[us-commits] [ehb54/ultrascan3] 86ab97: release/ubuntu/Dockerfile - move to qt 5.15.7, upd...
Borries Demeler
noreply at github.com
Sat May 13 14:22:44 MDT 2023
Branch: refs/heads/demeler-dev
Home: https://github.com/ehb54/ultrascan3
Commit: 86ab977d045ebf7a7167ee20f07ffc1e1fdf48f3
https://github.com/ehb54/ultrascan3/commit/86ab977d045ebf7a7167ee20f07ffc1e1fdf48f3
Author: ehb54 <brookes at uthscsa.edu>
Date: 2022-12-05 (Mon, 05 Dec 2022)
Changed paths:
M admin/release/ubuntu/Dockerfile
Log Message:
-----------
release/ubuntu/Dockerfile - move to qt 5.15.7, updates to properly include us & us_somo manual
Commit: 2661ad51c1ecf34d3a07890af091fcc61bed6951
https://github.com/ehb54/ultrascan3/commit/2661ad51c1ecf34d3a07890af091fcc61bed6951
Author: ehb54 <brookes at uthscsa.edu>
Date: 2022-12-05 (Mon, 05 Dec 2022)
Changed paths:
M admin/release/centos7/Dockerfile
M admin/release/redhat/Dockerfile
Log Message:
-----------
release/redhat8,centos7 dockerfile updates to include manual (us & us-somo)
Commit: 73f18cb9ea6bd9d6ec31bc8a9f5ee75a3c79e8bd
https://github.com/ehb54/ultrascan3/commit/73f18cb9ea6bd9d6ec31bc8a9f5ee75a3c79e8bd
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2022-12-06 (Tue, 06 Dec 2022)
Changed paths:
M gui/us_data_loader.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
Log Message:
-----------
US_Fematch && US_MWL_species_fit -- when run is loaded (such as 'bouyancy' type), call US_DataLoader with the 'etype_filter == 'none' agrument to allow loading edited data profiles for buoyancy type experiments...
Commit: 9a77c3730ed4ebb7d7eb80a7ed354002586ae0ac
https://github.com/ehb54/ultrascan3/commit/9a77c3730ed4ebb7d7eb80a7ed354002586ae0ac
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2022-12-09 (Fri, 09 Dec 2022)
Changed paths:
M gui/us_plot.cpp
M gui/us_plot.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
US_plot Config -- some bugs fixed as to passing plot's global configuraiton (US_GuiSettings) to Plot's Config; started working on exposting plots' conf. to external JSON file ...
Commit: 92ff316365b55beb3e2008c3614b278d8002ac9c
https://github.com/ehb54/ultrascan3/commit/92ff316365b55beb3e2008c3614b278d8002ac9c
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2022-12-14 (Wed, 14 Dec 2022)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h
Log Message:
-----------
debug MSE calculation, add lineedit widgets to show updated MSE, render all 3d MSE images sequentially
Commit: a3006cdc80e5ce0da677d0bc489730d61d48c9ce
https://github.com/ehb54/ultrascan3/commit/a3006cdc80e5ce0da677d0bc489730d61d48c9ce
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2022-12-14 (Wed, 14 Dec 2022)
Changed paths:
M admin/release/centos7/Dockerfile
M admin/release/redhat/Dockerfile
M admin/release/ubuntu/Dockerfile
M gui/us_data_loader.cpp
M gui/us_plot.cpp
M gui/us_plot.h
M programs/us_fematch/us_fematch.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
Mgere remote-tracking branch 'upstream/master'
Commit: 278283c2d119a441d9e421983df4758bcf0a5bfb
https://github.com/ehb54/ultrascan3/commit/278283c2d119a441d9e421983df4758bcf0a5bfb
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2022-12-14 (Wed, 14 Dec 2022)
Changed paths:
M gui/us_plot.cpp
M gui/us_plot.h
Log Message:
-----------
US_plot Config -- upload some basic plot's parameters from an external JSON file ...
Commit: bae401962ecf2f400f23cf54c2777f7707cdc407
https://github.com/ehb54/ultrascan3/commit/bae401962ecf2f400f23cf54c2777f7707cdc407
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2022-12-15 (Thu, 15 Dec 2022)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h
Log Message:
-----------
Merge pull request #52 from samo38/master
debug species fit program MSE 3d-plot
Commit: d64d6e7c9d71bfe48584eb5940ef2505844d33db
https://github.com/ehb54/ultrascan3/commit/d64d6e7c9d71bfe48584eb5940ef2505844d33db
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2022-12-16 (Fri, 16 Dec 2022)
Changed paths:
M programs/us/us.cpp
M programs/us/us_win_data.cpp
Log Message:
-----------
US -- added ABDE Fitter program to the Utilities ...
Commit: fb82d33d4475f59cfac07fb43ffa9a5ea3b84003
https://github.com/ehb54/ultrascan3/commit/fb82d33d4475f59cfac07fb43ffa9a5ea3b84003
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2022-12-19 (Mon, 19 Dec 2022)
Changed paths:
M gui/us_select_item.cpp
M gui/us_select_item.h
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
A programs/us_protocol_dev/us_protocol_dev.pro
A programs/us_protocol_dev/us_protocol_dev_gui.cpp
A programs/us_protocol_dev/us_protocol_dev_gui.h
A programs/us_protocol_dev/us_protocol_dev_main.cpp
Log Message:
-----------
[NEW] US_ProtocolDev programm -- headway on the new program for improvment of exsiting protocol: upload of one of completed autoflow runs (history); passing protocol & AProfile details to 1. EXP.; change only af 8. AProfile part; resubmission with the 'DEV' flag; etc. to be developed ...
Commit: 57c7e836d6f21c99cd46e0abdd73debe8ce087a0
https://github.com/ehb54/ultrascan3/commit/57c7e836d6f21c99cd46e0abdd73debe8ce087a0
Author: Saeed Mortezazadeh <s.mortezazadeh86 at gmail.com>
Date: 2022-12-20 (Tue, 20 Dec 2022)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h
Log Message:
-----------
Add a combo for camera orientation, fix axis labeling
Commit: 588bde38f99fa87ea281cc1fe6cf083e7224a991
https://github.com/ehb54/ultrascan3/commit/588bde38f99fa87ea281cc1fe6cf083e7224a991
Author: Saeed Mortezazadeh <s.mortezazadeh86 at gmail.com>
Date: 2022-12-20 (Tue, 20 Dec 2022)
Changed paths:
M gui/us_plot.cpp
M gui/us_plot.h
M gui/us_select_item.cpp
M gui/us_select_item.h
M programs/us/us.cpp
M programs/us/us_win_data.cpp
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
A programs/us_protocol_dev/us_protocol_dev.pro
A programs/us_protocol_dev/us_protocol_dev_gui.cpp
A programs/us_protocol_dev/us_protocol_dev_gui.h
A programs/us_protocol_dev/us_protocol_dev_main.cpp
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: 31ac94478e3c7d57efd7117b3fde4f4875998e09
https://github.com/ehb54/ultrascan3/commit/31ac94478e3c7d57efd7117b3fde4f4875998e09
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2022-12-20 (Tue, 20 Dec 2022)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
[NEW] US_ProtocolDev programm -- when US_Exp is used by ProtocolDev, assume identiy of the protocol owner, (re)generate protocol list for that user (to properly upload solutuions & compare prtocol names); disable all table but Analysis Profile & Submit portions...
Commit: a1a559aa1c4cf1d93d863749b0a3d5645362ee63
https://github.com/ehb54/ultrascan3/commit/a1a559aa1c4cf1d93d863749b0a3d5645362ee63
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2022-12-20 (Tue, 20 Dec 2022)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
Log Message:
-----------
[NEW] US_ProtocolDev programm -- work on submission of a new autoflow run based on uploaded one from autoflowHistory & whose 8. AProfile section edited; lots of debug stats added ...
Commit: 6e316b628b965ea94d0811da91e9be0ca195c447
https://github.com/ehb54/ultrascan3/commit/6e316b628b965ea94d0811da91e9be0ca195c447
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2022-12-21 (Wed, 21 Dec 2022)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
Log Message:
-----------
GMP | 5. ANALYSIS -- enable smooth scrolling of the triples' treeWidget by dragging scroll bar for easier navigation ...
Commit: 2e97c957e36c443a8734c1aaf5edcf3603868ccd
https://github.com/ehb54/ultrascan3/commit/2e97c957e36c443a8734c1aaf5edcf3603868ccd
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2022-12-21 (Wed, 21 Dec 2022)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | 6. REPORT | GMP REPORTER -- for combined plots, scale images to fit both plot and manually generated legend items...
Commit: 8fd94cf759abf1afa48171498a35dff07da80e9a
https://github.com/ehb54/ultrascan3/commit/8fd94cf759abf1afa48171498a35dff07da80e9a
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2022-12-21 (Wed, 21 Dec 2022)
Changed paths:
M gui/us_select_item.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
Log Message:
-----------
[NEW] US_ProtocolDev programm -- further development, lots of updates, some bugs fixed...
Commit: 6498d47076e663995eba601ed86dd6104174bff3
https://github.com/ehb54/ultrascan3/commit/6498d47076e663995eba601ed86dd6104174bff3
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2022-12-21 (Wed, 21 Dec 2022)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
Log Message:
-----------
[NEW] US_ProtocolDev programm -- further updates & bug fixes...
Commit: f2d50eab5f2dd358ffefceb37678c82f35820ecc
https://github.com/ehb54/ultrascan3/commit/f2d50eab5f2dd358ffefceb37678c82f35820ecc
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2022-12-23 (Fri, 23 Dec 2022)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
[NEW] US_ProtocolDev programm -- further dev.: take care of autoflowIntensity & autoflowStatus positions of completed autoflow runs when creating a new PtocolDevelopment run...
Commit: db1e8cd985f199b5abd699751448a706d4ddd76a
https://github.com/ehb54/ultrascan3/commit/db1e8cd985f199b5abd699751448a706d4ddd76a
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2022-12-23 (Fri, 23 Dec 2022)
Changed paths:
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
Log Message:
-----------
[NEW] US_ProtocolDev programm -- a bug fixed for incorrect re-initializing autoflowHistoty records dialog when all active runc deleted & new experiment is being set up...
Commit: 6acf9c2090bfb1ae4e9b975f968828614f1453ad
https://github.com/ehb54/ultrascan3/commit/6acf9c2090bfb1ae4e9b975f968828614f1453ad
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2022-12-28 (Wed, 28 Dec 2022)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M utils/us_ana_profile.cpp
M utils/us_run_protocol.cpp
Log Message:
-----------
[NEW] US_ProtocolDev programm -- further development: write down a copy of the AProfile loaded from protocol for further comparison; compare multiple fields in 2DSA (& job flow) and PCSA sections if any of those have been changed; TO DO - for Gen panel (Report && ReportItems)...
Commit: 648ced66a6da02f2889c048660ce67a687679ef2
https://github.com/ehb54/ultrascan3/commit/648ced66a6da02f2889c048660ce67a687679ef2
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2022-12-29 (Thu, 29 Dec 2022)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M utils/us_ana_profile.cpp
Log Message:
-----------
[NEW] US_ProtocolDev programm -- careful comparison of multiple Report && ReportItems parameters as well as AProfile's General section parms for protocol development...
Commit: daf7863697c2829dbc19c385026b99fa2201fd78
https://github.com/ehb54/ultrascan3/commit/daf7863697c2829dbc19c385026b99fa2201fd78
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2022-12-29 (Thu, 29 Dec 2022)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
Log Message:
-----------
Add a new checkbox to show the absolute error of species fitting versus the real error
Commit: e4f469b51cd328642828689d75cb8435f31578d0
https://github.com/ehb54/ultrascan3/commit/e4f469b51cd328642828689d75cb8435f31578d0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2022-12-30 (Fri, 30 Dec 2022)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
[NEW] US_ProtocolDev programm -- clean all data (edit profiles, modules, noises) for current run before reinitialization form EDIT stage...
Commit: 3fb39553c7162b08639d35a9a5d7be85e5f12fd0
https://github.com/ehb54/ultrascan3/commit/3fb39553c7162b08639d35a9a5d7be85e5f12fd0
Author: Saeed Mortezazadeh <s.mortezazadeh86 at gmail.com>
Date: 2022-12-31 (Sat, 31 Dec 2022)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h
M programs/us_mwl_species_fit/us_mwl_species_fit.pro
Log Message:
-----------
Add the runs test analysis, plot randomness states of each radial point fitting into a 2d pixel map
Commit: 6bd3f239bc21e958aa28f1ffcfc3230f0b077540
https://github.com/ehb54/ultrascan3/commit/6bd3f239bc21e958aa28f1ffcfc3230f0b077540
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2023-01-03 (Tue, 03 Jan 2023)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h
Log Message:
-----------
rename labels of us_mwl_sf_plot3d
Commit: 518d5da12fc664a4697ac5aaeb2546ee8186eeff
https://github.com/ehb54/ultrascan3/commit/518d5da12fc664a4697ac5aaeb2546ee8186eeff
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2023-01-03 (Tue, 03 Jan 2023)
Changed paths:
M gui/us_select_item.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M utils/us_ana_profile.cpp
M utils/us_run_protocol.cpp
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: bfa487df381f4f528f8fbb47d0a28b4b64b48dca
https://github.com/ehb54/ultrascan3/commit/bfa487df381f4f528f8fbb47d0a28b4b64b48dca
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-01-06 (Fri, 06 Jan 2023)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
[NEW] US_ProtocolDev programm -- bug fixed for cleaning edit profile for re-initialized run related to tabular constraints; ...
Commit: 418e4ab60e1506a02606b6a7a3b868ed2ae03115
https://github.com/ehb54/ultrascan3/commit/418e4ab60e1506a02606b6a7a3b868ed2ae03115
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-01-07 (Sat, 07 Jan 2023)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
[NEW] US_ProtocolDev programm -- debug statement for testing ...
Commit: eb92cb7dbf0f34043afaabffe292fbea3d569703
https://github.com/ehb54/ultrascan3/commit/eb92cb7dbf0f34043afaabffe292fbea3d569703
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-01-07 (Sat, 07 Jan 2023)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
[NEW] US_ProtocolDev programm -- bug fixed for updating protocol_details map while switching to EDIT stage without re-attachement ...
Commit: 768722a953a0c2a3e71d5ada40f12b69a3e52b6e
https://github.com/ehb54/ultrascan3/commit/768722a953a0c2a3e71d5ada40f12b69a3e52b6e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-01-08 (Sun, 08 Jan 2023)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
[NEW] US_ProtocolDev programm -- for combibded (IP+RI) runs, clean data sequentially for IP & RI types before re-initialization...
Commit: 59975524f8466fd6146270bd7fcd3be1e391444c
https://github.com/ehb54/ultrascan3/commit/59975524f8466fd6146270bd7fcd3be1e391444c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-01-08 (Sun, 08 Jan 2023)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
Log Message:
-----------
GMP | FAILED runs -- for combibded (IP+RI) runs marked as FAILED, clean data sequentially for IP & RI types before re-initialization...
Commit: 93f8aec05704e9a58763fddade6baf5e75019873
https://github.com/ehb54/ultrascan3/commit/93f8aec05704e9a58763fddade6baf5e75019873
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-01-10 (Tue, 10 Jan 2023)
Changed paths:
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
Log Message:
-----------
[NEW] US_ProtocolDev programm -- append to the name of combined runs '(combined RI+IP)' in the selection dialog for clarity...
Commit: bd13fb1d8541f974bcd9ca08fb3eb341398af8f2
https://github.com/ehb54/ultrascan3/commit/bd13fb1d8541f974bcd9ca08fb3eb341398af8f2
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-01-10 (Tue, 10 Jan 2023)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
[NEW] US_ProtocolDev programm -- a bug fixed for sequential clearing data for combined runs '(combined RI+IP)' before re-initializaiton...
Commit: da6d77b72762b4a050fc104839d7dc386e641987
https://github.com/ehb54/ultrascan3/commit/da6d77b72762b4a050fc104839d7dc386e641987
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-01-12 (Thu, 12 Jan 2023)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
US_Exp:General -- enforce label name to be lees than 60 characters in length to comply with tabular restricitons; RegExp for alpha-numeric also implemented but commented out as non-alphanumenric charaacters may be used in the lable name & seem to not cause any issues (may be enforced if needed)...
Commit: e5389da2f484b748741ca2861ef73df1bb00bc86
https://github.com/ehb54/ultrascan3/commit/e5389da2f484b748741ca2861ef73df1bb00bc86
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2023-01-17 (Tue, 17 Jan 2023)
Changed paths:
M utils/us_buffer.cpp
Log Message:
-----------
Allow the creation of new buffer components
Commit: 85d75b2c9c4710eb6b3a54000f35eb136978d8ce
https://github.com/ehb54/ultrascan3/commit/85d75b2c9c4710eb6b3a54000f35eb136978d8ce
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2023-01-17 (Tue, 17 Jan 2023)
Changed paths:
M utils/us_buffer.h
Log Message:
-----------
Support creation of buffer components
Commit: d866ab1147fc704ad2ed5d2f7d6a7801b3a50334
https://github.com/ehb54/ultrascan3/commit/d866ab1147fc704ad2ed5d2f7d6a7801b3a50334
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2023-01-17 (Tue, 17 Jan 2023)
Changed paths:
M gui/us_buffer_gui.h
Log Message:
-----------
Update gui for creation of buffer components
Commit: a460f348f631af7a3dea8e78a1ada0a1a44513d1
https://github.com/ehb54/ultrascan3/commit/a460f348f631af7a3dea8e78a1ada0a1a44513d1
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2023-01-17 (Tue, 17 Jan 2023)
Changed paths:
M gui/us_buffer_gui.cpp
Log Message:
-----------
Improve GUI to support Buffer Component Creation
Commit: ffb21b0c95412ae66c10f0ba66f4d7cd4bda8562
https://github.com/ehb54/ultrascan3/commit/ffb21b0c95412ae66c10f0ba66f4d7cd4bda8562
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2023-01-17 (Tue, 17 Jan 2023)
Changed paths:
M gui/us_buffer_gui.cpp
Log Message:
-----------
init everything properly
Commit: 28bc22a8505eea35fe278efdc8eff72a0a719f24
https://github.com/ehb54/ultrascan3/commit/28bc22a8505eea35fe278efdc8eff72a0a719f24
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2023-01-23 (Mon, 23 Jan 2023)
Changed paths:
M gui/us_buffer_gui.cpp
Log Message:
-----------
Dont apply the coefficient correction twice
Commit: a7c13d2ac48b9fbacce2aa7221a151ae49ae8e35
https://github.com/ehb54/ultrascan3/commit/a7c13d2ac48b9fbacce2aa7221a151ae49ae8e35
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-01-23 (Mon, 23 Jan 2023)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_protocol_dev/us_protocol_dev.pro
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
Log Message:
-----------
[NEW] US_ProtocolDev programm -- added ability to reinitialize completed (autoflowHistory) runs from fetching raw data from Optima Postgres && importing to LIMS before EDITING, ANALYSIS etc...
Commit: 2c430f84c51be5a0c1e4f6351b07eb151e61471c
https://github.com/ehb54/ultrascan3/commit/2c430f84c51be5a0c1e4f6351b07eb151e61471c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-01-24 (Tue, 24 Jan 2023)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
Log Message:
-----------
[NEW] US_ProtocolDev programm -- a bug fixed related to switching from ANALYSIS to REPORT stage...
Commit: be51665115824f601c45b1a174a139afa0ac15ed
https://github.com/ehb54/ultrascan3/commit/be51665115824f601c45b1a174a139afa0ac15ed
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-01-24 (Tue, 24 Jan 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP Reporter -- list completed runs based on runname rather than filename...
Commit: f09da93eca53bd120eeeeed56bd1c2e211c5567a
https://github.com/ehb54/ultrascan3/commit/f09da93eca53bd120eeeeed56bd1c2e211c5567a
Author: Saeed Mortezazadeh <s.mortezazadeh86 at gmail.com>
Date: 2023-01-26 (Thu, 26 Jan 2023)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_edit/us_edit.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_protocol_dev/us_protocol_dev.pro
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: bd8901237aed5a3fae810334f15d8a92a82f6a7f
https://github.com/ehb54/ultrascan3/commit/bd8901237aed5a3fae810334f15d8a92a82f6a7f
Author: Saeed Mortezazadeh <s.mortezazadeh86 at gmail.com>
Date: 2023-01-26 (Thu, 26 Jan 2023)
Changed paths:
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
Log Message:
-----------
Rename widget titles
Commit: 30eee4129780469e352643ab3aaff38a69adc487
https://github.com/ehb54/ultrascan3/commit/30eee4129780469e352643ab3aaff38a69adc487
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2023-01-27 (Fri, 27 Jan 2023)
Changed paths:
M gui/us_widgets.cpp
M gui/us_widgets.h
Log Message:
-----------
Add a new class of lineedit that edits texts by taking the maximum number of acceptable characters and regular expression patterns.
Commit: bd883c47745f43675593e819e95bf06880dbe13e
https://github.com/ehb54/ultrascan3/commit/bd883c47745f43675593e819e95bf06880dbe13e
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2023-01-27 (Fri, 27 Jan 2023)
Changed paths:
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.h
Log Message:
-----------
Replaced the lineedit with lineedit_re class to edit the runid
Commit: a0f0a4c356f6efcbb76b4085b12a85ba386ea544
https://github.com/ehb54/ultrascan3/commit/a0f0a4c356f6efcbb76b4085b12a85ba386ea544
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-01-27 (Fri, 27 Jan 2023)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
6. REPORT | GMP Reporter -- a bug fixed related to crash due to cases when run consists of a single triple & there are no ReportItems in APtofile Report; also several other minor bugs fixed...
Commit: e3daf8be0ad7399322ca5c9569811c24f2aaa779
https://github.com/ehb54/ultrascan3/commit/e3daf8be0ad7399322ca5c9569811c24f2aaa779
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-01-27 (Fri, 27 Jan 2023)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
GMP::4. EDIT -- a bug fixed related to crash when attempting to plot different MWL channels each having different #wavelengths && different reference wavelengths as defined in AProfile part of the protocol...
Commit: a17790d39067eb7e0ac3ab38aee7696ef1fd1fd1
https://github.com/ehb54/ultrascan3/commit/a17790d39067eb7e0ac3ab38aee7696ef1fd1fd1
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2023-01-30 (Mon, 30 Jan 2023)
Changed paths:
M gui/us_widgets.cpp
M gui/us_widgets.h
Log Message:
-----------
Add textSet() signal
Commit: 82e24d9bf88e7b5bf368034583de4ffa38d383db
https://github.com/ehb54/ultrascan3/commit/82e24d9bf88e7b5bf368034583de4ffa38d383db
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2023-01-30 (Mon, 30 Jan 2023)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
replace us_lineedit with us_lineedit_re for le_runID2.
Commit: 2e872a8c6c6d1665ccfe5fb54c4e01ab473d823a
https://github.com/ehb54/ultrascan3/commit/2e872a8c6c6d1665ccfe5fb54c4e01ab473d823a
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2023-01-30 (Mon, 30 Jan 2023)
Changed paths:
M gui/us_widgets.cpp
M gui/us_widgets.h
Log Message:
-----------
override setText of QLineEdit to distinguish the updated text and set text
Commit: 9edbcc26971d33980b6dbce90b336cacb7e5a922
https://github.com/ehb54/ultrascan3/commit/9edbcc26971d33980b6dbce90b336cacb7e5a922
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2023-01-30 (Mon, 30 Jan 2023)
Changed paths:
M gui/us_widgets.cpp
M programs/us_convert/us_convert_gui.h
Log Message:
-----------
change the type of le_runID2 to us_lineedit_re
Commit: 22982abccf1c7be527bdc2cf8b36f81004c8cb6c
https://github.com/ehb54/ultrascan3/commit/22982abccf1c7be527bdc2cf8b36f81004c8cb6c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-01-30 (Mon, 30 Jan 2023)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
GMP::Run Manager::Failed Runs -- in cleaning run before re-initializing, I missed reverting status of the dropped triple(s) in every autoflowReport record; this may explain all odditied we saw recently with IMPORT, EDIT etc....
Commit: f1ca682043145f1d88866dc95c27d9f02649ec57
https://github.com/ehb54/ultrascan3/commit/f1ca682043145f1d88866dc95c27d9f02649ec57
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-01-31 (Tue, 31 Jan 2023)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP::1.Experiment -- if protocol unchanged & not re-saved as new before submitting to the Optima, make sure statuses of the dropped triple(s) in every autoflowReport record is set to DEFAULT....
Commit: 89bb554124b72f96d86fe695493990036614a135
https://github.com/ehb54/ultrascan3/commit/89bb554124b72f96d86fe695493990036614a135
Author: Saeed Mortezazadeh <s.mortezazadeh86 at gmail.com>
Date: 2023-01-31 (Tue, 31 Jan 2023)
Changed paths:
M gui/us_widgets.cpp
M gui/us_widgets.h
Log Message:
-----------
renamed to US_LineEdit_RE
Commit: ba37efee318539a788da1faa19aa4cd9078dab3e
https://github.com/ehb54/ultrascan3/commit/ba37efee318539a788da1faa19aa4cd9078dab3e
Author: Saeed Mortezazadeh <s.mortezazadeh86 at gmail.com>
Date: 2023-01-31 (Tue, 31 Jan 2023)
Changed paths:
M gui/us_widgets.cpp
Log Message:
-----------
update _mytext every time calling the setText method
Commit: 77fa92aa3770a7d4a08e09786ae3bfd0797f8c7e
https://github.com/ehb54/ultrascan3/commit/77fa92aa3770a7d4a08e09786ae3bfd0797f8c7e
Author: Saeed Mortezazadeh <s.mortezazadeh86 at gmail.com>
Date: 2023-01-31 (Tue, 31 Jan 2023)
Changed paths:
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.h
M programs/us_pseudo_absorbance/us_remove_ri.cpp
M programs/us_pseudo_absorbance/us_remove_ri.h
Log Message:
-----------
used US_LineEdit_RE in us_pseudo_absorbance program
Commit: bc55e487addc3fb2507ce3de32a4a9dc77668015
https://github.com/ehb54/ultrascan3/commit/bc55e487addc3fb2507ce3de32a4a9dc77668015
Author: Saeed Mortezazadeh <s.mortezazadeh86 at gmail.com>
Date: 2023-01-31 (Tue, 31 Jan 2023)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.h
Log Message:
-----------
used US_LineEdit_RE in us_convert_gui and us_xpn_viewer programs
Commit: b548513823b8386e5f2539c5dbcc649d00385f02
https://github.com/ehb54/ultrascan3/commit/b548513823b8386e5f2539c5dbcc649d00385f02
Author: Saeed Mortezazadeh <s.mortezazadeh86 at gmail.com>
Date: 2023-02-01 (Wed, 01 Feb 2023)
Changed paths:
M gui/us_widgets.cpp
Log Message:
-----------
update _mytext when setText is called and either _maxchars or re doesn't match
Commit: 4524dc33a2329e947e9595fb137e752048e7fb9c
https://github.com/ehb54/ultrascan3/commit/4524dc33a2329e947e9595fb137e752048e7fb9c
Author: Saeed Mortezazadeh <s.mortezazadeh86 at gmail.com>
Date: 2023-02-01 (Wed, 01 Feb 2023)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_convert/us_convert_gui.cpp
M programs/us_edit/us_edit.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: d0d3d1550034a68136ccf76799591cb53e0a0a25
https://github.com/ehb54/ultrascan3/commit/d0d3d1550034a68136ccf76799591cb53e0a0a25
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-02-01 (Wed, 01 Feb 2023)
Changed paths:
M gui/us_widgets.cpp
M gui/us_widgets.h
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.pro
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.h
M programs/us_pseudo_absorbance/us_remove_ri.cpp
M programs/us_pseudo_absorbance/us_remove_ri.h
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.h
Log Message:
-----------
Merge pull request #54 from samo38/master
US_LineEdit_RE
Commit: 7e27562b836404daac487e642a233dc16e89ea83
https://github.com/ehb54/ultrascan3/commit/7e27562b836404daac487e642a233dc16e89ea83
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-01 (Wed, 01 Feb 2023)
Changed paths:
M gui/us_select_item.cpp
Log Message:
-----------
[NEW] US_ProtocoDev -- allow marking/unmarking development runs as faoled in case of 'mechanical' failure, to re-initialize...
Commit: 42d853e39a7163be039b85931ae3a866627b94f5
https://github.com/ehb54/ultrascan3/commit/42d853e39a7163be039b85931ae3a866627b94f5
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-01 (Wed, 01 Feb 2023)
Changed paths:
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
Log Message:
-----------
[NEW] US_ProtocoDev -- [methods for -- ] allow marking/unmarking development runs as faoled in case of 'mechanical' failure, to re-initialize...
Commit: e1a0e9d7a090cb67358c6a547390a0da988cdfd8
https://github.com/ehb54/ultrascan3/commit/e1a0e9d7a090cb67358c6a547390a0da988cdfd8
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2023-02-04 (Sat, 04 Feb 2023)
Changed paths:
M programs/us_rotor_calibration/us_rotor_calibration.cpp
Log Message:
-----------
Merge pull request #55 from ehb54/demeler-dev
Demeler dev
Commit: c8f311a3a9c8b8da53ae02a492dacd8f138288c0
https://github.com/ehb54/ultrascan3/commit/c8f311a3a9c8b8da53ae02a492dacd8f138288c0
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-02-05 (Sun, 05 Feb 2023)
Changed paths:
M gui/us_buffer_gui.cpp
M gui/us_buffer_gui.h
M utils/us_buffer.cpp
M utils/us_buffer.h
Log Message:
-----------
Merge pull request #53 from doluk/buffer-components
Creation of Buffer components
Commit: 2fdbfffd108e43295eee6004bb5abe1a4371d3e8
https://github.com/ehb54/ultrascan3/commit/2fdbfffd108e43295eee6004bb5abe1a4371d3e8
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-07 (Tue, 07 Feb 2023)
Changed paths:
M programs/us_buoyancy/us_buoyancy.cpp
M programs/us_buoyancy/us_buoyancy.h
Log Message:
-----------
ABDE program -- for each triple show also C-plot for all radial pos...
Commit: d8f51be23bfcb871551bb8e5cc43f21c76155b74
https://github.com/ehb54/ultrascan3/commit/d8f51be23bfcb871551bb8e5cc43f21c76155b74
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-07 (Tue, 07 Feb 2023)
Changed paths:
M programs/us_buoyancy/us_buoyancy.cpp
Log Message:
-----------
ABDE program -- [ separate y axis for ]for each triple show also C-plot for all radial pos...
Commit: 3931d54ae51a5643839675fce47cbbbac4c0112c
https://github.com/ehb54/ultrascan3/commit/3931d54ae51a5643839675fce47cbbbac4c0112c
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2023-02-07 (Tue, 07 Feb 2023)
Changed paths:
M gui/us_widgets.h
Log Message:
-----------
add US_GUI_EXTERN to the US_LineEdit_RE class
Commit: 2ed67b139c6e76ad13ecebecabcf8b661bfa9cd5
https://github.com/ehb54/ultrascan3/commit/2ed67b139c6e76ad13ecebecabcf8b661bfa9cd5
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-02-07 (Tue, 07 Feb 2023)
Changed paths:
M gui/us_widgets.h
Log Message:
-----------
Merge pull request #56 from samo38/master
add US_GUI_EXTERN to the US_LineEdit_RE class
Commit: fbdd1a7bf00e50c26a31ec8aded76a03b0cdd429
https://github.com/ehb54/ultrascan3/commit/fbdd1a7bf00e50c26a31ec8aded76a03b0cdd429
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-07 (Tue, 07 Feb 2023)
Changed paths:
M gui/us_plot.cpp
Log Message:
-----------
US_Plot -- bug fix for selecting 'Ellipse' style for curve symbol...
Commit: fd11b5b4ca1efeded7fca741555a26d38af6d762
https://github.com/ehb54/ultrascan3/commit/fd11b5b4ca1efeded7fca741555a26d38af6d762
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-02-08 (Wed, 08 Feb 2023)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Update codeql-analysis.yml
Update actions to v3
Commit: d8a4c43f3a2442da25b32c4636a189f1bf6eae0c
https://github.com/ehb54/ultrascan3/commit/d8a4c43f3a2442da25b32c4636a189f1bf6eae0c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-10 (Fri, 10 Feb 2023)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[NEW] ProtoDev | GMP Reporter -- when initiating a new DEV run, mark parent autoflowHostroy run as 'devRecord:Processed' to distinguish from active DEV runs; show regular GMP & active DEV in US_Protdev selector & in GMP Reporter list to chose from...
Commit: ee0d009b6d881571cfc099e86675418fe93bd967
https://github.com/ehb54/ultrascan3/commit/ee0d009b6d881571cfc099e86675418fe93bd967
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-10 (Fri, 10 Feb 2023)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP Program | [NEW] ProtoDev -- show progress bar when cleaning data for: (1) re-initialization of the run marked as FAILED in GMP (us_comproject) program; and (2) when initiating new DEVelopment run in US_ProtoDev; may take some time especially for cleaning combined and/or MWL data...
Commit: dea9337b445fdf153ee3354100f3d9b09df58b04
https://github.com/ehb54/ultrascan3/commit/dea9337b445fdf153ee3354100f3d9b09df58b04
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-02-13 (Mon, 13 Feb 2023)
Changed paths:
M us_somo/develop/generic.pri
Log Message:
-----------
Update generic.pri
Testing changed LIBS order to resolve reported compile issue.
Commit: 886fe41e10c06786c0397ba58ec65482c1e8ed2e
https://github.com/ehb54/ultrascan3/commit/886fe41e10c06786c0397ba58ec65482c1e8ed2e
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-02-13 (Mon, 13 Feb 2023)
Changed paths:
M us_somo/develop/generic.pri
Log Message:
-----------
Merge pull request #57 from ehb54/ehb54-patch-1
Update generic.pri
Commit: fa0b7e57891cb8012528c8441176c572cff1f6a3
https://github.com/ehb54/ultrascan3/commit/fa0b7e57891cb8012528c8441176c572cff1f6a3
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-15 (Wed, 15 Feb 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M utils/us_tar.cpp
Log Message:
-----------
GMP | 6. REPORT -- for [AUTO] both us_comproject & us_protodev, write .tar.gz of generated .PDF report and associated .txt models; write archive to a new table for later download...
Commit: 323d007960faf56c90a87668921c79d1c165c7c7
https://github.com/ehb54/ultrascan3/commit/323d007960faf56c90a87668921c79d1c165c7c7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-16 (Thu, 16 Feb 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP Reporter -- added options to download .pdf report and related .csv models from DB (those are written only by [AUTO] programs: us_comproject & us_protDev); ...
Commit: 86d9fd16d3e4364b58aae7acd1d09fe479410197
https://github.com/ehb54/ultrascan3/commit/86d9fd16d3e4364b58aae7acd1d09fe479410197
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-16 (Thu, 16 Feb 2023)
Changed paths:
M programs/us/us.cpp
M programs/us/us_win_data.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP Reporter -- change name of the program as it can also view downloaded GMP Reports ...
Commit: 0034ed6af1db97d25d6f5621ab9f94d72ea45dcb
https://github.com/ehb54/ultrascan3/commit/0034ed6af1db97d25d6f5621ab9f94d72ea45dcb
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-17 (Fri, 17 Feb 2023)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
[NEW] US_ProtDev -- Mark newly crated prot_dev run as GMP (it still is gmp.. ) ...
Commit: 79c8b96eaf69b9fbcd16f90314d057712a22722b
https://github.com/ehb54/ultrascan3/commit/79c8b96eaf69b9fbcd16f90314d057712a22722b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-17 (Fri, 17 Feb 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP Reporter -- show locations of the generated (custom or GMP) and/or dpwnloaded form DB .pdf rpeort for user convenience ...
Commit: e9f214a58c74c299d1e76f4b45500dc3c69906af
https://github.com/ehb54/ultrascan3/commit/e9f214a58c74c299d1e76f4b45500dc3c69906af
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-17 (Fri, 17 Feb 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP Reporter -- [a bug fixed for ] show locations of the generated (custom or GMP) and/or dpwnloaded form DB .pdf rpeort for user convenience ...
Commit: 269c60a041cbaaaad2b1b06ecf5e736005c8643c
https://github.com/ehb54/ultrascan3/commit/269c60a041cbaaaad2b1b06ecf5e736005c8643c
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2023-02-17 (Fri, 17 Feb 2023)
Changed paths:
R programs/us_abde_analysis/us_abde_analysis.h
R programs/us_abde_analysis/us_abde_analysis.pro
R programs/us_abde_analysis/us_abde_analysis_main.cpp
Log Message:
-----------
delete previous version of us_abde_analysis
Commit: 5578ec3946d07557fe7d41067685c7330b98f874
https://github.com/ehb54/ultrascan3/commit/5578ec3946d07557fe7d41067685c7330b98f874
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2023-02-17 (Fri, 17 Feb 2023)
Changed paths:
M programs/us_pseudo_absorbance/us_add_refScan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.h
M programs/us_pseudo_absorbance/us_pseudo_absorbance.h
M programs/us_pseudo_absorbance/us_remove_ri.h
Log Message:
-----------
fixed preprocessors
Commit: 068c9f00c1260179baa212899dc81306469cd908
https://github.com/ehb54/ultrascan3/commit/068c9f00c1260179baa212899dc81306469cd908
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2023-02-17 (Fri, 17 Feb 2023)
Changed paths:
M programs/us_buoyancy/us_buoyancy.cpp
M programs/us_buoyancy/us_buoyancy.h
Log Message:
-----------
Add widgetClosed signal and closeEvent slot
Commit: 37247a1d4c8e50d84e6e9e9f91252bcf0c3f679a
https://github.com/ehb54/ultrascan3/commit/37247a1d4c8e50d84e6e9e9f91252bcf0c3f679a
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2023-02-17 (Fri, 17 Feb 2023)
Changed paths:
M programs/us_abde/us_abde.pro
M programs/us_abde/us_abde_main.cpp
A programs/us_abde/us_abde_main.h
A programs/us_abde/us_norm_profile.cpp
A programs/us_abde/us_norm_profile.h
Log Message:
-----------
merged two version of us_ABDE programs into a single one with two tabs accessing to each of them
Commit: 20cdb1d18332a2c36dc6cfb873a0ea3de78c5b15
https://github.com/ehb54/ultrascan3/commit/20cdb1d18332a2c36dc6cfb873a0ea3de78c5b15
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2023-02-17 (Fri, 17 Feb 2023)
Changed paths:
M programs/us/us.cpp
M programs/us/us_win_data.cpp
Log Message:
-----------
delete us_abde_analysis from utility menu and rename 'ABDE fitter' to 'ABDE analysis'
Commit: 49518e83f4434a057756fd308bcdb039111891b3
https://github.com/ehb54/ultrascan3/commit/49518e83f4434a057756fd308bcdb039111891b3
Author: samo38 <s.mortezazadeh86 at gmail.com>
Date: 2023-02-17 (Fri, 17 Feb 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: a7ea67c18c4299c701c6b79e571d2f3777ecb7c7
https://github.com/ehb54/ultrascan3/commit/a7ea67c18c4299c701c6b79e571d2f3777ecb7c7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-17 (Fri, 17 Feb 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP Reporter -- [TEMP testing for ] show locations of the generated (custom or GMP) and/or dpwnloaded form DB .pdf rpeort for user convenience ...
Commit: cc67de4b4a71709b7919979230393d80f112c697
https://github.com/ehb54/ultrascan3/commit/cc67de4b4a71709b7919979230393d80f112c697
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-17 (Fri, 17 Feb 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP Reporter -- [TEMP testing for 2 ] show locations of the generated (custom or GMP) and/or dpwnloaded form DB .pdf rpeort for user convenience ...
Commit: e6f5ef2782890808318f1fc5bd18c5f7323469ad
https://github.com/ehb54/ultrascan3/commit/e6f5ef2782890808318f1fc5bd18c5f7323469ad
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-17 (Fri, 17 Feb 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP Reporter -- [TEMP testing for 3 ] show locations of the generated (custom or GMP) and/or dpwnloaded form DB .pdf rpeort for user convenience ...
Commit: 4261347f3d39cd292ea55628237c33a38df57ee9
https://github.com/ehb54/ultrascan3/commit/4261347f3d39cd292ea55628237c33a38df57ee9
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-17 (Fri, 17 Feb 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP Reporter -- [TEMP testing for 4 ] show locations of the generated (custom or GMP) and/or dpwnloaded form DB .pdf rpeort for user convenience ...
Commit: eb13b80a1b12336f4f0e72a5f476f417d92c65ba
https://github.com/ehb54/ultrascan3/commit/eb13b80a1b12336f4f0e72a5f476f417d92c65ba
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-17 (Fri, 17 Feb 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP Reporter -- [TEMP testing for 5 ] show locations of the generated (custom or GMP) and/or dpwnloaded form DB .pdf rpeort for user convenience ...
Commit: 29ec5432a2ba14f1f5add3a0da85f5bb4559a61a
https://github.com/ehb54/ultrascan3/commit/29ec5432a2ba14f1f5add3a0da85f5bb4559a61a
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-17 (Fri, 17 Feb 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP Reporter -- [TEMP testing for 6 ] show locations of the generated (custom or GMP) and/or dpwnloaded form DB .pdf rpeort for user convenience ...
Commit: 53f10f45be06679cf4e8725a7fd2d8ca09b18ff0
https://github.com/ehb54/ultrascan3/commit/53f10f45be06679cf4e8725a7fd2d8ca09b18ff0
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-02-18 (Sat, 18 Feb 2023)
Changed paths:
M programs/us/us.cpp
M programs/us/us_win_data.cpp
M programs/us_abde/us_abde.pro
M programs/us_abde/us_abde_main.cpp
A programs/us_abde/us_abde_main.h
A programs/us_abde/us_norm_profile.cpp
A programs/us_abde/us_norm_profile.h
R programs/us_abde_analysis/us_abde_analysis.h
R programs/us_abde_analysis/us_abde_analysis.pro
R programs/us_abde_analysis/us_abde_analysis_main.cpp
M programs/us_buoyancy/us_buoyancy.cpp
M programs/us_buoyancy/us_buoyancy.h
M programs/us_pseudo_absorbance/us_add_refScan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.h
M programs/us_pseudo_absorbance/us_pseudo_absorbance.h
M programs/us_pseudo_absorbance/us_remove_ri.h
Log Message:
-----------
Merge pull request #58 from samo38/master
Merged two versions of ABDE analysis into a single program
Commit: 443e0e1fa1201cb30310131d372e026ec6a78928
https://github.com/ehb54/ultrascan3/commit/443e0e1fa1201cb30310131d372e026ec6a78928
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-17 (Fri, 17 Feb 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP Reporter -- [TEMP testing for 7 ] show locations of the generated (custom or GMP) and/or dpwnloaded form DB .pdf rpeort for user convenience ...
Commit: 2e30744cde9de744bd6f7e10fa42ec827c6e6072
https://github.com/ehb54/ultrascan3/commit/2e30744cde9de744bd6f7e10fa42ec827c6e6072
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-17 (Fri, 17 Feb 2023)
Changed paths:
M programs/us/us.cpp
M programs/us/us_win_data.cpp
M programs/us_abde/us_abde.pro
M programs/us_abde/us_abde_main.cpp
A programs/us_abde/us_abde_main.h
A programs/us_abde/us_norm_profile.cpp
A programs/us_abde/us_norm_profile.h
R programs/us_abde_analysis/us_abde_analysis.h
R programs/us_abde_analysis/us_abde_analysis.pro
R programs/us_abde_analysis/us_abde_analysis_main.cpp
M programs/us_buoyancy/us_buoyancy.cpp
M programs/us_buoyancy/us_buoyancy.h
M programs/us_pseudo_absorbance/us_add_refScan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.h
M programs/us_pseudo_absorbance/us_pseudo_absorbance.h
M programs/us_pseudo_absorbance/us_remove_ri.h
Log Message:
-----------
Merge branch 'master' of github.com:ehb54/ultrascan3
Commit: 8a59a71f8b35996234b1fbeef553c5f2fee82503
https://github.com/ehb54/ultrascan3/commit/8a59a71f8b35996234b1fbeef553c5f2fee82503
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-17 (Fri, 17 Feb 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP Reporter -- [TEMP testing for 8 ] show locations of the generated (custom or GMP) and/or dpwnloaded form DB .pdf rpeort for user convenience ...
Commit: 5ba6577582b8c9a8c2b0fa370f4cd1b1d0041ee2
https://github.com/ehb54/ultrascan3/commit/5ba6577582b8c9a8c2b0fa370f4cd1b1d0041ee2
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-17 (Fri, 17 Feb 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP Reporter -- [TEMP testing for 9 ] show locations of the generated (custom or GMP) and/or dpwnloaded form DB .pdf rpeort for user convenience ...
Commit: 935e1c3700d9d7d9cae1ef71eaecb19d1c2f5888
https://github.com/ehb54/ultrascan3/commit/935e1c3700d9d7d9cae1ef71eaecb19d1c2f5888
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-17 (Fri, 17 Feb 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP Reporter -- [TEMP testing for 10 ] show locations of the generated (custom or GMP) and/or dpwnloaded form DB .pdf rpeort for user convenience ...
Commit: 5b818abc245f026dd763737fcc5caca69bcbc780
https://github.com/ehb54/ultrascan3/commit/5b818abc245f026dd763737fcc5caca69bcbc780
Author: ehb54 <brookes at uthscsa.edu>
Date: 2023-02-18 (Sat, 18 Feb 2023)
Changed paths:
M programs/us/us_win_data.cpp
Log Message:
-----------
us_win_data.cpp - fix for menu bug introduced in latest ABDE update
Commit: 050b6fab079ccad3835bbfc706e5d02aaf531fc4
https://github.com/ehb54/ultrascan3/commit/050b6fab079ccad3835bbfc706e5d02aaf531fc4
Author: ehb54 <brookes at uthscsa.edu>
Date: 2023-02-19 (Sun, 19 Feb 2023)
Changed paths:
M admin/release/buildpkg.pl
M admin/release/redhat/Dockerfile
M admin/release/ubuntu/Dockerfile
Log Message:
-----------
build linux packages .. updated to qt 5.15.8, redhat to 8.7
Commit: c805d9f82d97acbb7fede2d547b33fddf1e67afb
https://github.com/ehb54/ultrascan3/commit/c805d9f82d97acbb7fede2d547b33fddf1e67afb
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-20 (Mon, 20 Feb 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP Reporter | 6. REPORT in GMP & US_ProtDev -- bug fixed for jumping to Run Manager from REPORT stage; better representaiton of the runName in 6. RPEORT, especcially for PRotDev...
Commit: f03fd618a7f7e8c089bbe00e671c65d5585166e6
https://github.com/ehb54/ultrascan3/commit/f03fd618a7f7e8c089bbe00e671c65d5585166e6
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-20 (Mon, 20 Feb 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
6. REPORT in GMP & US_ProtDev -- lock writing GMP Report to DB to one session only...
Commit: a21e5de6ba63ca36461484c0abba85d6ab92c686
https://github.com/ehb54/ultrascan3/commit/a21e5de6ba63ca36461484c0abba85d6ab92c686
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-22 (Wed, 22 Feb 2023)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
5. ANALYSIS && 6. REPORT in GMP & US_ProtDev -- add information on when meniscus position for each channel was accepted as best fit or modified (only in FITMEN_MANUAL) for future audit trail...
Commit: 22923d60ccd2518b6339d7f6d99f6fcfba47effa
https://github.com/ehb54/ultrascan3/commit/22923d60ccd2518b6339d7f6d99f6fcfba47effa
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-22 (Wed, 22 Feb 2023)
Changed paths:
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
GMP: Debugs for testing..
Commit: 7a2a6552c4c6871dc1f28c18249f69938927133e
https://github.com/ehb54/ultrascan3/commit/7a2a6552c4c6871dc1f28c18249f69938927133e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-22 (Wed, 22 Feb 2023)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
GMP: 1. EXP -- bug fixed for settign proper #of channels with certain optical systems..
Commit: 79dec8818c5e1aef2fc112951df6b8018b7a2374
https://github.com/ehb54/ultrascan3/commit/79dec8818c5e1aef2fc112951df6b8018b7a2374
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-22 (Wed, 22 Feb 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP, US_ProtDev: 6. REPORT -- for [AUTO] GMP programs, after successful report generation & saving .tar to DB, update 'reporting' filed of autoflowStatus with person info && timestamp; will be needed for audir trail...
Commit: f806eed1a0b8d156a3b318b43078d751e26d4fee
https://github.com/ehb54/ultrascan3/commit/f806eed1a0b8d156a3b318b43078d751e26d4fee
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-02-28 (Tue, 28 Feb 2023)
Changed paths:
M programs/us_buoyancy/us_buoyancy.cpp
Log Message:
-----------
US_ABDE [AUTO]-- added corrected and uncorrected (for centerpiece shape) measures for total OD in the peak reports...
Commit: 3b957bb5bcc2c3141a55a6f73089a837d0741805
https://github.com/ehb54/ultrascan3/commit/3b957bb5bcc2c3141a55a6f73089a837d0741805
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-03-03 (Fri, 03 Mar 2023)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
Log Message:
-----------
GMP | US_ProtDev: 3. IMPORT -- a bug fixed for channels' solution names & descriptions for cases when combined RI+IP runs have arbitrary sequence of optical systems selections among different channels; needs further testing...
Commit: 6016515853055befd6067c0ae267363bd0eaea72
https://github.com/ehb54/ultrascan3/commit/6016515853055befd6067c0ae267363bd0eaea72
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2023-03-05 (Sun, 05 Mar 2023)
Changed paths:
M gui/us_minimize.cpp
Log Message:
-----------
Merge pull request #59 from ehb54/demeler-dev
Updated fitting initialization values for more accurate fits
Commit: 6df6e34a8a5b0938a3d2fbb009c926a353f9d8e9
https://github.com/ehb54/ultrascan3/commit/6df6e34a8a5b0938a3d2fbb009c926a353f9d8e9
Author: ehb54 <brookes at uthscsa.edu>
Date: 2023-03-09 (Thu, 09 Mar 2023)
Changed paths:
M us_somo/etc/somo.config.new
M us_somo/etc/somo.defaults.new
M us_somo/etc/somo.saxs_atoms.new
A us_somo/somo/doc/manual/somo/Rg_from_Pr.png
A us_somo/somo/doc/manual/somo/somo-SAS_Miscellaneous_Options_new.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_Load_CSV1_new1.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_Load_CSV1_new3.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_Load_Plotted_new1.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_Load_Plotted_new2.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS1_new1.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS1_new2.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS1_new3.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS_graph_new1.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS_p_r_no_SD.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS_p_r_no_SD_percent_diff.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS_p_r_no_SD_res_div_SD.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS_p_r_no_SD_res_only.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS_p_r_no_SD_results_with_contributing.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS_p_r_with_SD_percent_diff.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS_p_r_with_SD_res_div_SD.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS_p_r_with_SD_res_only.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS_p_r_with_SD_results_with_contributing.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS_progwindow_new1.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_Pr_new.png
M us_somo/somo/doc/manual/somo/somo-SAXS_SANS_Pr_panel_new.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_Pr_progress_new.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_SAXS_Load_CSV_new1.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_SAXS_Load_CSV_new2.png
M us_somo/somo/doc/manual/somo/somo-SAXS_SANS_Scaling_residuals_new.png
M us_somo/somo/doc/manual/somo/somo-SAXS_SANS_load-1E8L_WAXSiS_models.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_load_plotted_1E8L_WAXSiS_models1.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_new1.png
A us_somo/somo/doc/manual/somo/somo-advanced_conf_new.png
A us_somo/somo/doc/manual/somo/somo-misc1New.png
M us_somo/somo/doc/manual/somo/somo_add_saxs.html
M us_somo/somo/doc/manual/somo/somo_advanced_config.html
M us_somo/somo/doc/manual/somo/somo_batch.html
A us_somo/somo/doc/manual/somo/somo_clear_directories_alert.png
M us_somo/somo/doc/manual/somo/somo_misc.html
M us_somo/somo/doc/manual/somo/somo_saxs.html
M us_somo/somo/doc/manual/somo/somo_saxs_load_csv.html
M us_somo/somo/doc/manual/somo/somo_saxs_options.html
A us_somo/somo/doc/manual/somo/somo_saxs_residuals.html
Log Message:
-----------
*beta* somo doc etc updates
Commit: af41970d3cd102ca59a10b4af57cd58fc8f478eb
https://github.com/ehb54/ultrascan3/commit/af41970d3cd102ca59a10b4af57cd58fc8f478eb
Author: ehb54 <brookes at uthscsa.edu>
Date: 2023-03-09 (Thu, 09 Mar 2023)
Changed paths:
M us_somo/develop/generic.pri
M us_somo/develop/include/us_hydrodyn.h
M us_somo/develop/include/us_hydrodyn_advanced_config.h
M us_somo/develop/include/us_hydrodyn_batch.h
M us_somo/develop/include/us_hydrodyn_misc.h
M us_somo/develop/include/us_hydrodyn_pdbdefs.h
M us_somo/develop/include/us_hydrodyn_sas_options_misc.h
M us_somo/develop/include/us_hydrodyn_saxs.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc_options.h
M us_somo/develop/include/us_hydrodyn_saxs_iqq_load_csv.h
M us_somo/develop/include/us_hydrodyn_saxs_load_csv.h
M us_somo/develop/include/us_hydrodyn_saxs_residuals.h
M us_somo/develop/include/us_hydrodyn_zeno.h
M us_somo/develop/include/us_mqt.h
M us_somo/develop/include/us_saxs_util.h
M us_somo/develop/include/us_vector.h
M us_somo/develop/src/us_hydrodyn.cpp
M us_somo/develop/src/us_hydrodyn_addatom.cpp
M us_somo/develop/src/us_hydrodyn_addhybrid.cpp
M us_somo/develop/src/us_hydrodyn_addresidue.cpp
M us_somo/develop/src/us_hydrodyn_addsaxs.cpp
M us_somo/develop/src/us_hydrodyn_advanced_config.cpp
M us_somo/develop/src/us_hydrodyn_batch.cpp
M us_somo/develop/src/us_hydrodyn_beads.cpp
M us_somo/develop/src/us_hydrodyn_core.cpp
M us_somo/develop/src/us_hydrodyn_grpy.cpp
M us_somo/develop/src/us_hydrodyn_load.cpp
M us_somo/develop/src/us_hydrodyn_misc.cpp
M us_somo/develop/src/us_hydrodyn_other.cpp
M us_somo/develop/src/us_hydrodyn_results.cpp
M us_somo/develop/src/us_hydrodyn_sas_options_misc.cpp
M us_somo/develop/src/us_hydrodyn_saxs.cpp
M us_somo/develop/src/us_hydrodyn_saxs_buffer.cpp
M us_somo/develop/src/us_hydrodyn_saxs_conc.cpp
M us_somo/develop/src/us_hydrodyn_saxs_external.cpp
M us_somo/develop/src/us_hydrodyn_saxs_fits.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_fit.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_gg.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_gui.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_wheel.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_options.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_plots.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_util.cpp
M us_somo/develop/src/us_hydrodyn_saxs_ift.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_bead_model.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_load_csv.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_sh.cpp
M us_somo/develop/src/us_hydrodyn_saxs_load_csv.cpp
M us_somo/develop/src/us_hydrodyn_saxs_loads.cpp
M us_somo/develop/src/us_hydrodyn_saxs_plots.cpp
M us_somo/develop/src/us_hydrodyn_saxs_pr.cpp
M us_somo/develop/src/us_hydrodyn_saxs_residuals.cpp
M us_somo/develop/src/us_hydrodyn_script.cpp
M us_somo/develop/src/us_hydrodyn_settings.cpp
M us_somo/develop/src/us_hydrodyn_util.cpp
M us_somo/develop/src/us_hydrodyn_zeno.cpp
M us_somo/develop/src/us_mqt.cpp
M us_somo/develop/src/us_saxs_util_iqq_pdb.cpp
M us_somo/develop/src/us_saxs_util_pm.cpp
M us_somo/develop/src/us_saxs_util_static.cpp
M us_somo/develop/src/us_vector.cpp
M us_somo/develop/us3_hydrodyn/main.cpp
Log Message:
-----------
*beta* somo updates
Commit: 434a670988fce6f2a4196e3a0198dc4ff8438c52
https://github.com/ehb54/ultrascan3/commit/434a670988fce6f2a4196e3a0198dc4ff8438c52
Author: ehb54 <brookes at uthscsa.edu>
Date: 2023-03-09 (Thu, 09 Mar 2023)
Changed paths:
M us_somo/somo/doc/manual/somo/somo_saxs_load_csv.html
Log Message:
-----------
*beta* doc typo fix
Commit: 6c8506eaded93f4f60cab28b1e379ae28d4e4a4b
https://github.com/ehb54/ultrascan3/commit/6c8506eaded93f4f60cab28b1e379ae28d4e4a4b
Author: ehb54 <brookes at uthscsa.edu>
Date: 2023-03-12 (Sun, 12 Mar 2023)
Changed paths:
M us_somo/somo/doc/manual/somo/somo_saxs_load_csv.html
Log Message:
-----------
*beta* minor doc update
Commit: 20918da275b0ad479738a8540320198cbca61418
https://github.com/ehb54/ultrascan3/commit/20918da275b0ad479738a8540320198cbca61418
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-03-12 (Sun, 12 Mar 2023)
Changed paths:
M us_somo/develop/generic.pri
M us_somo/develop/include/us_hydrodyn.h
M us_somo/develop/include/us_hydrodyn_advanced_config.h
M us_somo/develop/include/us_hydrodyn_batch.h
M us_somo/develop/include/us_hydrodyn_misc.h
M us_somo/develop/include/us_hydrodyn_pdbdefs.h
M us_somo/develop/include/us_hydrodyn_sas_options_misc.h
M us_somo/develop/include/us_hydrodyn_saxs.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc_options.h
M us_somo/develop/include/us_hydrodyn_saxs_iqq_load_csv.h
M us_somo/develop/include/us_hydrodyn_saxs_load_csv.h
M us_somo/develop/include/us_hydrodyn_saxs_residuals.h
M us_somo/develop/include/us_hydrodyn_zeno.h
M us_somo/develop/include/us_mqt.h
M us_somo/develop/include/us_saxs_util.h
M us_somo/develop/include/us_vector.h
M us_somo/develop/src/us_hydrodyn.cpp
M us_somo/develop/src/us_hydrodyn_addatom.cpp
M us_somo/develop/src/us_hydrodyn_addhybrid.cpp
M us_somo/develop/src/us_hydrodyn_addresidue.cpp
M us_somo/develop/src/us_hydrodyn_addsaxs.cpp
M us_somo/develop/src/us_hydrodyn_advanced_config.cpp
M us_somo/develop/src/us_hydrodyn_batch.cpp
M us_somo/develop/src/us_hydrodyn_beads.cpp
M us_somo/develop/src/us_hydrodyn_core.cpp
M us_somo/develop/src/us_hydrodyn_grpy.cpp
M us_somo/develop/src/us_hydrodyn_load.cpp
M us_somo/develop/src/us_hydrodyn_misc.cpp
M us_somo/develop/src/us_hydrodyn_other.cpp
M us_somo/develop/src/us_hydrodyn_results.cpp
M us_somo/develop/src/us_hydrodyn_sas_options_misc.cpp
M us_somo/develop/src/us_hydrodyn_saxs.cpp
M us_somo/develop/src/us_hydrodyn_saxs_buffer.cpp
M us_somo/develop/src/us_hydrodyn_saxs_conc.cpp
M us_somo/develop/src/us_hydrodyn_saxs_external.cpp
M us_somo/develop/src/us_hydrodyn_saxs_fits.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_fit.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_gg.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_gui.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_wheel.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_options.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_plots.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_util.cpp
M us_somo/develop/src/us_hydrodyn_saxs_ift.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_bead_model.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_load_csv.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_sh.cpp
M us_somo/develop/src/us_hydrodyn_saxs_load_csv.cpp
M us_somo/develop/src/us_hydrodyn_saxs_loads.cpp
M us_somo/develop/src/us_hydrodyn_saxs_plots.cpp
M us_somo/develop/src/us_hydrodyn_saxs_pr.cpp
M us_somo/develop/src/us_hydrodyn_saxs_residuals.cpp
M us_somo/develop/src/us_hydrodyn_script.cpp
M us_somo/develop/src/us_hydrodyn_settings.cpp
M us_somo/develop/src/us_hydrodyn_util.cpp
M us_somo/develop/src/us_hydrodyn_zeno.cpp
M us_somo/develop/src/us_mqt.cpp
M us_somo/develop/src/us_saxs_util_iqq_pdb.cpp
M us_somo/develop/src/us_saxs_util_pm.cpp
M us_somo/develop/src/us_saxs_util_static.cpp
M us_somo/develop/src/us_vector.cpp
M us_somo/develop/us3_hydrodyn/main.cpp
M us_somo/etc/somo.config.new
M us_somo/etc/somo.defaults.new
M us_somo/etc/somo.saxs_atoms.new
A us_somo/somo/doc/manual/somo/Rg_from_Pr.png
A us_somo/somo/doc/manual/somo/somo-SAS_Miscellaneous_Options_new.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_Load_CSV1_new1.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_Load_CSV1_new3.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_Load_Plotted_new1.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_Load_Plotted_new2.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS1_new1.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS1_new2.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS1_new3.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS_graph_new1.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS_p_r_no_SD.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS_p_r_no_SD_percent_diff.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS_p_r_no_SD_res_div_SD.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS_p_r_no_SD_res_only.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS_p_r_no_SD_results_with_contributing.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS_p_r_with_SD_percent_diff.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS_p_r_with_SD_res_div_SD.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS_p_r_with_SD_res_only.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS_p_r_with_SD_results_with_contributing.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_NNLS_progwindow_new1.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_Pr_new.png
M us_somo/somo/doc/manual/somo/somo-SAXS_SANS_Pr_panel_new.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_Pr_progress_new.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_SAXS_Load_CSV_new1.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_SAXS_Load_CSV_new2.png
M us_somo/somo/doc/manual/somo/somo-SAXS_SANS_Scaling_residuals_new.png
M us_somo/somo/doc/manual/somo/somo-SAXS_SANS_load-1E8L_WAXSiS_models.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_load_plotted_1E8L_WAXSiS_models1.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_new1.png
A us_somo/somo/doc/manual/somo/somo-advanced_conf_new.png
A us_somo/somo/doc/manual/somo/somo-misc1New.png
M us_somo/somo/doc/manual/somo/somo_add_saxs.html
M us_somo/somo/doc/manual/somo/somo_advanced_config.html
M us_somo/somo/doc/manual/somo/somo_batch.html
A us_somo/somo/doc/manual/somo/somo_clear_directories_alert.png
M us_somo/somo/doc/manual/somo/somo_misc.html
M us_somo/somo/doc/manual/somo/somo_saxs.html
M us_somo/somo/doc/manual/somo/somo_saxs_load_csv.html
M us_somo/somo/doc/manual/somo/somo_saxs_options.html
A us_somo/somo/doc/manual/somo/somo_saxs_residuals.html
Log Message:
-----------
Merge pull request #60 from ehb54/release-beta
SOMO Release beta to master updates
Commit: 1caf8d201c67e18b6a3f25d509b80371d10f7467
https://github.com/ehb54/ultrascan3/commit/1caf8d201c67e18b6a3f25d509b80371d10f7467
Author: ehb54 <brookes at uthscsa.edu>
Date: 2023-03-16 (Thu, 16 Mar 2023)
Changed paths:
M utils/us_crypto.cpp
Log Message:
-----------
us_crypto.cpp fix for long user passwords
Commit: 3d2dc3ab134900e4439f045a8ab7cb698b906bba
https://github.com/ehb54/ultrascan3/commit/3d2dc3ab134900e4439f045a8ab7cb698b906bba
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-03-23 (Thu, 23 Mar 2023)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP: 6.REPORT | GMP REPORTER -- add information on the dropped triples for each optical system (if any) to the USER INTERACTIONS poriton of the report; will also be needed for audit trail...
Commit: e155212788b129e0924ef97f34e2f3efa9fd71a9
https://github.com/ehb54/ultrascan3/commit/e155212788b129e0924ef97f34e2f3efa9fd71a9
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-03-23 (Thu, 23 Mar 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP REPORTER -- allow to select all run for admin users; if level <3, generate list comprised of only user's own autoflow history runs; also, allow operator prescribed in the autoflow record to access these runs [may be reverted if needed..]...
Commit: b77d829938461a5435967f4376686d7c1ea8288c
https://github.com/ehb54/ultrascan3/commit/b77d829938461a5435967f4376686d7c1ea8288c
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-03-25 (Sat, 25 Mar 2023)
Changed paths:
M gui/us_plot.cpp
M gui/us_widgets_dialog.cpp
M gui/us_widgets_dialog.h
Log Message:
-----------
The problem with adjusting the parent QwtPlot palette within the child widget, specifically when altering the background color of the frame, has been resolved.
Commit: fb472f19c1e5d3af93a2ac2f45daae3d916fe407
https://github.com/ehb54/ultrascan3/commit/fb472f19c1e5d3af93a2ac2f45daae3d916fe407
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-03-25 (Sat, 25 Mar 2023)
Changed paths:
M gui/us_plot.cpp
M gui/us_plot.h
Log Message:
-----------
Add title, frame, canvas, axis, grid inforamtion to the plot configuration json
Commit: 1b3fb6e006914f0b481daa0b920acada0349fedb
https://github.com/ehb54/ultrascan3/commit/1b3fb6e006914f0b481daa0b920acada0349fedb
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-03-26 (Sun, 26 Mar 2023)
Changed paths:
M gui/us_plot.cpp
M gui/us_plot.h
Log Message:
-----------
add save plot config
Commit: 24f79183d9b89a0164d7281ecf56465e43ba010e
https://github.com/ehb54/ultrascan3/commit/24f79183d9b89a0164d7281ecf56465e43ba010e
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-03-27 (Mon, 27 Mar 2023)
Changed paths:
M gui/us_plot.cpp
Log Message:
-----------
fixed issue with the initializtion of axis scale with autoscale
Commit: 363bacd81569aa1779cd23ea130af7e04654acbe
https://github.com/ehb54/ultrascan3/commit/363bacd81569aa1779cd23ea130af7e04654acbe
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-03-27 (Mon, 27 Mar 2023)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: c21a163c36b8ffc741a1795a937e1f60e1b6afac
https://github.com/ehb54/ultrascan3/commit/c21a163c36b8ffc741a1795a937e1f60e1b6afac
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-03-27 (Mon, 27 Mar 2023)
Changed paths:
M gui/us_plot.cpp
M gui/us_plot.h
M gui/us_widgets_dialog.cpp
M gui/us_widgets_dialog.h
Log Message:
-----------
Merge pull request #61 from samo38/master
edit us_plot
Commit: 37f34bc4b50f41697f48dad7285730f49f1bc30f
https://github.com/ehb54/ultrascan3/commit/37f34bc4b50f41697f48dad7285730f49f1bc30f
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-03-28 (Tue, 28 Mar 2023)
Changed paths:
M gui/us_plot.cpp
Log Message:
-----------
replace setContentsMargins with setStyleSheet to change the plot's border margin
Commit: 984517adf76a45e3c750379c3dd610edd8651a95
https://github.com/ehb54/ultrascan3/commit/984517adf76a45e3c750379c3dd610edd8651a95
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-03-28 (Tue, 28 Mar 2023)
Changed paths:
M programs/us_ddist_combine/us_ddist_combine.cpp
Log Message:
-----------
explicitly set NoSymbol for plotting distributions
Commit: a72249713faa9193ae5181cddeedfaacd020f2f1
https://github.com/ehb54/ultrascan3/commit/a72249713faa9193ae5181cddeedfaacd020f2f1
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-03-28 (Tue, 28 Mar 2023)
Changed paths:
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: c3e4f28fa6948af4fd1e05a02f9d5b6c8087dcfd
https://github.com/ehb54/ultrascan3/commit/c3e4f28fa6948af4fd1e05a02f9d5b6c8087dcfd
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-03-30 (Thu, 30 Mar 2023)
Changed paths:
M gui/us_investigator.cpp
M gui/us_investigator.h
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M utils/us_protocol_util.cpp
M utils/us_protocol_util.h
Log Message:
-----------
GMP | DA R&D -- user-level 2 can now create or upload & modify && submit his own protocols ...
Commit: ed0505d8b19ae4ed58b431da1bf308ce0b740856
https://github.com/ehb54/ultrascan3/commit/ed0505d8b19ae4ed58b431da1bf308ce0b740856
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-03-30 (Thu, 30 Mar 2023)
Changed paths:
M programs/us/us.cpp
Log Message:
-----------
Main US program -- each launch check & update user-level as set in DB...
Commit: d8f28ba875b92ab9e73567475f0b5f0a35fa27aa
https://github.com/ehb54/ultrascan3/commit/d8f28ba875b92ab9e73567475f0b5f0a35fa27aa
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-03-31 (Fri, 31 Mar 2023)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | DA R&D | GMP Reporter -- exclude operator (as defined on 1. EXP.) from the list of low-level users who can attach to GMP | DA runs, or deal with GMP reports; will conflict with runs' permissions...
Commit: 8f40a6bf8ea3000412ede491ff3f05370e7407da
https://github.com/ehb54/ultrascan3/commit/8f40a6bf8ea3000412ede491ff3f05370e7407da
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-04-03 (Mon, 03 Apr 2023)
Changed paths:
M gui/us_investigator.cpp
M gui/us_investigator.h
M programs/us/us.cpp
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M utils/us_protocol_util.cpp
M utils/us_protocol_util.h
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: d794e4273c42d14025c4483169156b7e404da5de
https://github.com/ehb54/ultrascan3/commit/d794e4273c42d14025c4483169156b7e404da5de
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-04-04 (Tue, 04 Apr 2023)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | GMP Reporter -- small bug fixed in GMP Reporter; add explicit check & update of the user=level at the very beginning of GMP program opening (in addition to in the US_Expereiment , whcih is also needed if UL changed dynamically and program opened)...
Commit: 710e70ab517574453f6a6d8da5bd3bcd72b380c7
https://github.com/ehb54/ultrascan3/commit/710e70ab517574453f6a6d8da5bd3bcd72b380c7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-04-05 (Wed, 05 Apr 2023)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP | GMP Reporter -- if some triples are dropped at 3. IMPORT, inform user after protocol/aprofile processed in the dialog of missed models; also include this info in the report as well...
Commit: 389232b61f1b3b710ace00434a9ce9846191310a
https://github.com/ehb54/ultrascan3/commit/389232b61f1b3b710ace00434a9ce9846191310a
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-04-05 (Wed, 05 Apr 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | GMP Reporter -- include time of generation...
Commit: 83451a51084ff258e9a2df31976a2a2658dea609
https://github.com/ehb54/ultrascan3/commit/83451a51084ff258e9a2df31976a2a2658dea609
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-04-10 (Mon, 10 Apr 2023)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.h
Log Message:
-----------
GMP | 2. LIVE_UPDATE -- keep track on user actions on remotely skipping stage &|| stopping machine; depending on actions, create new || create & update autoflowStatus record for the run reflecting user info & timestamp; pass ID to 3. IMPORT...
Commit: 6ea57782f836c61935bb2ffa8637a34b73a353b2
https://github.com/ehb54/ultrascan3/commit/6ea57782f836c61935bb2ffa8637a34b73a353b2
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-04-10 (Mon, 10 Apr 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
GMP | 6. REPORT | GMP Reporter -- include informaiton on remote operations at 2. LIVE_UPDATE (SKIP, STOP, or both) in 'User Intareacitons' of GMP Report...
Commit: dbb0b8a2f1ad50e75cc70f34e567cdb85c5e27e5
https://github.com/ehb54/ultrascan3/commit/dbb0b8a2f1ad50e75cc70f34e567cdb85c5e27e5
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2023-04-11 (Tue, 11 Apr 2023)
Changed paths:
A make_all.pro
Log Message:
-----------
Create make_all.pro
Commit: 25403264e4f6ff138c57e120fca8fc0a2bfd7e6c
https://github.com/ehb54/ultrascan3/commit/25403264e4f6ff138c57e120fca8fc0a2bfd7e6c
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2023-04-11 (Tue, 11 Apr 2023)
Changed paths:
M library.pri
Log Message:
-----------
Simplify library.pro and add DLLDESTDIR
Commit: fbc3abd2bf216a10063da46a4aadf02d5163171e
https://github.com/ehb54/ultrascan3/commit/fbc3abd2bf216a10063da46a4aadf02d5163171e
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2023-04-11 (Tue, 11 Apr 2023)
Changed paths:
R programs/us_export_legacy/us_export.pro
A programs/us_export_legacy/us_export_legacy.pro
Log Message:
-----------
Rename us_export.pro to us_export_legacy.pro
Keep consistent naming
Commit: 2237b94c2aa40242d64a108a5126c04bcffaa522
https://github.com/ehb54/ultrascan3/commit/2237b94c2aa40242d64a108a5126c04bcffaa522
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2023-04-11 (Tue, 11 Apr 2023)
Changed paths:
R programs/us_model_gui/modelgui.pro
A programs/us_model_gui/us_model_gui.pro
Log Message:
-----------
Rename modelgui.pro to us_model_gui.pro
Ensure correct naming
Commit: 6bfe3fd94ffa98000e1c71896b3b959ced2ac3c3
https://github.com/ehb54/ultrascan3/commit/6bfe3fd94ffa98000e1c71896b3b959ced2ac3c3
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-04-11 (Tue, 11 Apr 2023)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.h
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: 273d31bde8734c5a39f6cd440bcf87ed5b290618
https://github.com/ehb54/ultrascan3/commit/273d31bde8734c5a39f6cd440bcf87ed5b290618
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-04-13 (Thu, 13 Apr 2023)
Changed paths:
M library.pri
A make_all.pro
R programs/us_export_legacy/us_export.pro
A programs/us_export_legacy/us_export_legacy.pro
R programs/us_model_gui/modelgui.pro
A programs/us_model_gui/us_model_gui.pro
Log Message:
-----------
Merge pull request #64 from doluk/new_build_system
New build system
Commit: 28e736ac4788d0538078bdd05f91d33f05cec660
https://github.com/ehb54/ultrascan3/commit/28e736ac4788d0538078bdd05f91d33f05cec660
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-04-13 (Thu, 13 Apr 2023)
Changed paths:
A programs/us_mwl_db_query/us_mwl_db_query.pro
A programs/us_mwl_db_query/us_mwl_pltctrl.cpp
A programs/us_mwl_db_query/us_mwl_pltctrl.h
A programs/us_mwl_db_query/us_mwl_run.cpp
A programs/us_mwl_db_query/us_mwl_run.h
A programs/us_mwl_db_query/us_mwlr_viewer.cpp
A programs/us_mwl_db_query/us_mwlr_viewer.h
A programs/us_query_rmsd/us_query_rmsd.cpp
A programs/us_query_rmsd/us_query_rmsd.h
A programs/us_query_rmsd/us_query_rmsd.pro
Log Message:
-----------
add a new program to sort RMSD values of modeling
Commit: 6605e677336d0e5ac45fe622c8fefc71bca44fac
https://github.com/ehb54/ultrascan3/commit/6605e677336d0e5ac45fe622c8fefc71bca44fac
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-04-13 (Thu, 13 Apr 2023)
Changed paths:
M programs/us_query_rmsd/us_query_rmsd.cpp
Log Message:
-----------
changed the layout
Commit: 1e6306bd1734e661fff5a14df858bc8fd6118f1e
https://github.com/ehb54/ultrascan3/commit/1e6306bd1734e661fff5a14df858bc8fd6118f1e
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-04-14 (Fri, 14 Apr 2023)
Changed paths:
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_query_rmsd/us_query_rmsd.h
Log Message:
-----------
add check_combo_content function. set the background color of high rmsd value.
Commit: d17a15e2959e6dabe973eebc09f87f5f735b5898
https://github.com/ehb54/ultrascan3/commit/d17a15e2959e6dabe973eebc09f87f5f735b5898
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-04-14 (Fri, 14 Apr 2023)
Changed paths:
M programs/us/us.cpp
M programs/us/us_win_data.cpp
Log Message:
-----------
add query rmsd values to the database menue
Commit: 3f1a8ddbcb192738428803383b62a80249168df2
https://github.com/ehb54/ultrascan3/commit/3f1a8ddbcb192738428803383b62a80249168df2
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-04-14 (Fri, 14 Apr 2023)
Changed paths:
M library.pri
A make_all.pro
R programs/us_export_legacy/us_export.pro
A programs/us_export_legacy/us_export_legacy.pro
R programs/us_model_gui/modelgui.pro
A programs/us_model_gui/us_model_gui.pro
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: 257c7f2ce240a3abda6ea21d2886c17fd95208cf
https://github.com/ehb54/ultrascan3/commit/257c7f2ce240a3abda6ea21d2886c17fd95208cf
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-04-14 (Fri, 14 Apr 2023)
Changed paths:
M programs/us_query_rmsd/us_query_rmsd.cpp
Log Message:
-----------
debugged reloading runID
Commit: 8da56597ff198c14da43c1ba09795882d751ab91
https://github.com/ehb54/ultrascan3/commit/8da56597ff198c14da43c1ba09795882d751ab91
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-04-14 (Fri, 14 Apr 2023)
Changed paths:
M programs/us_query_rmsd/us_query_rmsd.cpp
Log Message:
-----------
changed the window size of the rmsd query program
Commit: ce00a6cd62b5f8c9067c6daa4f81c657eb1cc4b9
https://github.com/ehb54/ultrascan3/commit/ce00a6cd62b5f8c9067c6daa4f81c657eb1cc4b9
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-04-14 (Fri, 14 Apr 2023)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_query_rmsd/us_query_rmsd.h
Log Message:
-----------
add report function to the rmsd query program
Commit: d29eaf20bd0bf270160f061fc40d00d5665cd8f9
https://github.com/ehb54/ultrascan3/commit/d29eaf20bd0bf270160f061fc40d00d5665cd8f9
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-04-15 (Sat, 15 Apr 2023)
Changed paths:
M gui/us_plot.cpp
M programs/us/us.cpp
M programs/us/us_win_data.cpp
M programs/us_abde/us_norm_profile.cpp
M programs/us_ddist_combine/us_ddist_combine.cpp
A programs/us_mwl_db_query/us_mwl_db_query.pro
A programs/us_mwl_db_query/us_mwl_pltctrl.cpp
A programs/us_mwl_db_query/us_mwl_pltctrl.h
A programs/us_mwl_db_query/us_mwl_run.cpp
A programs/us_mwl_db_query/us_mwl_run.h
A programs/us_mwl_db_query/us_mwlr_viewer.cpp
A programs/us_mwl_db_query/us_mwlr_viewer.h
A programs/us_query_rmsd/us_query_rmsd.cpp
A programs/us_query_rmsd/us_query_rmsd.h
A programs/us_query_rmsd/us_query_rmsd.pro
Log Message:
-----------
Merge pull request #65 from samo38/master
Query model RMSDs program
Commit: b7d711feccf85d1bc78f53a83f571c8be8a0844e
https://github.com/ehb54/ultrascan3/commit/b7d711feccf85d1bc78f53a83f571c8be8a0844e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-04-17 (Mon, 17 Apr 2023)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
R&D | GMP: 1. EXP -- when a new protocol is created, by default none of the cells should be selected in any optical system...
Commit: 9e71de2b7be12b5e68622f3398f3c560bef155f2
https://github.com/ehb54/ultrascan3/commit/9e71de2b7be12b5e68622f3398f3c560bef155f2
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-04-17 (Mon, 17 Apr 2023)
Changed paths:
M gui/us_plot.cpp
M library.pri
A make_all.pro
M programs/us/us.cpp
M programs/us/us_win_data.cpp
M programs/us_abde/us_norm_profile.cpp
M programs/us_ddist_combine/us_ddist_combine.cpp
R programs/us_export_legacy/us_export.pro
A programs/us_export_legacy/us_export_legacy.pro
R programs/us_model_gui/modelgui.pro
A programs/us_model_gui/us_model_gui.pro
A programs/us_mwl_db_query/us_mwl_db_query.pro
A programs/us_mwl_db_query/us_mwl_pltctrl.cpp
A programs/us_mwl_db_query/us_mwl_pltctrl.h
A programs/us_mwl_db_query/us_mwl_run.cpp
A programs/us_mwl_db_query/us_mwl_run.h
A programs/us_mwl_db_query/us_mwlr_viewer.cpp
A programs/us_mwl_db_query/us_mwlr_viewer.h
A programs/us_query_rmsd/us_query_rmsd.cpp
A programs/us_query_rmsd/us_query_rmsd.h
A programs/us_query_rmsd/us_query_rmsd.pro
Log Message:
-----------
Merge branch 'master' of github.com:ehb54/ultrascan3
Commit: 90f0e75f999a2937dbc05d4a7413494cb5abe6c1
https://github.com/ehb54/ultrascan3/commit/90f0e75f999a2937dbc05d4a7413494cb5abe6c1
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-04-20 (Thu, 20 Apr 2023)
Changed paths:
M programs/us_abde/us_norm_profile.cpp
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_query_rmsd/us_query_rmsd.h
Log Message:
-----------
fixed sorting issue with rmsd, add select ALL to edit profile combo
Commit: f0619e2fca7222417c0a22f3bce4580f2ed32c2f
https://github.com/ehb54/ultrascan3/commit/f0619e2fca7222417c0a22f3bce4580f2ed32c2f
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-04-20 (Thu, 20 Apr 2023)
Changed paths:
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_query_rmsd/us_query_rmsd.h
Log Message:
-----------
add threshold, simulate button, change highlighting
Commit: 9f86794aeccfcf7d8bb1386d17cbe35ef9edf3d0
https://github.com/ehb54/ultrascan3/commit/9f86794aeccfcf7d8bb1386d17cbe35ef9edf3d0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-04-21 (Fri, 21 Apr 2023)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
Log Message:
-----------
GMP: Switch between 5. ANALYSIS && 6. REPORT -- commented out a single line in us_autoflow_analysis which may cause race conditions [missing models in 6. REPORT]...
Commit: 435f25f72acceeec2f38cbad92c86ec64956d892
https://github.com/ehb54/ultrascan3/commit/435f25f72acceeec2f38cbad92c86ec64956d892
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-04-22 (Sat, 22 Apr 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP: 5. REPORT -- add debug statements...
Commit: 21fdf82bf1ecdbc5b82615dd378b0a7832b12c54
https://github.com/ehb54/ultrascan3/commit/21fdf82bf1ecdbc5b82615dd378b0a7832b12c54
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-04-22 (Sat, 22 Apr 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.h
Log Message:
-----------
GMP: 2. LIVE_UPT. && 6. REPORT -- add comments/reason for STOP/SKIP, and pass this to DB & to Report's User Interaction section...
Commit: cf0da5e3daf3cf4f34e1c2ae98a03d17ed8cf5be
https://github.com/ehb54/ultrascan3/commit/cf0da5e3daf3cf4f34e1c2ae98a03d17ed8cf5be
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2023-04-23 (Sun, 23 Apr 2023)
Changed paths:
M utils/us_astfem_math.cpp
Log Message:
-----------
Fix bug exiting when simdatas last scan is matching to last experimental scan
Commit: 322a88406ca73939252c97cee0badf1b95ac008f
https://github.com/ehb54/ultrascan3/commit/322a88406ca73939252c97cee0badf1b95ac008f
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-04-23 (Sun, 23 Apr 2023)
Changed paths:
M utils/us_astfem_math.cpp
Log Message:
-----------
Merge pull request #66 from doluk/simdata_range
Fix bug exiting when simdatas last scan is matching to last experimental scan
Commit: faea7119653db446a1583895acef4f4d13c37fd0
https://github.com/ehb54/ultrascan3/commit/faea7119653db446a1583895acef4f4d13c37fd0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-04-23 (Sun, 23 Apr 2023)
Changed paths:
M programs/us/us.cpp
Log Message:
-----------
MAin US launcher -- reverted (temporarily?) to case when user-level NOT synchronized...
Commit: fd5a2b54f265601c6ce4f602fbd78bae25218102
https://github.com/ehb54/ultrascan3/commit/fd5a2b54f265601c6ce4f602fbd78bae25218102
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-04-24 (Mon, 24 Apr 2023)
Changed paths:
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_query_rmsd/us_query_rmsd.h
Log Message:
-----------
add threshold for hightlighting the models
Commit: debaa92eaa32e94a92354287e857f82d99dfd16d
https://github.com/ehb54/ultrascan3/commit/debaa92eaa32e94a92354287e857f82d99dfd16d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-04-25 (Tue, 25 Apr 2023)
Changed paths:
M programs/us/us.cpp
Log Message:
-----------
US, main launcher -- check if at least one DB configuraiton set, if yes, synchronize user-level for the dafault DB...
Commit: c1ff4401eb87c69088707cafb67d5ffdab355f58
https://github.com/ehb54/ultrascan3/commit/c1ff4401eb87c69088707cafb67d5ffdab355f58
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-04-25 (Tue, 25 Apr 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP: 6. REPORT | GMP REPORTER -- small bug fixed on correct display of the times when meniscus was chosen at 5. ANALYSIS...
Commit: c4ff3d139d0906550810f325b9f699ed5c555f20
https://github.com/ehb54/ultrascan3/commit/c4ff3d139d0906550810f325b9f699ed5c555f20
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-04-25 (Tue, 25 Apr 2023)
Changed paths:
M programs/us/us.cpp
Log Message:
-----------
US, main launcher -- [1] check if at least one DB configuraiton set, if yes, synchronize user-level for the dafault DB...
Commit: 9fc7dfb4ded067d790e446cfedd76a6686c964e9
https://github.com/ehb54/ultrascan3/commit/9fc7dfb4ded067d790e446cfedd76a6686c964e9
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-04-26 (Wed, 26 Apr 2023)
Changed paths:
M programs/us/us.cpp
Log Message:
-----------
US, main launcher -- if DB connection defined BUT no DB connection (no internet), inform user of inability to synchronize & proceed...
Commit: 1ca20f19003c9221fa97d66142d99f396dbc078b
https://github.com/ehb54/ultrascan3/commit/1ca20f19003c9221fa97d66142d99f396dbc078b
Author: ehb54 <brookes at uthscsa.edu>
Date: 2023-04-27 (Thu, 27 Apr 2023)
Changed paths:
M utils/us_astfem_math.cpp
Log Message:
-----------
utils/us_astfem_math.cpp - fix for 'The simulated data does not cover the entire experimental time range and ends too early'
Commit: 722f48d32c851ea5fa66a92f409bae46f849c280
https://github.com/ehb54/ultrascan3/commit/722f48d32c851ea5fa66a92f409bae46f849c280
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-04-27 (Thu, 27 Apr 2023)
Changed paths:
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_query_rmsd/us_query_rmsd.h
Log Message:
-----------
query rmsd: load edit and raw data
Commit: 762f0f89c61b62a886e499a2f06b8299ca17b980
https://github.com/ehb54/ultrascan3/commit/762f0f89c61b62a886e499a2f06b8299ca17b980
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-04-30 (Sun, 30 Apr 2023)
Changed paths:
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_query_rmsd/us_query_rmsd.h
Log Message:
-----------
add loading the noises
Commit: dba8d8660e06389e8a631a0dc22aa820863f9ae9
https://github.com/ehb54/ultrascan3/commit/dba8d8660e06389e8a631a0dc22aa820863f9ae9
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-05-03 (Wed, 03 May 2023)
Changed paths:
M gui/us_new_spectrum.cpp
M gui/us_new_spectrum.h
Log Message:
-----------
save the spectrum to a csv file
Commit: 1313c267c93456cccdf63356d5aca5a6b3df0713
https://github.com/ehb54/ultrascan3/commit/1313c267c93456cccdf63356d5aca5a6b3df0713
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-05-04 (Thu, 04 May 2023)
Changed paths:
M gui/us_new_spectrum.cpp
Log Message:
-----------
add a line for the header
Commit: 65dc5b37e636fd4c013a6a463b55006063013ac3
https://github.com/ehb54/ultrascan3/commit/65dc5b37e636fd4c013a6a463b55006063013ac3
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-05-04 (Thu, 04 May 2023)
Changed paths:
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
Log Message:
-----------
modify load_spectra method to parse the dsp files
Commit: eb594d2df9a699c42a9c1df249258caa83f4e8fd
https://github.com/ehb54/ultrascan3/commit/eb594d2df9a699c42a9c1df249258caa83f4e8fd
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-05-04 (Thu, 04 May 2023)
Changed paths:
M programs/us/us.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.h
M utils/us_astfem_math.cpp
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: 722def8397b98aec8909e274d058e2b96257aa3d
https://github.com/ehb54/ultrascan3/commit/722def8397b98aec8909e274d058e2b96257aa3d
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-05-08 (Mon, 08 May 2023)
Changed paths:
M gui/us_extinction_gui.cpp
Log Message:
-----------
read dsp files from us_extiction_gui program
Commit: 3b9b06f2f8016f3239c0c3430a172dfb040502ae
https://github.com/ehb54/ultrascan3/commit/3b9b06f2f8016f3239c0c3430a172dfb040502ae
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-10 (Wed, 10 May 2023)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
GMP | 3. IMPORT -- few bugs fixed related to marking triples/cells/channels as excluded (when dropping) && when dealing with reference channel's triple, or when no data will be left...
Commit: 80bf68bc3557645d388967d99252e6d5d20b3582
https://github.com/ehb54/ultrascan3/commit/80bf68bc3557645d388967d99252e6d5d20b3582
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-10 (Wed, 10 May 2023)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
Log Message:
-----------
GMP | 3. IMPORT -- pick up the comments for dropping operations & save to DB for different (or all) cases: (1) triple(s) dropped; (2) channels dropped; (3) selected channel dropped...
Commit: 99f214397b8102fd3ca2c34bd3ea53ce16f77c1e
https://github.com/ehb54/ultrascan3/commit/99f214397b8102fd3ca2c34bd3ea53ce16f77c1e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-10 (Wed, 10 May 2023)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
GMP | 3. IMPORT -- nested (instead of linear) JSON portion of the dropped-triples-related operaitons, for easier and more consistent later retrieval in GMP report...
Commit: c763e110aada213673c507f765ab892179aee143
https://github.com/ehb54/ultrascan3/commit/c763e110aada213673c507f765ab892179aee143
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-10 (Wed, 10 May 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | 3. IMPORT -- pick up & print in the GMP report's User Interactions an information on the dropped-triples-related operaitons ...
Commit: 639d3e7c5367dc505cb8312f0e8c9b73a86bea31
https://github.com/ehb54/ultrascan3/commit/639d3e7c5367dc505cb8312f0e8c9b73a86bea31
Author: ehb54 <brookes at uthscsa.edu>
Date: 2023-05-11 (Thu, 11 May 2023)
Changed paths:
M gui/us_buffer_gui.cpp
Log Message:
-----------
us_buffer_gui.cpp - Gary's fix for manual buffer flag
Commit: e6a5fc7625337c4fac3b4ec8a826b776ef0716fa
https://github.com/ehb54/ultrascan3/commit/e6a5fc7625337c4fac3b4ec8a826b776ef0716fa
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-05-11 (Thu, 11 May 2023)
Changed paths:
M gui/us_extinction_gui.cpp
M gui/us_new_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
Log Message:
-----------
fixed indentation
Commit: 575169aad8793ec44a446debd12baf9472e5e544
https://github.com/ehb54/ultrascan3/commit/575169aad8793ec44a446debd12baf9472e5e544
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2023-05-11 (Thu, 11 May 2023)
Changed paths:
M gui/us_buffer_gui.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
Merge remote-tracking branch 'upstream/master'
Commit: a6d8ed7d6fdc45515cad156c83d88f5521b418bd
https://github.com/ehb54/ultrascan3/commit/a6d8ed7d6fdc45515cad156c83d88f5521b418bd
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-11 (Thu, 11 May 2023)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.h
Log Message:
-----------
GMP | 5. ANALYSIS -- for each cancel event (click 'Delete' for a given triple), user has to leave a comment on the canceling reason; this per-canceling comments are captured in DB for a global autoflow run;...
Commit: d9bdf26e7e04e7476fc85701f018bc594b30c064
https://github.com/ehb54/ultrascan3/commit/d9bdf26e7e04e7476fc85701f018bc594b30c064
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-11 (Thu, 11 May 2023)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
Log Message:
-----------
GMP -- cosmetic fix for a message on Optima(s) being disconnected...
Commit: 0e18848d348268751e06a7b2264eef76fd10fbf9
https://github.com/ehb54/ultrascan3/commit/0e18848d348268751e06a7b2264eef76fd10fbf9
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-11 (Thu, 11 May 2023)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP | 6. REPORT -- [capture & present in the User Input section on ] for each cancel event (click 'Delete' for a given triple), user has to leave a comment on the canceling reason; this per-canceling comments are captured in DB for a global autoflow run;...
Commit: 63bbd78459811e000efe6ebc5f0ece014b2efb8c
https://github.com/ehb54/ultrascan3/commit/63bbd78459811e000efe6ebc5f0ece014b2efb8c
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2023-05-12 (Fri, 12 May 2023)
Changed paths:
M gui/us_extinction_gui.cpp
M gui/us_new_spectrum.cpp
M gui/us_new_spectrum.h
M programs/us_abde/us_norm_profile.cpp
M programs/us_query_rmsd/us_query_rmsd.cpp
M programs/us_query_rmsd/us_query_rmsd.h
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
Log Message:
-----------
Merge pull request #67 from samo38/master
parse dsp file & save spectrum to csv
Commit: 2eea79932f181efa23927e6c054dcc1eb603d7bd
https://github.com/ehb54/ultrascan3/commit/2eea79932f181efa23927e6c054dcc1eb603d7bd
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2023-05-12 (Fri, 12 May 2023)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
Log Message:
-----------
GMP | RUN MAnager | 1. EXP. -- For UL<3 (non-admins) the following scenario: (1) check if the user is set as an operator, per-Opima basis; if yes to any, set eligible Optimas; (2) if eligible Optima(s) exist, re-initialize Lab/Rotor panel, exclude no-permit machines from list; cut operators to only current UL<3 user logged in; (3) if no eligible Optimas, stop at 1. General; inform user of no-permit situation; reset to the Run MAnager; also, if no runs in Run Manager's list for UL<3 (non-admin can re-attach to its own runs), show standard message re-directing to creating a new rpotocol ...
Commit: 96a347e95c94bf6b6a5f0762ae59d6a3f41884aa
https://github.com/ehb54/ultrascan3/commit/96a347e95c94bf6b6a5f0762ae59d6a3f41884aa
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2023-05-13 (Sat, 13 May 2023)
Changed paths:
M .github/workflows/codeql-analysis.yml
M admin/release/buildpkg.pl
M admin/release/centos7/Dockerfile
M admin/release/redhat/Dockerfile
M admin/release/ubuntu/Dockerfile
M gui/us_buffer_gui.cpp
M gui/us_buffer_gui.h
M gui/us_data_loader.cpp
M gui/us_extinction_gui.cpp
M gui/us_investigator.cpp
M gui/us_investigator.h
M gui/us_new_spectrum.cpp
M gui/us_new_spectrum.h
M gui/us_plot.cpp
M gui/us_plot.h
M gui/us_select_item.cpp
M gui/us_select_item.h
M gui/us_widgets.cpp
M gui/us_widgets.h
M gui/us_widgets_dialog.cpp
M gui/us_widgets_dialog.h
M library.pri
A make_all.pro
M programs/us/us.cpp
M programs/us/us_win_data.cpp
M programs/us_abde/us_abde.pro
M programs/us_abde/us_abde_main.cpp
A programs/us_abde/us_abde_main.h
A programs/us_abde/us_norm_profile.cpp
A programs/us_abde/us_norm_profile.h
R programs/us_abde_analysis/us_abde_analysis.h
R programs/us_abde_analysis/us_abde_analysis.pro
R programs/us_abde_analysis/us_abde_analysis_main.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.h
M programs/us_buoyancy/us_buoyancy.cpp
M programs/us_buoyancy/us_buoyancy.h
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_edit/us_edit.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
R programs/us_export_legacy/us_export.pro
A programs/us_export_legacy/us_export_legacy.pro
M programs/us_fematch/us_fematch.cpp
R programs/us_model_gui/modelgui.pro
A programs/us_model_gui/us_model_gui.pro
A programs/us_mwl_db_query/us_mwl_db_query.pro
A programs/us_mwl_db_query/us_mwl_pltctrl.cpp
A programs/us_mwl_db_query/us_mwl_pltctrl.h
A programs/us_mwl_db_query/us_mwl_run.cpp
A programs/us_mwl_db_query/us_mwl_run.h
A programs/us_mwl_db_query/us_mwlr_viewer.cpp
A programs/us_mwl_db_query/us_mwlr_viewer.h
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.pro
A programs/us_protocol_dev/us_protocol_dev.pro
A programs/us_protocol_dev/us_protocol_dev_gui.cpp
A programs/us_protocol_dev/us_protocol_dev_gui.h
A programs/us_protocol_dev/us_protocol_dev_main.cpp
M programs/us_pseudo_absorbance/us_add_refScan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_pseudo_absorbance/us_convert_scan.h
M programs/us_pseudo_absorbance/us_pseudo_absorbance.h
M programs/us_pseudo_absorbance/us_remove_ri.cpp
M programs/us_pseudo_absorbance/us_remove_ri.h
A programs/us_query_rmsd/us_query_rmsd.cpp
A programs/us_query_rmsd/us_query_rmsd.h
A programs/us_query_rmsd/us_query_rmsd.pro
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.h
M us_somo/develop/generic.pri
M us_somo/develop/include/us_hydrodyn.h
M us_somo/develop/include/us_hydrodyn_advanced_config.h
M us_somo/develop/include/us_hydrodyn_batch.h
M us_somo/develop/include/us_hydrodyn_misc.h
M us_somo/develop/include/us_hydrodyn_pdbdefs.h
M us_somo/develop/include/us_hydrodyn_sas_options_misc.h
M us_somo/develop/include/us_hydrodyn_saxs.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc_options.h
M us_somo/develop/include/us_hydrodyn_saxs_iqq_load_csv.h
M us_somo/develop/include/us_hydrodyn_saxs_load_csv.h
M us_somo/develop/include/us_hydrodyn_saxs_residuals.h
M us_somo/develop/include/us_hydrodyn_zeno.h
M us_somo/develop/include/us_mqt.h
M us_somo/develop/include/us_saxs_util.h
M us_somo/develop/include/us_vector.h
M us_somo/develop/src/us_hydrodyn.cpp
M us_somo/develop/src/us_hydrodyn_addatom.cpp
M us_somo/develop/src/us_hydrodyn_addhybrid.cpp
M us_somo/develop/src/us_hydrodyn_addresidue.cpp
M us_somo/develop/src/us_hydrodyn_addsaxs.cpp
M us_somo/develop/src/us_hydrodyn_advanced_config.cpp
M us_somo/develop/src/us_hydrodyn_batch.cpp
M us_somo/develop/src/us_hydrodyn_beads.cpp
M us_somo/develop/src/us_hydrodyn_core.cpp
M us_somo/develop/src/us_hydrodyn_grpy.cpp
M us_somo/develop/src/us_hydrodyn_load.cpp
M us_somo/develop/src/us_hydrodyn_misc.cpp
M us_somo/develop/src/us_hydrodyn_other.cpp
M us_somo/develop/src/us_hydrodyn_results.cpp
M us_somo/develop/src/us_hydrodyn_sas_options_misc.cpp
M us_somo/develop/src/us_hydrodyn_saxs.cpp
M us_somo/develop/src/us_hydrodyn_saxs_buffer.cpp
M us_somo/develop/src/us_hydrodyn_saxs_conc.cpp
M us_somo/develop/src/us_hydrodyn_saxs_external.cpp
M us_somo/develop/src/us_hydrodyn_saxs_fits.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_fit.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_gg.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_gui.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_wheel.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_options.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_plots.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_util.cpp
M us_somo/develop/src/us_hydrodyn_saxs_ift.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_bead_model.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_load_csv.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_sh.cpp
M us_somo/develop/src/us_hydrodyn_saxs_load_csv.cpp
M us_somo/develop/src/us_hydrodyn_saxs_loads.cpp
M us_somo/develop/src/us_hydrodyn_saxs_plots.cpp
M us_somo/develop/src/us_hydrodyn_saxs_pr.cpp
M us_somo/develop/src/us_hydrodyn_saxs_residuals.cpp
M us_somo/develop/src/us_hydrodyn_script.cpp
M us_somo/develop/src/us_hydrodyn_settings.cpp
M us_somo/develop/src/us_hydrodyn_util.cpp
M us_somo/develop/src/us_hydrodyn_zeno.cpp
M us_somo/develop/src/us_mqt.cpp
M us_somo/develop/src/us_saxs_util_iqq_pdb.cpp
M us_somo/develop/src/us_saxs_util_pm.cpp
M us_somo/develop/src/us_saxs_util_static.cpp
M us_somo/develop/src/us_vector.cpp
M us_somo/develop/us3_hydrodyn/main.cpp
M us_somo/etc/somo.config.new
M us_somo/etc/somo.defaults.new
M us_somo/etc/somo.saxs_atoms.new
A us_somo/somo/doc/manual/somo/Rg_from_Pr.png
A us_somo/somo/doc/manual/somo/somo-SAS_Miscellaneous_Options_new.png
A us_somo/somo/doc/manual/somo/somo-SAXS_SANS_Load_CSV1_new1.png
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M us_somo/somo/doc/manual/somo/somo_add_saxs.html
M us_somo/somo/doc/manual/somo/somo_advanced_config.html
M us_somo/somo/doc/manual/somo/somo_batch.html
A us_somo/somo/doc/manual/somo/somo_clear_directories_alert.png
M us_somo/somo/doc/manual/somo/somo_misc.html
M us_somo/somo/doc/manual/somo/somo_saxs.html
M us_somo/somo/doc/manual/somo/somo_saxs_load_csv.html
M us_somo/somo/doc/manual/somo/somo_saxs_options.html
A us_somo/somo/doc/manual/somo/somo_saxs_residuals.html
M utils/us_ana_profile.cpp
M utils/us_astfem_math.cpp
M utils/us_buffer.cpp
M utils/us_buffer.h
M utils/us_crypto.cpp
M utils/us_protocol_util.cpp
M utils/us_protocol_util.h
M utils/us_run_protocol.cpp
M utils/us_tar.cpp
Log Message:
-----------
Merge pull request #68 from ehb54/master
Merge master to demeler-dev
Compare: https://github.com/ehb54/ultrascan3/compare/9024eb6da3c2...96a347e95c94
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