[us-commits] [ehb54/ultrascan3] af1a5c: Additional Unit Testing us_ana_profile, us_crc, us...
aaron-auc
noreply at github.com
Wed Oct 8 16:57:30 MDT 2025
Branch: refs/heads/master
Home: https://github.com/ehb54/ultrascan3
Commit: af1a5c8bc4252ae4bf9c3467711811c2f536d72f
https://github.com/ehb54/ultrascan3/commit/af1a5c8bc4252ae4bf9c3467711811c2f536d72f
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M CMakeLists.txt
M test/utils/CMakeLists.txt
A test/utils/test_us_ana_profile.cpp
A test/utils/test_us_ana_profile.h
A test/utils/test_us_crc.cpp
A test/utils/test_us_crc.h
A test/utils/test_us_crypto.cpp
A test/utils/test_us_crypto.h
A test/utils/test_us_dataIO.cpp
A test/utils/test_us_dataIO.h
A test/utils/test_us_math2.cpp
A test/utils/test_us_math2.h
A test/utils/test_us_matrix.cpp
A test/utils/test_us_matrix.h
M test/utils/test_us_utils_main.cpp
M utils/CMakeLists.txt
M utils/us_ana_profile.cpp
Log Message:
-----------
Additional Unit Testing us_ana_profile, us_crc, us_crypto, us_dataio, us_math2, and us_matrix.
Commit: 1408abf68cb2d299a8ad20905a1898d9f12c0958
https://github.com/ehb54/ultrascan3/commit/1408abf68cb2d299a8ad20905a1898d9f12c0958
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M CMakeLists.txt
M test/utils/CMakeLists.txt
M test/utils/test_us_crc.cpp
M test/utils/test_us_crc.h
M test/utils/test_us_math2.cpp
M test/utils/test_us_math2.h
M test/utils/test_us_matrix.cpp
A test/utils/test_us_simparms.cpp
A test/utils/test_us_simparms.h
M test/utils/test_us_utils_main.cpp
M utils/CMakeLists.txt
Log Message:
-----------
Tests pass locally except for TestUSMath2::test_linefit() and TestUSAnaProfile::testEqualityOperator() which have issues submitted to resolve.
Commit: f87d9a2ed4bbc9a4d91dd3543dbaf4b62edca765
https://github.com/ehb54/ultrascan3/commit/f87d9a2ed4bbc9a4d91dd3543dbaf4b62edca765
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M test/utils/CMakeLists.txt
A test/utils/test_us_memory.cpp
A test/utils/test_us_memory.h
A test/utils/test_us_settings.cpp
A test/utils/test_us_settings.h
A test/utils/test_us_time_state.cpp
A test/utils/test_us_time_state.h
M test/utils/test_us_utils_main.cpp
M utils/CMakeLists.txt
Log Message:
-----------
Add tests for us_memory, us_settings, and us_time_state
Commit: 4abb61bbcc128d9293b4ff30674448f285671ab1
https://github.com/ehb54/ultrascan3/commit/4abb61bbcc128d9293b4ff30674448f285671ab1
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M test/utils/CMakeLists.txt
A test/utils/test_us_analyte.cpp
A test/utils/test_us_analyte.h
A test/utils/test_us_db2.cpp
A test/utils/test_us_db2.h
M test/utils/test_us_utils_main.cpp
M utils/CMakeLists.txt
Log Message:
-----------
Add tests for us_analyte and us_db2
Commit: e9390c59f666fcc05efbd47251b28fe67c3e0b91
https://github.com/ehb54/ultrascan3/commit/e9390c59f666fcc05efbd47251b28fe67c3e0b91
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M test/utils/CMakeLists.txt
A test/utils/test_us_astfem_math.cpp
A test/utils/test_us_astfem_math.h
A test/utils/test_us_project.cpp
A test/utils/test_us_project.h
M test/utils/test_us_utils_main.cpp
M utils/CMakeLists.txt
Log Message:
-----------
Add tests for us_astfem_math and us_project
Commit: a9e23b7e83f8210188d4489c503430d9c26f97ee
https://github.com/ehb54/ultrascan3/commit/a9e23b7e83f8210188d4489c503430d9c26f97ee
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M CMakeLists.txt
M test/utils/CMakeLists.txt
A test/utils/mock/mock_us_db2.h
A test/utils/test_mock_us_db2.cpp
A test/utils/test_mock_us_db2.h
M test/utils/test_us_analyte.cpp
A test/utils/test_us_project_gtest.cpp
A test/utils/test_us_project_gtest.h
M test/utils/test_us_utils_main.cpp
M utils/us_db2.h
Log Message:
-----------
Add gtest
Commit: eaf6180d144d0c86dc4caec50879155740cc76e3
https://github.com/ehb54/ultrascan3/commit/eaf6180d144d0c86dc4caec50879155740cc76e3
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M test/utils/CMakeLists.txt
A test/utils/test_us_astfem_rsa.cpp
A test/utils/test_us_astfem_rsa.h
A test/utils/test_us_model.cpp
A test/utils/test_us_model.h
A test/utils/test_us_stiffbase.cpp
A test/utils/test_us_stiffbase.h
M utils/CMakeLists.txt
Log Message:
-----------
Add tests for us_astfem_rsa, us_model, and us_stiffbase
Commit: 824605af8d275da7234b0a9d7f3672a8c001ea43
https://github.com/ehb54/ultrascan3/commit/824605af8d275da7234b0a9d7f3672a8c001ea43
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M .github/workflows/codeql-analysis.yml
A admin/codeql/custom-queries/cpp/find-unused-functions.ql
M test/utils/CMakeLists.txt
M test/utils/mock/mock_us_db2.h
M test/utils/test_us_analyte.cpp
M test/utils/test_us_math2.cpp
M test/utils/test_us_project_gtest.cpp
M utils/us_db2.h
Log Message:
-----------
Rebase merge
Commit: 60e801e42c2edfe91afb422f4031c95eaae2d4da
https://github.com/ehb54/ultrascan3/commit/60e801e42c2edfe91afb422f4031c95eaae2d4da
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
A admin/codeql/custom-queries/cpp/codeql-pack.yml
M admin/codeql/custom-queries/cpp/find-unused-functions.ql
Log Message:
-----------
Update codeql custom query
Commit: 7b370a88e30b380b1e40382cecb82aa1310eba3f
https://github.com/ehb54/ultrascan3/commit/7b370a88e30b380b1e40382cecb82aa1310eba3f
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
A test/utils/test_us_buffer.cpp
M test/utils/test_us_datafiles.cpp
Log Message:
-----------
Add test_us_buffer.cpp
Commit: 363e32b18e6f47106c9dd75c7f1793511472a3b0
https://github.com/ehb54/ultrascan3/commit/363e32b18e6f47106c9dd75c7f1793511472a3b0
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Add apt-get install libmysqlclient-dev
Commit: 77a89e083d64e4c862e61b9716a1e7d1f1892df4
https://github.com/ehb54/ultrascan3/commit/77a89e083d64e4c862e61b9716a1e7d1f1892df4
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M CMakeLists.txt
Log Message:
-----------
Update to find mysql during build
Commit: 69b88e6a47d8369f97892eddcbfa839473ce9120
https://github.com/ehb54/ultrascan3/commit/69b88e6a47d8369f97892eddcbfa839473ce9120
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M test/utils/test_us_db2.cpp
M test/utils/test_us_db2.h
Log Message:
-----------
removed query test
Commit: 3f7d4721cc43cb9f79fb187ebb5aa7f15babd257
https://github.com/ehb54/ultrascan3/commit/3f7d4721cc43cb9f79fb187ebb5aa7f15babd257
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
run specific test
Commit: d84cc16735556c0d8fb706bc768a6a4dc10db9a8
https://github.com/ehb54/ultrascan3/commit/d84cc16735556c0d8fb706bc768a6a4dc10db9a8
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-03 (Tue, 03 Sep 2024)
Changed paths:
M test/utils/test_us_math2.cpp
Log Message:
-----------
test_us_math2 was updated after sigma calculation was verified.
Commit: 6276beb67d5181eba36861791acef5e415723e89
https://github.com/ehb54/ultrascan3/commit/6276beb67d5181eba36861791acef5e415723e89
Author: aaron <aaron at aucsolutions.com>
Date: 2025-06-29 (Sun, 29 Jun 2025)
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M LICENSE.txt
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M admin/release/ubuntu/Dockerfile
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A admin/us_branch/README.md
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M doc/manual/advanced_config.body
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R doc/manual/fe_match.body
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A doc/manual/images/us_convert/us_convert_14.png
M doc/manual/index.body
A doc/manual/load/load_auc.body
A doc/manual/load/load_colormap.body
A doc/manual/load/load_model_dis-MID.body
A doc/manual/load/load_model_distrib.body
A doc/manual/load/load_noise.body
A doc/manual/load/load_noise_details.body
R doc/manual/load_auc.body
R doc/manual/load_colormap.body
R doc/manual/load_model_dis-MID.body
R doc/manual/load_model_distrib.body
R doc/manual/load_noise.body
R doc/manual/load_noise_details.body
M doc/manual/mainstyle.css
M doc/manual/make-html.sh
M doc/manual/make-wraps.sh
M doc/manual/manage_data.body
M doc/manual/manage_data_cmenu.body
M doc/manual/manage_data_thelp.body
M doc/manual/manual.qhp
M doc/manual/mwlr_view_load.body
M doc/manual/mwlr_viewer.body
M doc/manual/pcsa.body
M doc/manual/pcsa_analys.body
M doc/manual/pcsa_mlines.body
M doc/manual/pcsa_rpscan.body
M doc/manual/pseudo3d_combine.body
M doc/manual/register.body
M doc/manual/reporter.body
A doc/manual/sassoc.body
M doc/manual/second_moment.body
M doc/manual/simparams.body
A doc/manual/somo.body
M doc/manual/time_derivative.body
M doc/manual/ultrascan3.txt
M doc/manual/us_edit.body
M doc/manual/us_edit_mwl.body
M doc/manual/us_fds_filemanager.body
M doc/manual/uscolor2.body
M doc/manual/vhw_combine.body
M doc/manual/vhw_distrib_plot.body
M doc/manual/vhw_enhanced.body
M gui/images.qrc
A gui/images/table.png
M gui/us_buffer_gui.cpp
M gui/us_buffer_gui.h
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
M gui/us_data_loader.cpp
M gui/us_data_loader.h
M gui/us_extinction_gui.cpp
M gui/us_extinction_gui.h
M gui/us_gui_util.cpp
M gui/us_gui_util.h
M gui/us_images.cpp
M gui/us_images.h
M gui/us_license.cpp
M gui/us_license.h
M gui/us_load_auc.cpp
M gui/us_load_auc.h
M gui/us_model_gui.cpp
M gui/us_model_gui.h
M gui/us_plot.cpp
M gui/us_plot.h
M gui/us_plot3d.cpp
M gui/us_predict1.cpp
M gui/us_predict1.h
M gui/us_rotor_gui.cpp
M gui/us_rotor_gui.h
M gui/us_run_details2.cpp
M gui/us_run_details2.h
M gui/us_select_item.cpp
M gui/us_select_item.h
M gui/us_sim_params_gui.cpp
M gui/us_sim_params_gui.h
M gui/us_spectrodata.cpp
M gui/us_spectrodata.h
M gui/us_widgets.cpp
M gui/us_widgets.h
M library.pri
M makeall.sh
M programs/us/us_de_DE.ts
M programs/us_2dsa/us_2dsa.cpp
M programs/us_2dsa/us_analysis_control_2d.cpp
M programs/us_abde/us_abde_main.cpp
M programs/us_abde/us_norm_profile.cpp
M programs/us_abde/us_norm_profile.h
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_astfem_sim/us_astfem_sim.h
M programs/us_astfem_sim/us_clipdata.h
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
M programs/us_audit_trail_gmp/us_audit_trail_gmp.h
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.h
M programs/us_autoflow_analysis/us_autoflow_analysis.pro
M programs/us_buoyancy/us_buoyancy.cpp
M programs/us_com_project/us_com_project.pro
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_com_project_academic/us_com_project_academic.pro
M programs/us_config/us_database.cpp
M programs/us_config/us_database.h
M programs/us_convert/us_convert.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_convert_gui.h
M programs/us_convert/us_experiment.cpp
M programs/us_convert/us_get_run.cpp
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
M programs/us_esigner_gmp/us_esigner_gmp.cpp
M programs/us_esigner_gmp/us_esigner_gmp.h
R programs/us_esigner_gmp_aux/us_esigner_gmp.pro
R programs/us_esigner_gmp_aux/us_esigner_gmp_main.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment.pro
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_fematch/us_fematch.cpp
M programs/us_fematch/us_fematch.pro
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M programs/us_legacy_converter/us_legacy_converter.cpp
M programs/us_legacy_converter/us_legacy_converter.h
M programs/us_manage_data/us_data_tree.cpp
M programs/us_manage_data/us_data_tree.h
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_mpi_analysis/us_mpi_analysis.h
R programs/us_mwl_db_query/us_mwl_db_query.pro
R programs/us_mwl_db_query/us_mwl_pltctrl.cpp
R programs/us_mwl_db_query/us_mwl_pltctrl.h
R programs/us_mwl_db_query/us_mwl_run.cpp
R programs/us_mwl_db_query/us_mwl_run.h
R programs/us_mwl_db_query/us_mwlr_viewer.cpp
R programs/us_mwl_db_query/us_mwlr_viewer.h
M programs/us_mwl_species_fit/us_load_run_noise.cpp
M programs/us_mwl_species_fit/us_load_run_noise.h
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.cpp
M programs/us_mwl_species_fit/us_mwl_sf_plot3d.h
M programs/us_mwl_species_fit/us_mwl_species_fit.cpp
M programs/us_mwl_species_fit/us_mwl_species_fit.h
M programs/us_mwl_species_fit/us_mwl_species_fit.pro
A programs/us_mwl_species_fit/us_mwl_species_fit_main.cpp
M programs/us_mwl_species_sim/us_mwl_species_sim.cpp
M programs/us_protocol_dev/us_protocol_dev.pro
M programs/us_protocol_dev/us_protocol_dev_gui.cpp
M programs/us_protocol_dev/us_protocol_dev_gui.h
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
M programs/us_pseudo_absorbance/us_convert_scan.cpp
M programs/us_query_rmsd/us_query_rmsd.pro
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_reporter_gmp/us_reporter_gmp.pro
M programs/us_spectrum/us_spectrum.cpp
M programs/us_spectrum/us_spectrum.h
M programs/us_xpn_viewer/us_xpn_viewer.pro
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.h
M test/utils/CMakeLists.txt
A test/utils/test_us_simparams.cpp
A test/utils/test_us_simparams.h
M test/utils/test_us_utils_main.cpp
M us_somo/attic/INSTALL
M us_somo/develop/src/us_hydrodyn_dad.cpp
M us_somo/develop/src/us_hydrodyn_mals.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_makeiq.cpp
M us_somo/develop/src/us_util.cpp
M us_somo/extra/haddock/bin_i73/mpi/runjob
M us_somo/somo/doc/manual/somo/IntegralBaselineTheory.html
M us_somo/somo/doc/manual/somo/baseline_best.html
M us_somo/somo/doc/manual/somo/copyright.html
M us_somo/somo/doc/manual/somo/cormap.html
M us_somo/somo/doc/manual/somo/dad_parameters.html
M us_somo/somo/doc/manual/somo/fractal_dimension_options.html
M us_somo/somo/doc/manual/somo/mals_options.html
M us_somo/somo/doc/manual/somo/mals_parameters.html
M us_somo/somo/doc/manual/somo/mals_saxs_options.html
M us_somo/somo/doc/manual/somo/saxs_hplc_Gaussian_theory.html
M us_somo/somo/doc/manual/somo/saxs_hplc_ciq.html
M us_somo/somo/doc/manual/somo/saxs_hplc_conc_csv_frames.html
M us_somo/somo/doc/manual/somo/saxs_hplc_dctr.html
M us_somo/somo/doc/manual/somo/saxs_hplc_nth.html
M us_somo/somo/doc/manual/somo/saxs_hplc_options.html
M us_somo/somo/doc/manual/somo/saxs_hplc_p3d.html
M us_somo/somo/doc/manual/somo/saxs_hplc_parameters.html
M us_somo/somo/doc/manual/somo/saxs_ift.html
M us_somo/somo/doc/manual/somo/somo.html
M us_somo/somo/doc/manual/somo/somo_BEST_Analysis.html
M us_somo/somo/doc/manual/somo/somo_BEST_setup.html
M us_somo/somo/doc/manual/somo/somo_Dammin_Dammif_bead_model_properties.html
M us_somo/somo/doc/manual/somo/somo_SAXS_search.html
M us_somo/somo/doc/manual/somo/somo_add_saxs.html
M us_somo/somo/doc/manual/somo/somo_addatom.html
M us_somo/somo/doc/manual/somo/somo_addhybridization.html
M us_somo/somo/doc/manual/somo/somo_advanced_config.html
M us_somo/somo/doc/manual/somo/somo_anaflex_options.html
M us_somo/somo/doc/manual/somo/somo_asa.html
M us_somo/somo/doc/manual/somo/somo_batch.html
M us_somo/somo/doc/manual/somo/somo_bd_options.html
M us_somo/somo/doc/manual/somo/somo_bead_model_format.html
M us_somo/somo/doc/manual/somo/somo_bead_output.html
M us_somo/somo/doc/manual/somo/somo_cluster.html
M us_somo/somo/doc/manual/somo/somo_cluster_advanced_options.html
M us_somo/somo/doc/manual/somo/somo_cluster_config.html
M us_somo/somo/doc/manual/somo/somo_cluster_dmd.html
M us_somo/somo/doc/manual/somo/somo_cluster_results.html
M us_somo/somo/doc/manual/somo/somo_cluster_status.html
M us_somo/somo/doc/manual/somo/somo_cluster_submit.html
M us_somo/somo/doc/manual/somo/somo_comparative.html
M us_somo/somo/doc/manual/somo/somo_dammin_opts.html
M us_somo/somo/doc/manual/somo/somo_dmd_options.html
M us_somo/somo/doc/manual/somo/somo_file.html
M us_somo/somo/doc/manual/somo/somo_grid.html
M us_somo/somo/doc/manual/somo/somo_grid_overlap.html
M us_somo/somo/doc/manual/somo/somo_hydro.html
M us_somo/somo/doc/manual/somo/somo_hydro_expert_mode.html
M us_somo/somo/doc/manual/somo/somo_hydro_zeno.html
M us_somo/somo/doc/manual/somo/somo_hydro_zeno.html_old
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M us_somo/somo/doc/manual/somo/somo_mals_saxs.html
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M us_somo/somo/doc/manual/somo/somo_overlap.html
M us_somo/somo/doc/manual/somo/somo_pdb_editor.html
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M us_somo/somo/doc/manual/somo/somo_pdb_parsing_expert_mode.html
M us_somo/somo/doc/manual/somo/somo_pdb_visualization.html
M us_somo/somo/doc/manual/somo/somo_residue.html
M us_somo/somo/doc/manual/somo/somo_results.html
M us_somo/somo/doc/manual/somo/somo_save.html
M us_somo/somo/doc/manual/somo/somo_saxs.html
M us_somo/somo/doc/manual/somo/somo_saxs_buffer.html
M us_somo/somo/doc/manual/somo/somo_saxs_conc.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_baseline_corr.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_fit.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_linear_baselines.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_movie.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_skewedGauss.html
M us_somo/somo/doc/manual/somo/somo_saxs_hplc_svd.html
M us_somo/somo/doc/manual/somo/somo_saxs_iqq_residuals.html
M us_somo/somo/doc/manual/somo/somo_saxs_load_csv.html
M us_somo/somo/doc/manual/somo/somo_saxs_mw.html
M us_somo/somo/doc/manual/somo/somo_saxs_options.html
M us_somo/somo/doc/manual/somo/somo_saxs_residuals.html
M us_somo/somo/doc/manual/somo/somo_show_hydro.html
M us_somo/somo/doc/manual/somo/somo_uv_vis.html
M us_somo/somo/doc/manual/somo/somo_vdw_overlap.html
M us_somo/somo/doc/manual/somo/underconstruction.html
M us_somo/somo/doc/manual/somo/uv_vis_options.html
M utils/CMakeLists.txt
R utils/calc_coefficient_documentation.pdf
M utils/libus_utils.pro
M utils/us_ana_profile.cpp
A utils/us_archive.cpp
A utils/us_archive.h
M utils/us_astfem_math.cpp
A utils/us_csv_data.cpp
A utils/us_csv_data.h
M utils/us_dataIO.cpp
M utils/us_dataIO.h
M utils/us_geturl.h
M utils/us_hydrosim.cpp
M utils/us_link_ssl.cpp
M utils/us_link_ssl.h
M utils/us_math2.h
M utils/us_model.cpp
M utils/us_model.h
M utils/us_report_gmp.cpp
M utils/us_run_protocol.cpp
M utils/us_run_protocol.h
M utils/us_simparms.cpp
M utils/us_xpn_data.cpp
M utils/us_xpn_data.h
Log Message:
-----------
Merge remote-tracking branch 'origin/master' into aaron-dev-test-utils
# Conflicts:
# CMakeLists.txt
# test/utils/CMakeLists.txt
# test/utils/test_us_utils_main.cpp
# utils/CMakeLists.txt
Commit: a423656c7a4997ae177e5406c7b8f846d5cda459
https://github.com/ehb54/ultrascan3/commit/a423656c7a4997ae177e5406c7b8f846d5cda459
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-01 (Tue, 01 Jul 2025)
Changed paths:
M CMakeLists.txt
A admin/test/docker/Dockerfile
A test-docker.sh
M test/utils/CMakeLists.txt
M test/utils/mock/mock_us_db2.h
M test/utils/test_mock_us_db2.cpp
M test/utils/test_mock_us_db2.h
M test/utils/test_us_buffer.cpp
M test/utils/test_us_project.cpp
M test/utils/test_us_project.h
R test/utils/test_us_project_gtest.cpp
R test/utils/test_us_project_gtest.h
R test/utils/test_us_simparams.cpp
R test/utils/test_us_simparams.h
M test/utils/test_us_simparms.cpp
M test/utils/test_us_utils_main.cpp
M utils/CMakeLists.txt
A utils/ius_db2.h
M utils/us_db2.cpp
M utils/us_db2.h
M utils/us_project.cpp
M utils/us_project.h
Log Message:
-----------
dependency injection, docker, and remove duplicates
Commit: b10a7ddbde27cb31ff6ce03fac85921856c2c90f
https://github.com/ehb54/ultrascan3/commit/b10a7ddbde27cb31ff6ce03fac85921856c2c90f
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-03 (Thu, 03 Jul 2025)
Changed paths:
M CMakeLists.txt
M test-docker.sh
A test/common/qt_test_base.cpp
A test/common/qt_test_base.h
M test/utils/CMakeLists.txt
M test/utils/test_us_ana_profile.cpp
M test/utils/test_us_ana_profile.h
M test/utils/test_us_analyte.cpp
M test/utils/test_us_analyte.h
M test/utils/test_us_astfem_math.cpp
M test/utils/test_us_astfem_math.h
M test/utils/test_us_buffer.cpp
M test/utils/test_us_crc.cpp
M test/utils/test_us_crc.h
M test/utils/test_us_crypto.cpp
M test/utils/test_us_crypto.h
M test/utils/test_us_dataIO.cpp
M test/utils/test_us_dataIO.h
M test/utils/test_us_datafiles.cpp
M test/utils/test_us_datafiles.h
M test/utils/test_us_db2.cpp
M test/utils/test_us_db2.h
M test/utils/test_us_math2.cpp
M test/utils/test_us_math2.h
M test/utils/test_us_matrix.cpp
M test/utils/test_us_matrix.h
M test/utils/test_us_memory.cpp
M test/utils/test_us_memory.h
M test/utils/test_us_settings.cpp
M test/utils/test_us_settings.h
M test/utils/test_us_simparms.cpp
M test/utils/test_us_simparms.h
M test/utils/test_us_utils_main.cpp
M utils/us_dataIO.h
Log Message:
-----------
convert qtests to google tests
Commit: 54099cb2ff6ed13d069418492a1d7c6430277fb4
https://github.com/ehb54/ultrascan3/commit/54099cb2ff6ed13d069418492a1d7c6430277fb4
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-03 (Thu, 03 Jul 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
remove specific test logic
Commit: 5e9fb44fd3876b7e28a86b61c5cc8ceed76a903a
https://github.com/ehb54/ultrascan3/commit/5e9fb44fd3876b7e28a86b61c5cc8ceed76a903a
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-03 (Thu, 03 Jul 2025)
Changed paths:
M test/utils/test_us_crypto.cpp
Log Message:
-----------
test failing test
Commit: 29b485c94b6bfd0e1f7be5ca07da8449cefe8081
https://github.com/ehb54/ultrascan3/commit/29b485c94b6bfd0e1f7be5ca07da8449cefe8081
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-03 (Thu, 03 Jul 2025)
Changed paths:
M test/utils/test_us_crypto.cpp
Log Message:
-----------
disabled failing test
Commit: 9f15926c85f745d67b489772eb640400a916ad92
https://github.com/ehb54/ultrascan3/commit/9f15926c85f745d67b489772eb640400a916ad92
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-05 (Sat, 05 Jul 2025)
Changed paths:
M CMakeLists.txt
M test-docker.sh
A test/README.md
Log Message:
-----------
fixed comment, added readme
Commit: 3212f77418d1cedfe0dbc2db7f9d1a47a672d8f4
https://github.com/ehb54/ultrascan3/commit/3212f77418d1cedfe0dbc2db7f9d1a47a672d8f4
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-06 (Sun, 06 Jul 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
code analysis
Commit: a9025670cc855940cf159141a10a5e0648312794
https://github.com/ehb54/ultrascan3/commit/a9025670cc855940cf159141a10a5e0648312794
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-06 (Sun, 06 Jul 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
code analysis removed sudo
Commit: bbdf69b0fef6c0be255ef3bdecfba8597797c668
https://github.com/ehb54/ultrascan3/commit/bbdf69b0fef6c0be255ef3bdecfba8597797c668
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-06 (Sun, 06 Jul 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
A .github/workflows/static-analysis.yml
Log Message:
-----------
moved static analysis to separate file
Commit: d208f8e88de47207cc309f9b9e25483681973e03
https://github.com/ehb54/ultrascan3/commit/d208f8e88de47207cc309f9b9e25483681973e03
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-06 (Sun, 06 Jul 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
fix iwyu
Commit: 3df3a60b840e7b78e9c6cbf9fe581f08a77f3d6e
https://github.com/ehb54/ultrascan3/commit/3df3a60b840e7b78e9c6cbf9fe581f08a77f3d6e
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-09 (Wed, 09 Jul 2025)
Changed paths:
R doc/manual/README
A doc/manual/README.md
Log Message:
-----------
update manual creation instructions
Commit: cbf13444f00522dfc1c7ba1dc91c9ba64c39e782
https://github.com/ehb54/ultrascan3/commit/cbf13444f00522dfc1c7ba1dc91c9ba64c39e782
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-09 (Wed, 09 Jul 2025)
Changed paths:
M test/README.md
Log Message:
-----------
update manual creation instructions
Commit: a65be797990b6aa12a17b160b052482c930fb9ce
https://github.com/ehb54/ultrascan3/commit/a65be797990b6aa12a17b160b052482c930fb9ce
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-09 (Wed, 09 Jul 2025)
Changed paths:
M doc/manual/README.md
Log Message:
-----------
update manual creation instructions
Commit: 0ce7f8bbe5702044fddc573c6c7ea2002b72510d
https://github.com/ehb54/ultrascan3/commit/0ce7f8bbe5702044fddc573c6c7ea2002b72510d
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-13 (Sun, 13 Jul 2025)
Changed paths:
M CMakeLists.txt
M admin/test/docker/Dockerfile
A gui/CMakeLists.txt
M gui/us_abstractrotor_gui.cpp
M gui/us_buffer_gui.cpp
M gui/us_data_loader.cpp
M gui/us_failed_gmp_run_gui.cpp
M gui/us_load_auc.cpp
M gui/us_loadable_noise.cpp
M gui/us_model_gui.cpp
M gui/us_model_gui.h
M gui/us_model_loader.cpp
M gui/us_model_loader.h
M gui/us_noise_loader.h
M gui/us_project_gui.cpp
M gui/us_rotor_gui.cpp
M gui/us_solution_gui.cpp
M programs/us/us.cpp
M programs/us_2dsa/us_2dsa.cpp
M programs/us_astfem_sim/us_clipdata.cpp
M programs/us_config/us_database.cpp
M programs/us_config/us_xpnhost_db.cpp
M programs/us_config/us_xpnhost_db.h
M programs/us_convert/us_get_run.cpp
M programs/us_edit/us_edit.h
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_ga_init/us_solutedata.cpp
M programs/us_integral/us_integral.cpp
M programs/us_manage_data/us_manage_data.cpp
M programs/us_mwlr_viewer/us_mwl_run.cpp
M programs/us_pcsa/us_adv_analysis_pc.cpp
M programs/us_pcsa/us_analysis_control_pc.cpp
M programs/us_pcsa/us_mrecs_loader.cpp
M programs/us_pcsa/us_mrecs_loader.h
M programs/us_pcsa/us_pcsa.cpp
M programs/us_pcsa/us_pcsa_process.cpp
M programs/us_pcsa/us_rpscan.cpp
M programs/us_ramp/us_experiment_gui_ra.cpp
M programs/us_ramp/us_experiment_ra.cpp
M programs/us_ramp/us_experiment_ra.h
M programs/us_ramp/us_get_dbrun_ra.cpp
M programs/us_ramp/us_ramp_gui.cpp
M programs/us_reporter/us_reporter.cpp
M programs/us_xpn_viewer/us_xpn_run_auc.cpp
M programs/us_xpn_viewer/us_xpn_run_raw.cpp
M test-docker.sh
M test/common/qt_test_base.h
M test/utils/CMakeLists.txt
M test/utils/mock/mock_us_db2.h
M test/utils/test_mock_us_db2.cpp
R test/utils/test_mock_us_db2.h
M test/utils/test_us_ana_profile.cpp
R test/utils/test_us_ana_profile.h
M test/utils/test_us_analyte.cpp
R test/utils/test_us_analyte.h
M test/utils/test_us_astfem_math.cpp
R test/utils/test_us_astfem_math.h
M test/utils/test_us_astfem_rsa.cpp
R test/utils/test_us_astfem_rsa.h
M test/utils/test_us_buffer.cpp
M test/utils/test_us_crc.cpp
R test/utils/test_us_crc.h
M test/utils/test_us_crypto.cpp
R test/utils/test_us_crypto.h
M test/utils/test_us_dataIO.cpp
R test/utils/test_us_dataIO.h
M test/utils/test_us_datafiles.cpp
R test/utils/test_us_datafiles.h
M test/utils/test_us_db2.cpp
R test/utils/test_us_db2.h
M test/utils/test_us_math2.cpp
R test/utils/test_us_math2.h
M test/utils/test_us_matrix.cpp
R test/utils/test_us_matrix.h
M test/utils/test_us_memory.cpp
R test/utils/test_us_memory.h
M test/utils/test_us_model.cpp
R test/utils/test_us_model.h
M test/utils/test_us_project.cpp
R test/utils/test_us_project.h
M test/utils/test_us_settings.cpp
R test/utils/test_us_settings.h
M test/utils/test_us_simparms.cpp
R test/utils/test_us_simparms.h
M test/utils/test_us_stiffbase.cpp
R test/utils/test_us_stiffbase.h
M test/utils/test_us_time_state.cpp
R test/utils/test_us_time_state.h
A test/utils/test_us_timer.cpp
M test/utils/test_us_util.cpp
R test/utils/test_us_util.h
M test/utils/test_us_utils_main.cpp
A test/utils/test_us_vector.cpp
M us_somo/develop/include/us_zeno_cxx.h
M us_somo/develop/include/us_zeno_cxx_nf.h
M utils/CMakeLists.txt
M utils/us_analyte.cpp
M utils/us_analyte.h
M utils/us_astfem_rsa.cpp
M utils/us_buffer.cpp
M utils/us_buffer.h
M utils/us_cfa_data.cpp
M utils/us_dataIO.cpp
M utils/us_eprofile.cpp
M utils/us_eprofile.h
M utils/us_hardware.cpp
M utils/us_hardware.h
M utils/us_lamm_astfvm.cpp
M utils/us_model.cpp
M utils/us_model.h
M utils/us_noise.cpp
M utils/us_noise.h
M utils/us_report.cpp
M utils/us_report.h
M utils/us_rotor.cpp
M utils/us_rotor.h
M utils/us_simparms.cpp
M utils/us_simparms.h
M utils/us_solution.cpp
M utils/us_solution.h
M utils/us_solution_vals.cpp
M utils/us_solution_vals.h
M utils/us_solve_sim.cpp
M utils/us_solve_sim.h
M utils/us_time_state.cpp
M utils/us_time_state.h
M utils/us_xpn_data.cpp
Log Message:
-----------
ius_db2 build
Commit: 76e2cf6ae4e764993cbd9d37d1bd086413514e3d
https://github.com/ehb54/ultrascan3/commit/76e2cf6ae4e764993cbd9d37d1bd086413514e3d
Author: aaron <aaron at aucsolutions.com>
Date: 2025-08-27 (Wed, 27 Aug 2025)
Changed paths:
M .gitignore
M test-docker.sh
A test/README
R test/README.md
M test/utils/test_us_ana_profile.cpp
M test/utils/test_us_analyte.cpp
M test/utils/test_us_astfem_math.cpp
M test/utils/test_us_astfem_rsa.cpp
M test/utils/test_us_buffer.cpp
M test/utils/test_us_crypto.cpp
M test/utils/test_us_datafiles.cpp
M test/utils/test_us_math2.cpp
M test/utils/test_us_matrix.cpp
M test/utils/test_us_memory.cpp
M test/utils/test_us_model.cpp
M test/utils/test_us_project.cpp
M test/utils/test_us_settings.cpp
M test/utils/test_us_stiffbase.cpp
M test/utils/test_us_time_state.cpp
M test/utils/test_us_util.cpp
Log Message:
-----------
working set of util unit tests
Commit: 3a4240895ec21be113a64f6d852aa70cdc0f9455
https://github.com/ehb54/ultrascan3/commit/3a4240895ec21be113a64f6d852aa70cdc0f9455
Author: aaron <aaron at aucsolutions.com>
Date: 2025-08-27 (Wed, 27 Aug 2025)
Changed paths:
M gui/us_sim_params_gui.cpp
M gui/us_sim_params_gui.h
M gui/us_tmst_plot.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_astfem_sim/us_astfem_sim.h
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_edit/us_edit.cpp
M programs/us_fematch/us_resplot_fem.cpp
M programs/us_fit_meniscus/us_fit_meniscus.cpp
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
M utils/us_simparms.cpp
M utils/us_simparms.h
Log Message:
-----------
Merge remote-tracking branch 'origin/master' into aaron-dev-test-utils
# Conflicts:
# utils/us_simparms.cpp
Commit: eb5398d2831269197d566f36400b5f80c87ac2b1
https://github.com/ehb54/ultrascan3/commit/eb5398d2831269197d566f36400b5f80c87ac2b1
Author: aaron <aaron at aucsolutions.com>
Date: 2025-08-27 (Wed, 27 Aug 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_ga_init/us_solutedata.cpp
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M us_somo/develop/include/us3_defines.h
A us_somo/develop/include/us_band_broaden.h
M us_somo/develop/include/us_hydrodyn.h
M us_somo/develop/include/us_hydrodyn_cluster_best.h
M us_somo/develop/include/us_hydrodyn_dad.h
M us_somo/develop/include/us_hydrodyn_hydro.h
M us_somo/develop/include/us_hydrodyn_hydro_zeno.h
M us_somo/develop/include/us_hydrodyn_mals.h
M us_somo/develop/include/us_hydrodyn_saxs.h
M us_somo/develop/include/us_hydrodyn_saxs_buffer.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc_ciq.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc_fit.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc_movie.h
M us_somo/develop/include/us_json.h
M us_somo/develop/include/us_matrix.h
M us_somo/develop/include/us_multi_column.h
M us_somo/develop/include/us_pfortran.h
M us_somo/develop/include/us_saxs_util.h
M us_somo/develop/include/us_tar.h
M us_somo/develop/include/us_tnt_jama.h
M us_somo/develop/include/us_unicode.h
M us_somo/develop/libus_somo.pro
M us_somo/develop/src/qwt/scrollzoomer.cpp
M us_somo/develop/src/us3i_color.cpp
M us_somo/develop/src/us3i_util.cpp
A us_somo/develop/src/us_band_broaden.cpp
M us_somo/develop/src/us_color.cpp
M us_somo/develop/src/us_config_gui.cpp
M us_somo/develop/src/us_dirhist.cpp
M us_somo/develop/src/us_ffd.cpp
M us_somo/develop/src/us_font.cpp
M us_somo/develop/src/us_fractal_dimension.cpp
M us_somo/develop/src/us_help.cpp
M us_somo/develop/src/us_hydrodyn.cpp
M us_somo/develop/src/us_hydrodyn_addatom.cpp
M us_somo/develop/src/us_hydrodyn_addhybrid.cpp
M us_somo/develop/src/us_hydrodyn_addresidue.cpp
M us_somo/develop/src/us_hydrodyn_addsaxs.cpp
M us_somo/develop/src/us_hydrodyn_batch.cpp
M us_somo/develop/src/us_hydrodyn_bd_core.cpp
M us_somo/develop/src/us_hydrodyn_bd_load_results_opts.cpp
M us_somo/develop/src/us_hydrodyn_bd_options.cpp
M us_somo/develop/src/us_hydrodyn_beads.cpp
M us_somo/develop/src/us_hydrodyn_beads_load.cpp
M us_somo/develop/src/us_hydrodyn_cluster.cpp
M us_somo/develop/src/us_hydrodyn_cluster_advanced.cpp
M us_somo/develop/src/us_hydrodyn_cluster_best.cpp
M us_somo/develop/src/us_hydrodyn_cluster_results.cpp
M us_somo/develop/src/us_hydrodyn_cluster_status.cpp
M us_somo/develop/src/us_hydrodyn_cluster_submit.cpp
M us_somo/develop/src/us_hydrodyn_core.cpp
M us_somo/develop/src/us_hydrodyn_dad.cpp
M us_somo/develop/src/us_hydrodyn_dad_gg.cpp
M us_somo/develop/src/us_hydrodyn_dad_gui.cpp
M us_somo/develop/src/us_hydrodyn_dad_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_bb.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_guinier.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_powerfit.cpp
M us_somo/develop/src/us_hydrodyn_dad_movie.cpp
M us_somo/develop/src/us_hydrodyn_dad_options.cpp
M us_somo/develop/src/us_hydrodyn_dad_parameters.cpp
M us_somo/develop/src/us_hydrodyn_dad_plots.cpp
M us_somo/develop/src/us_hydrodyn_dad_svd.cpp
M us_somo/develop/src/us_hydrodyn_dad_util.cpp
M us_somo/develop/src/us_hydrodyn_dammin_opts.cpp
M us_somo/develop/src/us_hydrodyn_fractal_dimension.cpp
M us_somo/develop/src/us_hydrodyn_grid_atob.cpp
M us_somo/develop/src/us_hydrodyn_grpy.cpp
M us_somo/develop/src/us_hydrodyn_hydrate.cpp
M us_somo/develop/src/us_hydrodyn_hydrate_align.cpp
M us_somo/develop/src/us_hydrodyn_hydro.cpp
M us_somo/develop/src/us_hydrodyn_hydro_zeno.cpp
M us_somo/develop/src/us_hydrodyn_info.cpp
M us_somo/develop/src/us_hydrodyn_load.cpp
M us_somo/develop/src/us_hydrodyn_mals.cpp
M us_somo/develop/src/us_hydrodyn_mals_gg.cpp
M us_somo/develop/src/us_hydrodyn_mals_gui.cpp
M us_somo/develop/src/us_hydrodyn_mals_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_mals_modes_bb.cpp
M us_somo/develop/src/us_hydrodyn_mals_modes_guinier.cpp
M us_somo/develop/src/us_hydrodyn_mals_movie.cpp
M us_somo/develop/src/us_hydrodyn_mals_options.cpp
M us_somo/develop/src/us_hydrodyn_mals_plots.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_gg.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_gui.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_bb.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_guinier.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_scale.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_movie.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_options.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_plots.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_svd.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_util.cpp
M us_somo/develop/src/us_hydrodyn_mals_svd.cpp
M us_somo/develop/src/us_hydrodyn_mals_util.cpp
M us_somo/develop/src/us_hydrodyn_misc.cpp
M us_somo/develop/src/us_hydrodyn_other.cpp
M us_somo/develop/src/us_hydrodyn_pat.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool_merge.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool_util.cpp
M us_somo/develop/src/us_hydrodyn_results.cpp
M us_somo/develop/src/us_hydrodyn_save.cpp
M us_somo/develop/src/us_hydrodyn_saxs.cpp
M us_somo/develop/src/us_hydrodyn_saxs_1d.cpp
M us_somo/develop/src/us_hydrodyn_saxs_2d.cpp
M us_somo/develop/src/us_hydrodyn_saxs_buffer.cpp
A us_somo/develop/src/us_hydrodyn_saxs_buffer_fit.cpp
A us_somo/develop/src/us_hydrodyn_saxs_buffer_gui.cpp
M us_somo/develop/src/us_hydrodyn_saxs_cormap.cpp
M us_somo/develop/src/us_hydrodyn_saxs_guinier.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_ciq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_fit.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_gg.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_gui.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_bb.cpp
A us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_broaden.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_wheel.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_movie.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_options.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_plots.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_svd.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_util.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_bead_model.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_residuals.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_sh.cpp
M us_somo/develop/src/us_hydrodyn_saxs_loads.cpp
M us_somo/develop/src/us_hydrodyn_saxs_mw.cpp
M us_somo/develop/src/us_hydrodyn_saxs_plots.cpp
M us_somo/develop/src/us_hydrodyn_saxs_pr.cpp
M us_somo/develop/src/us_hydrodyn_saxs_screen.cpp
M us_somo/develop/src/us_hydrodyn_script.cpp
M us_somo/develop/src/us_hydrodyn_settings.cpp
M us_somo/develop/src/us_hydrodyn_supc.cpp
M us_somo/develop/src/us_hydrodyn_util.cpp
M us_somo/develop/src/us_hydrodyn_write.cpp
M us_somo/develop/src/us_hydrodyn_zeno.cpp
M us_somo/develop/src/us_imgviewer.cpp
M us_somo/develop/src/us_json.cpp
M us_somo/develop/src/us_matrix.cpp
M us_somo/develop/src/us_plot_util.cpp
M us_somo/develop/src/us_plot_zoom.cpp
M us_somo/develop/src/us_pm_fitness.cpp
M us_somo/develop/src/us_register.cpp
M us_somo/develop/src/us_saxs_util.cpp
M us_somo/develop/src/us_saxs_util_best.cpp
M us_somo/develop/src/us_saxs_util_guinier.cpp
M us_somo/develop/src/us_saxs_util_hydrate.cpp
M us_somo/develop/src/us_saxs_util_hydrate_align.cpp
M us_somo/develop/src/us_saxs_util_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_grid_atob_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_pat_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_supc_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_zeno_hydro.cpp
M us_somo/develop/src/us_saxs_util_iqq.cpp
M us_somo/develop/src/us_saxs_util_iqq_1d.cpp
M us_somo/develop/src/us_saxs_util_iqq_bead_model.cpp
M us_somo/develop/src/us_saxs_util_iqq_pdb.cpp
M us_somo/develop/src/us_saxs_util_loads.cpp
M us_somo/develop/src/us_saxs_util_pat.cpp
M us_somo/develop/src/us_saxs_util_pm.cpp
M us_somo/develop/src/us_saxs_util_static.cpp
M us_somo/develop/src/us_tar.cpp
M us_somo/develop/src/us_util.cpp
M us_somo/develop/src/us_zeno_cxx.cpp
M us_somo/somo/doc/manual/somo/somo-Zeno_optionsNew.png
M us_somo/somo/doc/manual/somo/somo-main0new.png
M us_somo/somo/doc/manual/somo/somo-main4.png
M us_somo/somo/doc/manual/somo/somo.html
A us_somo/somo/doc/manual/somo/somo_ZENO_correction_warning.png
M us_somo/somo/doc/manual/somo/somo_cluster_config.html
M us_somo/somo/doc/manual/somo/somo_hydro_zeno.html
M utils/us_model.cpp
M utils/us_model.h
Log Message:
-----------
Merge remote-tracking branch 'origin/master' into aaron-dev-test-utils
Commit: 6c17ff96ca055f6cc43eeb2532d0eceab53580b3
https://github.com/ehb54/ultrascan3/commit/6c17ff96ca055f6cc43eeb2532d0eceab53580b3
Author: aaron <aaron at aucsolutions.com>
Date: 2025-08-27 (Wed, 27 Aug 2025)
Changed paths:
M utils/us_solution.cpp
Log Message:
-----------
set to lowercase ius_db2.h
Commit: 483c6d095b00b75710d4feeb2d9b996f0a4bd213
https://github.com/ehb54/ultrascan3/commit/483c6d095b00b75710d4feeb2d9b996f0a4bd213
Author: aaron <aaron at aucsolutions.com>
Date: 2025-08-27 (Wed, 27 Aug 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
A admin/test/cmake/hints.cmake
M admin/test/docker/Dockerfile
M test-docker.sh
Log Message:
-----------
add cmake hint file
Commit: 76997c2b070b1a6fdab90be7c72e7ae8d8e7271f
https://github.com/ehb54/ultrascan3/commit/76997c2b070b1a6fdab90be7c72e7ae8d8e7271f
Author: aaron <aaron at aucsolutions.com>
Date: 2025-08-27 (Wed, 27 Aug 2025)
Changed paths:
M utils/us_simparms.cpp
Log Message:
-----------
iusdb changes
Commit: 295b4c9f222964264a4f4f2c9890d5b9f9d61f24
https://github.com/ehb54/ultrascan3/commit/295b4c9f222964264a4f4f2c9890d5b9f9d61f24
Author: aaron <aaron at aucsolutions.com>
Date: 2025-08-27 (Wed, 27 Aug 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
M .github/workflows/static-analysis.yml
M utils/ius_db2.h
Log Message:
-----------
iusdb add qstring constuctor, turn off static analysis, move safe directory config
Commit: 4ba0f871fcfc325f8d6405a2a94f8ffdca1b09e3
https://github.com/ehb54/ultrascan3/commit/4ba0f871fcfc325f8d6405a2a94f8ffdca1b09e3
Author: aaron <aaron at aucsolutions.com>
Date: 2025-08-27 (Wed, 27 Aug 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
M gui/us_abstractrotor_gui.cpp
Log Message:
-----------
error in gui build related to iusdb2
Commit: 217485a90c5e92e0e810e5e3dfe2dac0177b8b35
https://github.com/ehb54/ultrascan3/commit/217485a90c5e92e0e810e5e3dfe2dac0177b8b35
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M CMakeLists.txt
A admin/cmake/FindQwt.cmake
A admin/cmake/us_version.h.in
R admin/test/cmake/hints.cmake
M admin/test/docker/Dockerfile
M gui/CMakeLists.txt
M gui/us_buffer_gui.cpp
M gui/us_data_loader.cpp
M gui/us_failed_gmp_run_gui.cpp
M gui/us_load_auc.cpp
M gui/us_loadable_noise.cpp
M gui/us_model_gui.cpp
M gui/us_model_loader.cpp
M gui/us_noise_loader.cpp
M gui/us_noise_loader.h
M gui/us_project_gui.cpp
M gui/us_rotor_gui.cpp
M gui/us_solution_gui.cpp
A programs/CMakeLists.txt
M programs/us/us.cpp
M programs/us/us_win_data.cpp
A programs/us_autoflow_analysis/CMakeLists.txt
A programs/us_com_project/CMakelists.txt
A programs/us_com_project_academic/CMakeLists.txt
M programs/us_config/us_database.cpp
M programs/us_config/us_xpnhost_db.cpp
M programs/us_convert/us_select_triples.h
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_ddist_combine.h
M programs/us_edit/us_edit.cpp
A programs/us_experiment/CMakeLists.txt
A programs/us_fematch/CMakeLists.txt
A programs/us_fit_meniscus/CMakeLists.txt
A programs/us_mwl_species_fit/CMakeLists.txt
M programs/us_pcsa/us_pcsa.cpp
A programs/us_protocol_dev/CMakeLists.txt
A programs/us_query_rmsd/CMakeLists.txt
M programs/us_ramp/us_experiment_gui_ra.cpp
M programs/us_ramp/us_get_dbrun_ra.cpp
M programs/us_ramp/us_ramp_gui.cpp
A programs/us_reporter_gmp/CMakeLists.txt
M test-docker.sh
M test/utils/CMakeLists.txt
M test/utils/test_us_astfem_rsa.cpp
M test/utils/test_us_buffer.cpp
M test/utils/test_us_db2.cpp
M utils/CMakeLists.txt
Log Message:
-----------
error in build related to iusdb2, cmake build for programs, and working unit tests
Commit: 8401655782f10eb593ea8537ea59378e3da8f03b
https://github.com/ehb54/ultrascan3/commit/8401655782f10eb593ea8537ea59378e3da8f03b
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
A .github/workflows/unit-tests.yml
Log Message:
-----------
move unit tests trigger to separate file
Commit: 73021e71e98437f3583fc6edcaf0fe2faf72d5fd
https://github.com/ehb54/ultrascan3/commit/73021e71e98437f3583fc6edcaf0fe2faf72d5fd
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M programs/us_com_project/CMakelists.txt
A qwtplot3d/CMakeLists.txt
Log Message:
-----------
add us_com_project cmakelists
Commit: c9030ec25f5d2ce4547c140beaf0d06baa785f4a
https://github.com/ehb54/ultrascan3/commit/c9030ec25f5d2ce4547c140beaf0d06baa785f4a
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
A programs/us_com_project/CMakeLists.txt
R programs/us_com_project/CMakelists.txt
Log Message:
-----------
fix us_com_project cmakelists had lowercase l in name
Commit: 7edcb7cb1815454a3c1517671b8f46ba157b7fd5
https://github.com/ehb54/ultrascan3/commit/7edcb7cb1815454a3c1517671b8f46ba157b7fd5
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
modifed static-analysis.yml should not run and not send email
Commit: a414cfc8f6a9b899f987a41925b89b2a948b954a
https://github.com/ehb54/ultrascan3/commit/a414cfc8f6a9b899f987a41925b89b2a948b954a
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
modifed static-analysis.yml running but non-failing
Commit: 09d7e2075e6ba517445079e50e2410866d36ef05
https://github.com/ehb54/ultrascan3/commit/09d7e2075e6ba517445079e50e2410866d36ef05
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
modifed static-analysis.yml install libqwt-qt5-dev
Commit: 6014d3b78be1f58f196982b8e963eb9a1fd10650
https://github.com/ehb54/ultrascan3/commit/6014d3b78be1f58f196982b8e963eb9a1fd10650
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
modifed static-analysis.yml use cmake
Commit: 86802e7c8b63d5dafae200d92ab4edd449a76122
https://github.com/ehb54/ultrascan3/commit/86802e7c8b63d5dafae200d92ab4edd449a76122
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
modifed static-analysis.yml use cmake
Commit: 1c1fe3aebbc7885934e26733499fdc6e3443cd25
https://github.com/ehb54/ultrascan3/commit/1c1fe3aebbc7885934e26733499fdc6e3443cd25
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
modifed static-analysis.yml remove format check
Commit: 545dd0c591ceb5f40b85403fe9d72a8dc2079608
https://github.com/ehb54/ultrascan3/commit/545dd0c591ceb5f40b85403fe9d72a8dc2079608
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-02 (Tue, 02 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
fix static-analysis.yml only check changed files
Commit: ff38446e4155e613f61b9ccfdadc5141796dba1d
https://github.com/ehb54/ultrascan3/commit/ff38446e4155e613f61b9ccfdadc5141796dba1d
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-02 (Tue, 02 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
fix static-analysis.yml env variable handling
Commit: 44dc6b5ad0d3a3b1288a71a6096e71bcf767d2fb
https://github.com/ehb54/ultrascan3/commit/44dc6b5ad0d3a3b1288a71a6096e71bcf767d2fb
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-02 (Tue, 02 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
fix static-analysis.yml env variable handling
Commit: ef4c4e8e42954ff80a0ef6df92e9b990b7edaa68
https://github.com/ehb54/ultrascan3/commit/ef4c4e8e42954ff80a0ef6df92e9b990b7edaa68
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-02 (Tue, 02 Sep 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
M .github/workflows/static-analysis.yml
M .github/workflows/unit-tests.yml
Log Message:
-----------
mod workflow triggers to push or pr on master only
Commit: 42e26337f0dd52027b91e41ba3af0f9e1b626a24
https://github.com/ehb54/ultrascan3/commit/42e26337f0dd52027b91e41ba3af0f9e1b626a24
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-04 (Thu, 04 Sep 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
M .gitignore
R admin/codeql/custom-queries/cpp/codeql-pack.yml
R admin/codeql/custom-queries/cpp/find-unused-functions.ql
M gui/CMakeLists.txt
M gui/us_buffer_gui.cpp
M gui/us_data_loader.cpp
M gui/us_load_auc.cpp
M gui/us_loadable_noise.cpp
R gui/us_model_editor.cpp
R gui/us_model_editor.h
M gui/us_model_gui.cpp
M gui/us_model_loader.h
M gui/us_noise_loader.h
M programs/us_2dsa/us_2dsa.cpp
M programs/us_edit/us_edit.h
M utils/us_xpn_data.cpp
Log Message:
-----------
code cleanup before PR review
Commit: 895bcceea66cf95608da4f456620659d8e9517d5
https://github.com/ehb54/ultrascan3/commit/895bcceea66cf95608da4f456620659d8e9517d5
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-09-04 (Thu, 04 Sep 2025)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M utils/us_ana_profile.cpp
Log Message:
-----------
Merge pull request #260 from ehb54/master
commit update
Commit: 19e27c3ec7093c10f143441101c85d0af09b12ac
https://github.com/ehb54/ultrascan3/commit/19e27c3ec7093c10f143441101c85d0af09b12ac
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-05 (Fri, 05 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
mod: better reporting of critical issues
Commit: 3d25a66f7dcdd4e3a849f5ea31ae253f22c303be
https://github.com/ehb54/ultrascan3/commit/3d25a66f7dcdd4e3a849f5ea31ae253f22c303be
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-05 (Fri, 05 Sep 2025)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M utils/us_ana_profile.cpp
Log Message:
-----------
Merge remote-tracking branch 'origin/aaron-dev-test-utils' into aaron-dev-test-utils
Commit: eaf7d5bc8dae71e71e890cbec10deb318fe0862c
https://github.com/ehb54/ultrascan3/commit/eaf7d5bc8dae71e71e890cbec10deb318fe0862c
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-05 (Fri, 05 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
mod: artifact upload fix
Commit: f04888d7116e9c5498dd5a316307e9f4dc238d40
https://github.com/ehb54/ultrascan3/commit/f04888d7116e9c5498dd5a316307e9f4dc238d40
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-06 (Sat, 06 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
fix: critical static analysis only
Commit: d9ed24af5742fb54910d7c1d9873b57c528b4661
https://github.com/ehb54/ultrascan3/commit/d9ed24af5742fb54910d7c1d9873b57c528b4661
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-06 (Sat, 06 Sep 2025)
Changed paths:
M CMakeLists.txt
M admin/cmake/FindQwt.cmake
M gui/CMakeLists.txt
M programs/us_autoflow_analysis/CMakeLists.txt
M programs/us_com_project/CMakeLists.txt
M programs/us_com_project_academic/CMakeLists.txt
M programs/us_experiment/CMakeLists.txt
M programs/us_fematch/CMakeLists.txt
M programs/us_fit_meniscus/CMakeLists.txt
M programs/us_mwl_species_fit/CMakeLists.txt
M programs/us_protocol_dev/CMakeLists.txt
M programs/us_query_rmsd/CMakeLists.txt
M programs/us_reporter_gmp/CMakeLists.txt
M qwtplot3d/CMakeLists.txt
M test/utils/test_us_settings.cpp
M utils/CMakeLists.txt
Log Message:
-----------
mod: address review comments
Commit: dd3e9be9669f28156c33235c7e73db3040c614a5
https://github.com/ehb54/ultrascan3/commit/dd3e9be9669f28156c33235c7e73db3040c614a5
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M CMakeLists.txt
Log Message:
-----------
Update CMakeLists.txt
Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Commit: 93c11d987df52db6a1d9484f4f49a7acb54bd4dc
https://github.com/ehb54/ultrascan3/commit/93c11d987df52db6a1d9484f4f49a7acb54bd4dc
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M CMakeLists.txt
Log Message:
-----------
Update CMakeLists.txt
Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Commit: ea99232fad84d9c9e2e785ee18794694bb22b883
https://github.com/ehb54/ultrascan3/commit/ea99232fad84d9c9e2e785ee18794694bb22b883
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M utils/CMakeLists.txt
Log Message:
-----------
Update utils/CMakeLists.txt
Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Commit: a1344544e53b2158a855ac3ddb3296bbb15d21e0
https://github.com/ehb54/ultrascan3/commit/a1344544e53b2158a855ac3ddb3296bbb15d21e0
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M gui/CMakeLists.txt
Log Message:
-----------
Update gui/CMakeLists.txt
Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Commit: 6115f78b236f317ecc7ce852c9541d8ac10084e4
https://github.com/ehb54/ultrascan3/commit/6115f78b236f317ecc7ce852c9541d8ac10084e4
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M test/utils/CMakeLists.txt
Log Message:
-----------
Update test/utils/CMakeLists.txt
Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Commit: e87ab944bf93815dda5842e3dadee3249c11a52c
https://github.com/ehb54/ultrascan3/commit/e87ab944bf93815dda5842e3dadee3249c11a52c
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-25 (Thu, 25 Sep 2025)
Changed paths:
M programs/CMakeLists.txt
M test-docker.sh
M test/utils/CMakeLists.txt
M test/utils/test_us_vector.cpp
Log Message:
-----------
fix: cmake collision during build
Commit: 4a401e5be566119b5510674930f3b4365211a052
https://github.com/ehb54/ultrascan3/commit/4a401e5be566119b5510674930f3b4365211a052
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-25 (Thu, 25 Sep 2025)
Changed paths:
M programs/CMakeLists.txt
Log Message:
-----------
fix: add QWT to us_program_common
Commit: 3eb9ae51c6a5f7fc763508aa6e322281d3540f3b
https://github.com/ehb54/ultrascan3/commit/3eb9ae51c6a5f7fc763508aa6e322281d3540f3b
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-02 (Thu, 02 Oct 2025)
Changed paths:
M test/utils/CMakeLists.txt
Log Message:
-----------
fix: duplicate include removed
Commit: 8b4d2dc93db3c9ce00f4cfcebac25a50f25ce7f2
https://github.com/ehb54/ultrascan3/commit/8b4d2dc93db3c9ce00f4cfcebac25a50f25ce7f2
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-07 (Tue, 07 Oct 2025)
Changed paths:
M CMakeLists.txt
M programs/CMakeLists.txt
M programs/us_autoflow_analysis/CMakeLists.txt
M programs/us_fematch/CMakeLists.txt
M programs/us_manage_data/us_manage_data.cpp
M programs/us_ramp/us_ramp_gui.cpp
M qwtplot3d/CMakeLists.txt
M test/utils/test_us_astfem_math.cpp
R test/utils/test_us_astfem_rsa.cpp
Log Message:
-----------
Consolidated commit after cleanup
Commit: 934f494e4683d95677c5a7051705426df529cf13
https://github.com/ehb54/ultrascan3/commit/934f494e4683d95677c5a7051705426df529cf13
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-08 (Wed, 08 Oct 2025)
Changed paths:
A admin/pam/pam_no_ad/Makefile
A admin/pam/pam_no_ad/README.md
A admin/pam/pam_no_ad/files/mariadb
A admin/pam/pam_no_ad/files/php
A admin/pam/pam_no_ad/files/sssd.conf
A admin/pam/pam_no_ad/files/system-auth-nosss
A admin/pam/pam_no_ad/pam_auth_pamtester.php
A admin/pam/pam_no_ad/pam_auth_test.php
M doc/manual/advanced_config.body
M gui/us_analysis_base2.cpp
M gui/us_model_loader.cpp
M gui/us_scan_excl_gui.cpp
M gui/us_scan_excl_gui.h
M programs/us_2dsa/us_2dsa.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_fematch/us_resplot_fem.cpp
M programs/us_fit_meniscus/us_fit_meniscus.cpp
M programs/us_fit_meniscus/us_fit_meniscus_main.cpp
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M programs/us_integral/us_integral.cpp
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
M utils/us_ana_profile.cpp
M utils/us_ana_profile.h
M utils/us_astfem_math.cpp
M utils/us_astfem_math.h
Log Message:
-----------
Merge remote-tracking branch 'origin/master' into aaron-dev-test-utils
Commit: 4e54cb0bd0e5eda0aebea648780b89b67b47d482
https://github.com/ehb54/ultrascan3/commit/4e54cb0bd0e5eda0aebea648780b89b67b47d482
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-10-08 (Wed, 08 Oct 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
A .github/workflows/static-analysis.yml
A .github/workflows/unit-tests.yml
M .gitignore
M CMakeLists.txt
A admin/cmake/FindQwt.cmake
A admin/cmake/us_version.h.in
A admin/test/docker/Dockerfile
R doc/manual/README
A doc/manual/README.md
A gui/CMakeLists.txt
M gui/us_abstractrotor_gui.cpp
M gui/us_buffer_gui.cpp
M gui/us_data_loader.cpp
M gui/us_failed_gmp_run_gui.cpp
M gui/us_load_auc.cpp
M gui/us_loadable_noise.cpp
R gui/us_model_editor.cpp
R gui/us_model_editor.h
M gui/us_model_gui.cpp
M gui/us_model_gui.h
M gui/us_model_loader.cpp
M gui/us_model_loader.h
M gui/us_noise_loader.cpp
M gui/us_noise_loader.h
M gui/us_project_gui.cpp
M gui/us_rotor_gui.cpp
M gui/us_solution_gui.cpp
A programs/CMakeLists.txt
M programs/us/us.cpp
M programs/us/us_win_data.cpp
M programs/us_2dsa/us_2dsa.cpp
M programs/us_astfem_sim/us_clipdata.cpp
A programs/us_autoflow_analysis/CMakeLists.txt
A programs/us_com_project/CMakeLists.txt
A programs/us_com_project_academic/CMakeLists.txt
M programs/us_config/us_database.cpp
M programs/us_config/us_xpnhost_db.cpp
M programs/us_config/us_xpnhost_db.h
M programs/us_convert/us_get_run.cpp
M programs/us_convert/us_select_triples.h
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_ddist_combine.h
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
A programs/us_experiment/CMakeLists.txt
M programs/us_experiment/us_experiment_gui_optima.cpp
A programs/us_fematch/CMakeLists.txt
M programs/us_fematch/us_fematch.cpp
A programs/us_fit_meniscus/CMakeLists.txt
M programs/us_ga_init/us_solutedata.cpp
M programs/us_integral/us_integral.cpp
M programs/us_manage_data/us_manage_data.cpp
A programs/us_mwl_species_fit/CMakeLists.txt
M programs/us_mwlr_viewer/us_mwl_run.cpp
M programs/us_pcsa/us_adv_analysis_pc.cpp
M programs/us_pcsa/us_analysis_control_pc.cpp
M programs/us_pcsa/us_mrecs_loader.cpp
M programs/us_pcsa/us_mrecs_loader.h
M programs/us_pcsa/us_pcsa.cpp
M programs/us_pcsa/us_pcsa_process.cpp
M programs/us_pcsa/us_rpscan.cpp
A programs/us_protocol_dev/CMakeLists.txt
A programs/us_query_rmsd/CMakeLists.txt
M programs/us_ramp/us_experiment_gui_ra.cpp
M programs/us_ramp/us_experiment_ra.cpp
M programs/us_ramp/us_experiment_ra.h
M programs/us_ramp/us_get_dbrun_ra.cpp
M programs/us_ramp/us_ramp_gui.cpp
M programs/us_reporter/us_reporter.cpp
A programs/us_reporter_gmp/CMakeLists.txt
M programs/us_xpn_viewer/us_xpn_run_auc.cpp
M programs/us_xpn_viewer/us_xpn_run_raw.cpp
A qwtplot3d/CMakeLists.txt
A test-docker.sh
A test/README
A test/common/qt_test_base.cpp
A test/common/qt_test_base.h
M test/utils/CMakeLists.txt
A test/utils/mock/mock_us_db2.h
A test/utils/test_mock_us_db2.cpp
A test/utils/test_us_ana_profile.cpp
A test/utils/test_us_analyte.cpp
A test/utils/test_us_astfem_math.cpp
A test/utils/test_us_buffer.cpp
A test/utils/test_us_crc.cpp
A test/utils/test_us_crypto.cpp
A test/utils/test_us_dataIO.cpp
M test/utils/test_us_datafiles.cpp
R test/utils/test_us_datafiles.h
A test/utils/test_us_db2.cpp
A test/utils/test_us_math2.cpp
A test/utils/test_us_matrix.cpp
A test/utils/test_us_memory.cpp
A test/utils/test_us_model.cpp
A test/utils/test_us_project.cpp
A test/utils/test_us_settings.cpp
R test/utils/test_us_simparams.cpp
R test/utils/test_us_simparams.h
A test/utils/test_us_simparms.cpp
A test/utils/test_us_stiffbase.cpp
A test/utils/test_us_time_state.cpp
A test/utils/test_us_timer.cpp
M test/utils/test_us_util.cpp
R test/utils/test_us_util.h
M test/utils/test_us_utils_main.cpp
A test/utils/test_us_vector.cpp
M us_somo/develop/include/us_zeno_cxx.h
M us_somo/develop/include/us_zeno_cxx_nf.h
M utils/CMakeLists.txt
A utils/ius_db2.h
M utils/us_ana_profile.cpp
M utils/us_analyte.cpp
M utils/us_analyte.h
M utils/us_astfem_rsa.cpp
M utils/us_buffer.cpp
M utils/us_buffer.h
M utils/us_cfa_data.cpp
M utils/us_dataIO.cpp
M utils/us_dataIO.h
M utils/us_db2.cpp
M utils/us_db2.h
M utils/us_eprofile.cpp
M utils/us_eprofile.h
M utils/us_hardware.cpp
M utils/us_hardware.h
M utils/us_lamm_astfvm.cpp
M utils/us_model.cpp
M utils/us_model.h
M utils/us_noise.cpp
M utils/us_noise.h
M utils/us_project.cpp
M utils/us_project.h
M utils/us_report.cpp
M utils/us_report.h
M utils/us_rotor.cpp
M utils/us_rotor.h
M utils/us_simparms.cpp
M utils/us_simparms.h
M utils/us_solution.cpp
M utils/us_solution.h
M utils/us_solution_vals.cpp
M utils/us_solution_vals.h
M utils/us_solve_sim.cpp
M utils/us_solve_sim.h
M utils/us_time_state.cpp
M utils/us_time_state.h
Log Message:
-----------
Merge pull request #234 from ehb54/aaron-dev-test-utils
Add: google mock framework, static code analysis
Compare: https://github.com/ehb54/ultrascan3/compare/d62e7b57ef0e...4e54cb0bd0e5
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