[us-commits] [ehb54/ultrascan3] 69b601: PAM for linux password for php

aaron-auc noreply at github.com
Wed Oct 8 14:34:09 MDT 2025


  Branch: refs/heads/aaron-dev-test-utils
  Home:   https://github.com/ehb54/ultrascan3
  Commit: 69b6016db937a41c6d364bda55101d76f5564bc6
      https://github.com/ehb54/ultrascan3/commit/69b6016db937a41c6d364bda55101d76f5564bc6
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-06-09 (Mon, 09 Jun 2025)

  Changed paths:
    A admin/pam_auth_helper/README.md
    A admin/pam_auth_helper/pam.d/php-helper
    A admin/pam_auth_helper/pam_auth_helper.c
    A admin/pam_auth_helper/pam_auth_test.php

  Log Message:
  -----------
  PAM for linux password for php


  Commit: 22b88019d6a64a92f89f361f6cfd6737cab591d9
      https://github.com/ehb54/ultrascan3/commit/22b88019d6a64a92f89f361f6cfd6737cab591d9
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-06-09 (Mon, 09 Jun 2025)

  Changed paths:
    M admin/pam_auth_helper/README.md

  Log Message:
  -----------
  Update README.md


  Commit: e64cf5274f1d7302ca4582ea2e138b08a870e828
      https://github.com/ehb54/ultrascan3/commit/e64cf5274f1d7302ca4582ea2e138b08a870e828
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-06-09 (Mon, 09 Jun 2025)

  Changed paths:
    A admin/pam_auth_helper/Makefile

  Log Message:
  -----------
  PAM for linux password for php - makefile


  Commit: 56f6b69169ad4e990282f20f3531d347cdca36bf
      https://github.com/ehb54/ultrascan3/commit/56f6b69169ad4e990282f20f3531d347cdca36bf
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    A admin/pam/pam_no_ad/Makefile
    A admin/pam/pam_no_ad/README.md
    A admin/pam/pam_no_ad/files/php
    A admin/pam/pam_no_ad/files/sssd.conf
    R admin/pam_auth_helper/Makefile
    R admin/pam_auth_helper/README.md
    R admin/pam_auth_helper/pam.d/php-helper
    R admin/pam_auth_helper/pam_auth_helper.c
    R admin/pam_auth_helper/pam_auth_test.php

  Log Message:
  -----------
  PAM auth no AD/LDAP, Linux passwords only


  Commit: 5050f341dbde4ea01ba7f0e3aa9862fbb5fbe6b9
      https://github.com/ehb54/ultrascan3/commit/5050f341dbde4ea01ba7f0e3aa9862fbb5fbe6b9
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    M gui/us_csv_loader.cpp
    M gui/us_csv_loader.h

  Log Message:
  -----------
  Merge pull request #226 from ehb54/master

merge master to issue branch


  Commit: b16f0504f2f4404db161c55323d9df63622854fc
      https://github.com/ehb54/ultrascan3/commit/b16f0504f2f4404db161c55323d9df63622854fc
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/README.md

  Log Message:
  -----------
  Update README.md


  Commit: bd0a2263e0e3493aaa08624c81fcbd820f172a1d
      https://github.com/ehb54/ultrascan3/commit/bd0a2263e0e3493aaa08624c81fcbd820f172a1d
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    A admin/pam/pam_no_ad/pam_auth_test.php

  Log Message:
  -----------
  PAM for linux password for php - pam_auth_test.php


  Commit: 1a4ce194b046f388b13ae0c04a5f361478f90700
      https://github.com/ehb54/ultrascan3/commit/1a4ce194b046f388b13ae0c04a5f361478f90700
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/README.md

  Log Message:
  -----------
  Update README.md


  Commit: df89a15dee591af68573b8840c6f78586499c3a3
      https://github.com/ehb54/ultrascan3/commit/df89a15dee591af68573b8840c6f78586499c3a3
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/pam_auth_test.php

  Log Message:
  -----------
  PAM for linux password for php - pam_auth_test.php


  Commit: c65ba3d71581de0a41ee41787e66c4026190dc18
      https://github.com/ehb54/ultrascan3/commit/c65ba3d71581de0a41ee41787e66c4026190dc18
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/Makefile
    A admin/pam/pam_no_ad/files/mariadb
    M admin/pam/pam_no_ad/files/sssd.conf
    A admin/pam/pam_no_ad/files/system-auth-nosss

  Log Message:
  -----------
  pam - updated config


  Commit: 93f3f88fd38b866aad319181f61dc3e4aa8bcfe3
      https://github.com/ehb54/ultrascan3/commit/93f3f88fd38b866aad319181f61dc3e4aa8bcfe3
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/README.md

  Log Message:
  -----------
  pam - updated READEM


  Commit: bb52f3f31f0438cd66c01a5d7e4eb903ce4b37d0
      https://github.com/ehb54/ultrascan3/commit/bb52f3f31f0438cd66c01a5d7e4eb903ce4b37d0
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-06-12 (Thu, 12 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/README.md

  Log Message:
  -----------
  Update README.md


  Commit: 1eb1eb3811ccfad632482d58ed2a9ba6015609a4
      https://github.com/ehb54/ultrascan3/commit/1eb1eb3811ccfad632482d58ed2a9ba6015609a4
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-06-13 (Fri, 13 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/files/sssd.conf

  Log Message:
  -----------
  remove proxy_fast_switch

sssd.log reports [sssd] [sss_ini_call_validators] (0x0020): [rule/allowed_domain_options]: Attribute 'proxy_fast_switch' is not allowed in section 'domain/local'.


  Commit: 1c7bcff1b439d260af022b29abcf3f0bb17c3983
      https://github.com/ehb54/ultrascan3/commit/1c7bcff1b439d260af022b29abcf3f0bb17c3983
  Author: ehb54 <brookes at uthscsa.edu>
  Date:   2025-06-13 (Fri, 13 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/README.md
    A admin/pam/pam_no_ad/pam_auth_pamtester.php

  Log Message:
  -----------
  issue496 - pamtester testing


  Commit: 7ce6ebcdb8cbd49311441bf7937aba4fec2bffd6
      https://github.com/ehb54/ultrascan3/commit/7ce6ebcdb8cbd49311441bf7937aba4fec2bffd6
  Author: ehb54 <ehb54 at users.noreply.github.com>
  Date:   2025-06-13 (Fri, 13 Jun 2025)

  Changed paths:
    M admin/pam/pam_no_ad/README.md

  Log Message:
  -----------
  Update README.md


  Commit: 52d2e12f19167416a58de29b71876a11edd2caf6
      https://github.com/ehb54/ultrascan3/commit/52d2e12f19167416a58de29b71876a11edd2caf6
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-12 (Fri, 12 Sep 2025)

  Changed paths:
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M utils/us_ana_profile.cpp
    M utils/us_ana_profile.h

  Log Message:
  -----------
  GMP | 1. EXP.: 8.Aprofile -- [Add model ID to framework]custom grid implementation...


  Commit: 5c1814ae911784afd312e835594b931008d8bed4
      https://github.com/ehb54/ultrascan3/commit/5c1814ae911784afd312e835594b931008d8bed4
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-12 (Fri, 12 Sep 2025)

  Changed paths:
    M utils/us_ana_profile.cpp

  Log Message:
  -----------
  [1]GMP | 1. EXP.: 8.Aprofile -- [Add model ID to framework]custom grid implementation...


  Commit: 4e5d8b4cc07c2a5c5065886cf61e61c76fafffad
      https://github.com/ehb54/ultrascan3/commit/4e5d8b4cc07c2a5c5065886cf61e61c76fafffad
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-14 (Sun, 14 Sep 2025)

  Changed paths:
    M utils/us_ana_profile.cpp

  Log Message:
  -----------
  [2]GMP | 1. EXP.: 8.Aprofile -- [Add model ID to framework]custom grid implementation...ush


  Commit: 747e42f7732dc906533cbd0cd954e81e3e565d98
      https://github.com/ehb54/ultrascan3/commit/747e42f7732dc906533cbd0cd954e81e3e565d98
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.cpp

  Log Message:
  -----------
  GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...


  Commit: 0337b97ebfe25072971b60c29b4a2d390667da17
      https://github.com/ehb54/ultrascan3/commit/0337b97ebfe25072971b60c29b4a2d390667da17
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M programs/us_fit_meniscus/us_fit_meniscus_main.cpp

  Log Message:
  -----------
  [test1]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...


  Commit: 77987890dfd45f62499deda691795b2e88ed4c26
      https://github.com/ehb54/ultrascan3/commit/77987890dfd45f62499deda691795b2e88ed4c26
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M programs/us_fit_meniscus/us_fit_meniscus_main.cpp

  Log Message:
  -----------
  [test2]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...


  Commit: f0d642fb0b9364e641fb3119b5eb5f3d9a70d908
      https://github.com/ehb54/ultrascan3/commit/f0d642fb0b9364e641fb3119b5eb5f3d9a70d908
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.cpp

  Log Message:
  -----------
  [test4]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...


  Commit: cabec77d85cef315e34c7a7362b56b19524d3972
      https://github.com/ehb54/ultrascan3/commit/cabec77d85cef315e34c7a7362b56b19524d3972
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [test5]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...


  Commit: ffb3fb9dc2da42d44a60eaefd9a678aea956a204
      https://github.com/ehb54/ultrascan3/commit/ffb3fb9dc2da42d44a60eaefd9a678aea956a204
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-15 (Mon, 15 Sep 2025)

  Changed paths:
    M gui/us_model_loader.cpp

  Log Message:
  -----------
  [test6]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...


  Commit: 8373d17ba7f453a11426f8935218990b8e317f51
      https://github.com/ehb54/ultrascan3/commit/8373d17ba7f453a11426f8935218990b8e317f51
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [test77]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...


  Commit: d29359d571538fdcdba340546c1ace762f2585f7
      https://github.com/ehb54/ultrascan3/commit/d29359d571538fdcdba340546c1ace762f2585f7
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h

  Log Message:
  -----------
  Add function to check acceleration rate and first scan validity

Introduced `check_acceleration()` in `US_AstfemMath` to validate acceleration rates and detect potential issues with first scan timing. Enhanced error reporting for experiments with low acceleration or scans during acceleration phase. Updated header file accordingly.


  Commit: 00b9132e2f4a788b4b056a3277c0b52a4f0adec4
      https://github.com/ehb54/ultrascan3/commit/00b9132e2f4a788b4b056a3277c0b52a4f0adec4
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_2dsa/us_2dsa.cpp

  Log Message:
  -----------
  Refactor speed step validation logic and integrate `check_acceleration()`

Replaced manual speed step validation with the `check_acceleration()` function from `US_AstfemMath`, improving modularity and error detection. Enhanced message box handling for better user feedback on scan timing and acceleration issues.


  Commit: b3b5449d21badd09a6c72964db5f09a1c6ac22ab
      https://github.com/ehb54/ultrascan3/commit/b3b5449d21badd09a6c72964db5f09a1c6ac22ab
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp

  Log Message:
  -----------
  Replace manual acceleration checks with `check_acceleration()` helper

Streamlined acceleration validation using `US_AstfemMath::check_acceleration()` for improved modularity, reduced code redundancy, and enhanced error handling. Updated message box logic to display detailed user feedback when issues are detected.


  Commit: e7990f3902c576ee20053e446ae508e1d193ef29
      https://github.com/ehb54/ultrascan3/commit/e7990f3902c576ee20053e446ae508e1d193ef29
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_convert/us_convert_gui.cpp

  Log Message:
  -----------
  Refactor message box logic and integrate updated `check_acceleration()` validation

Simplified acceleration validation by utilizing `US_AstfemMath::check_acceleration()`. Streamlined message box handling to improve readability and user feedback for experiments with acceleration issues.


  Commit: 31e99caf2928581de4943b1119be73a9436d1447
      https://github.com/ehb54/ultrascan3/commit/31e99caf2928581de4943b1119be73a9436d1447
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_experiment/us_experiment_gui_optima.cpp

  Log Message:
  -----------
  Remove obsolete low acceleration check and associated UI logic

Eliminated redundant low acceleration validation and message box logic from `us_experiment_gui_optima.cpp`, simplifying the code and improving maintainability.


  Commit: 91d63509d1f79d315225eff1b2d7fb5b6115ecc3
      https://github.com/ehb54/ultrascan3/commit/91d63509d1f79d315225eff1b2d7fb5b6115ecc3
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_fematch/us_fematch.cpp

  Log Message:
  -----------
  Replace manual acceleration UI logic with `check_acceleration()` integration

Streamlined acceleration validation by utilizing `US_AstfemMath::check_acceleration()`. Removed redundant manual checks and simplified message box handling for improved user feedback and code maintainability.


  Commit: a460bef08c775745062f6fe891f2893e2002d117
      https://github.com/ehb54/ultrascan3/commit/a460bef08c775745062f6fe891f2893e2002d117
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_mpi_analysis/us_mpi_analysis.cpp

  Log Message:
  -----------
  Replace manual acceleration UI logic with `check_acceleration()` integration

Streamlined acceleration validation by utilizing `US_AstfemMath::check_acceleration()`. Removed redundant manual checks and simplified message box handling for improved user feedback and code maintainability.


  Commit: 009aba4948371da1e6e6f05f46f5a11c092b324c
      https://github.com/ehb54/ultrascan3/commit/009aba4948371da1e6e6f05f46f5a11c092b324c
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  Integrate `check_acceleration()` in `us_reporter_gmp.cpp`

Replaced manual acceleration checks with `US_AstfemMath::check_acceleration()`, streamlining validation and improving error reporting with enhanced message box logic. Removed redundant code for better maintainability.


  Commit: bee67ad94ebbc7c9821dc0aad18e6bce737b4568
      https://github.com/ehb54/ultrascan3/commit/bee67ad94ebbc7c9821dc0aad18e6bce737b4568
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Update utils/us_astfem_math.cpp

Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com>


  Commit: 227d32eb57b85946a3d39e4643719738eeddabb5
      https://github.com/ehb54/ultrascan3/commit/227d32eb57b85946a3d39e4643719738eeddabb5
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Update utils/us_astfem_math.cpp

Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com>


  Commit: fa44532656ec9a8863fe76d5878356f412f827fb
      https://github.com/ehb54/ultrascan3/commit/fa44532656ec9a8863fe76d5878356f412f827fb
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp

  Log Message:
  -----------
  Integrate `check_acceleration()` in `us_vhw_enhanced.cpp`

Added validation for acceleration profiles using `US_AstfemMath::check_acceleration()`. Enhanced message box logic for user feedback and streamlined error handling for scan data issues.


  Commit: 3b4ade0ff450252975099029f53fae26589346a6
      https://github.com/ehb54/ultrascan3/commit/3b4ade0ff450252975099029f53fae26589346a6
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M gui/us_analysis_base2.cpp

  Log Message:
  -----------
  Integrate `check_acceleration()` in `us_analysis_base2.cpp` in order to add it to us_second_moment, us_dcdt, us_pcsa

Added acceleration validation leveraging `US_AstfemMath::check_acceleration()`. Enhanced message box logic for user feedback and streamlined error handling for scan data issues.


  Commit: 9fb462a87d5cfef990e583e0aa8dda091841052b
      https://github.com/ehb54/ultrascan3/commit/9fb462a87d5cfef990e583e0aa8dda091841052b
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_fematch/us_resplot_fem.cpp

  Log Message:
  -----------
  [debug]GMP | 6. REPORT: CG -- ...


  Commit: 42982afb88ddce0d00ece507d399d59735905d72
      https://github.com/ehb54/ultrascan3/commit/42982afb88ddce0d00ece507d399d59735905d72
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug1]GMP | 6. REPORT: CG -- ...


  Commit: 493798b230e227ab68985ca50882c28058efd160
      https://github.com/ehb54/ultrascan3/commit/493798b230e227ab68985ca50882c28058efd160
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug2]GMP | 6. REPORT: CG -- ...


  Commit: a468cc16f534c3769ca2b90b209848d226d596fc
      https://github.com/ehb54/ultrascan3/commit/a468cc16f534c3769ca2b90b209848d226d596fc
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug3]GMP | 6. REPORT: CG -- ...


  Commit: 35851638d1fc647e0bd2dd3861e329898ac2fec1
      https://github.com/ehb54/ultrascan3/commit/35851638d1fc647e0bd2dd3861e329898ac2fec1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug4]GMP | 6. REPORT: CG -- ...


  Commit: 8de77f30a55f3d955960b24d9fc654f85a643da1
      https://github.com/ehb54/ultrascan3/commit/8de77f30a55f3d955960b24d9fc654f85a643da1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug5]GMP | 6. REPORT: CG -- ...


  Commit: 116f06f0e3cb97e592455a896ea074987b1d687d
      https://github.com/ehb54/ultrascan3/commit/116f06f0e3cb97e592455a896ea074987b1d687d
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug5]GMP | 6. REPORT: CG -- ...


  Commit: ada9fc194b6107aa9234582f328928f990f49ab8
      https://github.com/ehb54/ultrascan3/commit/ada9fc194b6107aa9234582f328928f990f49ab8
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-16 (Tue, 16 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [debug7]GMP | 6. REPORT: CG -- ...


  Commit: 32bb4b7a5dc2070311763e159ad64dab3cc648d4
      https://github.com/ehb54/ultrascan3/commit/32bb4b7a5dc2070311763e159ad64dab3cc648d4
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M doc/manual/advanced_config.body

  Log Message:
  -----------
  Enhance advanced_config documentation with new flags

Added detailed descriptions for various configuration flags related to debugging and speed settings.


  Commit: b52f75b2a6792fda0bab5a3eb02250629eed0b4a
      https://github.com/ehb54/ultrascan3/commit/b52f75b2a6792fda0bab5a3eb02250629eed0b4a
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M doc/manual/advanced_config.body

  Log Message:
  -----------
  Update wording

Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com>


  Commit: 62d4ea94709d6f723457f2bc6436f79c5486ddae
      https://github.com/ehb54/ultrascan3/commit/62d4ea94709d6f723457f2bc6436f79c5486ddae
  Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M doc/manual/advanced_config.body

  Log Message:
  -----------
  Update hsclogo description in advanced_config


  Commit: 803cac4e0551cf55251878109066602030536089
      https://github.com/ehb54/ultrascan3/commit/803cac4e0551cf55251878109066602030536089
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M programs/us_fematch/us_fematch.cpp

  Log Message:
  -----------
  Integrate `check_acceleration()` in `us_fematch.cpp`

Replaced manual acceleration validation with `US_AstfemMath::check_acceleration()`. Improved error handling and message box logic to provide better user feedback for scan data issues.


  Commit: 6147e952e75e949c7809a98a21beb2107f87e395
      https://github.com/ehb54/ultrascan3/commit/6147e952e75e949c7809a98a21beb2107f87e395
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.h

  Log Message:
  -----------
  Clarify `check_acceleration()` documentation for return format and behavior


  Commit: d976a8685de0adc6d272b35cec81016a34e4a38e
      https://github.com/ehb54/ultrascan3/commit/d976a8685de0adc6d272b35cec81016a34e4a38e
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Refactor `check_acceleration()` logic for improved readability and robustness

Simplified variable naming, added guards for edge cases, and clarified acceleration rate and time checks. Enhanced error messages to provide more detailed user feedback.


  Commit: 6c6ba45b05dacb1c10cf803c959c2b9b4bdbe14c
      https://github.com/ehb54/ultrascan3/commit/6c6ba45b05dacb1c10cf803c959c2b9b4bdbe14c
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp

  Log Message:
  -----------
  Fix incorrect dereference of `edata` in `check_acceleration()` call


  Commit: 103683b0b42e6d3ee23a86bb3749b3cc0aa08e11
      https://github.com/ehb54/ultrascan3/commit/103683b0b42e6d3ee23a86bb3749b3cc0aa08e11
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  Fix incorrect dereference of `edata` in `check_acceleration()` call within `us_reporter_gmp.cpp`


  Commit: 347ef44a538b0dfd5dd64c49aa7d9baecf6f1c03
      https://github.com/ehb54/ultrascan3/commit/347ef44a538b0dfd5dd64c49aa7d9baecf6f1c03
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-09-18 (Thu, 18 Sep 2025)

  Changed paths:
    M doc/manual/advanced_config.body

  Log Message:
  -----------
  Merge pull request #263 from ehb54/lukas/debug_text_docs

Document advanced settings debug text values/flags


  Commit: 9d51aa93fbdb6f1a84076e3ddd128210f701d29d
      https://github.com/ehb54/ultrascan3/commit/9d51aa93fbdb6f1a84076e3ddd128210f701d29d
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-19 (Fri, 19 Sep 2025)

  Changed paths:
    M gui/us_analysis_base2.cpp

  Log Message:
  -----------
  Refactor speed profile and time state handling in `us_analysis_base2.cpp`

Refactored speed profile processing to improve clarity and maintainability. Added enhanced logic to handle time state files and initialization of simulation parameters. Simplified acceleration checks using `US_AstfemMath::check_acceleration()`.


  Commit: 1f7336dfecb15d81c71c88e6922196f0137c6431
      https://github.com/ehb54/ultrascan3/commit/1f7336dfecb15d81c71c88e6922196f0137c6431
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-19 (Fri, 19 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.cpp

  Log Message:
  -----------
  Adjust `kT1Factor` initialization and format specifiers in error messages

Revised `kT1Factor` to use explicit calculation for enhanced clarity. Updated float formatting in error messages from 'g' to 'f' for consistent precision in user feedback.


  Commit: b29fc424db0d4aa7e5e60d830be2fbadb73666e1
      https://github.com/ehb54/ultrascan3/commit/b29fc424db0d4aa7e5e60d830be2fbadb73666e1
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-19 (Fri, 19 Sep 2025)

  Changed paths:
    M programs/us_2dsa/us_2dsa.cpp

  Log Message:
  -----------
  Remove manual `check_acceleration()` validation in `us_2dsa.cpp`

Eliminated redundant acceleration validation logic and message box handling. Streamlined by removing unused `US_AstfemMath::check_acceleration()` integration.


  Commit: 626668c35b1cdd774c6ba744a7cd473feb548602
      https://github.com/ehb54/ultrascan3/commit/626668c35b1cdd774c6ba744a7cd473feb548602
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-19 (Fri, 19 Sep 2025)

  Changed paths:
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_fematch/us_fematch.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  Simplify `check_results` bounds checks in message box handling across programs


  Commit: b21a559ee9e33fed395a785dbaa8f14fe58e9831
      https://github.com/ehb54/ultrascan3/commit/b21a559ee9e33fed395a785dbaa8f14fe58e9831
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-19 (Fri, 19 Sep 2025)

  Changed paths:
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp

  Log Message:
  -----------
  Remove unused `check_acceleration` logic and disable `update(0)` call in `us_vhw_enhanced.cpp` to prevent unnecessary update cycle


  Commit: a4fcd0c5999879b9af70342cbf2a4d40b9d2b803
      https://github.com/ehb54/ultrascan3/commit/a4fcd0c5999879b9af70342cbf2a4d40b9d2b803
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-21 (Sun, 21 Sep 2025)

  Changed paths:
    M gui/us_scan_excl_gui.cpp
    M gui/us_scan_excl_gui.h
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M utils/us_ana_profile.cpp
    M utils/us_ana_profile.h

  Log Message:
  -----------
  GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...


  Commit: e49834c3a05a6ffbc730f24be564d3c319a06d2a
      https://github.com/ehb54/ultrascan3/commit/e49834c3a05a6ffbc730f24be564d3c319a06d2a
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h

  Log Message:
  -----------
  Add `calc_omega2t` functionality to `US_AstfemMath` for omega2t calculations

Introduced a new method `calc_omega2t` in `US_AstfemMath` to calculate omega2t values based on speed profiles, acceleration rates, and time parameters. Enhanced flexibility for processing speed step data.


  Commit: 046484c8433d54042b223de7aebd2b793424b6a9
      https://github.com/ehb54/ultrascan3/commit/046484c8433d54042b223de7aebd2b793424b6a9
  Author: doluk <69309597+doluk at users.noreply.github.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M programs/us_astfem_sim/us_astfem_sim.cpp

  Log Message:
  -----------
  Refactor speed step simulation logic in `us_astfem_sim.cpp`

Streamlined speed profile processing by removing redundant legacy logic and incorporating `calc_omega2t` for precise omega2t and time grid calculations. Enhanced clarity and maintainability of simulation loop.


  Commit: 1246e6e3724e8a382585cc65e0208d3008bfbeeb
      https://github.com/ehb54/ultrascan3/commit/1246e6e3724e8a382585cc65e0208d3008bfbeeb
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h

  Log Message:
  -----------
  [1a]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...


  Commit: 5e6c7f858d8e6163099c500c970c02e54801243b
      https://github.com/ehb54/ultrascan3/commit/5e6c7f858d8e6163099c500c970c02e54801243b
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [2]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...


  Commit: 5c98f81ac04ec7e465bdc36d6c858c27e3f146a1
      https://github.com/ehb54/ultrascan3/commit/5c98f81ac04ec7e465bdc36d6c858c27e3f146a1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M gui/us_scan_excl_gui.cpp
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [3]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...


  Commit: 5edb9ce91335769271fb5f593482a97dc4233059
      https://github.com/ehb54/ultrascan3/commit/5edb9ce91335769271fb5f593482a97dc4233059
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [4]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...


  Commit: 9aff495b37873080961f8c231a3ce673377f80d3
      https://github.com/ehb54/ultrascan3/commit/9aff495b37873080961f8c231a3ce673377f80d3
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [5]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...


  Commit: 1351f83ecb06b104ec53c3eac4dfa8e1deb9e008
      https://github.com/ehb54/ultrascan3/commit/1351f83ecb06b104ec53c3eac4dfa8e1deb9e008
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [5a]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...


  Commit: 321a8cba345ec3c3f2187e0ba10f28376fd49a3e
      https://github.com/ehb54/ultrascan3/commit/321a8cba345ec3c3f2187e0ba10f28376fd49a3e
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit_main.cpp

  Log Message:
  -----------
  [5b-TEST]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...


  Commit: 373ac0ac501856ea0df8f4f579f953d89ec810b0
      https://github.com/ehb54/ultrascan3/commit/373ac0ac501856ea0df8f4f579f953d89ec810b0
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [6b-TEST]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...


  Commit: ea3905ba9097c5eed14e034d6656fd0c84dff988
      https://github.com/ehb54/ultrascan3/commit/ea3905ba9097c5eed14e034d6656fd0c84dff988
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit_main.cpp

  Log Message:
  -----------
  [6b-TEST- restore]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...


  Commit: ed8dbfb27ca0afd51e92c0717d6e05536217b8b4
      https://github.com/ehb54/ultrascan3/commit/ed8dbfb27ca0afd51e92c0717d6e05536217b8b4
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [7-TEST- restore]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...


  Commit: df769b270aea86fedc2fb0da2875e71741354606
      https://github.com/ehb54/ultrascan3/commit/df769b270aea86fedc2fb0da2875e71741354606
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-09-22 (Mon, 22 Sep 2025)

  Changed paths:
    M gui/us_analysis_base2.cpp
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_fematch/us_fematch.cpp
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h

  Log Message:
  -----------
  Merge pull request #262 from ehb54/lukas/bad-timestate

Bad timestate warnings


  Commit: 021924be498aba94508063128ff7d169d1d6c80c
      https://github.com/ehb54/ultrascan3/commit/021924be498aba94508063128ff7d169d1d6c80c
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-09-23 (Tue, 23 Sep 2025)

  Changed paths:
    M gui/us_model_loader.cpp
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_fematch/us_resplot_fem.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.cpp
    M programs/us_fit_meniscus/us_fit_meniscus_main.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M utils/us_ana_profile.cpp
    M utils/us_ana_profile.h

  Log Message:
  -----------
  Merge pull request #261 from ehb54/alexey-dev-issue553

Alexey dev issue553: GMP-Custom grid: pass also CG-modelID throught the framework


  Commit: 905f41462ec9dab9667e915d639af2970e21a7a4
      https://github.com/ehb54/ultrascan3/commit/905f41462ec9dab9667e915d639af2970e21a7a4
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-24 (Wed, 24 Sep 2025)

  Changed paths:
    M gui/us_scan_excl_gui.cpp

  Log Message:
  -----------
  GMP | 1. EXP.: AProfile && 4. EDIT -- [proper settings of min/max for scan_beg|nth|end for different optics systems] init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...


  Commit: 671b8e4d0e4951014a52280942d6a6c9712f14fa
      https://github.com/ehb54/ultrascan3/commit/671b8e4d0e4951014a52280942d6a6c9712f14fa
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-24 (Wed, 24 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit_main.cpp

  Log Message:
  -----------
  GMP | 1. EXP.: AProfile && 4. EDIT -- [UNIT TEST for multi-channel run] init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...


  Commit: d584fa48438a0f9d744b750a6abe23533cc48b52
      https://github.com/ehb54/ultrascan3/commit/d584fa48438a0f9d744b750a6abe23533cc48b52
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-24 (Wed, 24 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit_main.cpp

  Log Message:
  -----------
  GMP | 1. EXP.: AProfile && 4. EDIT -- [RESTORE--UNIT TEST for multi-channel run] init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...


  Commit: 84f86b86f77bbcd33e113217d09cbda59701b58b
      https://github.com/ehb54/ultrascan3/commit/84f86b86f77bbcd33e113217d09cbda59701b58b
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-24 (Wed, 24 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [DEBUGS]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...


  Commit: 8ecca10f20a347fd906905b16f8e85ef5afff22a
      https://github.com/ehb54/ultrascan3/commit/8ecca10f20a347fd906905b16f8e85ef5afff22a
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-24 (Wed, 24 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [1 DEBUGS]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...


  Commit: fe9b9031b3af683efa02792cf18ca46a51d376d8
      https://github.com/ehb54/ultrascan3/commit/fe9b9031b3af683efa02792cf18ca46a51d376d8
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-24 (Wed, 24 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  [2 DEBUGS]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...


  Commit: 4c16cc30bec6d2d9ea234a0ad826339c18f1dc27
      https://github.com/ehb54/ultrascan3/commit/4c16cc30bec6d2d9ea234a0ad826339c18f1dc27
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-24 (Wed, 24 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp

  Log Message:
  -----------
  GMP | 1. EXP.: AProfile && 4. EDIT -- treat scan exclusion differently for ABDE vs. VELOCITY types (ABDE - usually only last scan remains for each triple, ensured manually; VEL. - based on AProfile's settings beg|nth|end)...


  Commit: b1ff389cba607cd5f34556fb6945f050ad099ff8
      https://github.com/ehb54/ultrascan3/commit/b1ff389cba607cd5f34556fb6945f050ad099ff8
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-25 (Thu, 25 Sep 2025)

  Changed paths:
    M gui/us_scan_excl_gui.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...


  Commit: b557af349d02a148cef58c38976319f129cf4afa
      https://github.com/ehb54/ultrascan3/commit/b557af349d02a148cef58c38976319f129cf4afa
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-25 (Thu, 25 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  [1]GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...


  Commit: 57f3b61a10ffe0edcfdee555dbf12a7a6d15dc11
      https://github.com/ehb54/ultrascan3/commit/57f3b61a10ffe0edcfdee555dbf12a7a6d15dc11
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-25 (Thu, 25 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [1]GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...


  Commit: 825febd6fda9e31b55b9c0e13a0f2af701b3c6e0
      https://github.com/ehb54/ultrascan3/commit/825febd6fda9e31b55b9c0e13a0f2af701b3c6e0
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-25 (Thu, 25 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [3]GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...


  Commit: 4f9217705b688c38c3e420a609c2692c23a7e160
      https://github.com/ehb54/ultrascan3/commit/4f9217705b688c38c3e420a609c2692c23a7e160
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-25 (Thu, 25 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [4]GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...


  Commit: f8379662ac83a104ca49b29cc3b5a7f830944d05
      https://github.com/ehb54/ultrascan3/commit/f8379662ac83a104ca49b29cc3b5a7f830944d05
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-25 (Thu, 25 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [5]GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...


  Commit: 036113902d7405af0d641ad3afb98b2010cef02f
      https://github.com/ehb54/ultrascan3/commit/036113902d7405af0d641ad3afb98b2010cef02f
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-26 (Fri, 26 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit_main.cpp

  Log Message:
  -----------
  [unit test for multi-channel case] GMP | 4. EDIT -- treat scan exclusion differently for ABDE vs. VELOCITY types (ABDE - usually only last scan remains for each triple, ensured manually; VEL. - based on AProfile's settings beg|nth|end)...


  Commit: 2e456f0922765ab66ffb5844fc6ef570a37ce431
      https://github.com/ehb54/ultrascan3/commit/2e456f0922765ab66ffb5844fc6ef570a37ce431
  Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
  Date:   2025-09-26 (Fri, 26 Sep 2025)

  Changed paths:
    A admin/pam/pam_no_ad/Makefile
    A admin/pam/pam_no_ad/README.md
    A admin/pam/pam_no_ad/files/mariadb
    A admin/pam/pam_no_ad/files/php
    A admin/pam/pam_no_ad/files/sssd.conf
    A admin/pam/pam_no_ad/files/system-auth-nosss
    A admin/pam/pam_no_ad/pam_auth_pamtester.php
    A admin/pam/pam_no_ad/pam_auth_test.php

  Log Message:
  -----------
  Merge pull request #225 from ehb54/ehb54-issue-496

PAM for linux password for php


  Commit: 0fa81d8ac6c3fc80cbfb121038e9a6a0cde634bf
      https://github.com/ehb54/ultrascan3/commit/0fa81d8ac6c3fc80cbfb121038e9a6a0cde634bf
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-26 (Fri, 26 Sep 2025)

  Changed paths:
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit_main.cpp

  Log Message:
  -----------
  [REstore form -- unit test for multi-channel case] GMP | 4. EDIT -- treat scan exclusion differently for ABDE vs. VELOCITY types (ABDE - usually only last scan remains for each triple, ensured manually; VEL. - based on AProfile's settings beg|nth|end)...


  Commit: 154500215bfe391bf9dd7fda43456fe170c3c834
      https://github.com/ehb54/ultrascan3/commit/154500215bfe391bf9dd7fda43456fe170c3c834
  Author: saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-09-26 (Fri, 26 Sep 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: update the program GUI to get the cusotm grid from the users


  Commit: 42b30b23222d6e9b070861a382ebe34ad77611ab
      https://github.com/ehb54/ultrascan3/commit/42b30b23222d6e9b070861a382ebe34ad77611ab
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-26 (Fri, 26 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  GMP | 6. REPORT -- do not display scan exclusion settings Scan section if optics type not used...


  Commit: 9f8fa54c2859fc4a8c4f996ef37443963f0e4ab2
      https://github.com/ehb54/ultrascan3/commit/9f8fa54c2859fc4a8c4f996ef37443963f0e4ab2
  Author: saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-09-26 (Fri, 26 Sep 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  us_grid_editor: add function to parse a grid file


  Commit: f6b215b4f73633db8bee542cefd88da89761620b
      https://github.com/ehb54/ultrascan3/commit/f6b215b4f73633db8bee542cefd88da89761620b
  Author: saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-09-26 (Fri, 26 Sep 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp

  Log Message:
  -----------
  us_grid_editor: save the user grid model locally and on DB


  Commit: 4ec94c4a344d53369ca022d39c166df3b0859490
      https://github.com/ehb54/ultrascan3/commit/4ec94c4a344d53369ca022d39c166df3b0859490
  Author: saeed <saeed.mortezazadeh25 at gmail.com>
  Date:   2025-09-27 (Sat, 27 Sep 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  fixed the issue with resetting to the default after pasrsing the CSV file. Refine the functions to reload the model from DB and local drive


  Commit: f286c4ffff8050ccb898b5446f3915031c6b7585
      https://github.com/ehb54/ultrascan3/commit/f286c4ffff8050ccb898b5446f3915031c6b7585
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-09-27 (Sat, 27 Sep 2025)

  Changed paths:
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h

  Log Message:
  -----------
  Merge pull request #264 from samo38/issue_563

Issue 563: Custom Grid Program


  Commit: e3282fcfa778c046776d3abf2a718a9617230b4d
      https://github.com/ehb54/ultrascan3/commit/e3282fcfa778c046776d3abf2a718a9617230b4d
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-29 (Mon, 29 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  GMP | 6. REPORT -- do not specify details on Scan exlusions of there were no any...


  Commit: 8a112ba9e5ae7859d58f117c486f2e52cbba2899
      https://github.com/ehb54/ultrascan3/commit/8a112ba9e5ae7859d58f117c486f2e52cbba2899
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-29 (Mon, 29 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp

  Log Message:
  -----------
  [1]GMP | 6. REPORT -- do not specify details on Scan exlusions of there were no any...


  Commit: d1287da6bdde6dcb79acc019617ea24b5d93d410
      https://github.com/ehb54/ultrascan3/commit/d1287da6bdde6dcb79acc019617ea24b5d93d410
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-29 (Mon, 29 Sep 2025)

  Changed paths:
    A admin/pam/pam_no_ad/Makefile
    A admin/pam/pam_no_ad/README.md
    A admin/pam/pam_no_ad/files/mariadb
    A admin/pam/pam_no_ad/files/php
    A admin/pam/pam_no_ad/files/sssd.conf
    A admin/pam/pam_no_ad/files/system-auth-nosss
    A admin/pam/pam_no_ad/pam_auth_pamtester.php
    A admin/pam/pam_no_ad/pam_auth_test.php
    M gui/us_analysis_base2.cpp
    M gui/us_model_loader.cpp
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_fematch/us_fematch.cpp
    M programs/us_fematch/us_resplot_fem.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.cpp
    M programs/us_fit_meniscus/us_fit_meniscus_main.cpp
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
    M utils/us_ana_profile.cpp
    M utils/us_ana_profile.h
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h

  Log Message:
  -----------
  Merge pull request #265 from ehb54/master

add master


  Commit: 8dff3550c25c2827799de8e3f245f1f34a9044ab
      https://github.com/ehb54/ultrascan3/commit/8dff3550c25c2827799de8e3f245f1f34a9044ab
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-29 (Mon, 29 Sep 2025)

  Changed paths:
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h

  Log Message:
  -----------
  [2]GMP | 6. REPORT -- do not specify details on Scan exlusions of there were no any...


  Commit: d927f1c7acffd7436189c83726111d960cbd1e2d
      https://github.com/ehb54/ultrascan3/commit/d927f1c7acffd7436189c83726111d960cbd1e2d
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-30 (Tue, 30 Sep 2025)

  Changed paths:
    M gui/us_scan_excl_gui.cpp

  Log Message:
  -----------
  GMP | 1. EXP.:APorile:ScanExcls. -- do not allow remainig scans to be less than 3 per channel;restore otherwise...


  Commit: 4c3a97f136b46591a7381b85fb726ea2fb87f7f2
      https://github.com/ehb54/ultrascan3/commit/4c3a97f136b46591a7381b85fb726ea2fb87f7f2
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-30 (Tue, 30 Sep 2025)

  Changed paths:
    M gui/us_scan_excl_gui.cpp
    M gui/us_scan_excl_gui.h

  Log Message:
  -----------
  GMP | 1. EXP.:APorile:ScanExcls. -- [Modified logic for--] do not allow remainig scans to be less than 3 per channel;restore otherwise...


  Commit: 7c65e196caeaf47f46d74fe305d0dec5c3f6f4e1
      https://github.com/ehb54/ultrascan3/commit/7c65e196caeaf47f46d74fe305d0dec5c3f6f4e1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-30 (Tue, 30 Sep 2025)

  Changed paths:
    M gui/us_scan_excl_gui.cpp

  Log Message:
  -----------
  [1]GMP | 1. EXP.:APorile:ScanExcls. -- [Modified logic for--] do not allow remainig scans to be less than 3 per channel;restore otherwise...


  Commit: 07f7d5c89032aa8dac1c13fe611e51d8e076cfde
      https://github.com/ehb54/ultrascan3/commit/07f7d5c89032aa8dac1c13fe611e51d8e076cfde
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-30 (Tue, 30 Sep 2025)

  Changed paths:
    M gui/us_scan_excl_gui.cpp

  Log Message:
  -----------
  GMP | 1. EXP.:APorile:ScanExcls. -- backward compatibility with older protocols with no nth scan excl. settings...


  Commit: 232008ddbb42fa37d28890542961579241726f13
      https://github.com/ehb54/ultrascan3/commit/232008ddbb42fa37d28890542961579241726f13
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-09-30 (Tue, 30 Sep 2025)

  Changed paths:
    M gui/us_scan_excl_gui.cpp

  Log Message:
  -----------
  [1]GMP | 1. EXP.:APorile:ScanExcls. -- backward compatibility with older protocols with no nth scan excl. settings...


  Commit: 003fcead31be5da3e4a5744bd8b5a9a3adb9686d
      https://github.com/ehb54/ultrascan3/commit/003fcead31be5da3e4a5744bd8b5a9a3adb9686d
  Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
  Date:   2025-10-02 (Thu, 02 Oct 2025)

  Changed paths:
    M gui/us_scan_excl_gui.cpp
    M gui/us_scan_excl_gui.h
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M utils/us_ana_profile.cpp
    M utils/us_ana_profile.h

  Log Message:
  -----------
  Merge pull request #267 from ehb54/alexey-dev-issue556

Alexey dev issue556: Scan Exclusion Profile Editor for AProfile in GMP #556


  Commit: 9b2e06a5e4a371044a913065222c7d91603e0085
      https://github.com/ehb54/ultrascan3/commit/9b2e06a5e4a371044a913065222c7d91603e0085
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-10-02 (Thu, 02 Oct 2025)

  Changed paths:
    M programs/us_integral/us_integral.cpp

  Log Message:
  -----------
  US_intargal -- avoid loading editProfiles...


  Commit: abfa96706807a26b5b0642ed078a97acf01a3e18
      https://github.com/ehb54/ultrascan3/commit/abfa96706807a26b5b0642ed078a97acf01a3e18
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-10-02 (Thu, 02 Oct 2025)

  Changed paths:
    M programs/us_integral/us_integral.cpp

  Log Message:
  -----------
  US_intergal -- restore editProfiles read; add debugs...


  Commit: d712bbbb0ceb306e036f428d4245c0e3b87c097b
      https://github.com/ehb54/ultrascan3/commit/d712bbbb0ceb306e036f428d4245c0e3b87c097b
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-10-02 (Thu, 02 Oct 2025)

  Changed paths:
    M programs/us_integral/us_integral.cpp

  Log Message:
  -----------
  [1]US_intergal -- restore editProfiles read; add debugs...


  Commit: 088595bbbb4e35e890cb8d2bf308945e0333f3f1
      https://github.com/ehb54/ultrascan3/commit/088595bbbb4e35e890cb8d2bf308945e0333f3f1
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-10-02 (Thu, 02 Oct 2025)

  Changed paths:
    M programs/us_integral/us_integral.cpp

  Log Message:
  -----------
  [2]US_intergal -- restore editProfiles read; add debugs...


  Commit: 15343601bc0774d196184c33adbddefab8430a11
      https://github.com/ehb54/ultrascan3/commit/15343601bc0774d196184c33adbddefab8430a11
  Author: alexsav815 <alexsav.science at gmail.com>
  Date:   2025-10-02 (Thu, 02 Oct 2025)

  Changed paths:
    M programs/us_integral/us_integral.cpp

  Log Message:
  -----------
  [3]US_intergal -- create curves' labels from the model's desc...


  Commit: d62e7b57ef0ea16676a289087f4e4ba7a92ef3f8
      https://github.com/ehb54/ultrascan3/commit/d62e7b57ef0ea16676a289087f4e4ba7a92ef3f8
  Author: HabGab <gabirh at myumanitoba.ca>
  Date:   2025-10-03 (Fri, 03 Oct 2025)

  Changed paths:
    M programs/us_integral/us_integral.cpp

  Log Message:
  -----------
  Merge pull request #268 from ehb54/alexey-dev-issue562

Alexey dev issue562: Enable plotting CG-SG integral distr.


  Commit: 934f494e4683d95677c5a7051705426df529cf13
      https://github.com/ehb54/ultrascan3/commit/934f494e4683d95677c5a7051705426df529cf13
  Author: aaron <aaron at aucsolutions.com>
  Date:   2025-10-08 (Wed, 08 Oct 2025)

  Changed paths:
    A admin/pam/pam_no_ad/Makefile
    A admin/pam/pam_no_ad/README.md
    A admin/pam/pam_no_ad/files/mariadb
    A admin/pam/pam_no_ad/files/php
    A admin/pam/pam_no_ad/files/sssd.conf
    A admin/pam/pam_no_ad/files/system-auth-nosss
    A admin/pam/pam_no_ad/pam_auth_pamtester.php
    A admin/pam/pam_no_ad/pam_auth_test.php
    M doc/manual/advanced_config.body
    M gui/us_analysis_base2.cpp
    M gui/us_model_loader.cpp
    M gui/us_scan_excl_gui.cpp
    M gui/us_scan_excl_gui.h
    M programs/us_2dsa/us_2dsa.cpp
    M programs/us_analysis_profile/us_analysis_profile.cpp
    M programs/us_astfem_sim/us_astfem_sim.cpp
    M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
    M programs/us_convert/us_convert_gui.cpp
    M programs/us_edit/us_edit.cpp
    M programs/us_edit/us_edit.h
    M programs/us_experiment/us_experiment_gui_optima.cpp
    M programs/us_fematch/us_fematch.cpp
    M programs/us_fematch/us_resplot_fem.cpp
    M programs/us_fit_meniscus/us_fit_meniscus.cpp
    M programs/us_fit_meniscus/us_fit_meniscus_main.cpp
    M programs/us_grid_editor/us_grid_editor.cpp
    M programs/us_grid_editor/us_grid_editor.h
    M programs/us_integral/us_integral.cpp
    M programs/us_mpi_analysis/us_mpi_analysis.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.cpp
    M programs/us_reporter_gmp/us_reporter_gmp.h
    M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
    M utils/us_ana_profile.cpp
    M utils/us_ana_profile.h
    M utils/us_astfem_math.cpp
    M utils/us_astfem_math.h

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/master' into aaron-dev-test-utils


Compare: https://github.com/ehb54/ultrascan3/compare/8b4d2dc93db3...934f494e4683

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