[us-commits] [ehb54/ultrascan3] 5913a0: Add GIMP 3 UltraScan logo generator
aaron-auc
noreply at github.com
Fri Sep 25 17:00:23 MDT 2026
Branch: refs/heads/fix/mpi-drain-ready-before-shutdown
Home: https://github.com/ehb54/ultrascan3
Commit: 5913a0a4a968d89c2fc6d6a8cb94d093ae0e08d8
https://github.com/ehb54/ultrascan3/commit/5913a0a4a968d89c2fc6d6a8cb94d093ae0e08d8
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-08-13 (Thu, 13 Aug 2026)
Changed paths:
A doc/develop/gimp/README.md
A doc/develop/gimp/ultrascan_gimpv3.scm
Log Message:
-----------
Add GIMP 3 UltraScan logo generator
Refs ehb54/ultrascan-tickets#1007
Commit: 0f92064f2d57a4d94725d66691ccad6136ff338f
https://github.com/ehb54/ultrascan3/commit/0f92064f2d57a4d94725d66691ccad6136ff338f
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-08-15 (Sat, 15 Aug 2026)
Changed paths:
M admin/cmake/packaging/macos/MacDeploy.cmake
M admin/cmake/packaging/macos/MacHpcDeploy.cmake
M doc/manual/source/start_page-new.rst
M pkg/macos/README.md
M pkg/macos/preinstall
M programs/CMakeLists.txt
Log Message:
-----------
Keep macOS installer changes isolated
Commit: 9aa0949130b92f547f2c57fa30ad88440de41896
https://github.com/ehb54/ultrascan3/commit/9aa0949130b92f547f2c57fa30ad88440de41896
Author: emre brookes <ehb54 at users.noreply.github.com>
Date: 2026-08-19 (Wed, 19 Aug 2026)
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Merge branch 'main' into 875-request-cmake-remove-gmp-module-from-installer-for-osx
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https://github.com/ehb54/ultrascan3/commit/6d9a1a1e6df5f257919824974de23c3f26ab0a6f
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Date: 2026-08-19 (Wed, 19 Aug 2026)
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Log Message:
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https://github.com/ehb54/ultrascan3/commit/619ea38f136aec298a9ae6eb788febf322579889
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GMP-ABDE: 5. ANALYSIS -- work on reporting intagrations for dna and protein ...
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[1]GMP-ABDE: 5. ANALYSIS -- work on reporting intagrations for dna and protein ...
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[2]GMP-ABDE: 5. ANALYSIS -- work on reporting intagrations for dna and protein ...
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https://github.com/ehb54/ultrascan3/commit/7b3cc779d8ace949d48de21cc0f36ddfd26a2ec7
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[2a]GMP-ABDE: 5. ANALYSIS -- work on reporting intagrations for dna and protein ...
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[2b]GMP-ABDE: 5. ANALYSIS -- work on reporting intagrations for dna and protein ...
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https://github.com/ehb54/ultrascan3/commit/c57a342a9ef97ab364142ffe4897d98e9fd448be
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M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_proto_ranges.cpp
M programs/us_export_legacy/us_export.cpp
M programs/us_fds_filemanager/us_fds_filemanager.cpp
M programs/us_fematch/us_adv_dmgamc.cpp
M programs/us_fematch/us_advanced_fem.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_fematch/us_plot_control_fem.cpp
M programs/us_fematch/us_resplot_fem.cpp
M programs/us_fematch/us_thread_worker.cpp
M programs/us_fit_meniscus/us_fit_meniscus.cpp
M programs/us_ga_init/us_ga_init.cpp
M programs/us_globalequil/us_eqfit_control.cpp
M programs/us_globalequil/us_eqmodel_control.cpp
M programs/us_globalequil/us_globalequil.cpp
M programs/us_globalequil/us_long_messagebox.cpp
M programs/us_globalequil/us_model_adpars.cpp
M programs/us_globalequil/us_model_select.cpp
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_helpdaemon/us_helpdaemon.cpp
M programs/us_integral/us_delete_models.cpp
M programs/us_integral/us_integral.cpp
M programs/us_manage_data/us_data_tree.cpp
M programs/us_manage_data/us_manage_data.cpp
M programs/us_modelmetrics/us_modelmetrics.cpp
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
M programs/us_mwl_spectra/us_mwl_spectra.cpp
M programs/us_mwl_spectra/us_mwls_pltctl.cpp
M programs/us_mwlr_viewer/us_mwl_pltctrl.cpp
M programs/us_mwlr_viewer/us_mwl_run.cpp
M programs/us_mwlr_viewer/us_mwlr_viewer.cpp
M programs/us_pcsa/us_adv_analysis_pc.cpp
M programs/us_pcsa/us_adv_analysis_pc.h
M programs/us_pcsa/us_analysis_control_pc.cpp
M programs/us_pcsa/us_mlplot.cpp
M programs/us_pcsa/us_mrecs_loader.cpp
M programs/us_pcsa/us_pcsa_process.cpp
M programs/us_pcsa/us_plot_control_pc.cpp
M programs/us_pcsa/us_resplot_pc.cpp
M programs/us_pcsa/us_rpscan.cpp
M programs/us_predict2/us_predict2.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
M programs/us_pseudo3d_combine/us_remove_distros.cpp
M programs/us_pseudo_absorbance/us_add_refScan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_pseudo_absorbance.cpp
M programs/us_pseudo_absorbance/us_remove_ri.cpp
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_ramp/us_experiment_gui_ra.cpp
M programs/us_ramp/us_get_dbrun_ra.cpp
M programs/us_ramp/us_intensity_ra.cpp
M programs/us_ramp/us_ramp_gui.cpp
M programs/us_ramp/us_select_triples_ra.cpp
M programs/us_reporter/us_reporter.cpp
M programs/us_reporter/us_sync_db.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_rotor_calibration/us_get_dbexp.cpp
M programs/us_rotor_calibration/us_rotor_calibration.cpp
M programs/us_second_moment/us_second_moment.cpp
M programs/us_tmst_viewer/us_tmst_viewer.cpp
M programs/us_vhw_combine/us_select_runid.cpp
M programs/us_vhw_combine/us_vhw_combine.cpp
M programs/us_vhw_combine/us_vhwc_pltctl.cpp
M programs/us_vhw_enhanced/us_distrib_plot.cpp
M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
M programs/us_xpn_viewer/us_xpn_run_auc.cpp
M programs/us_xpn_viewer/us_xpn_run_raw.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.h
M us_somo/add_to_bin/GRPY_linux64
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M us_somo/develop/include/us_hydrodyn_misc.h
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M us_somo/develop/include/us_saxs_util.h
M us_somo/develop/include/us_vector.h
M us_somo/develop/libus_somo.pro
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A us_somo/develop/perceiver/DECISIONS.md
A us_somo/develop/perceiver/GUI_TESTING.md
A us_somo/develop/perceiver/Makefile
A us_somo/develop/perceiver/README.md
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A us_somo/develop/perceiver/data/psv/candidates.fasta
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A us_somo/develop/perceiver/data/ref/cctbx_LICENSE.txt
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A us_somo/develop/perceiver/data/ref/it1992.cpp
A us_somo/develop/perceiver/data/ref/somo.saxs_atoms.generated
A us_somo/develop/perceiver/examples/perceive.somo
A us_somo/develop/perceiver/pdb_lite.h
A us_somo/develop/perceiver/residue_oracle.h
A us_somo/develop/perceiver/run_dialog_test.sh
A us_somo/develop/perceiver/tests/builder.cpp
A us_somo/develop/perceiver/tests/coverage.cpp
A us_somo/develop/perceiver/tests/dialog_qt.cpp
A us_somo/develop/perceiver/tests/emit_residue.cpp
A us_somo/develop/perceiver/tests/grid_volume.cpp
A us_somo/develop/perceiver/tests/hydration.cpp
A us_somo/develop/perceiver/tests/protein_psv.cpp
A us_somo/develop/perceiver/tests/psv.cpp
A us_somo/develop/perceiver/tests/regression.cpp
A us_somo/develop/perceiver/tests/sssr.cpp
A us_somo/develop/perceiver/tests/sssr_real.cpp
A us_somo/develop/perceiver/tests/tests_unit.cpp
A us_somo/develop/perceiver/tinytest.h
A us_somo/develop/perceiver/tools/calibrate_3v_context.py
A us_somo/develop/perceiver/tools/gen_saxs_entries.py
A us_somo/develop/perceiver/tools/hydration_table.py
A us_somo/develop/perceiver/tools/make_noncoded_variant.py
A us_somo/develop/perceiver/tools/psv_durchschlag.py
A us_somo/develop/perceiver/tools/psv_model.py
A us_somo/develop/perceiver/tools/recalc_ligand_volumes.py
R us_somo/develop/src/us_container_grpy.cpp
M us_somo/develop/src/us_hydrodyn.cpp
M us_somo/develop/src/us_hydrodyn_beads.cpp
M us_somo/develop/src/us_hydrodyn_core.cpp
M us_somo/develop/src/us_hydrodyn_dad.cpp
M us_somo/develop/src/us_hydrodyn_dad_conc.cpp
M us_somo/develop/src/us_hydrodyn_dad_conc_load.cpp
M us_somo/develop/src/us_hydrodyn_dad_fit.cpp
M us_somo/develop/src/us_hydrodyn_dad_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes.cpp
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A us_somo/develop/src/us_hydrodyn_dad_script.cpp
M us_somo/develop/src/us_hydrodyn_dad_util.cpp
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A us_somo/develop/src/us_hydrodyn_grid_volume.cpp
M us_somo/develop/src/us_hydrodyn_grpy.cpp
A us_somo/develop/src/us_hydrodyn_hydration.cpp
M us_somo/develop/src/us_hydrodyn_hydro.cpp
M us_somo/develop/src/us_hydrodyn_load.cpp
M us_somo/develop/src/us_hydrodyn_mals.cpp
M us_somo/develop/src/us_hydrodyn_mals_conc.cpp
M us_somo/develop/src/us_hydrodyn_mals_conc_load.cpp
M us_somo/develop/src/us_hydrodyn_mals_fit.cpp
M us_somo/develop/src/us_hydrodyn_mals_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_mals_modes.cpp
M us_somo/develop/src/us_hydrodyn_mals_options.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_conc.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_conc_load.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_fit.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_options.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_util.cpp
M us_somo/develop/src/us_hydrodyn_mals_util.cpp
M us_somo/develop/src/us_hydrodyn_misc.cpp
M us_somo/develop/src/us_hydrodyn_other.cpp
M us_somo/develop/src/us_hydrodyn_pdb_parsing.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool.cpp
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A us_somo/develop/src/us_hydrodyn_perceive_dialog.cpp
A us_somo/develop/src/us_hydrodyn_perceive_somo.cpp
A us_somo/develop/src/us_hydrodyn_psv.cpp
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M us_somo/develop/src/us_hydrodyn_save.cpp
M us_somo/develop/src/us_hydrodyn_saxs.cpp
M us_somo/develop/src/us_hydrodyn_saxs_1d.cpp
M us_somo/develop/src/us_hydrodyn_saxs_2d.cpp
M us_somo/develop/src/us_hydrodyn_saxs_buffer.cpp
M us_somo/develop/src/us_hydrodyn_saxs_buffer_conc.cpp
M us_somo/develop/src/us_hydrodyn_saxs_buffer_conc_load.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_bl.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_ciq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_conc.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_conc_load.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_gui.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_options.cpp
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M us_somo/develop/src/us_hydrodyn_settings.cpp
M us_somo/develop/src/us_hydrodyn_write.cpp
M us_somo/develop/src/us_saxs_util_best.cpp
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M us_somo/develop/src/us_saxs_util_hydro.cpp
M us_somo/develop/src/us_saxs_util_loads.cpp
M us_somo/develop/src/us_saxs_util_static.cpp
M us_somo/develop/src/us_vector.cpp
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A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_commontimes_all_dots.png
A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_cropping_buttons.png
A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_cropvis_results.png
A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_cropvis_results1.png
A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_cropvis_select.png
A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_exclude_q_vis_demo1.png
A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_exclude_q_vis_demo2.png
A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_fitting_methods.png
A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_generating_joined_excl_q_popup.png
A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_initial.png
A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_joined.png
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A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_loadMALS.png
A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_make_scaled.png
A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_make_scaled_popup1.png
A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_make_scaled_popup2.png
A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_make_scaled_view_MALS_file.png
A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_minimize_popup.png
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A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_options1.png
A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_other_MALS_data_popup.png
A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_plot_buttons.png
A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_polynomials.png
A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_q_exclude_buttons.png
A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_remove_panel.png
A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_scale1.png
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A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_scaled_MALS_generated_popup.png
A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_scaled_SAXS_generated_popup.png
A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_scroll_warning.png
A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_second_set_buttons.png
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A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_selections_buttons.png
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A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_viewselected.png
A us_somo/somo/doc/manual/somo/somo-MALS_SAXS_weighting_methods.png
A us_somo/somo/doc/manual/somo/somo-MALS_SD_eval_applied.png
A us_somo/somo/doc/manual/somo/somo-MALS_SD_eval_buttons.png
A us_somo/somo/doc/manual/somo/somo-MALS_SD_eval_comparisonD2.png
A us_somo/somo/doc/manual/somo/somo-MALS_SD_eval_define_1region.png
A us_somo/somo/doc/manual/somo/somo-MALS_SD_eval_define_2regions.png
A us_somo/somo/doc/manual/somo/somo-MALS_Select_Istarq_for_norm.png
A us_somo/somo/doc/manual/somo/somo-MALS_Selected_Istarq_normalized.png
A us_somo/somo/doc/manual/somo/somo-MALS_Selected_Istarq_normalized_ave.png
A us_somo/somo/doc/manual/somo/somo-MALS_Selected_normalized_ave.png
A us_somo/somo/doc/manual/somo/somo-MALS_Selected_orig_and_norm_files.png
A us_somo/somo/doc/manual/somo/somo-MALS_UV_data_pop_up.png
A us_somo/somo/doc/manual/somo/somo-MALS_adjust_times_pop_up.png
A us_somo/somo/doc/manual/somo/somo-MALS_adjust_times_pop_up2.png
A us_somo/somo/doc/manual/somo/somo-MALS_angles_pop_up.png
A us_somo/somo/doc/manual/somo/somo-MALS_commands1.png
A us_somo/somo/doc/manual/somo/somo-MALS_conc_chrom_Gauss_fit.png
A us_somo/somo/doc/manual/somo/somo-MALS_conc_chrom_fit_module.png
A us_somo/somo/doc/manual/somo/somo-MALS_conc_chrom_init_Gauss.png
A us_somo/somo/doc/manual/somo/somo-MALS_conc_used_pop_up.png
A us_somo/somo/doc/manual/somo/somo-MALS_conc_util_add_MALS_data.png
A us_somo/somo/doc/manual/somo/somo-MALS_conc_util_buttons.png
A us_somo/somo/doc/manual/somo/somo-MALS_conc_util_loaded_data.png
A us_somo/somo/doc/manual/somo/somo-MALS_conc_util_pop_up.png
A us_somo/somo/doc/manual/somo/somo-MALS_conc_util_pop_up2.png
A us_somo/somo/doc/manual/somo/somo-MALS_conc_util_pop_up3.png
A us_somo/somo/doc/manual/somo/somo-MALS_conc_util_repeak.png
A us_somo/somo/doc/manual/somo/somo-MALS_conc_util_timeshift.png
A us_somo/somo/doc/manual/somo/somo-MALS_conc_util_timeshift_set.png
A us_somo/somo/doc/manual/somo/somo-MALS_crop_I_dash_chromatograms.png
A us_somo/somo/doc/manual/somo/somo-MALS_cropping_buttons.png
A us_somo/somo/doc/manual/somo/somo-MALS_inconsistent times_pop_up.png
A us_somo/somo/doc/manual/somo/somo-MALS_incorrect processing_param_pop_up.png
A us_somo/somo/doc/manual/somo/somo-MALS_info_panel.png
A us_somo/somo/doc/manual/somo/somo-MALS_initial.png
A us_somo/somo/doc/manual/somo/somo-MALS_main1.png
A us_somo/somo/doc/manual/somo/somo-MALS_make_Istar_q_enterparam_popup.png
A us_somo/somo/doc/manual/somo/somo-MALS_make_Istar_q_enterparam_popup1.png
A us_somo/somo/doc/manual/somo/somo-MALS_make_Istar_q_noGauss_popup.png
A us_somo/somo/doc/manual/somo/somo-MALS_no_Gaussians_pop_up.png
A us_somo/somo/doc/manual/somo/somo-MALS_no_conc_pop_up.png
A us_somo/somo/doc/manual/somo/somo-MALS_no_conc_pop_up2.png
A us_somo/somo/doc/manual/somo/somo-MALS_options.png
A us_somo/somo/doc/manual/somo/somo-MALS_options_conc_detector.png
A us_somo/somo/doc/manual/somo/somo-MALS_options_new_Gaussians.png
A us_somo/somo/doc/manual/somo/somo-MALS_options_new_misc.png
A us_somo/somo/doc/manual/somo/somo-MALS_param.png
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A us_somo/somo/doc/manual/somo/somo-MALS_processing_param_pop_up.png
A us_somo/somo/doc/manual/somo/somo-MALS_processing_param_pop_up2.png
A us_somo/somo/doc/manual/somo/somo-MALS_remove_panel.png
A us_somo/somo/doc/manual/somo/somo-MALS_resulting_I_starq_NoGauss.png
A us_somo/somo/doc/manual/somo/somo-MALS_scattering_angles.png
A us_somo/somo/doc/manual/somo/somo-MALS_second_set_buttons.png
A us_somo/somo/doc/manual/somo/somo-MALS_selected_Ihash_EMG_GMG.png
A us_somo/somo/doc/manual/somo/somo-MALS_selections_buttons.png
A us_somo/somo/doc/manual/somo/somo-MALS_set_conc_detector.png
A us_somo/somo/doc/manual/somo/somo-MALS_seven_Gaussians1.png
A us_somo/somo/doc/manual/somo/somo-MALS_seven_Gaussians2.png
A us_somo/somo/doc/manual/somo/somo-MALS_seven_Gaussians_GlobFit_Final.png
A us_somo/somo/doc/manual/somo/somo-MALS_seven_Gaussians_GlobFit_Init.png
A us_somo/somo/doc/manual/somo/somo-MALS_seven_Gaussians_GlobFit_by_q.png
A us_somo/somo/doc/manual/somo/somo-MALS_seven_Gaussians_GlobFit_saving_warning.png
A us_somo/somo/doc/manual/somo/somo-MALS_seven_Gaussians_GlobGauss.png
A us_somo/somo/doc/manual/somo/somo-MALS_seven_Gaussians_scroll1.png
A us_somo/somo/doc/manual/somo/somo-MALS_seven_Gaussians_scroll2.png
A us_somo/somo/doc/manual/somo/somo-MALS_six_Gaussians1.png
A us_somo/somo/doc/manual/somo/somo-MALS_six_Gaussians2.png
A us_somo/somo/doc/manual/somo/somo-MALS_timeshift_pop_up.png
A us_somo/somo/doc/manual/somo/somo-MALS_timeshift_pop_up2.png
A us_somo/somo/doc/manual/somo/somo-MALS_top_buttons.png
A us_somo/somo/doc/manual/somo/somo-mals_Residuals_twocurves.png
A us_somo/somo/doc/manual/somo/somo-perceive.png
M us_somo/somo/doc/manual/somo/somo.html
M us_somo/somo/doc/manual/somo/somo_hydro.html
A us_somo/somo/doc/manual/somo/somo_hydro_shell_reduction.html
M us_somo/somo/doc/manual/somo/somo_mals.html
A us_somo/somo/doc/manual/somo/somo_mals_dctr.html
A us_somo/somo/doc/manual/somo/somo_mals_options.html
M us_somo/somo/doc/manual/somo/somo_mals_saxs.html
M us_somo/somo/doc/manual/somo/somo_misc.html
M us_somo/somo/doc/manual/somo/somo_pdb_parsing.html
M us_somo/somo/doc/manual/somo/somo_pdb_parsing_expert_mode.html
A us_somo/somo/doc/manual/somo/somo_perceive.html
M us_somo/somo/doc/manual/somo/somo_save.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_skewedGauss.html
M us_somo/somo/doc/manual/somo/somo_uv_vis.html
A us_somo/somo/doc/manual/somo_mals.html
M utils/us_defines.h
M utils/us_extern.h
M utils/us_http_post.cpp
M utils/us_link_ssl.cpp
Log Message:
-----------
Merge branch 'main' into issue-1007-gimp3-logo
Commit: 0528228ee80ceba80429b97a74c2bcc2a42e8ce3
https://github.com/ehb54/ultrascan3/commit/0528228ee80ceba80429b97a74c2bcc2a42e8ce3
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-09-02 (Wed, 02 Sep 2026)
Changed paths:
M VERSION
M doc/manual/source/conf.py
M gui.pri
M gui/us_plot.cpp
M gui/us_plot.h
M gui/us_solution_gui.cpp
M gui/us_theme.cpp
M gui/us_theme.h
M gui/us_widgets.cpp
M gui/us_widgets_dialog.cpp
M programs/us_config/us_color.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M us_somo/develop/include/us_hydrodyn_perceive_dialog.h
M utils/us_defines.h
Log Message:
-----------
Merge branch 'main' into 875-request-cmake-remove-gmp-module-from-installer-for-osx
Commit: 6ccb5e00af0f0ae7f1ed8414c4e2f5719d5e7fad
https://github.com/ehb54/ultrascan3/commit/6ccb5e00af0f0ae7f1ed8414c4e2f5719d5e7fad
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-09-02 (Wed, 02 Sep 2026)
Changed paths:
M admin/cmake/packaging/macos/MacDeploy.cmake
M admin/cmake/packaging/macos/MacHpcDeploy.cmake
M doc/manual/source/start_page-new.rst
M pkg/macos/README.md
M pkg/macos/preinstall
M programs/CMakeLists.txt
Log Message:
-----------
Merge pull request #473 from ehb54/875-request-cmake-remove-gmp-module-from-installer-for-osx
Exclude GMP tools from macOS installer build
Commit: 9e741c31ad26325fec3bfad5bf0fd53edc3bb903
https://github.com/ehb54/ultrascan3/commit/9e741c31ad26325fec3bfad5bf0fd53edc3bb903
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-09-02 (Wed, 02 Sep 2026)
Changed paths:
M admin/cmake/packaging/macos/MacDeploy.cmake
M admin/cmake/packaging/macos/MacHpcDeploy.cmake
M doc/manual/source/start_page-new.rst
M pkg/macos/README.md
M pkg/macos/preinstall
M programs/CMakeLists.txt
Log Message:
-----------
Merge branch 'main' into issue-1007-gimp3-logo
Commit: 0aa2dd63f399b67f62333bd302f669757f272e36
https://github.com/ehb54/ultrascan3/commit/0aa2dd63f399b67f62333bd302f669757f272e36
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-09-02 (Wed, 02 Sep 2026)
Changed paths:
A doc/develop/gimp/README.md
A doc/develop/gimp/ultrascan_gimpv3.scm
Log Message:
-----------
Merge pull request #514 from ehb54/issue-1007-gimp3-logo
Add GIMP 3 UltraScan logo generator
Commit: 564f935ad8aa9a91973d55d9f10ebaff0afb8cf2
https://github.com/ehb54/ultrascan3/commit/564f935ad8aa9a91973d55d9f10ebaff0afb8cf2
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-09-02 (Wed, 02 Sep 2026)
Changed paths:
M etc/etc_belongs_list.txt
Log Message:
-----------
List etc/icons in etc_belongs_list.txt so clean_etc_dir stops moving it out of the source tree on every GUI run
Commit: dfe61816037019275299b4ed955e68028839dc48
https://github.com/ehb54/ultrascan3/commit/dfe61816037019275299b4ed955e68028839dc48
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-09-02 (Wed, 02 Sep 2026)
Changed paths:
M .github/workflows/build-macos-arm.yml
M .github/workflows/build-macos-intel.yml
M .github/workflows/build-oraclelinux.yml
M .github/workflows/build-ubuntu.yml
M .github/workflows/build-windows.yml
M .github/workflows/nightly-build.yml
M .github/workflows/release.yml
M CMakeLists.txt
M admin/cmake/packaging/linux/LinuxDeploy.cmake
M admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
M admin/cmake/packaging/windows/WinDeploy.cmake
M admin/cmake/toolchain.cmake
M scripts/bootstrap-linux.sh
M scripts/build.ps1
M scripts/build.sh
A scripts/prepare-windows-ci.ps1
A scripts/warm-cache-windows.ps1
M scripts/warm-cache.sh
Log Message:
-----------
Fix nightly build and cache reliability (#1008)
Commit: 3eb176b747008032a3062ce586ffaab1b0a748a7
https://github.com/ehb54/ultrascan3/commit/3eb176b747008032a3062ce586ffaab1b0a748a7
Author: aaron-auc <aaron at aucsolutions.com>
Date: 2026-09-02 (Wed, 02 Sep 2026)
Changed paths:
A .github/actions/build-package/action.yml
A .github/workflows/app-build.yml
R .github/workflows/build-macos-arm.yml
R .github/workflows/build-macos-intel.yml
R .github/workflows/build-oraclelinux.yml
R .github/workflows/build-ubuntu.yml
R .github/workflows/build-windows.yml
M .github/workflows/bump-version.yml
M .github/workflows/nightly-build.yml
M .github/workflows/on-demand-build.yml
M .github/workflows/release.yml
M .github/workflows/static-analysis.yml
A .github/workflows/toolchain-build.yml
M .github/workflows/unit-tests-v2.yml
M .gitignore
M CMakePresets.json
M admin/cmake/README.md
M admin/cmake/packaging/linux/LinuxDeploy.cmake
M admin/cmake/packaging/windows/WinDeploy.cmake
M admin/cmake/toolchain.cmake
M admin/cmake/triplets/arm64-windows.cmake
A admin/cmake/triplets/x64-windows.cmake
A buildsys/docker/oraclelinux8.Dockerfile
A buildsys/docker/ubuntu2404.Dockerfile
A buildsys/toolchain.lock.json
R buildsys/vcpkg/overlay-ports/qtbase/GLIB2-static.patch
R buildsys/vcpkg/overlay-ports/qtbase/allow_outside_prefix.patch
R buildsys/vcpkg/overlay-ports/qtbase/clang-cl_QGADGET_fix.diff
R buildsys/vcpkg/overlay-ports/qtbase/clang-cl_source_location.patch
R buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_install_copyright.cmake
R buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_install_submodule.cmake
R buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_port_details.cmake
R buildsys/vcpkg/overlay-ports/qtbase/config_install.patch
R buildsys/vcpkg/overlay-ports/qtbase/dont_force_cmakecache_latest.patch
R buildsys/vcpkg/overlay-ports/qtbase/env.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix-host-aliasing.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix-libresolv-test.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix-link-lib-discovery.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix-missing-include.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix_cmake_build.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix_deploy_windows.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix_egl.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix_egl_2.patch
R buildsys/vcpkg/overlay-ports/qtbase/framework.patch
R buildsys/vcpkg/overlay-ports/qtbase/harfbuzz.patch
R buildsys/vcpkg/overlay-ports/qtbase/installed_dir.patch
R buildsys/vcpkg/overlay-ports/qtbase/macdeployqt-symlinks.patch
R buildsys/vcpkg/overlay-ports/qtbase/moltenvk.patch
R buildsys/vcpkg/overlay-ports/qtbase/port.data.cmake
R buildsys/vcpkg/overlay-ports/qtbase/portfile.cmake
R buildsys/vcpkg/overlay-ports/qtbase/qmake.debug.bat
R buildsys/vcpkg/overlay-ports/qtbase/qt.conf.in
R buildsys/vcpkg/overlay-ports/qtbase/qtpaths.debug.bat
R buildsys/vcpkg/overlay-ports/qtbase/use-shared-mime-info.patch
R buildsys/vcpkg/overlay-ports/qtbase/use_inotify_on_freebsd.patch
R buildsys/vcpkg/overlay-ports/qtbase/vcpkg.json
R buildsys/vcpkg/overlay-ports/qtbase/windeployqt.debug.bat
R buildsys/vcpkg/overlay-ports/qtbase/xcodebuild-not-installed.patch
M scripts/bootstrap-linux.sh
M scripts/bootstrap-macos.sh
A scripts/build-toolchain.ps1
A scripts/build-toolchain.sh
M scripts/build.ps1
M scripts/build.sh
A scripts/fetch-toolchain.ps1
A scripts/fetch-toolchain.sh
M scripts/prepare-windows-ci.ps1
R scripts/warm-cache-windows.ps1
R scripts/warm-cache.sh
M vcpkg.json
Log Message:
-----------
Replace per-platform dependency builds with a pinned prebuilt toolchain and a single application build workflow
Commit: 990e5835123d7e7e870a2f3ba71ab89b9a15be73
https://github.com/ehb54/ultrascan3/commit/990e5835123d7e7e870a2f3ba71ab89b9a15be73
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-02 (Wed, 02 Sep 2026)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS -- add backward compatibility for processing integrations with DB records whose JSON does not have sample tier...
Commit: 901db3d6bfdc71ff147a0c723bed2b59ada755be
https://github.com/ehb54/ultrascan3/commit/901db3d6bfdc71ff147a0c723bed2b59ada755be
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-02 (Wed, 02 Sep 2026)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
Log Message:
-----------
[and plot ranges correctly]GMP-ABDE: 5. ANALYSIS -- add backward compatibility for processing integrations with DB records whose JSON does not have sample tier...
Commit: 293a0f5b25defdcdec19735facce41e55b2d0145
https://github.com/ehb54/ultrascan3/commit/293a0f5b25defdcdec19735facce41e55b2d0145
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-02 (Wed, 02 Sep 2026)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
[use original analytes names in rpeort int. section && plot labels]GMP-ABDE: 5. ANALYSIS -- add backward compatibility for processing integrations with DB records whose JSON does not have sample tier...
Commit: aa575c815c808baf5368d6f7e17e5d83939ef082
https://github.com/ehb54/ultrascan3/commit/aa575c815c808baf5368d6f7e17e5d83939ef082
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-02 (Wed, 02 Sep 2026)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
Log Message:
-----------
[[1]use original analytes names in rpeort int. section && plot labels]GMP-ABDE: 5. ANALYSIS -- add backward compatibility for processing integrations with DB records whose JSON does not have sample tier...
Commit: 3fb5c9f9ebb8880831f5cba6bcd2ea46a75d1b34
https://github.com/ehb54/ultrascan3/commit/3fb5c9f9ebb8880831f5cba6bcd2ea46a75d1b34
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-09-03 (Thu, 03 Sep 2026)
Changed paths:
A .github/actions/build-package/action.yml
A .github/workflows/app-build.yml
R .github/workflows/build-macos-arm.yml
R .github/workflows/build-macos-intel.yml
R .github/workflows/build-oraclelinux.yml
R .github/workflows/build-ubuntu.yml
R .github/workflows/build-windows.yml
M .github/workflows/bump-version.yml
M .github/workflows/nightly-build.yml
M .github/workflows/on-demand-build.yml
M .github/workflows/release.yml
M .github/workflows/static-analysis.yml
A .github/workflows/toolchain-build.yml
M .github/workflows/unit-tests-v2.yml
M .gitignore
M CMakeLists.txt
M CMakePresets.json
M admin/cmake/README.md
M admin/cmake/packaging/linux/LinuxDeploy.cmake
M admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
M admin/cmake/packaging/windows/WinDeploy.cmake
M admin/cmake/toolchain.cmake
M admin/cmake/triplets/arm64-windows.cmake
A admin/cmake/triplets/x64-windows.cmake
A buildsys/docker/oraclelinux8.Dockerfile
A buildsys/docker/ubuntu2404.Dockerfile
A buildsys/toolchain.lock.json
R buildsys/vcpkg/overlay-ports/qtbase/GLIB2-static.patch
R buildsys/vcpkg/overlay-ports/qtbase/allow_outside_prefix.patch
R buildsys/vcpkg/overlay-ports/qtbase/clang-cl_QGADGET_fix.diff
R buildsys/vcpkg/overlay-ports/qtbase/clang-cl_source_location.patch
R buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_install_copyright.cmake
R buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_install_submodule.cmake
R buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_port_details.cmake
R buildsys/vcpkg/overlay-ports/qtbase/config_install.patch
R buildsys/vcpkg/overlay-ports/qtbase/dont_force_cmakecache_latest.patch
R buildsys/vcpkg/overlay-ports/qtbase/env.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix-host-aliasing.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix-libresolv-test.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix-link-lib-discovery.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix-missing-include.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix_cmake_build.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix_deploy_windows.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix_egl.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix_egl_2.patch
R buildsys/vcpkg/overlay-ports/qtbase/framework.patch
R buildsys/vcpkg/overlay-ports/qtbase/harfbuzz.patch
R buildsys/vcpkg/overlay-ports/qtbase/installed_dir.patch
R buildsys/vcpkg/overlay-ports/qtbase/macdeployqt-symlinks.patch
R buildsys/vcpkg/overlay-ports/qtbase/moltenvk.patch
R buildsys/vcpkg/overlay-ports/qtbase/port.data.cmake
R buildsys/vcpkg/overlay-ports/qtbase/portfile.cmake
R buildsys/vcpkg/overlay-ports/qtbase/qmake.debug.bat
R buildsys/vcpkg/overlay-ports/qtbase/qt.conf.in
R buildsys/vcpkg/overlay-ports/qtbase/qtpaths.debug.bat
R buildsys/vcpkg/overlay-ports/qtbase/use-shared-mime-info.patch
R buildsys/vcpkg/overlay-ports/qtbase/use_inotify_on_freebsd.patch
R buildsys/vcpkg/overlay-ports/qtbase/vcpkg.json
R buildsys/vcpkg/overlay-ports/qtbase/windeployqt.debug.bat
R buildsys/vcpkg/overlay-ports/qtbase/xcodebuild-not-installed.patch
M etc/etc_belongs_list.txt
M scripts/bootstrap-linux.sh
M scripts/bootstrap-macos.sh
A scripts/build-toolchain.ps1
A scripts/build-toolchain.sh
M scripts/build.ps1
M scripts/build.sh
A scripts/fetch-toolchain.ps1
A scripts/fetch-toolchain.sh
A scripts/prepare-windows-ci.ps1
R scripts/warm-cache.sh
M vcpkg.json
Log Message:
-----------
Merge pull request #535 from ehb54/pr/etc-icons-hygiene
Preserve tracked icons during source-tree cleanup
Commit: 87ba665f7c798cdeef10fba72ee210bbbf6cd41f
https://github.com/ehb54/ultrascan3/commit/87ba665f7c798cdeef10fba72ee210bbbf6cd41f
Author: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Date: 2026-09-03 (Thu, 03 Sep 2026)
Changed paths:
M buildsys/toolchain.lock.json
Log Message:
-----------
Update dependency toolchain pin for 5 targets (run 33765058513) (#550)
Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
Commit: f6637eacf9c63e9c0059e6d29f9403e343753be0
https://github.com/ehb54/ultrascan3/commit/f6637eacf9c63e9c0059e6d29f9403e343753be0
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-09-05 (Sat, 05 Sep 2026)
Changed paths:
M test/utils/test_us_memory.cpp
M utils/us_memory.cpp
Log Message:
-----------
Correct macOS system-memory reporting (#536)
* Report system-wide memory use on macOS instead of the calling process's resident set
* Keep the RSS growth test's allocation alive so an optimizing build cannot delete it
Commit: 5c9a3bbd1feadcc8d973f2e99fa227d98d67f63f
https://github.com/ehb54/ultrascan3/commit/5c9a3bbd1feadcc8d973f2e99fa227d98d67f63f
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-09-06 (Sun, 06 Sep 2026)
Changed paths:
M .github/workflows/bump-version.yml
M doc/manual/source/conf.py
M vcpkg.json
Log Message:
-----------
Keep version metadata synchronized (#549)
Commit: d76e76586bc139d9a30a1ab9d13b30c07adf318e
https://github.com/ehb54/ultrascan3/commit/d76e76586bc139d9a30a1ab9d13b30c07adf318e
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-09-06 (Sun, 06 Sep 2026)
Changed paths:
A .github/workflows/unit-tests-qt5-v2.yml
A .github/workflows/unit-tests-qt6-v2.yml
R .github/workflows/unit-tests-v2.yml
M .gitignore
M CMakeLists.txt
M admin/test/docker/Dockerfile
M gui/us_gui_settings.cpp
M gui/us_theme.cpp
M test-docker.sh
M test/CMakeLists.txt
M test/README
A test/common/us3_gui_test_main.h
A test/gui/CMakeLists.txt
A test/gui/test_us_editor_gui.cpp
A test/gui/test_us_gui_test_isolation.cpp
M test/utils/CMakeLists.txt
A test/utils/test_us_build_variant.cpp
M test/utils/test_us_model.cpp
A test/utils/test_us_test_environment.cpp
M test/utils/test_us_utils_main.cpp
M utils/us_settings.cpp
M utils/us_settings.h
Log Message:
-----------
Isolate and align utility tests across supported builds (#537)
* Isolate unit-test settings and writable paths in a per-process sandbox
* Make the DB-enabled and NO_DB test builds internally consistent and buildable side by side
* Add an opt-in gcov coverage build and a one-command utils coverage report
* Give the discovered utils tests a label that ctest -L can actually select
* Ignore the local build-mac directory
* Split the unit-test workflow into Qt5 and Qt6 variants so the suite runs under both
* Run the Qt6 unit-test steps under bash so PIPESTATUS parses and a failing build is not masked by tee
* Fail the Qt5 unit-test step on a broken build instead of reporting tee's success
* Keep the DB mock test with its query refactor
* Add isolated GUI test infrastructure
* Route UltraScan settings through US_SettingsStore so a test run can redirect them instead of writing the developer's real preferences
* Keep simulator tests with the simulator layer
* Clean up Qt5 workflow whitespace
* Replace the tautological US_Model component-search and edge-case tests with calc_coefficients assertions
* Remove local task history from test documentation
* Condense test foundation comments
* Remove redundant Qt6 references from Qt5 header
* Remove redundant Qt5 comparisons from Qt6 workflow
Commit: 18126fa147dbf789d297deb549d8e26e52f924d0
https://github.com/ehb54/ultrascan3/commit/18126fa147dbf789d297deb549d8e26e52f924d0
Author: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Date: 2026-09-06 (Sun, 06 Sep 2026)
Changed paths:
M buildsys/toolchain.lock.json
Log Message:
-----------
Update dependency toolchain pin for 5 targets (run 34031578244) (#551)
Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
Co-authored-by: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Commit: 79c6e36317affce3fad61a34b6a832220bbaf152
https://github.com/ehb54/ultrascan3/commit/79c6e36317affce3fad61a34b6a832220bbaf152
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-08 (Tue, 08 Sep 2026)
Changed paths:
M gui/us_report_gui.cpp
M gui/us_report_gui.h
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M utils/us_report_gmp.cpp
M utils/us_report_gmp.h
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS && REPORT -- refactoring on using full analystes names labels in plots when running from withing ABDE-GMP & stand-alone Report programs...
Commit: 1bb470346f619e2e9e1da4cc0639f96991c3b9e7
https://github.com/ehb54/ultrascan3/commit/1bb470346f619e2e9e1da4cc0639f96991c3b9e7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-08 (Tue, 08 Sep 2026)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP-ABDE: 5. ANALYSIS && REPORT -- test for using Qgroupbox dialog for selecting signals for different analytes (per-channel) whose integration results to be reported...
Commit: 693c555a97ea5d3072e4a399d27e81dd2384a0e9
https://github.com/ehb54/ultrascan3/commit/693c555a97ea5d3072e4a399d27e81dd2384a0e9
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-08 (Tue, 08 Sep 2026)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
Log Message:
-----------
[Fix for the the old deprecated 3-int-button overload in QMessageBox]GMP-ABDE: 5. ANALYSIS && REPORT -- test for using Qgroupbox dialog for selecting signals for different analytes (per-channel) whose integration results to be reported...
Commit: d3ea8b42cb9de5b5dd6686e67eb4ffdf10626c9c
https://github.com/ehb54/ultrascan3/commit/d3ea8b42cb9de5b5dd6686e67eb4ffdf10626c9c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-09 (Wed, 09 Sep 2026)
Changed paths:
A .github/actions/build-package/action.yml
A .github/workflows/app-build.yml
R .github/workflows/build-macos-arm.yml
R .github/workflows/build-macos-intel.yml
R .github/workflows/build-oraclelinux.yml
R .github/workflows/build-ubuntu.yml
R .github/workflows/build-windows.yml
M .github/workflows/bump-version.yml
M .github/workflows/nightly-build.yml
M .github/workflows/on-demand-build.yml
M .github/workflows/release.yml
M .github/workflows/static-analysis.yml
A .github/workflows/toolchain-build.yml
A .github/workflows/unit-tests-qt5-v2.yml
A .github/workflows/unit-tests-qt6-v2.yml
R .github/workflows/unit-tests-v2.yml
M .gitignore
M CMakeLists.txt
M CMakePresets.json
M admin/cmake/README.md
M admin/cmake/packaging/linux/LinuxDeploy.cmake
M admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
M admin/cmake/packaging/macos/MacDeploy.cmake
M admin/cmake/packaging/macos/MacHpcDeploy.cmake
M admin/cmake/packaging/windows/WinDeploy.cmake
M admin/cmake/toolchain.cmake
M admin/cmake/triplets/arm64-windows.cmake
A admin/cmake/triplets/x64-windows.cmake
M admin/test/docker/Dockerfile
A buildsys/docker/oraclelinux8.Dockerfile
A buildsys/docker/ubuntu2404.Dockerfile
A buildsys/toolchain.lock.json
R buildsys/vcpkg/overlay-ports/qtbase/GLIB2-static.patch
R buildsys/vcpkg/overlay-ports/qtbase/allow_outside_prefix.patch
R buildsys/vcpkg/overlay-ports/qtbase/clang-cl_QGADGET_fix.diff
R buildsys/vcpkg/overlay-ports/qtbase/clang-cl_source_location.patch
R buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_install_copyright.cmake
R buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_install_submodule.cmake
R buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_port_details.cmake
R buildsys/vcpkg/overlay-ports/qtbase/config_install.patch
R buildsys/vcpkg/overlay-ports/qtbase/dont_force_cmakecache_latest.patch
R buildsys/vcpkg/overlay-ports/qtbase/env.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix-host-aliasing.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix-libresolv-test.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix-link-lib-discovery.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix-missing-include.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix_cmake_build.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix_deploy_windows.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix_egl.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix_egl_2.patch
R buildsys/vcpkg/overlay-ports/qtbase/framework.patch
R buildsys/vcpkg/overlay-ports/qtbase/harfbuzz.patch
R buildsys/vcpkg/overlay-ports/qtbase/installed_dir.patch
R buildsys/vcpkg/overlay-ports/qtbase/macdeployqt-symlinks.patch
R buildsys/vcpkg/overlay-ports/qtbase/moltenvk.patch
R buildsys/vcpkg/overlay-ports/qtbase/port.data.cmake
R buildsys/vcpkg/overlay-ports/qtbase/portfile.cmake
R buildsys/vcpkg/overlay-ports/qtbase/qmake.debug.bat
R buildsys/vcpkg/overlay-ports/qtbase/qt.conf.in
R buildsys/vcpkg/overlay-ports/qtbase/qtpaths.debug.bat
R buildsys/vcpkg/overlay-ports/qtbase/use-shared-mime-info.patch
R buildsys/vcpkg/overlay-ports/qtbase/use_inotify_on_freebsd.patch
R buildsys/vcpkg/overlay-ports/qtbase/vcpkg.json
R buildsys/vcpkg/overlay-ports/qtbase/windeployqt.debug.bat
R buildsys/vcpkg/overlay-ports/qtbase/xcodebuild-not-installed.patch
A doc/develop/gimp/README.md
A doc/develop/gimp/ultrascan_gimpv3.scm
M doc/manual/source/conf.py
M doc/manual/source/start_page-new.rst
M etc/etc_belongs_list.txt
M gui/us_gui_settings.cpp
M gui/us_theme.cpp
M pkg/macos/README.md
M pkg/macos/preinstall
M programs/CMakeLists.txt
M scripts/bootstrap-linux.sh
M scripts/bootstrap-macos.sh
A scripts/build-toolchain.ps1
A scripts/build-toolchain.sh
M scripts/build.ps1
M scripts/build.sh
A scripts/fetch-toolchain.ps1
A scripts/fetch-toolchain.sh
A scripts/prepare-windows-ci.ps1
R scripts/warm-cache.sh
M test-docker.sh
M test/CMakeLists.txt
M test/README
A test/common/us3_gui_test_main.h
A test/gui/CMakeLists.txt
A test/gui/test_us_editor_gui.cpp
A test/gui/test_us_gui_test_isolation.cpp
M test/utils/CMakeLists.txt
A test/utils/test_us_build_variant.cpp
M test/utils/test_us_memory.cpp
M test/utils/test_us_model.cpp
A test/utils/test_us_test_environment.cpp
M test/utils/test_us_utils_main.cpp
M utils/us_memory.cpp
M utils/us_settings.cpp
M utils/us_settings.h
M vcpkg.json
Log Message:
-----------
Merge branch 'main' into alexey-dev-issue1027
Commit: e77a8e08abb9c95b75b06fbbbca755a8e96dbd70
https://github.com/ehb54/ultrascan3/commit/e77a8e08abb9c95b75b06fbbbca755a8e96dbd70
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-10 (Thu, 10 Sep 2026)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
Log Message:
-----------
GMP: 1. EXP.: 8. APorfile->ABDE -- fix geomentry...
Commit: 0ece7d122a0bf79542d72588451802c67c759f3f
https://github.com/ehb54/ultrascan3/commit/0ece7d122a0bf79542d72588451802c67c759f3f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-10 (Thu, 10 Sep 2026)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
Log Message:
-----------
[1]GMP: 1. EXP.: 8. APorfile->ABDE -- fix geomentry...
Commit: e19d3ad4788cb49eda629315b7a4d174f525dc90
https://github.com/ehb54/ultrascan3/commit/e19d3ad4788cb49eda629315b7a4d174f525dc90
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-10 (Thu, 10 Sep 2026)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
Log Message:
-----------
[2]GMP: 1. EXP.: 8. APorfile->ABDE -- fix geomentry...
Commit: 43ed4ca9aee2a5c11780125be0f16f126c719f82
https://github.com/ehb54/ultrascan3/commit/43ed4ca9aee2a5c11780125be0f16f126c719f82
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-10 (Thu, 10 Sep 2026)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
Log Message:
-----------
[3]GMP: 1. EXP.: 8. APorfile->ABDE -- fix geomentry...
Commit: 53f965478f5612cd101ddf02b0a267ee5f60eeae
https://github.com/ehb54/ultrascan3/commit/53f965478f5612cd101ddf02b0a267ee5f60eeae
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-10 (Thu, 10 Sep 2026)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
Log Message:
-----------
[3a]GMP: 1. EXP.: 8. APorfile->ABDE -- fix geomentry...
Commit: 3c7455858566e6d7767c50ca822cd435c76bb5df
https://github.com/ehb54/ultrascan3/commit/3c7455858566e6d7767c50ca822cd435c76bb5df
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-10 (Thu, 10 Sep 2026)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
Log Message:
-----------
[4]GMP: 1. EXP.: 8. APorfile->ABDE -- fix geomentry...
Commit: cc9b9fbec5f67af39781579147bf528d19d12fce
https://github.com/ehb54/ultrascan3/commit/cc9b9fbec5f67af39781579147bf528d19d12fce
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-10 (Thu, 10 Sep 2026)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
Log Message:
-----------
[4a]GMP: 1. EXP.: 8. APorfile->ABDE -- fix geomentry...ush
Commit: c4fd147ae564f10f4f9363aa2926b0b5b763db87
https://github.com/ehb54/ultrascan3/commit/c4fd147ae564f10f4f9363aa2926b0b5b763db87
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-10 (Thu, 10 Sep 2026)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
Log Message:
-----------
[5a]GMP: 1. EXP.: 8. APorfile->ABDE -- fix geomentry...ushush
Commit: c3326ba03268f26c6aad6b94033e68bcf35de02e
https://github.com/ehb54/ultrascan3/commit/c3326ba03268f26c6aad6b94033e68bcf35de02e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-10 (Thu, 10 Sep 2026)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
Log Message:
-----------
[5b]GMP: 1. EXP.: 8. APorfile->ABDE -- fix geomentry...ushush
Commit: b42223145a9c38822bcf6ab68c5e4e13bd1e2c00
https://github.com/ehb54/ultrascan3/commit/b42223145a9c38822bcf6ab68c5e4e13bd1e2c00
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-11 (Fri, 11 Sep 2026)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP: 6. REPORT | stand-alone Reporter -- fix pagiantion errors in User Interactions seciton...
Commit: 1a328fca69431054278213b71b4348034457dbd2
https://github.com/ehb54/ultrascan3/commit/1a328fca69431054278213b71b4348034457dbd2
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-11 (Fri, 11 Sep 2026)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
Log Message:
-----------
Merge pull request #556 from ehb54/alexey-dev-issue1059
Fixed AProfile GUI for ABDE-GMP
Commit: 7fee4e121dc8a20017b531b1aeddc15a1efd1325
https://github.com/ehb54/ultrascan3/commit/7fee4e121dc8a20017b531b1aeddc15a1efd1325
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-11 (Fri, 11 Sep 2026)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
Log Message:
-----------
Merge branch 'main' into alexey-dev-issue1027
Commit: 0dacca20a3a41ce52414b0adece6607341d210d2
https://github.com/ehb54/ultrascan3/commit/0dacca20a3a41ce52414b0adece6607341d210d2
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-11 (Fri, 11 Sep 2026)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
Log Message:
-----------
Q_FOREACH changed to for loop while going over JSON...
Commit: 8d45c38201ca798b9707b2a6d860529e61d7f723
https://github.com/ehb54/ultrascan3/commit/8d45c38201ca798b9707b2a6d860529e61d7f723
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-11 (Fri, 11 Sep 2026)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
Log Message:
-----------
Merge branch 'alexey-dev-issue1027' of github.com:ehb54/ultrascan3 into alexey-dev-issue1027
Commit: f1c3182e7b33b370e847327a480c92c905ded4d7
https://github.com/ehb54/ultrascan3/commit/f1c3182e7b33b370e847327a480c92c905ded4d7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-13 (Sun, 13 Sep 2026)
Changed paths:
M gui/us_report_gui.cpp
M gui/us_report_gui.h
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M utils/us_report_gmp.cpp
M utils/us_report_gmp.h
Log Message:
-----------
Merge pull request #534 from ehb54/alexey-dev-issue1027
GMP-ABDE: add integration info for both DNA and protein signals in the report
Commit: 044424575cfe034dc857c2de1b564d28d85470e7
https://github.com/ehb54/ultrascan3/commit/044424575cfe034dc857c2de1b564d28d85470e7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-13 (Sun, 13 Sep 2026)
Changed paths:
M gui/us_report_gui.cpp
M gui/us_report_gui.h
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M utils/us_report_gmp.cpp
M utils/us_report_gmp.h
Log Message:
-----------
Merge branch 'main' into alexey-dev-issue1060
Commit: af46c846e6727147d7f4f6bf3141d55cd95a736d
https://github.com/ehb54/ultrascan3/commit/af46c846e6727147d7f4f6bf3141d55cd95a736d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-13 (Sun, 13 Sep 2026)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
Merge pull request #558 from ehb54/alexey-dev-issue1060
GMP: 6. REPORT | stand-alone Reporter -- fix pagiantion errors in User Interaction Section
Commit: bf1f4fc5a092002be85ff2a6220b1b861eb6b186
https://github.com/ehb54/ultrascan3/commit/bf1f4fc5a092002be85ff2a6220b1b861eb6b186
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-14 (Mon, 14 Sep 2026)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
Log Message:
-----------
ABDE-GMP: 4. EDIT-> Manual Edit | Baseline Correction -- fix geomentries...
Commit: ae2c84406401107f90527128a16c586b023ec28c
https://github.com/ehb54/ultrascan3/commit/ae2c84406401107f90527128a16c586b023ec28c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-14 (Mon, 14 Sep 2026)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[1]ABDE-GMP: 4. EDIT-> Manual Edit | Baseline Correction -- fix geomentries...
Commit: f97c13d7b20760f631de30792a89ff448bce7a2e
https://github.com/ehb54/ultrascan3/commit/f97c13d7b20760f631de30792a89ff448bce7a2e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-14 (Mon, 14 Sep 2026)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[2]ABDE-GMP: 4. EDIT-> Manual Edit | Baseline Correction -- fix geomentries...
Commit: 1179ec5ce7160c3bb242aaa6d1ce48aef334eef2
https://github.com/ehb54/ultrascan3/commit/1179ec5ce7160c3bb242aaa6d1ce48aef334eef2
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-14 (Mon, 14 Sep 2026)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
Log Message:
-----------
[3]ABDE-GMP: 4. EDIT-> Manual Edit | Baseline Correction -- fix geomentries...
Commit: 546c19539248d98b2885bc53db4693ba8ee168f7
https://github.com/ehb54/ultrascan3/commit/546c19539248d98b2885bc53db4693ba8ee168f7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-14 (Mon, 14 Sep 2026)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[3a]ABDE-GMP: 4. EDIT-> Manual Edit | Baseline Correction -- fix geomentries...
Commit: 9e4a7db550dceebe68c1ebe10dfae358409c6eb7
https://github.com/ehb54/ultrascan3/commit/9e4a7db550dceebe68c1ebe10dfae358409c6eb7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-15 (Tue, 15 Sep 2026)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[4]ABDE-GMP: 4. EDIT-> Manual Edit | Baseline Correction -- fix geomentries...
Commit: 15bb134228b0367b89ed700238299e657d95b58e
https://github.com/ehb54/ultrascan3/commit/15bb134228b0367b89ed700238299e657d95b58e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-15 (Tue, 15 Sep 2026)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[4a]ABDE-GMP: 4. EDIT-> Manual Edit | Baseline Correction -- fix geomentries...
Commit: 9e924b7d8ff83b96cfbf21855eeff34da8f4b5af
https://github.com/ehb54/ultrascan3/commit/9e924b7d8ff83b96cfbf21855eeff34da8f4b5af
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-15 (Tue, 15 Sep 2026)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
Log Message:
-----------
[5]ABDE-GMP: 4. EDIT-> Manual Edit | Baseline Correction -- fix geomentries...
Commit: b92db1535e09fbd5e336a9a1a13751fe62153302
https://github.com/ehb54/ultrascan3/commit/b92db1535e09fbd5e336a9a1a13751fe62153302
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-15 (Tue, 15 Sep 2026)
Changed paths:
M gui/us_plot.cpp
M gui/us_plot.h
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[6 && plot's title width]ABDE-GMP: 4. EDIT-> Manual Edit | Baseline Correction -- fix geomentries...
Commit: 2dce147733b801a0e8a6f92b5cfd06da47082502
https://github.com/ehb54/ultrascan3/commit/2dce147733b801a0e8a6f92b5cfd06da47082502
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-15 (Tue, 15 Sep 2026)
Changed paths:
M gui/us_plot.cpp
M gui/us_plot.h
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[7 && plot's title width]ABDE-GMP: 4. EDIT-> Manual Edit | Baseline Correction -- fix geomentries...
Commit: c8a7fecdd8f4f8eb2f9a3af9ddc0676a1ca7794e
https://github.com/ehb54/ultrascan3/commit/c8a7fecdd8f4f8eb2f9a3af9ddc0676a1ca7794e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-15 (Tue, 15 Sep 2026)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
Log Message:
-----------
ABDE-GMP: 5. ANALYSIS | Normalization -- change color of the mouse cross-section to black to not blend with the light background...
Commit: d2bc91a4c792b5edc40dc5021affd4569284785c
https://github.com/ehb54/ultrascan3/commit/d2bc91a4c792b5edc40dc5021affd4569284785c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-15 (Tue, 15 Sep 2026)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
Log Message:
-----------
[and the colors of both picks]ABDE-GMP: 5. ANALYSIS | Normalization -- change color of the mouse cross-section to black to not blend with the light background...
Commit: 716585b3f3bbb97803d4389089dd8d158502a7f9
https://github.com/ehb54/ultrascan3/commit/716585b3f3bbb97803d4389089dd8d158502a7f9
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2026-09-15 (Tue, 15 Sep 2026)
Changed paths:
M gui/us_plot.cpp
M gui/us_plot.h
M programs/us_abde/us_norm_profile.cpp
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
Log Message:
-----------
Merge pull request #561 from ehb54/alexey-dev-issue1061
Fixed geometries for different US_Edit constructors (ABDE-GMP: Manual Edit, Baseline Correction GUIs)
Commit: 5a2b84f7794c9083afba6423740a9a6827c9da12
https://github.com/ehb54/ultrascan3/commit/5a2b84f7794c9083afba6423740a9a6827c9da12
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-09-18 (Fri, 18 Sep 2026)
Changed paths:
M .github/actions/build-package/action.yml
M .github/workflows/app-build.yml
M CMakePresets.json
M scripts/bootstrap-linux.sh
M scripts/bootstrap-macos.sh
M scripts/build-toolchain.ps1
M scripts/build-toolchain.sh
M scripts/build.ps1
M scripts/build.sh
Log Message:
-----------
Remove Qwt version from Qt 5 CMake preset names (#1047) (#516)
* Rename Qt 5 presets and build options to qt5 (#1047)
Commit: 2b68b27b904c9c533e3a0afe6449b6e99e3323b7
https://github.com/ehb54/ultrascan3/commit/2b68b27b904c9c533e3a0afe6449b6e99e3323b7
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-09-20 (Sun, 20 Sep 2026)
Changed paths:
M CMakeLists.txt
M CMakePresets.json
M admin/cmake/README.md
A admin/cmake/development-triplets/arm64-windows.cmake
A admin/cmake/development-triplets/x64-windows.cmake
M admin/cmake/packaging/macos/StageAssistantDev.cmake
M doc/manual/CMakeLists.txt
M programs/us/CMakeLists.txt
M scripts/build.ps1
M scripts/build.sh
Log Message:
-----------
Add support for Debug configuration in Windows build scripts and CMake presets (#563)
Commit: 34b68e67a16aa802bb79904e0b6a907a31177db9
https://github.com/ehb54/ultrascan3/commit/34b68e67a16aa802bb79904e0b6a907a31177db9
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-09-21 (Mon, 21 Sep 2026)
Changed paths:
M .github/workflows/app-build.yml
M .github/workflows/nightly-build.yml
M .github/workflows/toolchain-build.yml
M README.md
M buildsys/toolchain.lock.json
M scripts/fetch-toolchain.ps1
M scripts/fetch-toolchain.sh
Log Message:
-----------
Reuse upstream toolchains in forks and skip unnecessary builds (#564)
* Fix fork toolchain reuse and automatic pin updates
* Guard fork nightlies and rebuild only changed toolchain targets
Commit: 4993be1c8f42c053457d58b945caca375c5e6d47
https://github.com/ehb54/ultrascan3/commit/4993be1c8f42c053457d58b945caca375c5e6d47
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2026-09-21 (Mon, 21 Sep 2026)
Changed paths:
M gui/us_model_loader.cpp
Log Message:
-----------
Fix loading of MC singlets with model descriptions longer than 100 characters
Commit: 696fd4e60970e0e6892bc17c63ea305d3213ffee
https://github.com/ehb54/ultrascan3/commit/696fd4e60970e0e6892bc17c63ea305d3213ffee
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2026-09-21 (Mon, 21 Sep 2026)
Changed paths:
M gui/us_model_loader.cpp
Log Message:
-----------
fix variable name
Commit: 02cb04fe26cba051e50077098bd1dd302b69b08e
https://github.com/ehb54/ultrascan3/commit/02cb04fe26cba051e50077098bd1dd302b69b08e
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-09-21 (Mon, 21 Sep 2026)
Changed paths:
M gui/us_convert_gui.cpp
M gui/us_run_details2.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_remove_ri.cpp
A programs/us_xpn_viewer/us_xpn_export.h
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
A test/common/us3_file_test_base.h
M test/utils/test_us_buffer.cpp
A test/utils/test_us_dataIO_mutations.cpp
A test/utils/test_us_dataIO_read_contract.cpp
A test/utils/test_us_dataIO_roundtrip.cpp
A test/utils/test_us_dataIO_versions.cpp
M test/utils/test_us_project.cpp
M test/utils/test_us_settings.cpp
A test/utils/test_us_xpn_export.cpp
M utils/us_astfem_math.cpp
M utils/us_cfa_data.cpp
M utils/us_cfa_data.h
M utils/us_dataIO.cpp
M utils/us_dataIO.h
M utils/us_lamm_astfvm.cpp
M utils/us_project.cpp
M utils/us_settings.cpp
M utils/us_settings.h
M utils/us_simparms.cpp
M utils/us_time_state.cpp
M utils/us_xpn_data.cpp
M utils/us_xpn_data.h
Log Message:
-----------
Harden AUC and project disk I/O validation (#538)
* Record the current readRawData contract in a characterization suite
* Cover the auc write and read round trip with tolerances derived from the format
* Add named early-rejection mutation recipes for the auc reader
* Harden the auc reader against short reads and hostile counts and make a rejected read leave the caller's data untouched
* Drive US_Project disk round-trips through production code instead of parsing XML in the test body
* Give each file-writing test its own UltraScan work root so results no longer depend on execution order
* Grow the simulation interpolation bitmap with its readings and stop the writer reading past a short one
* Reject datasets that cannot describe a radius axis and always terminate the stored description
* Leave the caller's project untouched when a malformed file fails to parse
* Reject .auc format versions older than 4, which have never been loadable
* Validate the SetSpeedResolution setting and honor its documented spelling in the timestate
* Reject a radius axis the .auc format cannot describe
* Report .auc write failures instead of discarding them
* Grow the species fit interpolation bitmap with its readings
* Fix AUC save failures and address review feedback
* Remove stale buffer test comment
* Shorten remaining AUC test comments
* Refactor speed resolution handling in US_Settings and related components
Commit: e85b977919ce2fcc06a0f44f593b951ca854a4a2
https://github.com/ehb54/ultrascan3/commit/e85b977919ce2fcc06a0f44f593b951ca854a4a2
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2026-09-24 (Thu, 24 Sep 2026)
Changed paths:
M gui/us_convert_gui.cpp
M gui/us_run_details2.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_remove_ri.cpp
A programs/us_xpn_viewer/us_xpn_export.h
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
A test/common/us3_file_test_base.h
M test/utils/test_us_buffer.cpp
A test/utils/test_us_dataIO_mutations.cpp
A test/utils/test_us_dataIO_read_contract.cpp
A test/utils/test_us_dataIO_roundtrip.cpp
A test/utils/test_us_dataIO_versions.cpp
M test/utils/test_us_project.cpp
M test/utils/test_us_settings.cpp
A test/utils/test_us_xpn_export.cpp
M utils/us_astfem_math.cpp
M utils/us_cfa_data.cpp
M utils/us_cfa_data.h
M utils/us_dataIO.cpp
M utils/us_dataIO.h
M utils/us_lamm_astfvm.cpp
M utils/us_project.cpp
M utils/us_settings.cpp
M utils/us_settings.h
M utils/us_simparms.cpp
M utils/us_time_state.cpp
M utils/us_xpn_data.cpp
M utils/us_xpn_data.h
Log Message:
-----------
Merge branch 'main' into lukas/us_femath-mc-single-loading
Commit: cddd7bf5388da217d242c6cf6dc1416a22b2c62f
https://github.com/ehb54/ultrascan3/commit/cddd7bf5388da217d242c6cf6dc1416a22b2c62f
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-09-24 (Thu, 24 Sep 2026)
Changed paths:
M gui/us_widgets.cpp
M gui/us_widgets_dialog.cpp
M programs/us_colorgradient/us_colorgradient.cpp
Log Message:
-----------
Preserve application style lifetime for counter widgets (#539)
* Stop US_WidgetsDialog::us_counter from replacing the application style once per counter, which freed styles still referenced by earlier buttons
* Restrict the counter button restyle to the native macOS and Windows styles and source the style name the way US_Theme does
* Use Fusion style for counter buttons on macOS and Windows to improve usability
* Refactor counter button styling for macOS and Windows to use Fusion style consistently
* Revert the us_somo counter button changes so this PR only touches the main GUI
* Drop the const from the shared counter button style and check it for null once before styling the buttons
* Use a range-based for loop with const pointers when styling counter buttons
* Make the counter children list const and apply the same safe range-based loop to the button width calculation
Commit: 4f9be88e9f24d781eced4ce2328b26310f54d14a
https://github.com/ehb54/ultrascan3/commit/4f9be88e9f24d781eced4ce2328b26310f54d14a
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2026-09-24 (Thu, 24 Sep 2026)
Changed paths:
M gui/us_widgets.cpp
M gui/us_widgets_dialog.cpp
M programs/us_colorgradient/us_colorgradient.cpp
Log Message:
-----------
Merge branch 'main' into lukas/us_femath-mc-single-loading
Commit: 186d57120d47acdd32e3e268f668fbe01da3a439
https://github.com/ehb54/ultrascan3/commit/186d57120d47acdd32e3e268f668fbe01da3a439
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2026-09-24 (Thu, 24 Sep 2026)
Changed paths:
M gui/us_model_loader.cpp
Log Message:
-----------
Merge pull request #565 from ehb54/lukas/us_femath-mc-single-loading
Fix loading of MC singlets with model descriptions longer than 100 characters
Commit: c0505efd1ffd1e3edd407fe3a526710ddcfcb386
https://github.com/ehb54/ultrascan3/commit/c0505efd1ffd1e3edd407fe3a526710ddcfcb386
Author: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Date: 2026-09-25 (Fri, 25 Sep 2026)
Changed paths:
M buildsys/toolchain.lock.json
Log Message:
-----------
Update dependency toolchain pin for 5 targets (run 35610617987) (#566)
Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
Co-authored-by: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Commit: 0c919d1c5a5bf0357cde1fad1b225d845a28ab81
https://github.com/ehb54/ultrascan3/commit/0c919d1c5a5bf0357cde1fad1b225d845a28ab81
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2026-09-25 (Fri, 25 Sep 2026)
Changed paths:
A .github/actions/build-package/action.yml
A .github/workflows/app-build.yml
R .github/workflows/build-macos-arm.yml
R .github/workflows/build-macos-intel.yml
R .github/workflows/build-oraclelinux.yml
R .github/workflows/build-ubuntu.yml
R .github/workflows/build-windows.yml
M .github/workflows/bump-version.yml
M .github/workflows/nightly-build.yml
M .github/workflows/on-demand-build.yml
M .github/workflows/release.yml
M .github/workflows/static-analysis.yml
A .github/workflows/toolchain-build.yml
A .github/workflows/unit-tests-qt5-v2.yml
A .github/workflows/unit-tests-qt6-v2.yml
R .github/workflows/unit-tests-v2.yml
M .gitignore
M CMakeLists.txt
M CMakePresets.json
M README.md
M VERSION
M admin/cmake/README.md
A admin/cmake/development-triplets/arm64-windows.cmake
A admin/cmake/development-triplets/x64-windows.cmake
M admin/cmake/packaging/linux/LinuxDeploy.cmake
M admin/cmake/packaging/linux/LinuxHpcDeploy.cmake
M admin/cmake/packaging/macos/MacDeploy.cmake
M admin/cmake/packaging/macos/MacHpcDeploy.cmake
M admin/cmake/packaging/macos/StageAssistantDev.cmake
M admin/cmake/packaging/windows/WinDeploy.cmake
M admin/cmake/toolchain.cmake
M admin/cmake/triplets/arm64-windows.cmake
A admin/cmake/triplets/x64-windows.cmake
M admin/test/docker/Dockerfile
A buildsys/docker/oraclelinux8.Dockerfile
A buildsys/docker/ubuntu2404.Dockerfile
A buildsys/toolchain.lock.json
R buildsys/vcpkg/overlay-ports/qtbase/GLIB2-static.patch
R buildsys/vcpkg/overlay-ports/qtbase/allow_outside_prefix.patch
R buildsys/vcpkg/overlay-ports/qtbase/clang-cl_QGADGET_fix.diff
R buildsys/vcpkg/overlay-ports/qtbase/clang-cl_source_location.patch
R buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_install_copyright.cmake
R buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_install_submodule.cmake
R buildsys/vcpkg/overlay-ports/qtbase/cmake/qt_port_details.cmake
R buildsys/vcpkg/overlay-ports/qtbase/config_install.patch
R buildsys/vcpkg/overlay-ports/qtbase/dont_force_cmakecache_latest.patch
R buildsys/vcpkg/overlay-ports/qtbase/env.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix-host-aliasing.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix-libresolv-test.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix-link-lib-discovery.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix-missing-include.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix_cmake_build.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix_deploy_windows.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix_egl.patch
R buildsys/vcpkg/overlay-ports/qtbase/fix_egl_2.patch
R buildsys/vcpkg/overlay-ports/qtbase/framework.patch
R buildsys/vcpkg/overlay-ports/qtbase/harfbuzz.patch
R buildsys/vcpkg/overlay-ports/qtbase/installed_dir.patch
R buildsys/vcpkg/overlay-ports/qtbase/macdeployqt-symlinks.patch
R buildsys/vcpkg/overlay-ports/qtbase/moltenvk.patch
R buildsys/vcpkg/overlay-ports/qtbase/port.data.cmake
R buildsys/vcpkg/overlay-ports/qtbase/portfile.cmake
R buildsys/vcpkg/overlay-ports/qtbase/qmake.debug.bat
R buildsys/vcpkg/overlay-ports/qtbase/qt.conf.in
R buildsys/vcpkg/overlay-ports/qtbase/qtpaths.debug.bat
R buildsys/vcpkg/overlay-ports/qtbase/use-shared-mime-info.patch
R buildsys/vcpkg/overlay-ports/qtbase/use_inotify_on_freebsd.patch
R buildsys/vcpkg/overlay-ports/qtbase/vcpkg.json
R buildsys/vcpkg/overlay-ports/qtbase/windeployqt.debug.bat
R buildsys/vcpkg/overlay-ports/qtbase/xcodebuild-not-installed.patch
A doc/develop/gimp/README.md
A doc/develop/gimp/ultrascan_gimpv3.scm
M doc/manual/CMakeLists.txt
M doc/manual/source/conf.py
M doc/manual/source/start_page-new.rst
M etc/etc_belongs_list.txt
M gui/us_convert_gui.cpp
M gui/us_gui_settings.cpp
M gui/us_model_loader.cpp
M gui/us_plot.cpp
M gui/us_plot.h
M gui/us_report_gui.cpp
M gui/us_report_gui.h
M gui/us_run_details2.cpp
M gui/us_theme.cpp
M gui/us_widgets.cpp
M gui/us_widgets_dialog.cpp
M pkg/macos/README.md
M pkg/macos/preinstall
M programs/CMakeLists.txt
M programs/us/CMakeLists.txt
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_colorgradient/us_colorgradient.cpp
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_remove_ri.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
A programs/us_xpn_viewer/us_xpn_export.h
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M scripts/bootstrap-linux.sh
M scripts/bootstrap-macos.sh
A scripts/build-toolchain.ps1
A scripts/build-toolchain.sh
M scripts/build.ps1
M scripts/build.sh
A scripts/fetch-toolchain.ps1
A scripts/fetch-toolchain.sh
A scripts/prepare-windows-ci.ps1
R scripts/warm-cache.sh
M test-docker.sh
M test/CMakeLists.txt
M test/README
A test/common/us3_file_test_base.h
A test/common/us3_gui_test_main.h
A test/gui/CMakeLists.txt
A test/gui/test_us_editor_gui.cpp
A test/gui/test_us_gui_test_isolation.cpp
M test/utils/CMakeLists.txt
M test/utils/test_us_buffer.cpp
A test/utils/test_us_build_variant.cpp
A test/utils/test_us_dataIO_mutations.cpp
A test/utils/test_us_dataIO_read_contract.cpp
A test/utils/test_us_dataIO_roundtrip.cpp
A test/utils/test_us_dataIO_versions.cpp
M test/utils/test_us_memory.cpp
M test/utils/test_us_model.cpp
M test/utils/test_us_project.cpp
M test/utils/test_us_settings.cpp
A test/utils/test_us_test_environment.cpp
M test/utils/test_us_utils_main.cpp
A test/utils/test_us_xpn_export.cpp
M utils/us_astfem_math.cpp
M utils/us_cfa_data.cpp
M utils/us_cfa_data.h
M utils/us_dataIO.cpp
M utils/us_dataIO.h
M utils/us_defines.h
M utils/us_lamm_astfvm.cpp
M utils/us_memory.cpp
M utils/us_project.cpp
M utils/us_report_gmp.cpp
M utils/us_report_gmp.h
M utils/us_settings.cpp
M utils/us_settings.h
M utils/us_simparms.cpp
M utils/us_time_state.cpp
M utils/us_xpn_data.cpp
M utils/us_xpn_data.h
M vcpkg.json
Log Message:
-----------
Merge branch 'main' into fix/mpi-drain-ready-before-shutdown
Compare: https://github.com/ehb54/ultrascan3/compare/119bd8e26867...0c919d1c5a5b
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