[us-commits] [ehb54/ultrascan3] 02cb04: Harden AUC and project disk I/O validation (#538)

[Lukas Dobler]

  Branch: refs/heads/lukas/us_femath-mc-single-loading
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 02cb04fe26cba051e50077098bd1dd302b69b08e
      https://github.com/ehb54/ultrascan3/commit/02cb04fe26cba051e50077098bd1dd302b69b08e
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2026-09-21 (Mon, 21 Sep 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_run_details2.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_remove_ri.cpp
    A programs/us_xpn_viewer/us_xpn_export.h
    M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
    A test/common/us3_file_test_base.h
    M test/utils/test_us_buffer.cpp
    A test/utils/test_us_dataIO_mutations.cpp
    A test/utils/test_us_dataIO_read_contract.cpp
    A test/utils/test_us_dataIO_roundtrip.cpp
    A test/utils/test_us_dataIO_versions.cpp
    M test/utils/test_us_project.cpp
    M test/utils/test_us_settings.cpp
    A test/utils/test_us_xpn_export.cpp
    M utils/us_astfem_math.cpp
    M utils/us_cfa_data.cpp
    M utils/us_cfa_data.h
    M utils/us_dataIO.cpp
    M utils/us_dataIO.h
    M utils/us_lamm_astfvm.cpp
    M utils/us_project.cpp
    M utils/us_settings.cpp
    M utils/us_settings.h
    M utils/us_simparms.cpp
    M utils/us_time_state.cpp
    M utils/us_xpn_data.cpp
    M utils/us_xpn_data.h

  Log Message:
  -----------
  Harden AUC and project disk I/O validation (#538)

* Record the current readRawData contract in a characterization suite

* Cover the auc write and read round trip with tolerances derived from the format

* Add named early-rejection mutation recipes for the auc reader

* Harden the auc reader against short reads and hostile counts and make a rejected read leave the caller's data untouched

* Drive US_Project disk round-trips through production code instead of parsing XML in the test body

* Give each file-writing test its own UltraScan work root so results no longer depend on execution order

* Grow the simulation interpolation bitmap with its readings and stop the writer reading past a short one

* Reject datasets that cannot describe a radius axis and always terminate the stored description

* Leave the caller's project untouched when a malformed file fails to parse

* Reject .auc format versions older than 4, which have never been loadable

* Validate the SetSpeedResolution setting and honor its documented spelling in the timestate

* Reject a radius axis the .auc format cannot describe

* Report .auc write failures instead of discarding them

* Grow the species fit interpolation bitmap with its readings

* Fix AUC save failures and address review feedback

* Remove stale buffer test comment

* Shorten remaining AUC test comments

* Refactor speed resolution handling in US_Settings and related components


  Commit: e85b977919ce2fcc06a0f44f593b951ca854a4a2
      https://github.com/ehb54/ultrascan3/commit/e85b977919ce2fcc06a0f44f593b951ca854a4a2
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2026-09-24 (Thu, 24 Sep 2026)

  Changed paths:
    M gui/us_convert_gui.cpp
    M gui/us_run_details2.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
    M programs/us_pseudo_absorbance/us_convert_scan.cpp
    M programs/us_pseudo_absorbance/us_remove_ri.cpp
    A programs/us_xpn_viewer/us_xpn_export.h
    M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
    A test/common/us3_file_test_base.h
    M test/utils/test_us_buffer.cpp
    A test/utils/test_us_dataIO_mutations.cpp
    A test/utils/test_us_dataIO_read_contract.cpp
    A test/utils/test_us_dataIO_roundtrip.cpp
    A test/utils/test_us_dataIO_versions.cpp
    M test/utils/test_us_project.cpp
    M test/utils/test_us_settings.cpp
    A test/utils/test_us_xpn_export.cpp
    M utils/us_astfem_math.cpp
    M utils/us_cfa_data.cpp
    M utils/us_cfa_data.h
    M utils/us_dataIO.cpp
    M utils/us_dataIO.h
    M utils/us_lamm_astfvm.cpp
    M utils/us_project.cpp
    M utils/us_settings.cpp
    M utils/us_settings.h
    M utils/us_simparms.cpp
    M utils/us_time_state.cpp
    M utils/us_xpn_data.cpp
    M utils/us_xpn_data.h

  Log Message:
  -----------
  Merge branch 'main' into lukas/us_femath-mc-single-loading


Compare: https://github.com/ehb54/ultrascan3/compare/696fd4e60970...e85b977919ce

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