[us-commits] [ehb54/ultrascan3] 8612c2: GMP-ABDE: 5. ANALYSIS -- work on reporting intagra...
alexsav815
noreply at github.com
Sun Sep 13 11:25:43 MDT 2026
Branch: refs/heads/main
Home: https://github.com/ehb54/ultrascan3
Commit: 8612c2b2fa2275b546f13b8bb20249a23baaf0a9
https://github.com/ehb54/ultrascan3/commit/8612c2b2fa2275b546f13b8bb20249a23baaf0a9
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-08-23 (Sun, 23 Aug 2026)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- work on reporting intagrations for dna and protein ...
Commit: 67044af3cc79fbc40c749c2d95efdc52d562b7b4
https://github.com/ehb54/ultrascan3/commit/67044af3cc79fbc40c749c2d95efdc52d562b7b4
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-08-23 (Sun, 23 Aug 2026)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[1]GMP-ABDE: 5. ANALYSIS -- work on reporting intagrations for dna and protein ...
Commit: b2df77484199df515ac9ac99c157beb7b4d56d4f
https://github.com/ehb54/ultrascan3/commit/b2df77484199df515ac9ac99c157beb7b4d56d4f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-08-23 (Sun, 23 Aug 2026)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[2]GMP-ABDE: 5. ANALYSIS -- work on reporting intagrations for dna and protein ...
Commit: 7b3cc779d8ace949d48de21cc0f36ddfd26a2ec7
https://github.com/ehb54/ultrascan3/commit/7b3cc779d8ace949d48de21cc0f36ddfd26a2ec7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-08-23 (Sun, 23 Aug 2026)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[2a]GMP-ABDE: 5. ANALYSIS -- work on reporting intagrations for dna and protein ...
Commit: f11a3beeefb5b785462a6a1eb40105c881613650
https://github.com/ehb54/ultrascan3/commit/f11a3beeefb5b785462a6a1eb40105c881613650
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-08-23 (Sun, 23 Aug 2026)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[2b]GMP-ABDE: 5. ANALYSIS -- work on reporting intagrations for dna and protein ...
Commit: c57a342a9ef97ab364142ffe4897d98e9fd448be
https://github.com/ehb54/ultrascan3/commit/c57a342a9ef97ab364142ffe4897d98e9fd448be
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-08-23 (Sun, 23 Aug 2026)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[3]GMP-ABDE: 5. ANALYSIS -- work on reporting intagrations for dna and protein ...
Commit: a968f102b69b924eba0b9888feb5a0acf49602d4
https://github.com/ehb54/ultrascan3/commit/a968f102b69b924eba0b9888feb5a0acf49602d4
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-08-24 (Mon, 24 Aug 2026)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
Log Message:
-----------
[4]GMP-ABDE: 5. ANALYSIS -- work on reporting intagrations for dna and protein ...
Commit: f3f1a9e1bdf7e917dd0f3eaa4265bdfc76c79da9
https://github.com/ehb54/ultrascan3/commit/f3f1a9e1bdf7e917dd0f3eaa4265bdfc76c79da9
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-08-24 (Mon, 24 Aug 2026)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
[5]GMP-ABDE: 5. ANALYSIS -- work on reporting intagrations for dna and protein ...
Commit: 90dadb26b0d343f7a3aaf1fea3dbf49b736db4c8
https://github.com/ehb54/ultrascan3/commit/90dadb26b0d343f7a3aaf1fea3dbf49b736db4c8
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-08-24 (Mon, 24 Aug 2026)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
Log Message:
-----------
[6]GMP-ABDE: 5. ANALYSIS -- work on reporting intagrations for dna and protein ...
Commit: 5ec0ca68cfbae77bb6c641659bd937228391aecd
https://github.com/ehb54/ultrascan3/commit/5ec0ca68cfbae77bb6c641659bd937228391aecd
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-08-24 (Mon, 24 Aug 2026)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
Log Message:
-----------
[7]GMP-ABDE: 5. ANALYSIS -- work on reporting intagrations for dna and protein ...ush
Commit: 3ba09c576be7f77c513fb90d2c33ab501aee127a
https://github.com/ehb54/ultrascan3/commit/3ba09c576be7f77c513fb90d2c33ab501aee127a
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-08-26 (Wed, 26 Aug 2026)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
Log Message:
-----------
[9]GMP-ABDE: 5. ANALYSIS -- work on reporting intagrations for dna and protein ...ushush
Commit: 9a70fce87d5dbe052400831090cd52f0f63b3b72
https://github.com/ehb54/ultrascan3/commit/9a70fce87d5dbe052400831090cd52f0f63b3b72
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-08-26 (Wed, 26 Aug 2026)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
Log Message:
-----------
[9a]GMP-ABDE: 5. ANALYSIS -- work on reporting intagrations for dna and protein ...ushush
Commit: 990e5835123d7e7e870a2f3ba71ab89b9a15be73
https://github.com/ehb54/ultrascan3/commit/990e5835123d7e7e870a2f3ba71ab89b9a15be73
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-02 (Wed, 02 Sep 2026)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- add backward compatibility for processing integrations with DB records whose JSON does not have sample tier...
Commit: 901db3d6bfdc71ff147a0c723bed2b59ada755be
https://github.com/ehb54/ultrascan3/commit/901db3d6bfdc71ff147a0c723bed2b59ada755be
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-02 (Wed, 02 Sep 2026)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
Log Message:
-----------
[and plot ranges correctly]GMP-ABDE: 5. ANALYSIS -- add backward compatibility for processing integrations with DB records whose JSON does not have sample tier...
Commit: 293a0f5b25defdcdec19735facce41e55b2d0145
https://github.com/ehb54/ultrascan3/commit/293a0f5b25defdcdec19735facce41e55b2d0145
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-02 (Wed, 02 Sep 2026)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
[use original analytes names in rpeort int. section && plot labels]GMP-ABDE: 5. ANALYSIS -- add backward compatibility for processing integrations with DB records whose JSON does not have sample tier...
Commit: aa575c815c808baf5368d6f7e17e5d83939ef082
https://github.com/ehb54/ultrascan3/commit/aa575c815c808baf5368d6f7e17e5d83939ef082
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-02 (Wed, 02 Sep 2026)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
Log Message:
-----------
[[1]use original analytes names in rpeort int. section && plot labels]GMP-ABDE: 5. ANALYSIS -- add backward compatibility for processing integrations with DB records whose JSON does not have sample tier...
Commit: 79c6e36317affce3fad61a34b6a832220bbaf152
https://github.com/ehb54/ultrascan3/commit/79c6e36317affce3fad61a34b6a832220bbaf152
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-08 (Tue, 08 Sep 2026)
Changed paths:
M gui/us_report_gui.cpp
M gui/us_report_gui.h
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M utils/us_report_gmp.cpp
M utils/us_report_gmp.h
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS && REPORT -- refactoring on using full analystes names labels in plots when running from withing ABDE-GMP & stand-alone Report programs...
Commit: 1bb470346f619e2e9e1da4cc0639f96991c3b9e7
https://github.com/ehb54/ultrascan3/commit/1bb470346f619e2e9e1da4cc0639f96991c3b9e7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-08 (Tue, 08 Sep 2026)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS && REPORT -- test for using Qgroupbox dialog for selecting signals for different analytes (per-channel) whose integration results to be reported...
Commit: 693c555a97ea5d3072e4a399d27e81dd2384a0e9
https://github.com/ehb54/ultrascan3/commit/693c555a97ea5d3072e4a399d27e81dd2384a0e9
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-08 (Tue, 08 Sep 2026)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
Log Message:
-----------
[Fix for the the old deprecated 3-int-button overload in QMessageBox]GMP-ABDE: 5. ANALYSIS && REPORT -- test for using Qgroupbox dialog for selecting signals for different analytes (per-channel) whose integration results to be reported...
Commit: d3ea8b42cb9de5b5dd6686e67eb4ffdf10626c9c
https://github.com/ehb54/ultrascan3/commit/d3ea8b42cb9de5b5dd6686e67eb4ffdf10626c9c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-09 (Wed, 09 Sep 2026)
Changed paths:
A .github/actions/build-package/action.yml
A .github/workflows/app-build.yml
R .github/workflows/build-macos-arm.yml
R .github/workflows/build-macos-intel.yml
R .github/workflows/build-oraclelinux.yml
R .github/workflows/build-ubuntu.yml
R .github/workflows/build-windows.yml
M .github/workflows/bump-version.yml
M .github/workflows/nightly-build.yml
M .github/workflows/on-demand-build.yml
M .github/workflows/release.yml
M .github/workflows/static-analysis.yml
A .github/workflows/toolchain-build.yml
A .github/workflows/unit-tests-qt5-v2.yml
A .github/workflows/unit-tests-qt6-v2.yml
R .github/workflows/unit-tests-v2.yml
M .gitignore
M CMakeLists.txt
M CMakePresets.json
M admin/cmake/README.md
M admin/cmake/packaging/linux/LinuxDeploy.cmake
M admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
M admin/cmake/packaging/macos/MacDeploy.cmake
M admin/cmake/packaging/macos/MacHpcDeploy.cmake
M admin/cmake/packaging/windows/WinDeploy.cmake
M admin/cmake/toolchain.cmake
M admin/cmake/triplets/arm64-windows.cmake
A admin/cmake/triplets/x64-windows.cmake
M admin/test/docker/Dockerfile
A buildsys/docker/oraclelinux8.Dockerfile
A buildsys/docker/ubuntu2404.Dockerfile
A buildsys/toolchain.lock.json
R buildsys/vcpkg/overlay-ports/qtbase/GLIB2-static.patch
R buildsys/vcpkg/overlay-ports/qtbase/allow_outside_prefix.patch
R buildsys/vcpkg/overlay-ports/qtbase/clang-cl_QGADGET_fix.diff
R buildsys/vcpkg/overlay-ports/qtbase/clang-cl_source_location.patch
R buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_install_copyright.cmake
R buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_install_submodule.cmake
R buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_port_details.cmake
R buildsys/vcpkg/overlay-ports/qtbase/config_install.patch
R buildsys/vcpkg/overlay-ports/qtbase/dont_force_cmakecache_latest.patch
R buildsys/vcpkg/overlay-ports/qtbase/env.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix-host-aliasing.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix-libresolv-test.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix-link-lib-discovery.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix-missing-include.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix_cmake_build.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix_deploy_windows.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix_egl.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix_egl_2.patch
R buildsys/vcpkg/overlay-ports/qtbase/framework.patch
R buildsys/vcpkg/overlay-ports/qtbase/harfbuzz.patch
R buildsys/vcpkg/overlay-ports/qtbase/installed_dir.patch
R buildsys/vcpkg/overlay-ports/qtbase/macdeployqt-symlinks.patch
R buildsys/vcpkg/overlay-ports/qtbase/moltenvk.patch
R buildsys/vcpkg/overlay-ports/qtbase/port.data.cmake
R buildsys/vcpkg/overlay-ports/qtbase/portfile.cmake
R buildsys/vcpkg/overlay-ports/qtbase/qmake.debug.bat
R buildsys/vcpkg/overlay-ports/qtbase/qt.conf.in
R buildsys/vcpkg/overlay-ports/qtbase/qtpaths.debug.bat
R buildsys/vcpkg/overlay-ports/qtbase/use-shared-mime-info.patch
R buildsys/vcpkg/overlay-ports/qtbase/use_inotify_on_freebsd.patch
R buildsys/vcpkg/overlay-ports/qtbase/vcpkg.json
R buildsys/vcpkg/overlay-ports/qtbase/windeployqt.debug.bat
R buildsys/vcpkg/overlay-ports/qtbase/xcodebuild-not-installed.patch
A doc/develop/gimp/README.md
A doc/develop/gimp/ultrascan_gimpv3.scm
M doc/manual/source/conf.py
M doc/manual/source/start_page-new.rst
M etc/etc_belongs_list.txt
M gui/us_gui_settings.cpp
M gui/us_theme.cpp
M pkg/macos/README.md
M pkg/macos/preinstall
M programs/CMakeLists.txt
M scripts/bootstrap-linux.sh
M scripts/bootstrap-macos.sh
A scripts/build-toolchain.ps1
A scripts/build-toolchain.sh
M scripts/build.ps1
M scripts/build.sh
A scripts/fetch-toolchain.ps1
A scripts/fetch-toolchain.sh
A scripts/prepare-windows-ci.ps1
R scripts/warm-cache.sh
M test-docker.sh
M test/CMakeLists.txt
M test/README
A test/common/us3_gui_test_main.h
A test/gui/CMakeLists.txt
A test/gui/test_us_editor_gui.cpp
A test/gui/test_us_gui_test_isolation.cpp
M test/utils/CMakeLists.txt
A test/utils/test_us_build_variant.cpp
M test/utils/test_us_memory.cpp
M test/utils/test_us_model.cpp
A test/utils/test_us_test_environment.cpp
M test/utils/test_us_utils_main.cpp
M utils/us_memory.cpp
M utils/us_settings.cpp
M utils/us_settings.h
M vcpkg.json
Log Message:
-----------
Merge branch 'main' into alexey-dev-issue1027
Commit: 7fee4e121dc8a20017b531b1aeddc15a1efd1325
https://github.com/ehb54/ultrascan3/commit/7fee4e121dc8a20017b531b1aeddc15a1efd1325
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-11 (Fri, 11 Sep 2026)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
Log Message:
-----------
Merge branch 'main' into alexey-dev-issue1027
Commit: 0dacca20a3a41ce52414b0adece6607341d210d2
https://github.com/ehb54/ultrascan3/commit/0dacca20a3a41ce52414b0adece6607341d210d2
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-11 (Fri, 11 Sep 2026)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
Log Message:
-----------
Q_FOREACH changed to for loop while going over JSON...
Commit: 8d45c38201ca798b9707b2a6d860529e61d7f723
https://github.com/ehb54/ultrascan3/commit/8d45c38201ca798b9707b2a6d860529e61d7f723
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-11 (Fri, 11 Sep 2026)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
Log Message:
-----------
Merge branch 'alexey-dev-issue1027' of github.com:ehb54/ultrascan3 into alexey-dev-issue1027
Commit: f1c3182e7b33b370e847327a480c92c905ded4d7
https://github.com/ehb54/ultrascan3/commit/f1c3182e7b33b370e847327a480c92c905ded4d7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-13 (Sun, 13 Sep 2026)
Changed paths:
M gui/us_report_gui.cpp
M gui/us_report_gui.h
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M utils/us_report_gmp.cpp
M utils/us_report_gmp.h
Log Message:
-----------
Merge pull request #534 from ehb54/alexey-dev-issue1027
GMP-ABDE: add integration info for both DNA and protein signals in the report
Compare: https://github.com/ehb54/ultrascan3/compare/1a328fca6943...f1c3182e7b33
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