conc_util_timeshift_set.png
    A us_somo/somo/doc/manual/somo/somo-MALS_crop_I_dash_chromatograms.png
    A us_somo/somo/doc/manual/somo/somo-MALS_cropping_buttons.png
    A us_somo/somo/doc/manual/somo/somo-MALS_inconsistent times_pop_up.png
    A us_somo/somo/doc/manual/somo/somo-MALS_incorrect processing_param_pop_up.png
    A us_somo/somo/doc/manual/somo/somo-MALS_info_panel.png
    A us_somo/somo/doc/manual/somo/somo-MALS_initial.png
    A us_somo/somo/doc/manual/somo/somo-MALS_main1.png
    A us_somo/somo/doc/manual/somo/somo-MALS_make_Istar_q_enterparam_popup.png
    A us_somo/somo/doc/manual/somo/somo-MALS_make_Istar_q_enterparam_popup1.png
    A us_somo/somo/doc/manual/somo/somo-MALS_make_Istar_q_noGauss_popup.png
    A us_somo/somo/doc/manual/somo/somo-MALS_no_Gaussians_pop_up.png
    A us_somo/somo/doc/manual/somo/somo-MALS_no_conc_pop_up.png
    A us_somo/somo/doc/manual/somo/somo-MALS_no_conc_pop_up2.png
    A us_somo/somo/doc/manual/somo/somo-MALS_options.png
    A us_somo/somo/doc/manual/somo/somo-MALS_options_conc_detector.png
    A us_somo/somo/doc/manual/somo/somo-MALS_options_new_Gaussians.png
    A us_somo/somo/doc/manual/somo/somo-MALS_options_new_misc.png
    A us_somo/somo/doc/manual/somo/somo-MALS_param.png
    A us_somo/somo/doc/manual/somo/somo-MALS_plot_buttons.png
    A us_somo/somo/doc/manual/somo/somo-MALS_processing_param_pop_up.png
    A us_somo/somo/doc/manual/somo/somo-MALS_processing_param_pop_up2.png
    A us_somo/somo/doc/manual/somo/somo-MALS_remove_panel.png
    A us_somo/somo/doc/manual/somo/somo-MALS_resulting_I_starq_NoGauss.png
    A us_somo/somo/doc/manual/somo/somo-MALS_scattering_angles.png
    A us_somo/somo/doc/manual/somo/somo-MALS_second_set_buttons.png
    A us_somo/somo/doc/manual/somo/somo-MALS_selected_Ihash_EMG_GMG.png
    A us_somo/somo/doc/manual/somo/somo-MALS_selections_buttons.png
    A us_somo/somo/doc/manual/somo/somo-MALS_set_conc_detector.png
    A us_somo/somo/doc/manual/somo/somo-MALS_seven_Gaussians1.png
    A us_somo/somo/doc/manual/somo/somo-MALS_seven_Gaussians2.png
    A us_somo/somo/doc/manual/somo/somo-MALS_seven_Gaussians_GlobFit_Final.png
    A us_somo/somo/doc/manual/somo/somo-MALS_seven_Gaussians_GlobFit_Init.png
    A us_somo/somo/doc/manual/somo/somo-MALS_seven_Gaussians_GlobFit_by_q.png
    A us_somo/somo/doc/manual/somo/somo-MALS_seven_Gaussians_GlobFit_saving_warning.png
    A us_somo/somo/doc/manual/somo/somo-MALS_seven_Gaussians_GlobGauss.png
    A us_somo/somo/doc/manual/somo/somo-MALS_seven_Gaussians_scroll1.png
    A us_somo/somo/doc/manual/somo/somo-MALS_seven_Gaussians_scroll2.png
    A us_somo/somo/doc/manual/somo/somo-MALS_six_Gaussians1.png
    A us_somo/somo/doc/manual/somo/somo-MALS_six_Gaussians2.png
    A us_somo/somo/doc/manual/somo/somo-MALS_timeshift_pop_up.png
    A us_somo/somo/doc/manual/somo/somo-MALS_timeshift_pop_up2.png
    A us_somo/somo/doc/manual/somo/somo-MALS_top_buttons.png
    A us_somo/somo/doc/manual/somo/somo-mals_Residuals_twocurves.png
    A us_somo/somo/doc/manual/somo/somo-perceive.png
    M us_somo/somo/doc/manual/somo/somo.html
    M us_somo/somo/doc/manual/somo/somo_hydro.html
    A us_somo/somo/doc/manual/somo/somo_hydro_shell_reduction.html
    M us_somo/somo/doc/manual/somo/somo_mals.html
    A us_somo/somo/doc/manual/somo/somo_mals_dctr.html
    A us_somo/somo/doc/manual/somo/somo_mals_options.html
    M us_somo/somo/doc/manual/somo/somo_mals_saxs.html
    M us_somo/somo/doc/manual/somo/somo_misc.html
    M us_somo/somo/doc/manual/somo/somo_pdb_parsing.html
    M us_somo/somo/doc/manual/somo/somo_pdb_parsing_expert_mode.html
    A us_somo/somo/doc/manual/somo/somo_perceive.html
    M us_somo/somo/doc/manual/somo/somo_save.html
    M us_somo/somo/doc/manual/somo/somo_saxs_hplc.html
    M us_somo/somo/doc/manual/somo/somo_saxs_hplc_skewedGauss.html
    M us_somo/somo/doc/manual/somo/somo_uv_vis.html
    A us_somo/somo/doc/manual/somo_mals.html
    M utils/us_defines.h

  Log Message:
  -----------
  Merge branch 'main' into issue-1008-nightly-build-cache-reliability


  Commit: 2d065f981bf41935a1d1844964e88e8fdd8d51ae
      https://github.com/ehb54/ultrascan3/commit/2d065f981bf41935a1d1844964e88e8fdd8d51ae
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-08-25 (Tue, 25 Aug 2026)

  Changed paths:
    A .github/actions/build-package/action.yml
    A .github/workflows/app-build.yml
    R .github/workflows/build-macos-arm.yml
    R .github/workflows/build-macos-intel.yml
    R .github/workflows/build-oraclelinux.yml
    R .github/workflows/build-ubuntu.yml
    R .github/workflows/build-windows.yml
    M .github/workflows/bump-version.yml
    M .github/workflows/nightly-build.yml
    M .github/workflows/on-demand-build.yml
    M .github/workflows/release.yml
    M .github/workflows/static-analysis.yml
    A .github/workflows/toolchain-build.yml
    M .github/workflows/unit-tests-v2.yml
    M .gitignore
    M CMakePresets.json
    M admin/cmake/README.md
    M admin/cmake/packaging/linux/LinuxDeploy.cmake
    M admin/cmake/packaging/windows/WinDeploy.cmake
    M admin/cmake/toolchain.cmake
    M admin/cmake/triplets/arm64-windows.cmake
    A admin/cmake/triplets/x64-windows.cmake
    A buildsys/docker/oraclelinux8.Dockerfile
    A buildsys/docker/ubuntu2404.Dockerfile
    A buildsys/toolchain.lock.json
    R buildsys/vcpkg/overlay-ports/qtbase/GLIB2-static.patch
    R buildsys/vcpkg/overlay-ports/qtbase/allow_outside_prefix.patch
    R buildsys/vcpkg/overlay-ports/qtbase/clang-cl_QGADGET_fix.diff
    R buildsys/vcpkg/overlay-ports/qtbase/clang-cl_source_location.patch
    R buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_install_copyright.cmake
    R buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_install_submodule.cmake
    R buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_port_details.cmake
    R buildsys/vcpkg/overlay-ports/qtbase/config_install.patch
    R buildsys/vcpkg/overlay-ports/qtbase/dont_force_cmakecache_latest.patch
    R buildsys/vcpkg/overlay-ports/qtbase/env.patch
    R buildsys/vcpkg/overlay-ports/qtbase/fix-host-aliasing.patch
    R buildsys/vcpkg/overlay-ports/qtbase/fix-libresolv-test.patch
    R buildsys/vcpkg/overlay-ports/qtbase/fix-link-lib-discovery.patch
    R buildsys/vcpkg/overlay-ports/qtbase/fix-missing-include.patch
    R buildsys/vcpkg/overlay-ports/qtbase/fix_cmake_build.patch
    R buildsys/vcpkg/overlay-ports/qtbase/fix_deploy_windows.patch
    R buildsys/vcpkg/overlay-ports/qtbase/fix_egl.patch
    R buildsys/vcpkg/overlay-ports/qtbase/fix_egl_2.patch
    R buildsys/vcpkg/overlay-ports/qtbase/framework.patch
    R buildsys/vcpkg/overlay-ports/qtbase/harfbuzz.patch
    R buildsys/vcpkg/overlay-ports/qtbase/installed_dir.patch
    R buildsys/vcpkg/overlay-ports/qtbase/macdeployqt-symlinks.patch
    R buildsys/vcpkg/overlay-ports/qtbase/moltenvk.patch
    R buildsys/vcpkg/overlay-ports/qtbase/port.data.cmake
    R buildsys/vcpkg/overlay-ports/qtbase/portfile.cmake
    R buildsys/vcpkg/overlay-ports/qtbase/qmake.debug.bat
    R buildsys/vcpkg/overlay-ports/qtbase/qt.conf.in
    R buildsys/vcpkg/overlay-ports/qtbase/qtpaths.debug.bat
    R buildsys/vcpkg/overlay-ports/qtbase/use-shared-mime-info.patch
    R buildsys/vcpkg/overlay-ports/qtbase/use_inotify_on_freebsd.patch
    R buildsys/vcpkg/overlay-ports/qtbase/vcpkg.json
    R buildsys/vcpkg/overlay-ports/qtbase/windeployqt.debug.bat
    R buildsys/vcpkg/overlay-ports/qtbase/xcodebuild-not-installed.patch
    M scripts/bootstrap-linux.sh
    M scripts/bootstrap-macos.sh
    A scripts/build-toolchain.ps1
    A scripts/build-toolchain.sh
    M scripts/build.ps1
    M scripts/build.sh
    A scripts/fetch-toolchain.ps1
    A scripts/fetch-toolchain.sh
    M scripts/prepare-windows-ci.ps1
    R scripts/warm-cache-windows.ps1
    R scripts/warm-cache.sh
    M vcpkg.json

  Log Message:
  -----------
  Replace per-platform dependency builds with a pinned prebuilt toolchain and a single application build workflow


  Commit: 6b19e1030dad552bc4771a99b0cc323bc0bee775
      https://github.com/ehb54/ultrascan3/commit/6b19e1030dad552bc4771a99b0cc323bc0bee775
  Author: aaron-auc <aaron at aucsolutions.com>
  Date:   2026-09-01 (Tue, 01 Sep 2026)

  Changed paths:
    A .github/actions/build-package/action.yml
    A .github/workflows/app-build.yml
    R .github/workflows/build-macos-arm.yml
    R .github/workflows/build-macos-intel.yml
    R .github/workflows/build-oraclelinux.yml
    R .github/workflows/build-ubuntu.yml
    R .github/workflows/build-windows.yml
    M .github/workflows/bump-version.yml
    M .github/workflows/nightly-build.yml
    M .github/workflows/on-demand-build.yml
    M .github/workflows/release.yml
    M .github/workflows/static-analysis.yml
    A .github/workflows/toolchain-build.yml
    M .github/workflows/unit-tests-v2.yml
    M .gitignore
    M CMakeLists.txt
    M CMakePresets.json
    M admin/cmake/README.md
    M admin/cmake/packaging/linux/LinuxDeploy.cmake
    M admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
    M admin/cmake/packaging/windows/WinDeploy.cmake
    M admin/cmake/toolchain.cmake
    M admin/cmake/triplets/arm64-windows.cmake
    A admin/cmake/triplets/x64-windows.cmake
    A buildsys/docker/oraclelinux8.Dockerfile
    A buildsys/docker/ubuntu2404.Dockerfile
    A buildsys/toolchain.lock.json
    R buildsys/vcpkg/overlay-ports/qtbase/GLIB2-static.patch
    R buildsys/vcpkg/overlay-ports/qtbase/allow_outside_prefix.patch
    R buildsys/vcpkg/overlay-ports/qtbase/clang-cl_QGADGET_fix.diff
    R buildsys/vcpkg/overlay-ports/qtbase/clang-cl_source_location.patch
    R buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_install_copyright.cmake
    R buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_install_submodule.cmake
    R buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_port_details.cmake
    R buildsys/vcpkg/overlay-ports/qtbase/config_install.patch
    R buildsys/vcpkg/overlay-ports/qtbase/dont_force_cmakecache_latest.patch
    R buildsys/vcpkg/overlay-ports/qtbase/env.patch
    R buildsys/vcpkg/overlay-ports/qtbase/fix-host-aliasing.patch
    R buildsys/vcpkg/overlay-ports/qtbase/fix-libresolv-test.patch
    R buildsys/vcpkg/overlay-ports/qtbase/fix-link-lib-discovery.patch
    R buildsys/vcpkg/overlay-ports/qtbase/fix-missing-include.patch
    R buildsys/vcpkg/overlay-ports/qtbase/fix_cmake_build.patch
    R buildsys/vcpkg/overlay-ports/qtbase/fix_deploy_windows.patch
    R buildsys/vcpkg/overlay-ports/qtbase/fix_egl.patch
    R buildsys/vcpkg/overlay-ports/qtbase/fix_egl_2.patch
    R buildsys/vcpkg/overlay-ports/qtbase/framework.patch
    R buildsys/vcpkg/overlay-ports/qtbase/harfbuzz.patch
    R buildsys/vcpkg/overlay-ports/qtbase/installed_dir.patch
    R buildsys/vcpkg/overlay-ports/qtbase/macdeployqt-symlinks.patch
    R buildsys/vcpkg/overlay-ports/qtbase/moltenvk.patch
    R buildsys/vcpkg/overlay-ports/qtbase/port.data.cmake
    R buildsys/vcpkg/overlay-ports/qtbase/portfile.cmake
    R buildsys/vcpkg/overlay-ports/qtbase/qmake.debug.bat
    R buildsys/vcpkg/overlay-ports/qtbase/qt.conf.in
    R buildsys/vcpkg/overlay-ports/qtbase/qtpaths.debug.bat
    R buildsys/vcpkg/overlay-ports/qtbase/use-shared-mime-info.patch
    R buildsys/vcpkg/overlay-ports/qtbase/use_inotify_on_freebsd.patch
    R buildsys/vcpkg/overlay-ports/qtbase/vcpkg.json
    R buildsys/vcpkg/overlay-ports/qtbase/windeployqt.debug.bat
    R buildsys/vcpkg/overlay-ports/qtbase/xcodebuild-not-installed.patch
    M scripts/bootstrap-linux.sh
    M scripts/bootstrap-macos.sh
    A scripts/build-toolchain.ps1
    A scripts/build-toolchain.sh
    M scripts/build.ps1
    M scripts/build.sh
    A scripts/fetch-toolchain.ps1
    A scripts/fetch-toolchain.sh
    A scripts/prepare-windows-ci.ps1
    R scripts/warm-cache.sh
    M vcpkg.json

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/issue-1008-nightly-build-cache-reliability' into pr/etc-icons-hygiene


Compare: https://github.com/ehb54/ultrascan3/compare/4911ba08e2b8...6b19e1030dad

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