[us-commits] [ehb54/ultrascan3] af1a5c: Additional Unit Testing us_ana_profile, us_crc, us...
Lukas Dobler
noreply at github.com
Sat Oct 11 02:07:57 MDT 2025
Branch: refs/heads/lukas/us_xpn_viewer_timestate
Home: https://github.com/ehb54/ultrascan3
Commit: af1a5c8bc4252ae4bf9c3467711811c2f536d72f
https://github.com/ehb54/ultrascan3/commit/af1a5c8bc4252ae4bf9c3467711811c2f536d72f
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M CMakeLists.txt
M test/utils/CMakeLists.txt
A test/utils/test_us_ana_profile.cpp
A test/utils/test_us_ana_profile.h
A test/utils/test_us_crc.cpp
A test/utils/test_us_crc.h
A test/utils/test_us_crypto.cpp
A test/utils/test_us_crypto.h
A test/utils/test_us_dataIO.cpp
A test/utils/test_us_dataIO.h
A test/utils/test_us_math2.cpp
A test/utils/test_us_math2.h
A test/utils/test_us_matrix.cpp
A test/utils/test_us_matrix.h
M test/utils/test_us_utils_main.cpp
M utils/CMakeLists.txt
M utils/us_ana_profile.cpp
Log Message:
-----------
Additional Unit Testing us_ana_profile, us_crc, us_crypto, us_dataio, us_math2, and us_matrix.
Commit: 1408abf68cb2d299a8ad20905a1898d9f12c0958
https://github.com/ehb54/ultrascan3/commit/1408abf68cb2d299a8ad20905a1898d9f12c0958
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M CMakeLists.txt
M test/utils/CMakeLists.txt
M test/utils/test_us_crc.cpp
M test/utils/test_us_crc.h
M test/utils/test_us_math2.cpp
M test/utils/test_us_math2.h
M test/utils/test_us_matrix.cpp
A test/utils/test_us_simparms.cpp
A test/utils/test_us_simparms.h
M test/utils/test_us_utils_main.cpp
M utils/CMakeLists.txt
Log Message:
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Tests pass locally except for TestUSMath2::test_linefit() and TestUSAnaProfile::testEqualityOperator() which have issues submitted to resolve.
Commit: f87d9a2ed4bbc9a4d91dd3543dbaf4b62edca765
https://github.com/ehb54/ultrascan3/commit/f87d9a2ed4bbc9a4d91dd3543dbaf4b62edca765
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M test/utils/CMakeLists.txt
A test/utils/test_us_memory.cpp
A test/utils/test_us_memory.h
A test/utils/test_us_settings.cpp
A test/utils/test_us_settings.h
A test/utils/test_us_time_state.cpp
A test/utils/test_us_time_state.h
M test/utils/test_us_utils_main.cpp
M utils/CMakeLists.txt
Log Message:
-----------
Add tests for us_memory, us_settings, and us_time_state
Commit: 4abb61bbcc128d9293b4ff30674448f285671ab1
https://github.com/ehb54/ultrascan3/commit/4abb61bbcc128d9293b4ff30674448f285671ab1
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M test/utils/CMakeLists.txt
A test/utils/test_us_analyte.cpp
A test/utils/test_us_analyte.h
A test/utils/test_us_db2.cpp
A test/utils/test_us_db2.h
M test/utils/test_us_utils_main.cpp
M utils/CMakeLists.txt
Log Message:
-----------
Add tests for us_analyte and us_db2
Commit: e9390c59f666fcc05efbd47251b28fe67c3e0b91
https://github.com/ehb54/ultrascan3/commit/e9390c59f666fcc05efbd47251b28fe67c3e0b91
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M test/utils/CMakeLists.txt
A test/utils/test_us_astfem_math.cpp
A test/utils/test_us_astfem_math.h
A test/utils/test_us_project.cpp
A test/utils/test_us_project.h
M test/utils/test_us_utils_main.cpp
M utils/CMakeLists.txt
Log Message:
-----------
Add tests for us_astfem_math and us_project
Commit: a9e23b7e83f8210188d4489c503430d9c26f97ee
https://github.com/ehb54/ultrascan3/commit/a9e23b7e83f8210188d4489c503430d9c26f97ee
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M CMakeLists.txt
M test/utils/CMakeLists.txt
A test/utils/mock/mock_us_db2.h
A test/utils/test_mock_us_db2.cpp
A test/utils/test_mock_us_db2.h
M test/utils/test_us_analyte.cpp
A test/utils/test_us_project_gtest.cpp
A test/utils/test_us_project_gtest.h
M test/utils/test_us_utils_main.cpp
M utils/us_db2.h
Log Message:
-----------
Add gtest
Commit: eaf6180d144d0c86dc4caec50879155740cc76e3
https://github.com/ehb54/ultrascan3/commit/eaf6180d144d0c86dc4caec50879155740cc76e3
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M test/utils/CMakeLists.txt
A test/utils/test_us_astfem_rsa.cpp
A test/utils/test_us_astfem_rsa.h
A test/utils/test_us_model.cpp
A test/utils/test_us_model.h
A test/utils/test_us_stiffbase.cpp
A test/utils/test_us_stiffbase.h
M utils/CMakeLists.txt
Log Message:
-----------
Add tests for us_astfem_rsa, us_model, and us_stiffbase
Commit: 824605af8d275da7234b0a9d7f3672a8c001ea43
https://github.com/ehb54/ultrascan3/commit/824605af8d275da7234b0a9d7f3672a8c001ea43
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M .github/workflows/codeql-analysis.yml
A admin/codeql/custom-queries/cpp/find-unused-functions.ql
M test/utils/CMakeLists.txt
M test/utils/mock/mock_us_db2.h
M test/utils/test_us_analyte.cpp
M test/utils/test_us_math2.cpp
M test/utils/test_us_project_gtest.cpp
M utils/us_db2.h
Log Message:
-----------
Rebase merge
Commit: 60e801e42c2edfe91afb422f4031c95eaae2d4da
https://github.com/ehb54/ultrascan3/commit/60e801e42c2edfe91afb422f4031c95eaae2d4da
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
A admin/codeql/custom-queries/cpp/codeql-pack.yml
M admin/codeql/custom-queries/cpp/find-unused-functions.ql
Log Message:
-----------
Update codeql custom query
Commit: 7b370a88e30b380b1e40382cecb82aa1310eba3f
https://github.com/ehb54/ultrascan3/commit/7b370a88e30b380b1e40382cecb82aa1310eba3f
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
A test/utils/test_us_buffer.cpp
M test/utils/test_us_datafiles.cpp
Log Message:
-----------
Add test_us_buffer.cpp
Commit: 363e32b18e6f47106c9dd75c7f1793511472a3b0
https://github.com/ehb54/ultrascan3/commit/363e32b18e6f47106c9dd75c7f1793511472a3b0
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
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Add apt-get install libmysqlclient-dev
Commit: 77a89e083d64e4c862e61b9716a1e7d1f1892df4
https://github.com/ehb54/ultrascan3/commit/77a89e083d64e4c862e61b9716a1e7d1f1892df4
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M CMakeLists.txt
Log Message:
-----------
Update to find mysql during build
Commit: 69b88e6a47d8369f97892eddcbfa839473ce9120
https://github.com/ehb54/ultrascan3/commit/69b88e6a47d8369f97892eddcbfa839473ce9120
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M test/utils/test_us_db2.cpp
M test/utils/test_us_db2.h
Log Message:
-----------
removed query test
Commit: 3f7d4721cc43cb9f79fb187ebb5aa7f15babd257
https://github.com/ehb54/ultrascan3/commit/3f7d4721cc43cb9f79fb187ebb5aa7f15babd257
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
run specific test
Commit: d84cc16735556c0d8fb706bc768a6a4dc10db9a8
https://github.com/ehb54/ultrascan3/commit/d84cc16735556c0d8fb706bc768a6a4dc10db9a8
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-03 (Tue, 03 Sep 2024)
Changed paths:
M test/utils/test_us_math2.cpp
Log Message:
-----------
test_us_math2 was updated after sigma calculation was verified.
Commit: 69b6016db937a41c6d364bda55101d76f5564bc6
https://github.com/ehb54/ultrascan3/commit/69b6016db937a41c6d364bda55101d76f5564bc6
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-06-09 (Mon, 09 Jun 2025)
Changed paths:
A admin/pam_auth_helper/README.md
A admin/pam_auth_helper/pam.d/php-helper
A admin/pam_auth_helper/pam_auth_helper.c
A admin/pam_auth_helper/pam_auth_test.php
Log Message:
-----------
PAM for linux password for php
Commit: 22b88019d6a64a92f89f361f6cfd6737cab591d9
https://github.com/ehb54/ultrascan3/commit/22b88019d6a64a92f89f361f6cfd6737cab591d9
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-06-09 (Mon, 09 Jun 2025)
Changed paths:
M admin/pam_auth_helper/README.md
Log Message:
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Update README.md
Commit: e64cf5274f1d7302ca4582ea2e138b08a870e828
https://github.com/ehb54/ultrascan3/commit/e64cf5274f1d7302ca4582ea2e138b08a870e828
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-06-09 (Mon, 09 Jun 2025)
Changed paths:
A admin/pam_auth_helper/Makefile
Log Message:
-----------
PAM for linux password for php - makefile
Commit: 56f6b69169ad4e990282f20f3531d347cdca36bf
https://github.com/ehb54/ultrascan3/commit/56f6b69169ad4e990282f20f3531d347cdca36bf
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-06-12 (Thu, 12 Jun 2025)
Changed paths:
A admin/pam/pam_no_ad/Makefile
A admin/pam/pam_no_ad/README.md
A admin/pam/pam_no_ad/files/php
A admin/pam/pam_no_ad/files/sssd.conf
R admin/pam_auth_helper/Makefile
R admin/pam_auth_helper/README.md
R admin/pam_auth_helper/pam.d/php-helper
R admin/pam_auth_helper/pam_auth_helper.c
R admin/pam_auth_helper/pam_auth_test.php
Log Message:
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PAM auth no AD/LDAP, Linux passwords only
Commit: 5050f341dbde4ea01ba7f0e3aa9862fbb5fbe6b9
https://github.com/ehb54/ultrascan3/commit/5050f341dbde4ea01ba7f0e3aa9862fbb5fbe6b9
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-06-12 (Thu, 12 Jun 2025)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
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Merge pull request #226 from ehb54/master
merge master to issue branch
Commit: b16f0504f2f4404db161c55323d9df63622854fc
https://github.com/ehb54/ultrascan3/commit/b16f0504f2f4404db161c55323d9df63622854fc
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-06-12 (Thu, 12 Jun 2025)
Changed paths:
M admin/pam/pam_no_ad/README.md
Log Message:
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Update README.md
Commit: bd0a2263e0e3493aaa08624c81fcbd820f172a1d
https://github.com/ehb54/ultrascan3/commit/bd0a2263e0e3493aaa08624c81fcbd820f172a1d
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-06-12 (Thu, 12 Jun 2025)
Changed paths:
A admin/pam/pam_no_ad/pam_auth_test.php
Log Message:
-----------
PAM for linux password for php - pam_auth_test.php
Commit: 1a4ce194b046f388b13ae0c04a5f361478f90700
https://github.com/ehb54/ultrascan3/commit/1a4ce194b046f388b13ae0c04a5f361478f90700
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-06-12 (Thu, 12 Jun 2025)
Changed paths:
M admin/pam/pam_no_ad/README.md
Log Message:
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Update README.md
Commit: df89a15dee591af68573b8840c6f78586499c3a3
https://github.com/ehb54/ultrascan3/commit/df89a15dee591af68573b8840c6f78586499c3a3
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-06-12 (Thu, 12 Jun 2025)
Changed paths:
M admin/pam/pam_no_ad/pam_auth_test.php
Log Message:
-----------
PAM for linux password for php - pam_auth_test.php
Commit: c65ba3d71581de0a41ee41787e66c4026190dc18
https://github.com/ehb54/ultrascan3/commit/c65ba3d71581de0a41ee41787e66c4026190dc18
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-06-12 (Thu, 12 Jun 2025)
Changed paths:
M admin/pam/pam_no_ad/Makefile
A admin/pam/pam_no_ad/files/mariadb
M admin/pam/pam_no_ad/files/sssd.conf
A admin/pam/pam_no_ad/files/system-auth-nosss
Log Message:
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pam - updated config
Commit: 93f3f88fd38b866aad319181f61dc3e4aa8bcfe3
https://github.com/ehb54/ultrascan3/commit/93f3f88fd38b866aad319181f61dc3e4aa8bcfe3
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-06-12 (Thu, 12 Jun 2025)
Changed paths:
M admin/pam/pam_no_ad/README.md
Log Message:
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pam - updated READEM
Commit: bb52f3f31f0438cd66c01a5d7e4eb903ce4b37d0
https://github.com/ehb54/ultrascan3/commit/bb52f3f31f0438cd66c01a5d7e4eb903ce4b37d0
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-06-12 (Thu, 12 Jun 2025)
Changed paths:
M admin/pam/pam_no_ad/README.md
Log Message:
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Update README.md
Commit: 1eb1eb3811ccfad632482d58ed2a9ba6015609a4
https://github.com/ehb54/ultrascan3/commit/1eb1eb3811ccfad632482d58ed2a9ba6015609a4
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-06-13 (Fri, 13 Jun 2025)
Changed paths:
M admin/pam/pam_no_ad/files/sssd.conf
Log Message:
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remove proxy_fast_switch
sssd.log reports [sssd] [sss_ini_call_validators] (0x0020): [rule/allowed_domain_options]: Attribute 'proxy_fast_switch' is not allowed in section 'domain/local'.
Commit: 1c7bcff1b439d260af022b29abcf3f0bb17c3983
https://github.com/ehb54/ultrascan3/commit/1c7bcff1b439d260af022b29abcf3f0bb17c3983
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-06-13 (Fri, 13 Jun 2025)
Changed paths:
M admin/pam/pam_no_ad/README.md
A admin/pam/pam_no_ad/pam_auth_pamtester.php
Log Message:
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issue496 - pamtester testing
Commit: 7ce6ebcdb8cbd49311441bf7937aba4fec2bffd6
https://github.com/ehb54/ultrascan3/commit/7ce6ebcdb8cbd49311441bf7937aba4fec2bffd6
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-06-13 (Fri, 13 Jun 2025)
Changed paths:
M admin/pam/pam_no_ad/README.md
Log Message:
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Update README.md
Commit: 6276beb67d5181eba36861791acef5e415723e89
https://github.com/ehb54/ultrascan3/commit/6276beb67d5181eba36861791acef5e415723e89
Author: aaron <aaron at aucsolutions.com>
Date: 2025-06-29 (Sun, 29 Jun 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
A CITATION.cff
M CMakeLists.txt
M LICENSE.txt
M admin/codeql/docker/docker/Dockerfile
M admin/codeql/docker/dockerdev/Dockerfile
M admin/release/buildpkg.pl
M admin/release/centos7/Dockerfile
M admin/release/redhat/Dockerfile
M admin/release/ubuntu/Dockerfile
A admin/release/ubuntu/mathops.h
M admin/release/ubuntu_qt6/Dockerfile
A admin/us_branch/README.md
A admin/us_branch/us_branch.php
A admin/us_branch/utility.php
M alpha/us.cpp
A doc/calc_model_coefficient_documentation.pdf
A doc/calc_timestate_documentation.pdf
R doc/manual/2dsa.body
A doc/manual/2dsa/2dsa.body
A doc/manual/2dsa/2dsa_advan.body
A doc/manual/2dsa/2dsa_analvv.body
A doc/manual/2dsa/2dsa_analys.body
R doc/manual/2dsa_advan.body
R doc/manual/2dsa_analvv.body
R doc/manual/2dsa_analys.body
M doc/manual/Makefile
M doc/manual/README
M doc/manual/advanced_config.body
M doc/manual/astfem_sim.body
M doc/manual/cfa_viewer.body
M doc/manual/colorgradient.body
M doc/manual/config.body
M doc/manual/config2.body
M doc/manual/convert.body
M doc/manual/data_loader.body
M doc/manual/ddist_combine.body
M doc/manual/dens_match.body
A doc/manual/experiment/experiment_cells.body
A doc/manual/experiment/experiment_general.body
A doc/manual/experiment/experiment_photomult.body
A doc/manual/experiment/experiment_rotor.body
A doc/manual/experiment/experiment_solutions.body
A doc/manual/experiment/experiment_speeds.body
A doc/manual/experiment/experiment_upload.body
R doc/manual/experiment_cells.body
R doc/manual/experiment_general.body
R doc/manual/experiment_photomult.body
R doc/manual/experiment_rotor.body
R doc/manual/experiment_solutions.body
R doc/manual/experiment_speeds.body
R doc/manual/experiment_upload.body
M doc/manual/export_legacy.body
R doc/manual/fe_match.body
A doc/manual/fe_match/fe_match.body
A doc/manual/fe_match/fe_match_adv.body
A doc/manual/fe_match/fe_match_controls.body
A doc/manual/fe_match/fe_match_lddat.body
A doc/manual/fe_match/fe_match_simulate.body
R doc/manual/fe_match_adv.body
R doc/manual/fe_match_controls.body
R doc/manual/fe_match_lddat.body
R doc/manual/fe_match_simulate.body
M doc/manual/fit_meniscus.body
M doc/manual/ga_initialize.body
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A doc/manual/gmp/gmp_audit_trail.body
A doc/manual/gmp/gmp_data_acquisition.body
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A doc/manual/gmp/gmp_data_acquisition_gmp.body
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A doc/manual/gmp/gmp_report_generator.body
A doc/manual/gmp/gmp_signature.body
M doc/manual/grid_editor.body
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M gui/us_license.cpp
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M gui/us_model_gui.h
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M programs/us_2dsa/us_2dsa.cpp
M programs/us_2dsa/us_analysis_control_2d.cpp
M programs/us_abde/us_abde_main.cpp
M programs/us_abde/us_norm_profile.cpp
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M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_astfem_sim/us_astfem_sim.h
M programs/us_astfem_sim/us_clipdata.h
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
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M programs/us_convert/us_experiment.cpp
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M utils/us_simparms.cpp
M utils/us_xpn_data.cpp
M utils/us_xpn_data.h
Log Message:
-----------
Merge remote-tracking branch 'origin/master' into aaron-dev-test-utils
# Conflicts:
# CMakeLists.txt
# test/utils/CMakeLists.txt
# test/utils/test_us_utils_main.cpp
# utils/CMakeLists.txt
Commit: a423656c7a4997ae177e5406c7b8f846d5cda459
https://github.com/ehb54/ultrascan3/commit/a423656c7a4997ae177e5406c7b8f846d5cda459
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-01 (Tue, 01 Jul 2025)
Changed paths:
M CMakeLists.txt
A admin/test/docker/Dockerfile
A test-docker.sh
M test/utils/CMakeLists.txt
M test/utils/mock/mock_us_db2.h
M test/utils/test_mock_us_db2.cpp
M test/utils/test_mock_us_db2.h
M test/utils/test_us_buffer.cpp
M test/utils/test_us_project.cpp
M test/utils/test_us_project.h
R test/utils/test_us_project_gtest.cpp
R test/utils/test_us_project_gtest.h
R test/utils/test_us_simparams.cpp
R test/utils/test_us_simparams.h
M test/utils/test_us_simparms.cpp
M test/utils/test_us_utils_main.cpp
M utils/CMakeLists.txt
A utils/ius_db2.h
M utils/us_db2.cpp
M utils/us_db2.h
M utils/us_project.cpp
M utils/us_project.h
Log Message:
-----------
dependency injection, docker, and remove duplicates
Commit: b10a7ddbde27cb31ff6ce03fac85921856c2c90f
https://github.com/ehb54/ultrascan3/commit/b10a7ddbde27cb31ff6ce03fac85921856c2c90f
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-03 (Thu, 03 Jul 2025)
Changed paths:
M CMakeLists.txt
M test-docker.sh
A test/common/qt_test_base.cpp
A test/common/qt_test_base.h
M test/utils/CMakeLists.txt
M test/utils/test_us_ana_profile.cpp
M test/utils/test_us_ana_profile.h
M test/utils/test_us_analyte.cpp
M test/utils/test_us_analyte.h
M test/utils/test_us_astfem_math.cpp
M test/utils/test_us_astfem_math.h
M test/utils/test_us_buffer.cpp
M test/utils/test_us_crc.cpp
M test/utils/test_us_crc.h
M test/utils/test_us_crypto.cpp
M test/utils/test_us_crypto.h
M test/utils/test_us_dataIO.cpp
M test/utils/test_us_dataIO.h
M test/utils/test_us_datafiles.cpp
M test/utils/test_us_datafiles.h
M test/utils/test_us_db2.cpp
M test/utils/test_us_db2.h
M test/utils/test_us_math2.cpp
M test/utils/test_us_math2.h
M test/utils/test_us_matrix.cpp
M test/utils/test_us_matrix.h
M test/utils/test_us_memory.cpp
M test/utils/test_us_memory.h
M test/utils/test_us_settings.cpp
M test/utils/test_us_settings.h
M test/utils/test_us_simparms.cpp
M test/utils/test_us_simparms.h
M test/utils/test_us_utils_main.cpp
M utils/us_dataIO.h
Log Message:
-----------
convert qtests to google tests
Commit: 54099cb2ff6ed13d069418492a1d7c6430277fb4
https://github.com/ehb54/ultrascan3/commit/54099cb2ff6ed13d069418492a1d7c6430277fb4
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-03 (Thu, 03 Jul 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
remove specific test logic
Commit: 5e9fb44fd3876b7e28a86b61c5cc8ceed76a903a
https://github.com/ehb54/ultrascan3/commit/5e9fb44fd3876b7e28a86b61c5cc8ceed76a903a
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-03 (Thu, 03 Jul 2025)
Changed paths:
M test/utils/test_us_crypto.cpp
Log Message:
-----------
test failing test
Commit: 29b485c94b6bfd0e1f7be5ca07da8449cefe8081
https://github.com/ehb54/ultrascan3/commit/29b485c94b6bfd0e1f7be5ca07da8449cefe8081
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-03 (Thu, 03 Jul 2025)
Changed paths:
M test/utils/test_us_crypto.cpp
Log Message:
-----------
disabled failing test
Commit: 9f15926c85f745d67b489772eb640400a916ad92
https://github.com/ehb54/ultrascan3/commit/9f15926c85f745d67b489772eb640400a916ad92
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-05 (Sat, 05 Jul 2025)
Changed paths:
M CMakeLists.txt
M test-docker.sh
A test/README.md
Log Message:
-----------
fixed comment, added readme
Commit: 3212f77418d1cedfe0dbc2db7f9d1a47a672d8f4
https://github.com/ehb54/ultrascan3/commit/3212f77418d1cedfe0dbc2db7f9d1a47a672d8f4
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-06 (Sun, 06 Jul 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
code analysis
Commit: a9025670cc855940cf159141a10a5e0648312794
https://github.com/ehb54/ultrascan3/commit/a9025670cc855940cf159141a10a5e0648312794
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-06 (Sun, 06 Jul 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
code analysis removed sudo
Commit: bbdf69b0fef6c0be255ef3bdecfba8597797c668
https://github.com/ehb54/ultrascan3/commit/bbdf69b0fef6c0be255ef3bdecfba8597797c668
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-06 (Sun, 06 Jul 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
A .github/workflows/static-analysis.yml
Log Message:
-----------
moved static analysis to separate file
Commit: d208f8e88de47207cc309f9b9e25483681973e03
https://github.com/ehb54/ultrascan3/commit/d208f8e88de47207cc309f9b9e25483681973e03
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-06 (Sun, 06 Jul 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
fix iwyu
Commit: 3df3a60b840e7b78e9c6cbf9fe581f08a77f3d6e
https://github.com/ehb54/ultrascan3/commit/3df3a60b840e7b78e9c6cbf9fe581f08a77f3d6e
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-09 (Wed, 09 Jul 2025)
Changed paths:
R doc/manual/README
A doc/manual/README.md
Log Message:
-----------
update manual creation instructions
Commit: cbf13444f00522dfc1c7ba1dc91c9ba64c39e782
https://github.com/ehb54/ultrascan3/commit/cbf13444f00522dfc1c7ba1dc91c9ba64c39e782
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-09 (Wed, 09 Jul 2025)
Changed paths:
M test/README.md
Log Message:
-----------
update manual creation instructions
Commit: a65be797990b6aa12a17b160b052482c930fb9ce
https://github.com/ehb54/ultrascan3/commit/a65be797990b6aa12a17b160b052482c930fb9ce
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-09 (Wed, 09 Jul 2025)
Changed paths:
M doc/manual/README.md
Log Message:
-----------
update manual creation instructions
Commit: 0ce7f8bbe5702044fddc573c6c7ea2002b72510d
https://github.com/ehb54/ultrascan3/commit/0ce7f8bbe5702044fddc573c6c7ea2002b72510d
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-13 (Sun, 13 Jul 2025)
Changed paths:
M CMakeLists.txt
M admin/test/docker/Dockerfile
A gui/CMakeLists.txt
M gui/us_abstractrotor_gui.cpp
M gui/us_buffer_gui.cpp
M gui/us_data_loader.cpp
M gui/us_failed_gmp_run_gui.cpp
M gui/us_load_auc.cpp
M gui/us_loadable_noise.cpp
M gui/us_model_gui.cpp
M gui/us_model_gui.h
M gui/us_model_loader.cpp
M gui/us_model_loader.h
M gui/us_noise_loader.h
M gui/us_project_gui.cpp
M gui/us_rotor_gui.cpp
M gui/us_solution_gui.cpp
M programs/us/us.cpp
M programs/us_2dsa/us_2dsa.cpp
M programs/us_astfem_sim/us_clipdata.cpp
M programs/us_config/us_database.cpp
M programs/us_config/us_xpnhost_db.cpp
M programs/us_config/us_xpnhost_db.h
M programs/us_convert/us_get_run.cpp
M programs/us_edit/us_edit.h
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_ga_init/us_solutedata.cpp
M programs/us_integral/us_integral.cpp
M programs/us_manage_data/us_manage_data.cpp
M programs/us_mwlr_viewer/us_mwl_run.cpp
M programs/us_pcsa/us_adv_analysis_pc.cpp
M programs/us_pcsa/us_analysis_control_pc.cpp
M programs/us_pcsa/us_mrecs_loader.cpp
M programs/us_pcsa/us_mrecs_loader.h
M programs/us_pcsa/us_pcsa.cpp
M programs/us_pcsa/us_pcsa_process.cpp
M programs/us_pcsa/us_rpscan.cpp
M programs/us_ramp/us_experiment_gui_ra.cpp
M programs/us_ramp/us_experiment_ra.cpp
M programs/us_ramp/us_experiment_ra.h
M programs/us_ramp/us_get_dbrun_ra.cpp
M programs/us_ramp/us_ramp_gui.cpp
M programs/us_reporter/us_reporter.cpp
M programs/us_xpn_viewer/us_xpn_run_auc.cpp
M programs/us_xpn_viewer/us_xpn_run_raw.cpp
M test-docker.sh
M test/common/qt_test_base.h
M test/utils/CMakeLists.txt
M test/utils/mock/mock_us_db2.h
M test/utils/test_mock_us_db2.cpp
R test/utils/test_mock_us_db2.h
M test/utils/test_us_ana_profile.cpp
R test/utils/test_us_ana_profile.h
M test/utils/test_us_analyte.cpp
R test/utils/test_us_analyte.h
M test/utils/test_us_astfem_math.cpp
R test/utils/test_us_astfem_math.h
M test/utils/test_us_astfem_rsa.cpp
R test/utils/test_us_astfem_rsa.h
M test/utils/test_us_buffer.cpp
M test/utils/test_us_crc.cpp
R test/utils/test_us_crc.h
M test/utils/test_us_crypto.cpp
R test/utils/test_us_crypto.h
M test/utils/test_us_dataIO.cpp
R test/utils/test_us_dataIO.h
M test/utils/test_us_datafiles.cpp
R test/utils/test_us_datafiles.h
M test/utils/test_us_db2.cpp
R test/utils/test_us_db2.h
M test/utils/test_us_math2.cpp
R test/utils/test_us_math2.h
M test/utils/test_us_matrix.cpp
R test/utils/test_us_matrix.h
M test/utils/test_us_memory.cpp
R test/utils/test_us_memory.h
M test/utils/test_us_model.cpp
R test/utils/test_us_model.h
M test/utils/test_us_project.cpp
R test/utils/test_us_project.h
M test/utils/test_us_settings.cpp
R test/utils/test_us_settings.h
M test/utils/test_us_simparms.cpp
R test/utils/test_us_simparms.h
M test/utils/test_us_stiffbase.cpp
R test/utils/test_us_stiffbase.h
M test/utils/test_us_time_state.cpp
R test/utils/test_us_time_state.h
A test/utils/test_us_timer.cpp
M test/utils/test_us_util.cpp
R test/utils/test_us_util.h
M test/utils/test_us_utils_main.cpp
A test/utils/test_us_vector.cpp
M us_somo/develop/include/us_zeno_cxx.h
M us_somo/develop/include/us_zeno_cxx_nf.h
M utils/CMakeLists.txt
M utils/us_analyte.cpp
M utils/us_analyte.h
M utils/us_astfem_rsa.cpp
M utils/us_buffer.cpp
M utils/us_buffer.h
M utils/us_cfa_data.cpp
M utils/us_dataIO.cpp
M utils/us_eprofile.cpp
M utils/us_eprofile.h
M utils/us_hardware.cpp
M utils/us_hardware.h
M utils/us_lamm_astfvm.cpp
M utils/us_model.cpp
M utils/us_model.h
M utils/us_noise.cpp
M utils/us_noise.h
M utils/us_report.cpp
M utils/us_report.h
M utils/us_rotor.cpp
M utils/us_rotor.h
M utils/us_simparms.cpp
M utils/us_simparms.h
M utils/us_solution.cpp
M utils/us_solution.h
M utils/us_solution_vals.cpp
M utils/us_solution_vals.h
M utils/us_solve_sim.cpp
M utils/us_solve_sim.h
M utils/us_time_state.cpp
M utils/us_time_state.h
M utils/us_xpn_data.cpp
Log Message:
-----------
ius_db2 build
Commit: 76e2cf6ae4e764993cbd9d37d1bd086413514e3d
https://github.com/ehb54/ultrascan3/commit/76e2cf6ae4e764993cbd9d37d1bd086413514e3d
Author: aaron <aaron at aucsolutions.com>
Date: 2025-08-27 (Wed, 27 Aug 2025)
Changed paths:
M .gitignore
M test-docker.sh
A test/README
R test/README.md
M test/utils/test_us_ana_profile.cpp
M test/utils/test_us_analyte.cpp
M test/utils/test_us_astfem_math.cpp
M test/utils/test_us_astfem_rsa.cpp
M test/utils/test_us_buffer.cpp
M test/utils/test_us_crypto.cpp
M test/utils/test_us_datafiles.cpp
M test/utils/test_us_math2.cpp
M test/utils/test_us_matrix.cpp
M test/utils/test_us_memory.cpp
M test/utils/test_us_model.cpp
M test/utils/test_us_project.cpp
M test/utils/test_us_settings.cpp
M test/utils/test_us_stiffbase.cpp
M test/utils/test_us_time_state.cpp
M test/utils/test_us_util.cpp
Log Message:
-----------
working set of util unit tests
Commit: 3a4240895ec21be113a64f6d852aa70cdc0f9455
https://github.com/ehb54/ultrascan3/commit/3a4240895ec21be113a64f6d852aa70cdc0f9455
Author: aaron <aaron at aucsolutions.com>
Date: 2025-08-27 (Wed, 27 Aug 2025)
Changed paths:
M gui/us_sim_params_gui.cpp
M gui/us_sim_params_gui.h
M gui/us_tmst_plot.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_astfem_sim/us_astfem_sim.h
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_edit/us_edit.cpp
M programs/us_fematch/us_resplot_fem.cpp
M programs/us_fit_meniscus/us_fit_meniscus.cpp
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
M utils/us_simparms.cpp
M utils/us_simparms.h
Log Message:
-----------
Merge remote-tracking branch 'origin/master' into aaron-dev-test-utils
# Conflicts:
# utils/us_simparms.cpp
Commit: eb5398d2831269197d566f36400b5f80c87ac2b1
https://github.com/ehb54/ultrascan3/commit/eb5398d2831269197d566f36400b5f80c87ac2b1
Author: aaron <aaron at aucsolutions.com>
Date: 2025-08-27 (Wed, 27 Aug 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_ga_init/us_solutedata.cpp
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M us_somo/develop/include/us3_defines.h
A us_somo/develop/include/us_band_broaden.h
M us_somo/develop/include/us_hydrodyn.h
M us_somo/develop/include/us_hydrodyn_cluster_best.h
M us_somo/develop/include/us_hydrodyn_dad.h
M us_somo/develop/include/us_hydrodyn_hydro.h
M us_somo/develop/include/us_hydrodyn_hydro_zeno.h
M us_somo/develop/include/us_hydrodyn_mals.h
M us_somo/develop/include/us_hydrodyn_saxs.h
M us_somo/develop/include/us_hydrodyn_saxs_buffer.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc_ciq.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc_fit.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc_movie.h
M us_somo/develop/include/us_json.h
M us_somo/develop/include/us_matrix.h
M us_somo/develop/include/us_multi_column.h
M us_somo/develop/include/us_pfortran.h
M us_somo/develop/include/us_saxs_util.h
M us_somo/develop/include/us_tar.h
M us_somo/develop/include/us_tnt_jama.h
M us_somo/develop/include/us_unicode.h
M us_somo/develop/libus_somo.pro
M us_somo/develop/src/qwt/scrollzoomer.cpp
M us_somo/develop/src/us3i_color.cpp
M us_somo/develop/src/us3i_util.cpp
A us_somo/develop/src/us_band_broaden.cpp
M us_somo/develop/src/us_color.cpp
M us_somo/develop/src/us_config_gui.cpp
M us_somo/develop/src/us_dirhist.cpp
M us_somo/develop/src/us_ffd.cpp
M us_somo/develop/src/us_font.cpp
M us_somo/develop/src/us_fractal_dimension.cpp
M us_somo/develop/src/us_help.cpp
M us_somo/develop/src/us_hydrodyn.cpp
M us_somo/develop/src/us_hydrodyn_addatom.cpp
M us_somo/develop/src/us_hydrodyn_addhybrid.cpp
M us_somo/develop/src/us_hydrodyn_addresidue.cpp
M us_somo/develop/src/us_hydrodyn_addsaxs.cpp
M us_somo/develop/src/us_hydrodyn_batch.cpp
M us_somo/develop/src/us_hydrodyn_bd_core.cpp
M us_somo/develop/src/us_hydrodyn_bd_load_results_opts.cpp
M us_somo/develop/src/us_hydrodyn_bd_options.cpp
M us_somo/develop/src/us_hydrodyn_beads.cpp
M us_somo/develop/src/us_hydrodyn_beads_load.cpp
M us_somo/develop/src/us_hydrodyn_cluster.cpp
M us_somo/develop/src/us_hydrodyn_cluster_advanced.cpp
M us_somo/develop/src/us_hydrodyn_cluster_best.cpp
M us_somo/develop/src/us_hydrodyn_cluster_results.cpp
M us_somo/develop/src/us_hydrodyn_cluster_status.cpp
M us_somo/develop/src/us_hydrodyn_cluster_submit.cpp
M us_somo/develop/src/us_hydrodyn_core.cpp
M us_somo/develop/src/us_hydrodyn_dad.cpp
M us_somo/develop/src/us_hydrodyn_dad_gg.cpp
M us_somo/develop/src/us_hydrodyn_dad_gui.cpp
M us_somo/develop/src/us_hydrodyn_dad_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_bb.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_guinier.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_powerfit.cpp
M us_somo/develop/src/us_hydrodyn_dad_movie.cpp
M us_somo/develop/src/us_hydrodyn_dad_options.cpp
M us_somo/develop/src/us_hydrodyn_dad_parameters.cpp
M us_somo/develop/src/us_hydrodyn_dad_plots.cpp
M us_somo/develop/src/us_hydrodyn_dad_svd.cpp
M us_somo/develop/src/us_hydrodyn_dad_util.cpp
M us_somo/develop/src/us_hydrodyn_dammin_opts.cpp
M us_somo/develop/src/us_hydrodyn_fractal_dimension.cpp
M us_somo/develop/src/us_hydrodyn_grid_atob.cpp
M us_somo/develop/src/us_hydrodyn_grpy.cpp
M us_somo/develop/src/us_hydrodyn_hydrate.cpp
M us_somo/develop/src/us_hydrodyn_hydrate_align.cpp
M us_somo/develop/src/us_hydrodyn_hydro.cpp
M us_somo/develop/src/us_hydrodyn_hydro_zeno.cpp
M us_somo/develop/src/us_hydrodyn_info.cpp
M us_somo/develop/src/us_hydrodyn_load.cpp
M us_somo/develop/src/us_hydrodyn_mals.cpp
M us_somo/develop/src/us_hydrodyn_mals_gg.cpp
M us_somo/develop/src/us_hydrodyn_mals_gui.cpp
M us_somo/develop/src/us_hydrodyn_mals_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_mals_modes_bb.cpp
M us_somo/develop/src/us_hydrodyn_mals_modes_guinier.cpp
M us_somo/develop/src/us_hydrodyn_mals_movie.cpp
M us_somo/develop/src/us_hydrodyn_mals_options.cpp
M us_somo/develop/src/us_hydrodyn_mals_plots.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_gg.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_gui.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_bb.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_guinier.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_scale.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_movie.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_options.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_plots.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_svd.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_util.cpp
M us_somo/develop/src/us_hydrodyn_mals_svd.cpp
M us_somo/develop/src/us_hydrodyn_mals_util.cpp
M us_somo/develop/src/us_hydrodyn_misc.cpp
M us_somo/develop/src/us_hydrodyn_other.cpp
M us_somo/develop/src/us_hydrodyn_pat.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool_merge.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool_util.cpp
M us_somo/develop/src/us_hydrodyn_results.cpp
M us_somo/develop/src/us_hydrodyn_save.cpp
M us_somo/develop/src/us_hydrodyn_saxs.cpp
M us_somo/develop/src/us_hydrodyn_saxs_1d.cpp
M us_somo/develop/src/us_hydrodyn_saxs_2d.cpp
M us_somo/develop/src/us_hydrodyn_saxs_buffer.cpp
A us_somo/develop/src/us_hydrodyn_saxs_buffer_fit.cpp
A us_somo/develop/src/us_hydrodyn_saxs_buffer_gui.cpp
M us_somo/develop/src/us_hydrodyn_saxs_cormap.cpp
M us_somo/develop/src/us_hydrodyn_saxs_guinier.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_ciq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_fit.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_gg.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_gui.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_bb.cpp
A us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_broaden.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_wheel.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_movie.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_options.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_plots.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_svd.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_util.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_bead_model.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_residuals.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_sh.cpp
M us_somo/develop/src/us_hydrodyn_saxs_loads.cpp
M us_somo/develop/src/us_hydrodyn_saxs_mw.cpp
M us_somo/develop/src/us_hydrodyn_saxs_plots.cpp
M us_somo/develop/src/us_hydrodyn_saxs_pr.cpp
M us_somo/develop/src/us_hydrodyn_saxs_screen.cpp
M us_somo/develop/src/us_hydrodyn_script.cpp
M us_somo/develop/src/us_hydrodyn_settings.cpp
M us_somo/develop/src/us_hydrodyn_supc.cpp
M us_somo/develop/src/us_hydrodyn_util.cpp
M us_somo/develop/src/us_hydrodyn_write.cpp
M us_somo/develop/src/us_hydrodyn_zeno.cpp
M us_somo/develop/src/us_imgviewer.cpp
M us_somo/develop/src/us_json.cpp
M us_somo/develop/src/us_matrix.cpp
M us_somo/develop/src/us_plot_util.cpp
M us_somo/develop/src/us_plot_zoom.cpp
M us_somo/develop/src/us_pm_fitness.cpp
M us_somo/develop/src/us_register.cpp
M us_somo/develop/src/us_saxs_util.cpp
M us_somo/develop/src/us_saxs_util_best.cpp
M us_somo/develop/src/us_saxs_util_guinier.cpp
M us_somo/develop/src/us_saxs_util_hydrate.cpp
M us_somo/develop/src/us_saxs_util_hydrate_align.cpp
M us_somo/develop/src/us_saxs_util_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_grid_atob_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_pat_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_supc_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_zeno_hydro.cpp
M us_somo/develop/src/us_saxs_util_iqq.cpp
M us_somo/develop/src/us_saxs_util_iqq_1d.cpp
M us_somo/develop/src/us_saxs_util_iqq_bead_model.cpp
M us_somo/develop/src/us_saxs_util_iqq_pdb.cpp
M us_somo/develop/src/us_saxs_util_loads.cpp
M us_somo/develop/src/us_saxs_util_pat.cpp
M us_somo/develop/src/us_saxs_util_pm.cpp
M us_somo/develop/src/us_saxs_util_static.cpp
M us_somo/develop/src/us_tar.cpp
M us_somo/develop/src/us_util.cpp
M us_somo/develop/src/us_zeno_cxx.cpp
M us_somo/somo/doc/manual/somo/somo-Zeno_optionsNew.png
M us_somo/somo/doc/manual/somo/somo-main0new.png
M us_somo/somo/doc/manual/somo/somo-main4.png
M us_somo/somo/doc/manual/somo/somo.html
A us_somo/somo/doc/manual/somo/somo_ZENO_correction_warning.png
M us_somo/somo/doc/manual/somo/somo_cluster_config.html
M us_somo/somo/doc/manual/somo/somo_hydro_zeno.html
M utils/us_model.cpp
M utils/us_model.h
Log Message:
-----------
Merge remote-tracking branch 'origin/master' into aaron-dev-test-utils
Commit: 6c17ff96ca055f6cc43eeb2532d0eceab53580b3
https://github.com/ehb54/ultrascan3/commit/6c17ff96ca055f6cc43eeb2532d0eceab53580b3
Author: aaron <aaron at aucsolutions.com>
Date: 2025-08-27 (Wed, 27 Aug 2025)
Changed paths:
M utils/us_solution.cpp
Log Message:
-----------
set to lowercase ius_db2.h
Commit: 483c6d095b00b75710d4feeb2d9b996f0a4bd213
https://github.com/ehb54/ultrascan3/commit/483c6d095b00b75710d4feeb2d9b996f0a4bd213
Author: aaron <aaron at aucsolutions.com>
Date: 2025-08-27 (Wed, 27 Aug 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
A admin/test/cmake/hints.cmake
M admin/test/docker/Dockerfile
M test-docker.sh
Log Message:
-----------
add cmake hint file
Commit: 76997c2b070b1a6fdab90be7c72e7ae8d8e7271f
https://github.com/ehb54/ultrascan3/commit/76997c2b070b1a6fdab90be7c72e7ae8d8e7271f
Author: aaron <aaron at aucsolutions.com>
Date: 2025-08-27 (Wed, 27 Aug 2025)
Changed paths:
M utils/us_simparms.cpp
Log Message:
-----------
iusdb changes
Commit: 295b4c9f222964264a4f4f2c9890d5b9f9d61f24
https://github.com/ehb54/ultrascan3/commit/295b4c9f222964264a4f4f2c9890d5b9f9d61f24
Author: aaron <aaron at aucsolutions.com>
Date: 2025-08-27 (Wed, 27 Aug 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
M .github/workflows/static-analysis.yml
M utils/ius_db2.h
Log Message:
-----------
iusdb add qstring constuctor, turn off static analysis, move safe directory config
Commit: 4ba0f871fcfc325f8d6405a2a94f8ffdca1b09e3
https://github.com/ehb54/ultrascan3/commit/4ba0f871fcfc325f8d6405a2a94f8ffdca1b09e3
Author: aaron <aaron at aucsolutions.com>
Date: 2025-08-27 (Wed, 27 Aug 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
M gui/us_abstractrotor_gui.cpp
Log Message:
-----------
error in gui build related to iusdb2
Commit: 217485a90c5e92e0e810e5e3dfe2dac0177b8b35
https://github.com/ehb54/ultrascan3/commit/217485a90c5e92e0e810e5e3dfe2dac0177b8b35
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M CMakeLists.txt
A admin/cmake/FindQwt.cmake
A admin/cmake/us_version.h.in
R admin/test/cmake/hints.cmake
M admin/test/docker/Dockerfile
M gui/CMakeLists.txt
M gui/us_buffer_gui.cpp
M gui/us_data_loader.cpp
M gui/us_failed_gmp_run_gui.cpp
M gui/us_load_auc.cpp
M gui/us_loadable_noise.cpp
M gui/us_model_gui.cpp
M gui/us_model_loader.cpp
M gui/us_noise_loader.cpp
M gui/us_noise_loader.h
M gui/us_project_gui.cpp
M gui/us_rotor_gui.cpp
M gui/us_solution_gui.cpp
A programs/CMakeLists.txt
M programs/us/us.cpp
M programs/us/us_win_data.cpp
A programs/us_autoflow_analysis/CMakeLists.txt
A programs/us_com_project/CMakelists.txt
A programs/us_com_project_academic/CMakeLists.txt
M programs/us_config/us_database.cpp
M programs/us_config/us_xpnhost_db.cpp
M programs/us_convert/us_select_triples.h
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_ddist_combine.h
M programs/us_edit/us_edit.cpp
A programs/us_experiment/CMakeLists.txt
A programs/us_fematch/CMakeLists.txt
A programs/us_fit_meniscus/CMakeLists.txt
A programs/us_mwl_species_fit/CMakeLists.txt
M programs/us_pcsa/us_pcsa.cpp
A programs/us_protocol_dev/CMakeLists.txt
A programs/us_query_rmsd/CMakeLists.txt
M programs/us_ramp/us_experiment_gui_ra.cpp
M programs/us_ramp/us_get_dbrun_ra.cpp
M programs/us_ramp/us_ramp_gui.cpp
A programs/us_reporter_gmp/CMakeLists.txt
M test-docker.sh
M test/utils/CMakeLists.txt
M test/utils/test_us_astfem_rsa.cpp
M test/utils/test_us_buffer.cpp
M test/utils/test_us_db2.cpp
M utils/CMakeLists.txt
Log Message:
-----------
error in build related to iusdb2, cmake build for programs, and working unit tests
Commit: 8401655782f10eb593ea8537ea59378e3da8f03b
https://github.com/ehb54/ultrascan3/commit/8401655782f10eb593ea8537ea59378e3da8f03b
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
A .github/workflows/unit-tests.yml
Log Message:
-----------
move unit tests trigger to separate file
Commit: 73021e71e98437f3583fc6edcaf0fe2faf72d5fd
https://github.com/ehb54/ultrascan3/commit/73021e71e98437f3583fc6edcaf0fe2faf72d5fd
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M programs/us_com_project/CMakelists.txt
A qwtplot3d/CMakeLists.txt
Log Message:
-----------
add us_com_project cmakelists
Commit: c9030ec25f5d2ce4547c140beaf0d06baa785f4a
https://github.com/ehb54/ultrascan3/commit/c9030ec25f5d2ce4547c140beaf0d06baa785f4a
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
A programs/us_com_project/CMakeLists.txt
R programs/us_com_project/CMakelists.txt
Log Message:
-----------
fix us_com_project cmakelists had lowercase l in name
Commit: 7edcb7cb1815454a3c1517671b8f46ba157b7fd5
https://github.com/ehb54/ultrascan3/commit/7edcb7cb1815454a3c1517671b8f46ba157b7fd5
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
modifed static-analysis.yml should not run and not send email
Commit: a414cfc8f6a9b899f987a41925b89b2a948b954a
https://github.com/ehb54/ultrascan3/commit/a414cfc8f6a9b899f987a41925b89b2a948b954a
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
modifed static-analysis.yml running but non-failing
Commit: 09d7e2075e6ba517445079e50e2410866d36ef05
https://github.com/ehb54/ultrascan3/commit/09d7e2075e6ba517445079e50e2410866d36ef05
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
modifed static-analysis.yml install libqwt-qt5-dev
Commit: 6014d3b78be1f58f196982b8e963eb9a1fd10650
https://github.com/ehb54/ultrascan3/commit/6014d3b78be1f58f196982b8e963eb9a1fd10650
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
modifed static-analysis.yml use cmake
Commit: 86802e7c8b63d5dafae200d92ab4edd449a76122
https://github.com/ehb54/ultrascan3/commit/86802e7c8b63d5dafae200d92ab4edd449a76122
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
modifed static-analysis.yml use cmake
Commit: 1c1fe3aebbc7885934e26733499fdc6e3443cd25
https://github.com/ehb54/ultrascan3/commit/1c1fe3aebbc7885934e26733499fdc6e3443cd25
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
modifed static-analysis.yml remove format check
Commit: 545dd0c591ceb5f40b85403fe9d72a8dc2079608
https://github.com/ehb54/ultrascan3/commit/545dd0c591ceb5f40b85403fe9d72a8dc2079608
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-02 (Tue, 02 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
fix static-analysis.yml only check changed files
Commit: ff38446e4155e613f61b9ccfdadc5141796dba1d
https://github.com/ehb54/ultrascan3/commit/ff38446e4155e613f61b9ccfdadc5141796dba1d
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-02 (Tue, 02 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
fix static-analysis.yml env variable handling
Commit: 44dc6b5ad0d3a3b1288a71a6096e71bcf767d2fb
https://github.com/ehb54/ultrascan3/commit/44dc6b5ad0d3a3b1288a71a6096e71bcf767d2fb
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-02 (Tue, 02 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
fix static-analysis.yml env variable handling
Commit: ef4c4e8e42954ff80a0ef6df92e9b990b7edaa68
https://github.com/ehb54/ultrascan3/commit/ef4c4e8e42954ff80a0ef6df92e9b990b7edaa68
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-02 (Tue, 02 Sep 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
M .github/workflows/static-analysis.yml
M .github/workflows/unit-tests.yml
Log Message:
-----------
mod workflow triggers to push or pr on master only
Commit: 42e26337f0dd52027b91e41ba3af0f9e1b626a24
https://github.com/ehb54/ultrascan3/commit/42e26337f0dd52027b91e41ba3af0f9e1b626a24
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-04 (Thu, 04 Sep 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
M .gitignore
R admin/codeql/custom-queries/cpp/codeql-pack.yml
R admin/codeql/custom-queries/cpp/find-unused-functions.ql
M gui/CMakeLists.txt
M gui/us_buffer_gui.cpp
M gui/us_data_loader.cpp
M gui/us_load_auc.cpp
M gui/us_loadable_noise.cpp
R gui/us_model_editor.cpp
R gui/us_model_editor.h
M gui/us_model_gui.cpp
M gui/us_model_loader.h
M gui/us_noise_loader.h
M programs/us_2dsa/us_2dsa.cpp
M programs/us_edit/us_edit.h
M utils/us_xpn_data.cpp
Log Message:
-----------
code cleanup before PR review
Commit: 895bcceea66cf95608da4f456620659d8e9517d5
https://github.com/ehb54/ultrascan3/commit/895bcceea66cf95608da4f456620659d8e9517d5
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-09-04 (Thu, 04 Sep 2025)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M utils/us_ana_profile.cpp
Log Message:
-----------
Merge pull request #260 from ehb54/master
commit update
Commit: 19e27c3ec7093c10f143441101c85d0af09b12ac
https://github.com/ehb54/ultrascan3/commit/19e27c3ec7093c10f143441101c85d0af09b12ac
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-05 (Fri, 05 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
mod: better reporting of critical issues
Commit: 3d25a66f7dcdd4e3a849f5ea31ae253f22c303be
https://github.com/ehb54/ultrascan3/commit/3d25a66f7dcdd4e3a849f5ea31ae253f22c303be
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-05 (Fri, 05 Sep 2025)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M utils/us_ana_profile.cpp
Log Message:
-----------
Merge remote-tracking branch 'origin/aaron-dev-test-utils' into aaron-dev-test-utils
Commit: eaf7d5bc8dae71e71e890cbec10deb318fe0862c
https://github.com/ehb54/ultrascan3/commit/eaf7d5bc8dae71e71e890cbec10deb318fe0862c
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-05 (Fri, 05 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
mod: artifact upload fix
Commit: f04888d7116e9c5498dd5a316307e9f4dc238d40
https://github.com/ehb54/ultrascan3/commit/f04888d7116e9c5498dd5a316307e9f4dc238d40
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-06 (Sat, 06 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
fix: critical static analysis only
Commit: d9ed24af5742fb54910d7c1d9873b57c528b4661
https://github.com/ehb54/ultrascan3/commit/d9ed24af5742fb54910d7c1d9873b57c528b4661
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-06 (Sat, 06 Sep 2025)
Changed paths:
M CMakeLists.txt
M admin/cmake/FindQwt.cmake
M gui/CMakeLists.txt
M programs/us_autoflow_analysis/CMakeLists.txt
M programs/us_com_project/CMakeLists.txt
M programs/us_com_project_academic/CMakeLists.txt
M programs/us_experiment/CMakeLists.txt
M programs/us_fematch/CMakeLists.txt
M programs/us_fit_meniscus/CMakeLists.txt
M programs/us_mwl_species_fit/CMakeLists.txt
M programs/us_protocol_dev/CMakeLists.txt
M programs/us_query_rmsd/CMakeLists.txt
M programs/us_reporter_gmp/CMakeLists.txt
M qwtplot3d/CMakeLists.txt
M test/utils/test_us_settings.cpp
M utils/CMakeLists.txt
Log Message:
-----------
mod: address review comments
Commit: a4fcd0c5999879b9af70342cbf2a4d40b9d2b803
https://github.com/ehb54/ultrascan3/commit/a4fcd0c5999879b9af70342cbf2a4d40b9d2b803
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-21 (Sun, 21 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
M gui/us_scan_excl_gui.h
M programs/us_analysis_profile/us_analysis_profile.cpp
M utils/us_ana_profile.cpp
M utils/us_ana_profile.h
Log Message:
-----------
GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 1246e6e3724e8a382585cc65e0208d3008bfbeeb
https://github.com/ehb54/ultrascan3/commit/1246e6e3724e8a382585cc65e0208d3008bfbeeb
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
Log Message:
-----------
[1a]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 5e6c7f858d8e6163099c500c970c02e54801243b
https://github.com/ehb54/ultrascan3/commit/5e6c7f858d8e6163099c500c970c02e54801243b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[2]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 5c98f81ac04ec7e465bdc36d6c858c27e3f146a1
https://github.com/ehb54/ultrascan3/commit/5c98f81ac04ec7e465bdc36d6c858c27e3f146a1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[3]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 5edb9ce91335769271fb5f593482a97dc4233059
https://github.com/ehb54/ultrascan3/commit/5edb9ce91335769271fb5f593482a97dc4233059
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[4]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 9aff495b37873080961f8c231a3ce673377f80d3
https://github.com/ehb54/ultrascan3/commit/9aff495b37873080961f8c231a3ce673377f80d3
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[5]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 1351f83ecb06b104ec53c3eac4dfa8e1deb9e008
https://github.com/ehb54/ultrascan3/commit/1351f83ecb06b104ec53c3eac4dfa8e1deb9e008
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[5a]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 321a8cba345ec3c3f2187e0ba10f28376fd49a3e
https://github.com/ehb54/ultrascan3/commit/321a8cba345ec3c3f2187e0ba10f28376fd49a3e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit_main.cpp
Log Message:
-----------
[5b-TEST]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 373ac0ac501856ea0df8f4f579f953d89ec810b0
https://github.com/ehb54/ultrascan3/commit/373ac0ac501856ea0df8f4f579f953d89ec810b0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[6b-TEST]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: ea3905ba9097c5eed14e034d6656fd0c84dff988
https://github.com/ehb54/ultrascan3/commit/ea3905ba9097c5eed14e034d6656fd0c84dff988
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit_main.cpp
Log Message:
-----------
[6b-TEST- restore]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: ed8dbfb27ca0afd51e92c0717d6e05536217b8b4
https://github.com/ehb54/ultrascan3/commit/ed8dbfb27ca0afd51e92c0717d6e05536217b8b4
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[7-TEST- restore]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 905f41462ec9dab9667e915d639af2970e21a7a4
https://github.com/ehb54/ultrascan3/commit/905f41462ec9dab9667e915d639af2970e21a7a4
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
Log Message:
-----------
GMP | 1. EXP.: AProfile && 4. EDIT -- [proper settings of min/max for scan_beg|nth|end for different optics systems] init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 671b8e4d0e4951014a52280942d6a6c9712f14fa
https://github.com/ehb54/ultrascan3/commit/671b8e4d0e4951014a52280942d6a6c9712f14fa
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit_main.cpp
Log Message:
-----------
GMP | 1. EXP.: AProfile && 4. EDIT -- [UNIT TEST for multi-channel run] init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: d584fa48438a0f9d744b750a6abe23533cc48b52
https://github.com/ehb54/ultrascan3/commit/d584fa48438a0f9d744b750a6abe23533cc48b52
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit_main.cpp
Log Message:
-----------
GMP | 1. EXP.: AProfile && 4. EDIT -- [RESTORE--UNIT TEST for multi-channel run] init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 84f86b86f77bbcd33e113217d09cbda59701b58b
https://github.com/ehb54/ultrascan3/commit/84f86b86f77bbcd33e113217d09cbda59701b58b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[DEBUGS]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 8ecca10f20a347fd906905b16f8e85ef5afff22a
https://github.com/ehb54/ultrascan3/commit/8ecca10f20a347fd906905b16f8e85ef5afff22a
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[1 DEBUGS]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: fe9b9031b3af683efa02792cf18ca46a51d376d8
https://github.com/ehb54/ultrascan3/commit/fe9b9031b3af683efa02792cf18ca46a51d376d8
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[2 DEBUGS]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 4c16cc30bec6d2d9ea234a0ad826339c18f1dc27
https://github.com/ehb54/ultrascan3/commit/4c16cc30bec6d2d9ea234a0ad826339c18f1dc27
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
GMP | 1. EXP.: AProfile && 4. EDIT -- treat scan exclusion differently for ABDE vs. VELOCITY types (ABDE - usually only last scan remains for each triple, ensured manually; VEL. - based on AProfile's settings beg|nth|end)...
Commit: dd3e9be9669f28156c33235c7e73db3040c614a5
https://github.com/ehb54/ultrascan3/commit/dd3e9be9669f28156c33235c7e73db3040c614a5
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M CMakeLists.txt
Log Message:
-----------
Update CMakeLists.txt
Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Commit: 93c11d987df52db6a1d9484f4f49a7acb54bd4dc
https://github.com/ehb54/ultrascan3/commit/93c11d987df52db6a1d9484f4f49a7acb54bd4dc
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M CMakeLists.txt
Log Message:
-----------
Update CMakeLists.txt
Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Commit: ea99232fad84d9c9e2e785ee18794694bb22b883
https://github.com/ehb54/ultrascan3/commit/ea99232fad84d9c9e2e785ee18794694bb22b883
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M utils/CMakeLists.txt
Log Message:
-----------
Update utils/CMakeLists.txt
Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Commit: a1344544e53b2158a855ac3ddb3296bbb15d21e0
https://github.com/ehb54/ultrascan3/commit/a1344544e53b2158a855ac3ddb3296bbb15d21e0
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M gui/CMakeLists.txt
Log Message:
-----------
Update gui/CMakeLists.txt
Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Commit: 6115f78b236f317ecc7ce852c9541d8ac10084e4
https://github.com/ehb54/ultrascan3/commit/6115f78b236f317ecc7ce852c9541d8ac10084e4
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M test/utils/CMakeLists.txt
Log Message:
-----------
Update test/utils/CMakeLists.txt
Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Commit: b1ff389cba607cd5f34556fb6945f050ad099ff8
https://github.com/ehb54/ultrascan3/commit/b1ff389cba607cd5f34556fb6945f050ad099ff8
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-25 (Thu, 25 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...
Commit: b557af349d02a148cef58c38976319f129cf4afa
https://github.com/ehb54/ultrascan3/commit/b557af349d02a148cef58c38976319f129cf4afa
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-25 (Thu, 25 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
[1]GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...
Commit: 57f3b61a10ffe0edcfdee555dbf12a7a6d15dc11
https://github.com/ehb54/ultrascan3/commit/57f3b61a10ffe0edcfdee555dbf12a7a6d15dc11
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-25 (Thu, 25 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[1]GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...
Commit: 825febd6fda9e31b55b9c0e13a0f2af701b3c6e0
https://github.com/ehb54/ultrascan3/commit/825febd6fda9e31b55b9c0e13a0f2af701b3c6e0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-25 (Thu, 25 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[3]GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...
Commit: 4f9217705b688c38c3e420a609c2692c23a7e160
https://github.com/ehb54/ultrascan3/commit/4f9217705b688c38c3e420a609c2692c23a7e160
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-25 (Thu, 25 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[4]GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...
Commit: f8379662ac83a104ca49b29cc3b5a7f830944d05
https://github.com/ehb54/ultrascan3/commit/f8379662ac83a104ca49b29cc3b5a7f830944d05
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-25 (Thu, 25 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[5]GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...
Commit: e87ab944bf93815dda5842e3dadee3249c11a52c
https://github.com/ehb54/ultrascan3/commit/e87ab944bf93815dda5842e3dadee3249c11a52c
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-25 (Thu, 25 Sep 2025)
Changed paths:
M programs/CMakeLists.txt
M test-docker.sh
M test/utils/CMakeLists.txt
M test/utils/test_us_vector.cpp
Log Message:
-----------
fix: cmake collision during build
Commit: 4a401e5be566119b5510674930f3b4365211a052
https://github.com/ehb54/ultrascan3/commit/4a401e5be566119b5510674930f3b4365211a052
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-25 (Thu, 25 Sep 2025)
Changed paths:
M programs/CMakeLists.txt
Log Message:
-----------
fix: add QWT to us_program_common
Commit: 036113902d7405af0d641ad3afb98b2010cef02f
https://github.com/ehb54/ultrascan3/commit/036113902d7405af0d641ad3afb98b2010cef02f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-26 (Fri, 26 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit_main.cpp
Log Message:
-----------
[unit test for multi-channel case] GMP | 4. EDIT -- treat scan exclusion differently for ABDE vs. VELOCITY types (ABDE - usually only last scan remains for each triple, ensured manually; VEL. - based on AProfile's settings beg|nth|end)...
Commit: 2e456f0922765ab66ffb5844fc6ef570a37ce431
https://github.com/ehb54/ultrascan3/commit/2e456f0922765ab66ffb5844fc6ef570a37ce431
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-09-26 (Fri, 26 Sep 2025)
Changed paths:
A admin/pam/pam_no_ad/Makefile
A admin/pam/pam_no_ad/README.md
A admin/pam/pam_no_ad/files/mariadb
A admin/pam/pam_no_ad/files/php
A admin/pam/pam_no_ad/files/sssd.conf
A admin/pam/pam_no_ad/files/system-auth-nosss
A admin/pam/pam_no_ad/pam_auth_pamtester.php
A admin/pam/pam_no_ad/pam_auth_test.php
Log Message:
-----------
Merge pull request #225 from ehb54/ehb54-issue-496
PAM for linux password for php
Commit: 0fa81d8ac6c3fc80cbfb121038e9a6a0cde634bf
https://github.com/ehb54/ultrascan3/commit/0fa81d8ac6c3fc80cbfb121038e9a6a0cde634bf
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-26 (Fri, 26 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit_main.cpp
Log Message:
-----------
[REstore form -- unit test for multi-channel case] GMP | 4. EDIT -- treat scan exclusion differently for ABDE vs. VELOCITY types (ABDE - usually only last scan remains for each triple, ensured manually; VEL. - based on AProfile's settings beg|nth|end)...
Commit: 154500215bfe391bf9dd7fda43456fe170c3c834
https://github.com/ehb54/ultrascan3/commit/154500215bfe391bf9dd7fda43456fe170c3c834
Author: saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-09-26 (Fri, 26 Sep 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: update the program GUI to get the cusotm grid from the users
Commit: 42b30b23222d6e9b070861a382ebe34ad77611ab
https://github.com/ehb54/ultrascan3/commit/42b30b23222d6e9b070861a382ebe34ad77611ab
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-26 (Fri, 26 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | 6. REPORT -- do not display scan exclusion settings Scan section if optics type not used...
Commit: 9f8fa54c2859fc4a8c4f996ef37443963f0e4ab2
https://github.com/ehb54/ultrascan3/commit/9f8fa54c2859fc4a8c4f996ef37443963f0e4ab2
Author: saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-09-26 (Fri, 26 Sep 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: add function to parse a grid file
Commit: f6b215b4f73633db8bee542cefd88da89761620b
https://github.com/ehb54/ultrascan3/commit/f6b215b4f73633db8bee542cefd88da89761620b
Author: saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-09-26 (Fri, 26 Sep 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
Log Message:
-----------
us_grid_editor: save the user grid model locally and on DB
Commit: 4ec94c4a344d53369ca022d39c166df3b0859490
https://github.com/ehb54/ultrascan3/commit/4ec94c4a344d53369ca022d39c166df3b0859490
Author: saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-09-27 (Sat, 27 Sep 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
fixed the issue with resetting to the default after pasrsing the CSV file. Refine the functions to reload the model from DB and local drive
Commit: f286c4ffff8050ccb898b5446f3915031c6b7585
https://github.com/ehb54/ultrascan3/commit/f286c4ffff8050ccb898b5446f3915031c6b7585
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-09-27 (Sat, 27 Sep 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
Merge pull request #264 from samo38/issue_563
Issue 563: Custom Grid Program
Commit: e3282fcfa778c046776d3abf2a718a9617230b4d
https://github.com/ehb54/ultrascan3/commit/e3282fcfa778c046776d3abf2a718a9617230b4d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-29 (Mon, 29 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP | 6. REPORT -- do not specify details on Scan exlusions of there were no any...
Commit: 8a112ba9e5ae7859d58f117c486f2e52cbba2899
https://github.com/ehb54/ultrascan3/commit/8a112ba9e5ae7859d58f117c486f2e52cbba2899
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-29 (Mon, 29 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[1]GMP | 6. REPORT -- do not specify details on Scan exlusions of there were no any...
Commit: d1287da6bdde6dcb79acc019617ea24b5d93d410
https://github.com/ehb54/ultrascan3/commit/d1287da6bdde6dcb79acc019617ea24b5d93d410
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-29 (Mon, 29 Sep 2025)
Changed paths:
A admin/pam/pam_no_ad/Makefile
A admin/pam/pam_no_ad/README.md
A admin/pam/pam_no_ad/files/mariadb
A admin/pam/pam_no_ad/files/php
A admin/pam/pam_no_ad/files/sssd.conf
A admin/pam/pam_no_ad/files/system-auth-nosss
A admin/pam/pam_no_ad/pam_auth_pamtester.php
A admin/pam/pam_no_ad/pam_auth_test.php
M gui/us_analysis_base2.cpp
M gui/us_model_loader.cpp
M programs/us_2dsa/us_2dsa.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_fematch/us_resplot_fem.cpp
M programs/us_fit_meniscus/us_fit_meniscus.cpp
M programs/us_fit_meniscus/us_fit_meniscus_main.cpp
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
M utils/us_ana_profile.cpp
M utils/us_ana_profile.h
M utils/us_astfem_math.cpp
M utils/us_astfem_math.h
Log Message:
-----------
Merge pull request #265 from ehb54/master
add master
Commit: 8dff3550c25c2827799de8e3f245f1f34a9044ab
https://github.com/ehb54/ultrascan3/commit/8dff3550c25c2827799de8e3f245f1f34a9044ab
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-29 (Mon, 29 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
[2]GMP | 6. REPORT -- do not specify details on Scan exlusions of there were no any...
Commit: d927f1c7acffd7436189c83726111d960cbd1e2d
https://github.com/ehb54/ultrascan3/commit/d927f1c7acffd7436189c83726111d960cbd1e2d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-30 (Tue, 30 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
Log Message:
-----------
GMP | 1. EXP.:APorile:ScanExcls. -- do not allow remainig scans to be less than 3 per channel;restore otherwise...
Commit: 4c3a97f136b46591a7381b85fb726ea2fb87f7f2
https://github.com/ehb54/ultrascan3/commit/4c3a97f136b46591a7381b85fb726ea2fb87f7f2
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-30 (Tue, 30 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
M gui/us_scan_excl_gui.h
Log Message:
-----------
GMP | 1. EXP.:APorile:ScanExcls. -- [Modified logic for--] do not allow remainig scans to be less than 3 per channel;restore otherwise...
Commit: 7c65e196caeaf47f46d74fe305d0dec5c3f6f4e1
https://github.com/ehb54/ultrascan3/commit/7c65e196caeaf47f46d74fe305d0dec5c3f6f4e1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-30 (Tue, 30 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
Log Message:
-----------
[1]GMP | 1. EXP.:APorile:ScanExcls. -- [Modified logic for--] do not allow remainig scans to be less than 3 per channel;restore otherwise...
Commit: 07f7d5c89032aa8dac1c13fe611e51d8e076cfde
https://github.com/ehb54/ultrascan3/commit/07f7d5c89032aa8dac1c13fe611e51d8e076cfde
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-30 (Tue, 30 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
Log Message:
-----------
GMP | 1. EXP.:APorile:ScanExcls. -- backward compatibility with older protocols with no nth scan excl. settings...
Commit: 232008ddbb42fa37d28890542961579241726f13
https://github.com/ehb54/ultrascan3/commit/232008ddbb42fa37d28890542961579241726f13
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-30 (Tue, 30 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
Log Message:
-----------
[1]GMP | 1. EXP.:APorile:ScanExcls. -- backward compatibility with older protocols with no nth scan excl. settings...
Commit: 3eb9ae51c6a5f7fc763508aa6e322281d3540f3b
https://github.com/ehb54/ultrascan3/commit/3eb9ae51c6a5f7fc763508aa6e322281d3540f3b
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-02 (Thu, 02 Oct 2025)
Changed paths:
M test/utils/CMakeLists.txt
Log Message:
-----------
fix: duplicate include removed
Commit: 003fcead31be5da3e4a5744bd8b5a9a3adb9686d
https://github.com/ehb54/ultrascan3/commit/003fcead31be5da3e4a5744bd8b5a9a3adb9686d
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-10-02 (Thu, 02 Oct 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
M gui/us_scan_excl_gui.h
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M utils/us_ana_profile.cpp
M utils/us_ana_profile.h
Log Message:
-----------
Merge pull request #267 from ehb54/alexey-dev-issue556
Alexey dev issue556: Scan Exclusion Profile Editor for AProfile in GMP #556
Commit: 9b2e06a5e4a371044a913065222c7d91603e0085
https://github.com/ehb54/ultrascan3/commit/9b2e06a5e4a371044a913065222c7d91603e0085
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-02 (Thu, 02 Oct 2025)
Changed paths:
M programs/us_integral/us_integral.cpp
Log Message:
-----------
US_intargal -- avoid loading editProfiles...
Commit: abfa96706807a26b5b0642ed078a97acf01a3e18
https://github.com/ehb54/ultrascan3/commit/abfa96706807a26b5b0642ed078a97acf01a3e18
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-02 (Thu, 02 Oct 2025)
Changed paths:
M programs/us_integral/us_integral.cpp
Log Message:
-----------
US_intergal -- restore editProfiles read; add debugs...
Commit: d712bbbb0ceb306e036f428d4245c0e3b87c097b
https://github.com/ehb54/ultrascan3/commit/d712bbbb0ceb306e036f428d4245c0e3b87c097b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-02 (Thu, 02 Oct 2025)
Changed paths:
M programs/us_integral/us_integral.cpp
Log Message:
-----------
[1]US_intergal -- restore editProfiles read; add debugs...
Commit: 088595bbbb4e35e890cb8d2bf308945e0333f3f1
https://github.com/ehb54/ultrascan3/commit/088595bbbb4e35e890cb8d2bf308945e0333f3f1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-02 (Thu, 02 Oct 2025)
Changed paths:
M programs/us_integral/us_integral.cpp
Log Message:
-----------
[2]US_intergal -- restore editProfiles read; add debugs...
Commit: 15343601bc0774d196184c33adbddefab8430a11
https://github.com/ehb54/ultrascan3/commit/15343601bc0774d196184c33adbddefab8430a11
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-02 (Thu, 02 Oct 2025)
Changed paths:
M programs/us_integral/us_integral.cpp
Log Message:
-----------
[3]US_intergal -- create curves' labels from the model's desc...
Commit: d62e7b57ef0ea16676a289087f4e4ba7a92ef3f8
https://github.com/ehb54/ultrascan3/commit/d62e7b57ef0ea16676a289087f4e4ba7a92ef3f8
Author: HabGab <gabirh at myumanitoba.ca>
Date: 2025-10-03 (Fri, 03 Oct 2025)
Changed paths:
M programs/us_integral/us_integral.cpp
Log Message:
-----------
Merge pull request #268 from ehb54/alexey-dev-issue562
Alexey dev issue562: Enable plotting CG-SG integral distr.
Commit: 8b4d2dc93db3c9ce00f4cfcebac25a50f25ce7f2
https://github.com/ehb54/ultrascan3/commit/8b4d2dc93db3c9ce00f4cfcebac25a50f25ce7f2
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-07 (Tue, 07 Oct 2025)
Changed paths:
M CMakeLists.txt
M programs/CMakeLists.txt
M programs/us_autoflow_analysis/CMakeLists.txt
M programs/us_fematch/CMakeLists.txt
M programs/us_manage_data/us_manage_data.cpp
M programs/us_ramp/us_ramp_gui.cpp
M qwtplot3d/CMakeLists.txt
M test/utils/test_us_astfem_math.cpp
R test/utils/test_us_astfem_rsa.cpp
Log Message:
-----------
Consolidated commit after cleanup
Commit: 934f494e4683d95677c5a7051705426df529cf13
https://github.com/ehb54/ultrascan3/commit/934f494e4683d95677c5a7051705426df529cf13
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-08 (Wed, 08 Oct 2025)
Changed paths:
A admin/pam/pam_no_ad/Makefile
A admin/pam/pam_no_ad/README.md
A admin/pam/pam_no_ad/files/mariadb
A admin/pam/pam_no_ad/files/php
A admin/pam/pam_no_ad/files/sssd.conf
A admin/pam/pam_no_ad/files/system-auth-nosss
A admin/pam/pam_no_ad/pam_auth_pamtester.php
A admin/pam/pam_no_ad/pam_auth_test.php
M doc/manual/advanced_config.body
M gui/us_analysis_base2.cpp
M gui/us_model_loader.cpp
M gui/us_scan_excl_gui.cpp
M gui/us_scan_excl_gui.h
M programs/us_2dsa/us_2dsa.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_fematch/us_resplot_fem.cpp
M programs/us_fit_meniscus/us_fit_meniscus.cpp
M programs/us_fit_meniscus/us_fit_meniscus_main.cpp
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M programs/us_integral/us_integral.cpp
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
M utils/us_ana_profile.cpp
M utils/us_ana_profile.h
M utils/us_astfem_math.cpp
M utils/us_astfem_math.h
Log Message:
-----------
Merge remote-tracking branch 'origin/master' into aaron-dev-test-utils
Commit: 4e54cb0bd0e5eda0aebea648780b89b67b47d482
https://github.com/ehb54/ultrascan3/commit/4e54cb0bd0e5eda0aebea648780b89b67b47d482
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-10-08 (Wed, 08 Oct 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
A .github/workflows/static-analysis.yml
A .github/workflows/unit-tests.yml
M .gitignore
M CMakeLists.txt
A admin/cmake/FindQwt.cmake
A admin/cmake/us_version.h.in
A admin/test/docker/Dockerfile
R doc/manual/README
A doc/manual/README.md
A gui/CMakeLists.txt
M gui/us_abstractrotor_gui.cpp
M gui/us_buffer_gui.cpp
M gui/us_data_loader.cpp
M gui/us_failed_gmp_run_gui.cpp
M gui/us_load_auc.cpp
M gui/us_loadable_noise.cpp
R gui/us_model_editor.cpp
R gui/us_model_editor.h
M gui/us_model_gui.cpp
M gui/us_model_gui.h
M gui/us_model_loader.cpp
M gui/us_model_loader.h
M gui/us_noise_loader.cpp
M gui/us_noise_loader.h
M gui/us_project_gui.cpp
M gui/us_rotor_gui.cpp
M gui/us_solution_gui.cpp
A programs/CMakeLists.txt
M programs/us/us.cpp
M programs/us/us_win_data.cpp
M programs/us_2dsa/us_2dsa.cpp
M programs/us_astfem_sim/us_clipdata.cpp
A programs/us_autoflow_analysis/CMakeLists.txt
A programs/us_com_project/CMakeLists.txt
A programs/us_com_project_academic/CMakeLists.txt
M programs/us_config/us_database.cpp
M programs/us_config/us_xpnhost_db.cpp
M programs/us_config/us_xpnhost_db.h
M programs/us_convert/us_get_run.cpp
M programs/us_convert/us_select_triples.h
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_ddist_combine.h
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
A programs/us_experiment/CMakeLists.txt
M programs/us_experiment/us_experiment_gui_optima.cpp
A programs/us_fematch/CMakeLists.txt
M programs/us_fematch/us_fematch.cpp
A programs/us_fit_meniscus/CMakeLists.txt
M programs/us_ga_init/us_solutedata.cpp
M programs/us_integral/us_integral.cpp
M programs/us_manage_data/us_manage_data.cpp
A programs/us_mwl_species_fit/CMakeLists.txt
M programs/us_mwlr_viewer/us_mwl_run.cpp
M programs/us_pcsa/us_adv_analysis_pc.cpp
M programs/us_pcsa/us_analysis_control_pc.cpp
M programs/us_pcsa/us_mrecs_loader.cpp
M programs/us_pcsa/us_mrecs_loader.h
M programs/us_pcsa/us_pcsa.cpp
M programs/us_pcsa/us_pcsa_process.cpp
M programs/us_pcsa/us_rpscan.cpp
A programs/us_protocol_dev/CMakeLists.txt
A programs/us_query_rmsd/CMakeLists.txt
M programs/us_ramp/us_experiment_gui_ra.cpp
M programs/us_ramp/us_experiment_ra.cpp
M programs/us_ramp/us_experiment_ra.h
M programs/us_ramp/us_get_dbrun_ra.cpp
M programs/us_ramp/us_ramp_gui.cpp
M programs/us_reporter/us_reporter.cpp
A programs/us_reporter_gmp/CMakeLists.txt
M programs/us_xpn_viewer/us_xpn_run_auc.cpp
M programs/us_xpn_viewer/us_xpn_run_raw.cpp
A qwtplot3d/CMakeLists.txt
A test-docker.sh
A test/README
A test/common/qt_test_base.cpp
A test/common/qt_test_base.h
M test/utils/CMakeLists.txt
A test/utils/mock/mock_us_db2.h
A test/utils/test_mock_us_db2.cpp
A test/utils/test_us_ana_profile.cpp
A test/utils/test_us_analyte.cpp
A test/utils/test_us_astfem_math.cpp
A test/utils/test_us_buffer.cpp
A test/utils/test_us_crc.cpp
A test/utils/test_us_crypto.cpp
A test/utils/test_us_dataIO.cpp
M test/utils/test_us_datafiles.cpp
R test/utils/test_us_datafiles.h
A test/utils/test_us_db2.cpp
A test/utils/test_us_math2.cpp
A test/utils/test_us_matrix.cpp
A test/utils/test_us_memory.cpp
A test/utils/test_us_model.cpp
A test/utils/test_us_project.cpp
A test/utils/test_us_settings.cpp
R test/utils/test_us_simparams.cpp
R test/utils/test_us_simparams.h
A test/utils/test_us_simparms.cpp
A test/utils/test_us_stiffbase.cpp
A test/utils/test_us_time_state.cpp
A test/utils/test_us_timer.cpp
M test/utils/test_us_util.cpp
R test/utils/test_us_util.h
M test/utils/test_us_utils_main.cpp
A test/utils/test_us_vector.cpp
M us_somo/develop/include/us_zeno_cxx.h
M us_somo/develop/include/us_zeno_cxx_nf.h
M utils/CMakeLists.txt
A utils/ius_db2.h
M utils/us_ana_profile.cpp
M utils/us_analyte.cpp
M utils/us_analyte.h
M utils/us_astfem_rsa.cpp
M utils/us_buffer.cpp
M utils/us_buffer.h
M utils/us_cfa_data.cpp
M utils/us_dataIO.cpp
M utils/us_dataIO.h
M utils/us_db2.cpp
M utils/us_db2.h
M utils/us_eprofile.cpp
M utils/us_eprofile.h
M utils/us_hardware.cpp
M utils/us_hardware.h
M utils/us_lamm_astfvm.cpp
M utils/us_model.cpp
M utils/us_model.h
M utils/us_noise.cpp
M utils/us_noise.h
M utils/us_project.cpp
M utils/us_project.h
M utils/us_report.cpp
M utils/us_report.h
M utils/us_rotor.cpp
M utils/us_rotor.h
M utils/us_simparms.cpp
M utils/us_simparms.h
M utils/us_solution.cpp
M utils/us_solution.h
M utils/us_solution_vals.cpp
M utils/us_solution_vals.h
M utils/us_solve_sim.cpp
M utils/us_solve_sim.h
M utils/us_time_state.cpp
M utils/us_time_state.h
Log Message:
-----------
Merge pull request #234 from ehb54/aaron-dev-test-utils
Add: google mock framework, static code analysis
Commit: af2045563aa019e69852ce42d22235076e6d33f7
https://github.com/ehb54/ultrascan3/commit/af2045563aa019e69852ce42d22235076e6d33f7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-09 (Thu, 09 Oct 2025)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
Log Message:
-----------
GMP: 1. EXP. -- for dataDisk option, do not block submission due to disconnected Optima; block otherwise...
Commit: 34e1993274025890c5cceda224c19973aa5b2ae2
https://github.com/ehb54/ultrascan3/commit/34e1993274025890c5cceda224c19973aa5b2ae2
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-10-10 (Fri, 10 Oct 2025)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
Log Message:
-----------
Merge pull request #271 from ehb54/alexey-dev-issue576
GMP: 1. EXP. -- for dataDisk option, do not block submission due to disconnected Optima; block otherwise..
Commit: b1873114bd77180edf8229767b79afb615d0c045
https://github.com/ehb54/ultrascan3/commit/b1873114bd77180edf8229767b79afb615d0c045
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-10-11 (Sat, 11 Oct 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
A .github/workflows/static-analysis.yml
A .github/workflows/unit-tests.yml
M .gitignore
M CMakeLists.txt
A admin/cmake/FindQwt.cmake
A admin/cmake/us_version.h.in
A admin/pam/pam_no_ad/Makefile
A admin/pam/pam_no_ad/README.md
A admin/pam/pam_no_ad/files/mariadb
A admin/pam/pam_no_ad/files/php
A admin/pam/pam_no_ad/files/sssd.conf
A admin/pam/pam_no_ad/files/system-auth-nosss
A admin/pam/pam_no_ad/pam_auth_pamtester.php
A admin/pam/pam_no_ad/pam_auth_test.php
A admin/test/docker/Dockerfile
R doc/manual/README
A doc/manual/README.md
A gui/CMakeLists.txt
M gui/us_abstractrotor_gui.cpp
M gui/us_buffer_gui.cpp
M gui/us_data_loader.cpp
M gui/us_failed_gmp_run_gui.cpp
M gui/us_load_auc.cpp
M gui/us_loadable_noise.cpp
R gui/us_model_editor.cpp
R gui/us_model_editor.h
M gui/us_model_gui.cpp
M gui/us_model_gui.h
M gui/us_model_loader.cpp
M gui/us_model_loader.h
M gui/us_noise_loader.cpp
M gui/us_noise_loader.h
M gui/us_project_gui.cpp
M gui/us_rotor_gui.cpp
M gui/us_scan_excl_gui.cpp
M gui/us_scan_excl_gui.h
M gui/us_solution_gui.cpp
A programs/CMakeLists.txt
M programs/us/us.cpp
M programs/us/us_win_data.cpp
M programs/us_2dsa/us_2dsa.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_astfem_sim/us_clipdata.cpp
A programs/us_autoflow_analysis/CMakeLists.txt
A programs/us_com_project/CMakeLists.txt
A programs/us_com_project_academic/CMakeLists.txt
M programs/us_config/us_database.cpp
M programs/us_config/us_xpnhost_db.cpp
M programs/us_config/us_xpnhost_db.h
M programs/us_convert/us_get_run.cpp
M programs/us_convert/us_select_triples.h
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_ddist_combine.h
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
A programs/us_experiment/CMakeLists.txt
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
A programs/us_fematch/CMakeLists.txt
M programs/us_fematch/us_fematch.cpp
A programs/us_fit_meniscus/CMakeLists.txt
M programs/us_ga_init/us_solutedata.cpp
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M programs/us_integral/us_integral.cpp
M programs/us_manage_data/us_manage_data.cpp
A programs/us_mwl_species_fit/CMakeLists.txt
M programs/us_mwlr_viewer/us_mwl_run.cpp
M programs/us_pcsa/us_adv_analysis_pc.cpp
M programs/us_pcsa/us_analysis_control_pc.cpp
M programs/us_pcsa/us_mrecs_loader.cpp
M programs/us_pcsa/us_mrecs_loader.h
M programs/us_pcsa/us_pcsa.cpp
M programs/us_pcsa/us_pcsa_process.cpp
M programs/us_pcsa/us_rpscan.cpp
A programs/us_protocol_dev/CMakeLists.txt
A programs/us_query_rmsd/CMakeLists.txt
M programs/us_ramp/us_experiment_gui_ra.cpp
M programs/us_ramp/us_experiment_ra.cpp
M programs/us_ramp/us_experiment_ra.h
M programs/us_ramp/us_get_dbrun_ra.cpp
M programs/us_ramp/us_ramp_gui.cpp
M programs/us_reporter/us_reporter.cpp
A programs/us_reporter_gmp/CMakeLists.txt
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_xpn_viewer/us_xpn_run_auc.cpp
M programs/us_xpn_viewer/us_xpn_run_raw.cpp
A qwtplot3d/CMakeLists.txt
A test-docker.sh
A test/README
A test/common/qt_test_base.cpp
A test/common/qt_test_base.h
M test/utils/CMakeLists.txt
A test/utils/mock/mock_us_db2.h
A test/utils/test_mock_us_db2.cpp
A test/utils/test_us_ana_profile.cpp
A test/utils/test_us_analyte.cpp
A test/utils/test_us_astfem_math.cpp
A test/utils/test_us_buffer.cpp
A test/utils/test_us_crc.cpp
A test/utils/test_us_crypto.cpp
A test/utils/test_us_dataIO.cpp
M test/utils/test_us_datafiles.cpp
R test/utils/test_us_datafiles.h
A test/utils/test_us_db2.cpp
A test/utils/test_us_math2.cpp
A test/utils/test_us_matrix.cpp
A test/utils/test_us_memory.cpp
A test/utils/test_us_model.cpp
A test/utils/test_us_project.cpp
A test/utils/test_us_settings.cpp
R test/utils/test_us_simparams.cpp
R test/utils/test_us_simparams.h
A test/utils/test_us_simparms.cpp
A test/utils/test_us_stiffbase.cpp
A test/utils/test_us_time_state.cpp
A test/utils/test_us_timer.cpp
M test/utils/test_us_util.cpp
R test/utils/test_us_util.h
M test/utils/test_us_utils_main.cpp
A test/utils/test_us_vector.cpp
M us_somo/develop/include/us_zeno_cxx.h
M us_somo/develop/include/us_zeno_cxx_nf.h
M utils/CMakeLists.txt
A utils/ius_db2.h
M utils/us_ana_profile.cpp
M utils/us_ana_profile.h
M utils/us_analyte.cpp
M utils/us_analyte.h
M utils/us_astfem_rsa.cpp
M utils/us_buffer.cpp
M utils/us_buffer.h
M utils/us_cfa_data.cpp
M utils/us_dataIO.cpp
M utils/us_dataIO.h
M utils/us_db2.cpp
M utils/us_db2.h
M utils/us_eprofile.cpp
M utils/us_eprofile.h
M utils/us_hardware.cpp
M utils/us_hardware.h
M utils/us_lamm_astfvm.cpp
M utils/us_model.cpp
M utils/us_model.h
M utils/us_noise.cpp
M utils/us_noise.h
M utils/us_project.cpp
M utils/us_project.h
M utils/us_report.cpp
M utils/us_report.h
M utils/us_rotor.cpp
M utils/us_rotor.h
M utils/us_simparms.cpp
M utils/us_simparms.h
M utils/us_solution.cpp
M utils/us_solution.h
M utils/us_solution_vals.cpp
M utils/us_solution_vals.h
M utils/us_solve_sim.cpp
M utils/us_solve_sim.h
M utils/us_time_state.cpp
M utils/us_time_state.h
Log Message:
-----------
Merge pull request #277 from ehb54/master
update lukas/us_xpn_viewer_timestate
Compare: https://github.com/ehb54/ultrascan3/compare/bb0aa9e39a0d...b1873114bd77
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