[us-commits] [ehb54/ultrascan3] 35bdd1: Rename autorg to guinier_search; Guinier options c...

[emre brookes]

  Branch: refs/heads/ehb54-issue-1063
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 35bdd14542b8c63d79b11fd0b72b63ce1d9a2853
      https://github.com/ehb54/ultrascan3/commit/35bdd14542b8c63d79b11fd0b72b63ce1d9a2853
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2026-09-15 (Tue, 15 Sep 2026)

  Changed paths:
    M us_somo/develop/include/us_hydrodyn_sas_options_guinier.h
    M us_somo/develop/include/us_hydrodyn_saxs.h
    M us_somo/develop/include/us_saxs_util.h
    R us_somo/develop/include/us_saxs_util_autorg.h
    A us_somo/develop/include/us_saxs_util_guinier_search.h
    M us_somo/develop/libus_somo.pro
    M us_somo/develop/src/us_hydrodyn_sas_options_guinier.cpp
    R us_somo/develop/src/us_hydrodyn_saxs_autorg.cpp
    M us_somo/develop/src/us_hydrodyn_saxs_guinier.cpp
    A us_somo/develop/src/us_hydrodyn_saxs_guinier_search.cpp
    M us_somo/develop/src/us_hydrodyn_script.cpp
    M us_somo/develop/src/us_hydrodyn_settings.cpp
    R us_somo/develop/src/us_saxs_util_autorg.cpp
    A us_somo/develop/src/us_saxs_util_guinier_search.cpp
    M us_somo/develop/src/us_saxs_util_pm.cpp
    R us_somo/develop/test/autorg/README.md
    R us_somo/develop/test/autorg/compare.pl
    R us_somo/develop/test/autorg/gen_synthetic.pl
    A us_somo/develop/test/guinier_search/README.md
    A us_somo/develop/test/guinier_search/compare.pl
    A us_somo/develop/test/guinier_search/gen_synthetic.pl
    M us_somo/develop/us_saxs_cmds_mpi/us_saxs_cmds_mpi.pro
    M us_somo/develop/us_saxs_cmds_mpi_cuda/us_saxs_cmds_mpi_cuda.pro
    M us_somo/develop/us_saxs_cmds_t/main.cpp
    M us_somo/develop/us_saxs_cmds_t/us_saxs_cmds_t.pro
    R us_somo/somo/doc/manual/somo/somo_autorg.html
    A us_somo/somo/doc/manual/somo/somo_guinier_search.html
    M us_somo/somo/doc/manual/somo/somo_saxs_options.html

  Log Message:
  -----------
  Rename autorg to guinier_search; Guinier options checkbox for the robust search; sas guinier

"autorg" is ATSAS's name; the US-SOMO routine is now guinier_search everywhere:
us_saxs_cmds_t guinier_search, the guinier_search json run type, gui_script
"sas guinier_search", US_Guinier_Search_Params / _Result, the source files,
the manual page somo_guinier_search.html and the test directory. ATSAS's
autorg keeps its name where it is compared against.

Guinier options window: new checkbox "Robust automatic Guinier range search"
(gparams guinier_robust_search, default off, mutually exclusive with "Search
for best Guinier range", the q*R limit mode and outlier rejection) routes
Process Guinier, Process CS Guinier and Process TV Guinier through the new
search with the q limits, point limits, q*R limit and SD weighting of that
window; the quality, window count and low-q diagnostics go to the message
area and the csv header records "Robust automatic range fitting used".

gui_script "sas guinier [rg|cs|tv]" presses those buttons; under gui_script
the Guinier reports are also echoed to stdout.

Refs ehb54/ultrascan-tickets#1063

Co-Authored-By: Claude Fable 5.1 <noreply at anthropic.com>



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