[us-commits] [ehb54/ultrascan3] af1a5c: Additional Unit Testing us_ana_profile, us_crc, us...
ehb54
noreply at github.com
Wed Oct 15 13:49:23 MDT 2025
Branch: refs/heads/ehb54-issue-533
Home: https://github.com/ehb54/ultrascan3
Commit: af1a5c8bc4252ae4bf9c3467711811c2f536d72f
https://github.com/ehb54/ultrascan3/commit/af1a5c8bc4252ae4bf9c3467711811c2f536d72f
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M CMakeLists.txt
M test/utils/CMakeLists.txt
A test/utils/test_us_ana_profile.cpp
A test/utils/test_us_ana_profile.h
A test/utils/test_us_crc.cpp
A test/utils/test_us_crc.h
A test/utils/test_us_crypto.cpp
A test/utils/test_us_crypto.h
A test/utils/test_us_dataIO.cpp
A test/utils/test_us_dataIO.h
A test/utils/test_us_math2.cpp
A test/utils/test_us_math2.h
A test/utils/test_us_matrix.cpp
A test/utils/test_us_matrix.h
M test/utils/test_us_utils_main.cpp
M utils/CMakeLists.txt
M utils/us_ana_profile.cpp
Log Message:
-----------
Additional Unit Testing us_ana_profile, us_crc, us_crypto, us_dataio, us_math2, and us_matrix.
Commit: 1408abf68cb2d299a8ad20905a1898d9f12c0958
https://github.com/ehb54/ultrascan3/commit/1408abf68cb2d299a8ad20905a1898d9f12c0958
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M CMakeLists.txt
M test/utils/CMakeLists.txt
M test/utils/test_us_crc.cpp
M test/utils/test_us_crc.h
M test/utils/test_us_math2.cpp
M test/utils/test_us_math2.h
M test/utils/test_us_matrix.cpp
A test/utils/test_us_simparms.cpp
A test/utils/test_us_simparms.h
M test/utils/test_us_utils_main.cpp
M utils/CMakeLists.txt
Log Message:
-----------
Tests pass locally except for TestUSMath2::test_linefit() and TestUSAnaProfile::testEqualityOperator() which have issues submitted to resolve.
Commit: f87d9a2ed4bbc9a4d91dd3543dbaf4b62edca765
https://github.com/ehb54/ultrascan3/commit/f87d9a2ed4bbc9a4d91dd3543dbaf4b62edca765
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M test/utils/CMakeLists.txt
A test/utils/test_us_memory.cpp
A test/utils/test_us_memory.h
A test/utils/test_us_settings.cpp
A test/utils/test_us_settings.h
A test/utils/test_us_time_state.cpp
A test/utils/test_us_time_state.h
M test/utils/test_us_utils_main.cpp
M utils/CMakeLists.txt
Log Message:
-----------
Add tests for us_memory, us_settings, and us_time_state
Commit: 4abb61bbcc128d9293b4ff30674448f285671ab1
https://github.com/ehb54/ultrascan3/commit/4abb61bbcc128d9293b4ff30674448f285671ab1
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M test/utils/CMakeLists.txt
A test/utils/test_us_analyte.cpp
A test/utils/test_us_analyte.h
A test/utils/test_us_db2.cpp
A test/utils/test_us_db2.h
M test/utils/test_us_utils_main.cpp
M utils/CMakeLists.txt
Log Message:
-----------
Add tests for us_analyte and us_db2
Commit: e9390c59f666fcc05efbd47251b28fe67c3e0b91
https://github.com/ehb54/ultrascan3/commit/e9390c59f666fcc05efbd47251b28fe67c3e0b91
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M test/utils/CMakeLists.txt
A test/utils/test_us_astfem_math.cpp
A test/utils/test_us_astfem_math.h
A test/utils/test_us_project.cpp
A test/utils/test_us_project.h
M test/utils/test_us_utils_main.cpp
M utils/CMakeLists.txt
Log Message:
-----------
Add tests for us_astfem_math and us_project
Commit: a9e23b7e83f8210188d4489c503430d9c26f97ee
https://github.com/ehb54/ultrascan3/commit/a9e23b7e83f8210188d4489c503430d9c26f97ee
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M CMakeLists.txt
M test/utils/CMakeLists.txt
A test/utils/mock/mock_us_db2.h
A test/utils/test_mock_us_db2.cpp
A test/utils/test_mock_us_db2.h
M test/utils/test_us_analyte.cpp
A test/utils/test_us_project_gtest.cpp
A test/utils/test_us_project_gtest.h
M test/utils/test_us_utils_main.cpp
M utils/us_db2.h
Log Message:
-----------
Add gtest
Commit: eaf6180d144d0c86dc4caec50879155740cc76e3
https://github.com/ehb54/ultrascan3/commit/eaf6180d144d0c86dc4caec50879155740cc76e3
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M test/utils/CMakeLists.txt
A test/utils/test_us_astfem_rsa.cpp
A test/utils/test_us_astfem_rsa.h
A test/utils/test_us_model.cpp
A test/utils/test_us_model.h
A test/utils/test_us_stiffbase.cpp
A test/utils/test_us_stiffbase.h
M utils/CMakeLists.txt
Log Message:
-----------
Add tests for us_astfem_rsa, us_model, and us_stiffbase
Commit: 824605af8d275da7234b0a9d7f3672a8c001ea43
https://github.com/ehb54/ultrascan3/commit/824605af8d275da7234b0a9d7f3672a8c001ea43
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M .github/workflows/codeql-analysis.yml
A admin/codeql/custom-queries/cpp/find-unused-functions.ql
M test/utils/CMakeLists.txt
M test/utils/mock/mock_us_db2.h
M test/utils/test_us_analyte.cpp
M test/utils/test_us_math2.cpp
M test/utils/test_us_project_gtest.cpp
M utils/us_db2.h
Log Message:
-----------
Rebase merge
Commit: 60e801e42c2edfe91afb422f4031c95eaae2d4da
https://github.com/ehb54/ultrascan3/commit/60e801e42c2edfe91afb422f4031c95eaae2d4da
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
A admin/codeql/custom-queries/cpp/codeql-pack.yml
M admin/codeql/custom-queries/cpp/find-unused-functions.ql
Log Message:
-----------
Update codeql custom query
Commit: 7b370a88e30b380b1e40382cecb82aa1310eba3f
https://github.com/ehb54/ultrascan3/commit/7b370a88e30b380b1e40382cecb82aa1310eba3f
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
A test/utils/test_us_buffer.cpp
M test/utils/test_us_datafiles.cpp
Log Message:
-----------
Add test_us_buffer.cpp
Commit: 363e32b18e6f47106c9dd75c7f1793511472a3b0
https://github.com/ehb54/ultrascan3/commit/363e32b18e6f47106c9dd75c7f1793511472a3b0
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
Add apt-get install libmysqlclient-dev
Commit: 77a89e083d64e4c862e61b9716a1e7d1f1892df4
https://github.com/ehb54/ultrascan3/commit/77a89e083d64e4c862e61b9716a1e7d1f1892df4
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M CMakeLists.txt
Log Message:
-----------
Update to find mysql during build
Commit: 69b88e6a47d8369f97892eddcbfa839473ce9120
https://github.com/ehb54/ultrascan3/commit/69b88e6a47d8369f97892eddcbfa839473ce9120
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M test/utils/test_us_db2.cpp
M test/utils/test_us_db2.h
Log Message:
-----------
removed query test
Commit: 3f7d4721cc43cb9f79fb187ebb5aa7f15babd257
https://github.com/ehb54/ultrascan3/commit/3f7d4721cc43cb9f79fb187ebb5aa7f15babd257
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-01 (Sun, 01 Sep 2024)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
run specific test
Commit: d84cc16735556c0d8fb706bc768a6a4dc10db9a8
https://github.com/ehb54/ultrascan3/commit/d84cc16735556c0d8fb706bc768a6a4dc10db9a8
Author: aaron <aaron at aucsolutions.com>
Date: 2024-09-03 (Tue, 03 Sep 2024)
Changed paths:
M test/utils/test_us_math2.cpp
Log Message:
-----------
test_us_math2 was updated after sigma calculation was verified.
Commit: 69b6016db937a41c6d364bda55101d76f5564bc6
https://github.com/ehb54/ultrascan3/commit/69b6016db937a41c6d364bda55101d76f5564bc6
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-06-09 (Mon, 09 Jun 2025)
Changed paths:
A admin/pam_auth_helper/README.md
A admin/pam_auth_helper/pam.d/php-helper
A admin/pam_auth_helper/pam_auth_helper.c
A admin/pam_auth_helper/pam_auth_test.php
Log Message:
-----------
PAM for linux password for php
Commit: 22b88019d6a64a92f89f361f6cfd6737cab591d9
https://github.com/ehb54/ultrascan3/commit/22b88019d6a64a92f89f361f6cfd6737cab591d9
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-06-09 (Mon, 09 Jun 2025)
Changed paths:
M admin/pam_auth_helper/README.md
Log Message:
-----------
Update README.md
Commit: e64cf5274f1d7302ca4582ea2e138b08a870e828
https://github.com/ehb54/ultrascan3/commit/e64cf5274f1d7302ca4582ea2e138b08a870e828
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-06-09 (Mon, 09 Jun 2025)
Changed paths:
A admin/pam_auth_helper/Makefile
Log Message:
-----------
PAM for linux password for php - makefile
Commit: 56f6b69169ad4e990282f20f3531d347cdca36bf
https://github.com/ehb54/ultrascan3/commit/56f6b69169ad4e990282f20f3531d347cdca36bf
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-06-12 (Thu, 12 Jun 2025)
Changed paths:
A admin/pam/pam_no_ad/Makefile
A admin/pam/pam_no_ad/README.md
A admin/pam/pam_no_ad/files/php
A admin/pam/pam_no_ad/files/sssd.conf
R admin/pam_auth_helper/Makefile
R admin/pam_auth_helper/README.md
R admin/pam_auth_helper/pam.d/php-helper
R admin/pam_auth_helper/pam_auth_helper.c
R admin/pam_auth_helper/pam_auth_test.php
Log Message:
-----------
PAM auth no AD/LDAP, Linux passwords only
Commit: 5050f341dbde4ea01ba7f0e3aa9862fbb5fbe6b9
https://github.com/ehb54/ultrascan3/commit/5050f341dbde4ea01ba7f0e3aa9862fbb5fbe6b9
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-06-12 (Thu, 12 Jun 2025)
Changed paths:
M gui/us_csv_loader.cpp
M gui/us_csv_loader.h
Log Message:
-----------
Merge pull request #226 from ehb54/master
merge master to issue branch
Commit: b16f0504f2f4404db161c55323d9df63622854fc
https://github.com/ehb54/ultrascan3/commit/b16f0504f2f4404db161c55323d9df63622854fc
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-06-12 (Thu, 12 Jun 2025)
Changed paths:
M admin/pam/pam_no_ad/README.md
Log Message:
-----------
Update README.md
Commit: bd0a2263e0e3493aaa08624c81fcbd820f172a1d
https://github.com/ehb54/ultrascan3/commit/bd0a2263e0e3493aaa08624c81fcbd820f172a1d
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-06-12 (Thu, 12 Jun 2025)
Changed paths:
A admin/pam/pam_no_ad/pam_auth_test.php
Log Message:
-----------
PAM for linux password for php - pam_auth_test.php
Commit: 1a4ce194b046f388b13ae0c04a5f361478f90700
https://github.com/ehb54/ultrascan3/commit/1a4ce194b046f388b13ae0c04a5f361478f90700
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-06-12 (Thu, 12 Jun 2025)
Changed paths:
M admin/pam/pam_no_ad/README.md
Log Message:
-----------
Update README.md
Commit: df89a15dee591af68573b8840c6f78586499c3a3
https://github.com/ehb54/ultrascan3/commit/df89a15dee591af68573b8840c6f78586499c3a3
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-06-12 (Thu, 12 Jun 2025)
Changed paths:
M admin/pam/pam_no_ad/pam_auth_test.php
Log Message:
-----------
PAM for linux password for php - pam_auth_test.php
Commit: c65ba3d71581de0a41ee41787e66c4026190dc18
https://github.com/ehb54/ultrascan3/commit/c65ba3d71581de0a41ee41787e66c4026190dc18
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-06-12 (Thu, 12 Jun 2025)
Changed paths:
M admin/pam/pam_no_ad/Makefile
A admin/pam/pam_no_ad/files/mariadb
M admin/pam/pam_no_ad/files/sssd.conf
A admin/pam/pam_no_ad/files/system-auth-nosss
Log Message:
-----------
pam - updated config
Commit: 93f3f88fd38b866aad319181f61dc3e4aa8bcfe3
https://github.com/ehb54/ultrascan3/commit/93f3f88fd38b866aad319181f61dc3e4aa8bcfe3
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-06-12 (Thu, 12 Jun 2025)
Changed paths:
M admin/pam/pam_no_ad/README.md
Log Message:
-----------
pam - updated READEM
Commit: bb52f3f31f0438cd66c01a5d7e4eb903ce4b37d0
https://github.com/ehb54/ultrascan3/commit/bb52f3f31f0438cd66c01a5d7e4eb903ce4b37d0
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-06-12 (Thu, 12 Jun 2025)
Changed paths:
M admin/pam/pam_no_ad/README.md
Log Message:
-----------
Update README.md
Commit: 1eb1eb3811ccfad632482d58ed2a9ba6015609a4
https://github.com/ehb54/ultrascan3/commit/1eb1eb3811ccfad632482d58ed2a9ba6015609a4
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-06-13 (Fri, 13 Jun 2025)
Changed paths:
M admin/pam/pam_no_ad/files/sssd.conf
Log Message:
-----------
remove proxy_fast_switch
sssd.log reports [sssd] [sss_ini_call_validators] (0x0020): [rule/allowed_domain_options]: Attribute 'proxy_fast_switch' is not allowed in section 'domain/local'.
Commit: 1c7bcff1b439d260af022b29abcf3f0bb17c3983
https://github.com/ehb54/ultrascan3/commit/1c7bcff1b439d260af022b29abcf3f0bb17c3983
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-06-13 (Fri, 13 Jun 2025)
Changed paths:
M admin/pam/pam_no_ad/README.md
A admin/pam/pam_no_ad/pam_auth_pamtester.php
Log Message:
-----------
issue496 - pamtester testing
Commit: 7ce6ebcdb8cbd49311441bf7937aba4fec2bffd6
https://github.com/ehb54/ultrascan3/commit/7ce6ebcdb8cbd49311441bf7937aba4fec2bffd6
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-06-13 (Fri, 13 Jun 2025)
Changed paths:
M admin/pam/pam_no_ad/README.md
Log Message:
-----------
Update README.md
Commit: 6276beb67d5181eba36861791acef5e415723e89
https://github.com/ehb54/ultrascan3/commit/6276beb67d5181eba36861791acef5e415723e89
Author: aaron <aaron at aucsolutions.com>
Date: 2025-06-29 (Sun, 29 Jun 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
A CITATION.cff
M CMakeLists.txt
M LICENSE.txt
M admin/codeql/docker/docker/Dockerfile
M admin/codeql/docker/dockerdev/Dockerfile
M admin/release/buildpkg.pl
M admin/release/centos7/Dockerfile
M admin/release/redhat/Dockerfile
M admin/release/ubuntu/Dockerfile
A admin/release/ubuntu/mathops.h
M admin/release/ubuntu_qt6/Dockerfile
A admin/us_branch/README.md
A admin/us_branch/us_branch.php
A admin/us_branch/utility.php
M alpha/us.cpp
A doc/calc_model_coefficient_documentation.pdf
A doc/calc_timestate_documentation.pdf
R doc/manual/2dsa.body
A doc/manual/2dsa/2dsa.body
A doc/manual/2dsa/2dsa_advan.body
A doc/manual/2dsa/2dsa_analvv.body
A doc/manual/2dsa/2dsa_analys.body
R doc/manual/2dsa_advan.body
R doc/manual/2dsa_analvv.body
R doc/manual/2dsa_analys.body
M doc/manual/Makefile
M doc/manual/README
M doc/manual/advanced_config.body
M doc/manual/astfem_sim.body
M doc/manual/cfa_viewer.body
M doc/manual/colorgradient.body
M doc/manual/config.body
M doc/manual/config2.body
M doc/manual/convert.body
M doc/manual/data_loader.body
M doc/manual/ddist_combine.body
M doc/manual/dens_match.body
A doc/manual/experiment/experiment_cells.body
A doc/manual/experiment/experiment_general.body
A doc/manual/experiment/experiment_photomult.body
A doc/manual/experiment/experiment_rotor.body
A doc/manual/experiment/experiment_solutions.body
A doc/manual/experiment/experiment_speeds.body
A doc/manual/experiment/experiment_upload.body
R doc/manual/experiment_cells.body
R doc/manual/experiment_general.body
R doc/manual/experiment_photomult.body
R doc/manual/experiment_rotor.body
R doc/manual/experiment_solutions.body
R doc/manual/experiment_speeds.body
R doc/manual/experiment_upload.body
M doc/manual/export_legacy.body
R doc/manual/fe_match.body
A doc/manual/fe_match/fe_match.body
A doc/manual/fe_match/fe_match_adv.body
A doc/manual/fe_match/fe_match_controls.body
A doc/manual/fe_match/fe_match_lddat.body
A doc/manual/fe_match/fe_match_simulate.body
R doc/manual/fe_match_adv.body
R doc/manual/fe_match_controls.body
R doc/manual/fe_match_lddat.body
R doc/manual/fe_match_simulate.body
M doc/manual/fit_meniscus.body
M doc/manual/ga_initialize.body
A doc/manual/gmp/gmp.body
A doc/manual/gmp/gmp_audit_trail.body
A doc/manual/gmp/gmp_data_acquisition.body
A doc/manual/gmp/gmp_data_acquisition_experiment.body
A doc/manual/gmp/gmp_data_acquisition_gmp.body
A doc/manual/gmp/gmp_protocol_development.body
A doc/manual/gmp/gmp_report_generator.body
A doc/manual/gmp/gmp_signature.body
M doc/manual/grid_editor.body
A doc/manual/images/gmp/audit_trail/gmp_audit_trail_01.png
A doc/manual/images/gmp/audit_trail/gmp_audit_trail_02.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_01.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_02.png
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A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_06.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_07.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_08.png
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A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_12.png
A doc/manual/images/gmp/data_acquisition/experiment/gmp_data_acquisition_experiment_13.png
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M gui/us_license.cpp
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M gui/us_model_gui.h
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M programs/us_2dsa/us_2dsa.cpp
M programs/us_2dsa/us_analysis_control_2d.cpp
M programs/us_abde/us_abde_main.cpp
M programs/us_abde/us_norm_profile.cpp
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M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_astfem_sim/us_astfem_sim.h
M programs/us_astfem_sim/us_clipdata.h
M programs/us_audit_trail_gmp/us_audit_trail_gmp.cpp
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M programs/us_convert/us_experiment.cpp
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M utils/us_simparms.cpp
M utils/us_xpn_data.cpp
M utils/us_xpn_data.h
Log Message:
-----------
Merge remote-tracking branch 'origin/master' into aaron-dev-test-utils
# Conflicts:
# CMakeLists.txt
# test/utils/CMakeLists.txt
# test/utils/test_us_utils_main.cpp
# utils/CMakeLists.txt
Commit: a423656c7a4997ae177e5406c7b8f846d5cda459
https://github.com/ehb54/ultrascan3/commit/a423656c7a4997ae177e5406c7b8f846d5cda459
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-01 (Tue, 01 Jul 2025)
Changed paths:
M CMakeLists.txt
A admin/test/docker/Dockerfile
A test-docker.sh
M test/utils/CMakeLists.txt
M test/utils/mock/mock_us_db2.h
M test/utils/test_mock_us_db2.cpp
M test/utils/test_mock_us_db2.h
M test/utils/test_us_buffer.cpp
M test/utils/test_us_project.cpp
M test/utils/test_us_project.h
R test/utils/test_us_project_gtest.cpp
R test/utils/test_us_project_gtest.h
R test/utils/test_us_simparams.cpp
R test/utils/test_us_simparams.h
M test/utils/test_us_simparms.cpp
M test/utils/test_us_utils_main.cpp
M utils/CMakeLists.txt
A utils/ius_db2.h
M utils/us_db2.cpp
M utils/us_db2.h
M utils/us_project.cpp
M utils/us_project.h
Log Message:
-----------
dependency injection, docker, and remove duplicates
Commit: b10a7ddbde27cb31ff6ce03fac85921856c2c90f
https://github.com/ehb54/ultrascan3/commit/b10a7ddbde27cb31ff6ce03fac85921856c2c90f
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-03 (Thu, 03 Jul 2025)
Changed paths:
M CMakeLists.txt
M test-docker.sh
A test/common/qt_test_base.cpp
A test/common/qt_test_base.h
M test/utils/CMakeLists.txt
M test/utils/test_us_ana_profile.cpp
M test/utils/test_us_ana_profile.h
M test/utils/test_us_analyte.cpp
M test/utils/test_us_analyte.h
M test/utils/test_us_astfem_math.cpp
M test/utils/test_us_astfem_math.h
M test/utils/test_us_buffer.cpp
M test/utils/test_us_crc.cpp
M test/utils/test_us_crc.h
M test/utils/test_us_crypto.cpp
M test/utils/test_us_crypto.h
M test/utils/test_us_dataIO.cpp
M test/utils/test_us_dataIO.h
M test/utils/test_us_datafiles.cpp
M test/utils/test_us_datafiles.h
M test/utils/test_us_db2.cpp
M test/utils/test_us_db2.h
M test/utils/test_us_math2.cpp
M test/utils/test_us_math2.h
M test/utils/test_us_matrix.cpp
M test/utils/test_us_matrix.h
M test/utils/test_us_memory.cpp
M test/utils/test_us_memory.h
M test/utils/test_us_settings.cpp
M test/utils/test_us_settings.h
M test/utils/test_us_simparms.cpp
M test/utils/test_us_simparms.h
M test/utils/test_us_utils_main.cpp
M utils/us_dataIO.h
Log Message:
-----------
convert qtests to google tests
Commit: 54099cb2ff6ed13d069418492a1d7c6430277fb4
https://github.com/ehb54/ultrascan3/commit/54099cb2ff6ed13d069418492a1d7c6430277fb4
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-03 (Thu, 03 Jul 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
remove specific test logic
Commit: 5e9fb44fd3876b7e28a86b61c5cc8ceed76a903a
https://github.com/ehb54/ultrascan3/commit/5e9fb44fd3876b7e28a86b61c5cc8ceed76a903a
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-03 (Thu, 03 Jul 2025)
Changed paths:
M test/utils/test_us_crypto.cpp
Log Message:
-----------
test failing test
Commit: 29b485c94b6bfd0e1f7be5ca07da8449cefe8081
https://github.com/ehb54/ultrascan3/commit/29b485c94b6bfd0e1f7be5ca07da8449cefe8081
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-03 (Thu, 03 Jul 2025)
Changed paths:
M test/utils/test_us_crypto.cpp
Log Message:
-----------
disabled failing test
Commit: 9f15926c85f745d67b489772eb640400a916ad92
https://github.com/ehb54/ultrascan3/commit/9f15926c85f745d67b489772eb640400a916ad92
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-05 (Sat, 05 Jul 2025)
Changed paths:
M CMakeLists.txt
M test-docker.sh
A test/README.md
Log Message:
-----------
fixed comment, added readme
Commit: 3212f77418d1cedfe0dbc2db7f9d1a47a672d8f4
https://github.com/ehb54/ultrascan3/commit/3212f77418d1cedfe0dbc2db7f9d1a47a672d8f4
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-06 (Sun, 06 Jul 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
code analysis
Commit: a9025670cc855940cf159141a10a5e0648312794
https://github.com/ehb54/ultrascan3/commit/a9025670cc855940cf159141a10a5e0648312794
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-06 (Sun, 06 Jul 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
Log Message:
-----------
code analysis removed sudo
Commit: bbdf69b0fef6c0be255ef3bdecfba8597797c668
https://github.com/ehb54/ultrascan3/commit/bbdf69b0fef6c0be255ef3bdecfba8597797c668
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-06 (Sun, 06 Jul 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
A .github/workflows/static-analysis.yml
Log Message:
-----------
moved static analysis to separate file
Commit: d208f8e88de47207cc309f9b9e25483681973e03
https://github.com/ehb54/ultrascan3/commit/d208f8e88de47207cc309f9b9e25483681973e03
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-06 (Sun, 06 Jul 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
fix iwyu
Commit: 3df3a60b840e7b78e9c6cbf9fe581f08a77f3d6e
https://github.com/ehb54/ultrascan3/commit/3df3a60b840e7b78e9c6cbf9fe581f08a77f3d6e
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-09 (Wed, 09 Jul 2025)
Changed paths:
R doc/manual/README
A doc/manual/README.md
Log Message:
-----------
update manual creation instructions
Commit: cbf13444f00522dfc1c7ba1dc91c9ba64c39e782
https://github.com/ehb54/ultrascan3/commit/cbf13444f00522dfc1c7ba1dc91c9ba64c39e782
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-09 (Wed, 09 Jul 2025)
Changed paths:
M test/README.md
Log Message:
-----------
update manual creation instructions
Commit: a65be797990b6aa12a17b160b052482c930fb9ce
https://github.com/ehb54/ultrascan3/commit/a65be797990b6aa12a17b160b052482c930fb9ce
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-09 (Wed, 09 Jul 2025)
Changed paths:
M doc/manual/README.md
Log Message:
-----------
update manual creation instructions
Commit: ea0b94a1f952fafffb14e048ef59ac09de4dae31
https://github.com/ehb54/ultrascan3/commit/ea0b94a1f952fafffb14e048ef59ac09de4dae31
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-07-09 (Wed, 09 Jul 2025)
Changed paths:
M gui/us_report_gui.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_anapro_utils.cpp
Log Message:
-----------
8. AProfile: Report -- a sublte bug fixed for correctly inheriting exp. duration timefrom the main protocol into AProfile's->reports when setting protocol from scratch for the first time; also make exp. dur. fileds read-only ...
Commit: 5ea9fa1c7dd4d0508386d70cc3f96d2f33275adf
https://github.com/ehb54/ultrascan3/commit/5ea9fa1c7dd4d0508386d70cc3f96d2f33275adf
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-07-10 (Thu, 10 Jul 2025)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_experiment/us_proto_ranges.cpp
Log Message:
-----------
GMP | R&D -- replace all QwtCounters with QSpinBoxes, to better control and validate inputs ...
Commit: 0ce7f8bbe5702044fddc573c6c7ea2002b72510d
https://github.com/ehb54/ultrascan3/commit/0ce7f8bbe5702044fddc573c6c7ea2002b72510d
Author: aaron <aaron at aucsolutions.com>
Date: 2025-07-13 (Sun, 13 Jul 2025)
Changed paths:
M CMakeLists.txt
M admin/test/docker/Dockerfile
A gui/CMakeLists.txt
M gui/us_abstractrotor_gui.cpp
M gui/us_buffer_gui.cpp
M gui/us_data_loader.cpp
M gui/us_failed_gmp_run_gui.cpp
M gui/us_load_auc.cpp
M gui/us_loadable_noise.cpp
M gui/us_model_gui.cpp
M gui/us_model_gui.h
M gui/us_model_loader.cpp
M gui/us_model_loader.h
M gui/us_noise_loader.h
M gui/us_project_gui.cpp
M gui/us_rotor_gui.cpp
M gui/us_solution_gui.cpp
M programs/us/us.cpp
M programs/us_2dsa/us_2dsa.cpp
M programs/us_astfem_sim/us_clipdata.cpp
M programs/us_config/us_database.cpp
M programs/us_config/us_xpnhost_db.cpp
M programs/us_config/us_xpnhost_db.h
M programs/us_convert/us_get_run.cpp
M programs/us_edit/us_edit.h
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_ga_init/us_solutedata.cpp
M programs/us_integral/us_integral.cpp
M programs/us_manage_data/us_manage_data.cpp
M programs/us_mwlr_viewer/us_mwl_run.cpp
M programs/us_pcsa/us_adv_analysis_pc.cpp
M programs/us_pcsa/us_analysis_control_pc.cpp
M programs/us_pcsa/us_mrecs_loader.cpp
M programs/us_pcsa/us_mrecs_loader.h
M programs/us_pcsa/us_pcsa.cpp
M programs/us_pcsa/us_pcsa_process.cpp
M programs/us_pcsa/us_rpscan.cpp
M programs/us_ramp/us_experiment_gui_ra.cpp
M programs/us_ramp/us_experiment_ra.cpp
M programs/us_ramp/us_experiment_ra.h
M programs/us_ramp/us_get_dbrun_ra.cpp
M programs/us_ramp/us_ramp_gui.cpp
M programs/us_reporter/us_reporter.cpp
M programs/us_xpn_viewer/us_xpn_run_auc.cpp
M programs/us_xpn_viewer/us_xpn_run_raw.cpp
M test-docker.sh
M test/common/qt_test_base.h
M test/utils/CMakeLists.txt
M test/utils/mock/mock_us_db2.h
M test/utils/test_mock_us_db2.cpp
R test/utils/test_mock_us_db2.h
M test/utils/test_us_ana_profile.cpp
R test/utils/test_us_ana_profile.h
M test/utils/test_us_analyte.cpp
R test/utils/test_us_analyte.h
M test/utils/test_us_astfem_math.cpp
R test/utils/test_us_astfem_math.h
M test/utils/test_us_astfem_rsa.cpp
R test/utils/test_us_astfem_rsa.h
M test/utils/test_us_buffer.cpp
M test/utils/test_us_crc.cpp
R test/utils/test_us_crc.h
M test/utils/test_us_crypto.cpp
R test/utils/test_us_crypto.h
M test/utils/test_us_dataIO.cpp
R test/utils/test_us_dataIO.h
M test/utils/test_us_datafiles.cpp
R test/utils/test_us_datafiles.h
M test/utils/test_us_db2.cpp
R test/utils/test_us_db2.h
M test/utils/test_us_math2.cpp
R test/utils/test_us_math2.h
M test/utils/test_us_matrix.cpp
R test/utils/test_us_matrix.h
M test/utils/test_us_memory.cpp
R test/utils/test_us_memory.h
M test/utils/test_us_model.cpp
R test/utils/test_us_model.h
M test/utils/test_us_project.cpp
R test/utils/test_us_project.h
M test/utils/test_us_settings.cpp
R test/utils/test_us_settings.h
M test/utils/test_us_simparms.cpp
R test/utils/test_us_simparms.h
M test/utils/test_us_stiffbase.cpp
R test/utils/test_us_stiffbase.h
M test/utils/test_us_time_state.cpp
R test/utils/test_us_time_state.h
A test/utils/test_us_timer.cpp
M test/utils/test_us_util.cpp
R test/utils/test_us_util.h
M test/utils/test_us_utils_main.cpp
A test/utils/test_us_vector.cpp
M us_somo/develop/include/us_zeno_cxx.h
M us_somo/develop/include/us_zeno_cxx_nf.h
M utils/CMakeLists.txt
M utils/us_analyte.cpp
M utils/us_analyte.h
M utils/us_astfem_rsa.cpp
M utils/us_buffer.cpp
M utils/us_buffer.h
M utils/us_cfa_data.cpp
M utils/us_dataIO.cpp
M utils/us_eprofile.cpp
M utils/us_eprofile.h
M utils/us_hardware.cpp
M utils/us_hardware.h
M utils/us_lamm_astfvm.cpp
M utils/us_model.cpp
M utils/us_model.h
M utils/us_noise.cpp
M utils/us_noise.h
M utils/us_report.cpp
M utils/us_report.h
M utils/us_rotor.cpp
M utils/us_rotor.h
M utils/us_simparms.cpp
M utils/us_simparms.h
M utils/us_solution.cpp
M utils/us_solution.h
M utils/us_solution_vals.cpp
M utils/us_solution_vals.h
M utils/us_solve_sim.cpp
M utils/us_solve_sim.h
M utils/us_time_state.cpp
M utils/us_time_state.h
M utils/us_xpn_data.cpp
Log Message:
-----------
ius_db2 build
Commit: f8117c1eed92f953f483005cb49d40818b971cc9
https://github.com/ehb54/ultrascan3/commit/f8117c1eed92f953f483005cb49d40818b971cc9
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-07-28 (Mon, 28 Jul 2025)
Changed paths:
M gui/us_widgets.cpp
M gui/us_widgets_dialog.cpp
Log Message:
-----------
GMP | R&D -- change ranges for dd-hh-mm-ss QSpinBoxes in 1. EXP.: 3. Speeds...
Commit: b04c6a0e3ca869fe82ecb0c371d7429d546a479c
https://github.com/ehb54/ultrascan3/commit/b04c6a0e3ca869fe82ecb0c371d7429d546a479c
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-07-29 (Tue, 29 Jul 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
GMP | R&D -- MWL exp.: remove lambda-start/end buttons as spurious user interactions.....
Commit: 95345c95c9d0a94b098e06a51f808abb44eca73c
https://github.com/ehb54/ultrascan3/commit/95345c95c9d0a94b098e06a51f808abb44eca73c
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-08-01 (Fri, 01 Aug 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
add widgets and methods to switch between the constant and varying z-values
Commit: f1bc04efe3561e38ed1e9efb0ea052d095e0bdc9
https://github.com/ehb54/ultrascan3/commit/f1bc04efe3561e38ed1e9efb0ea052d095e0bdc9
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-08-05 (Tue, 05 Aug 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: a new widget US_Grid_ZFunction added to set a function for varying z-values
Commit: 9fefa61cdfe86961bddcc680ce15393cc20a58a4
https://github.com/ehb54/ultrascan3/commit/9fefa61cdfe86961bddcc680ce15393cc20a58a4
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-08-07 (Thu, 07 Aug 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor.cpp: large update in GUI in the z-value function setter
Commit: 16bf97037e8256a037e5ebe4007eafefbb000e2c
https://github.com/ehb54/ultrascan3/commit/16bf97037e8256a037e5ebe4007eafefbb000e2c
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-08-07 (Thu, 07 Aug 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: fixed the issue with labeling and min/max of the dependent variables
Commit: 24be34a5c69ff149a560999f823643c7b0792349
https://github.com/ehb54/ultrascan3/commit/24be34a5c69ff149a560999f823643c7b0792349
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-08-07 (Thu, 07 Aug 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: finishe curve fitting and data plotting
Commit: 9400854e36aec49322a546bb77d2b71df01a6ab3
https://github.com/ehb54/ultrascan3/commit/9400854e36aec49322a546bb77d2b71df01a6ab3
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-08-07 (Thu, 07 Aug 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
s_grid_editor: correct plot min/max. rename min and max labels of the z-axis
Commit: 43b41962e22e4af8e1616b048ce38b8c3714aafa
https://github.com/ehb54/ultrascan3/commit/43b41962e22e4af8e1616b048ce38b8c3714aafa
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-08-08 (Fri, 08 Aug 2025)
Changed paths:
M gui/us_sim_params_gui.cpp
M gui/us_sim_params_gui.h
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_astfem_sim/us_astfem_sim.h
M utils/us_simparms.cpp
M utils/us_simparms.h
Log Message:
-----------
Merge pull request #250 from ehb54/master
Bring the branch into up-to-date state with the master
Commit: d4427c298c0021926269eced3660ad13ddb57da1
https://github.com/ehb54/ultrascan3/commit/d4427c298c0021926269eced3660ad13ddb57da1
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-08-08 (Fri, 08 Aug 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M utils/us_model.cpp
M utils/us_model.h
Log Message:
-----------
completed US_Grid_ZFunction and add functions to parse z expression
Commit: b28b060a27873c104daa81b246b10d28c06719a7
https://github.com/ehb54/ultrascan3/commit/b28b060a27873c104daa81b246b10d28c06719a7
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-08-11 (Mon, 11 Aug 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
renamed some of slots. set z-value function is merged to the main program.
Commit: 9502025efbe734d0d076441a4ce57152c1cb5be1
https://github.com/ehb54/ultrascan3/commit/9502025efbe734d0d076441a4ce57152c1cb5be1
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-08-12 (Tue, 12 Aug 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
update some variable name and pick a new sorting approach
Commit: 82dba023d20a191fd66a944d637a5c2ad2b16a87
https://github.com/ehb54/ultrascan3/commit/82dba023d20a191fd66a944d637a5c2ad2b16a87
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-08-12 (Tue, 12 Aug 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
completed import/export the model file
Commit: 6c42a3106a9fc648137eb52b102fd9906fd2e1dc
https://github.com/ehb54/ultrascan3/commit/6c42a3106a9fc648137eb52b102fd9906fd2e1dc
Author: SophiaBird95 <135044923+SophiaBird95 at users.noreply.github.com>
Date: 2025-08-12 (Tue, 12 Aug 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
Merge pull request #243 from ehb54/alexey-dev-issue529
GMP | R&D -- MWL exp.: remove lambda-start/end buttons as spurious user intractions
Commit: a467c94674c461b9cdf1bf4861ff3b0d826153c4
https://github.com/ehb54/ultrascan3/commit/a467c94674c461b9cdf1bf4861ff3b0d826153c4
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-08-13 (Wed, 13 Aug 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
parse parameters that already set up in the set-function widget
Commit: f11e93fa0fdafa964feeb508673735618375692c
https://github.com/ehb54/ultrascan3/commit/f11e93fa0fdafa964feeb508673735618375692c
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-08-13 (Wed, 13 Aug 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: put comments in the header file.
Commit: 1d528556d364d7b6609e4bd1bdd42e511a7de5a7
https://github.com/ehb54/ultrascan3/commit/1d528556d364d7b6609e4bd1bdd42e511a7de5a7
Author: samo38 <saeed.mortezazadeh25 at gmail.com>
Date: 2025-08-13 (Wed, 13 Aug 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
Merge remote-tracking branch 'upstream/master' into issue_532
Commit: d3d86f69dd9b0447a7a21aa29b0b9fccab83f8fa
https://github.com/ehb54/ultrascan3/commit/d3d86f69dd9b0447a7a21aa29b0b9fccab83f8fa
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-08-13 (Wed, 13 Aug 2025)
Changed paths:
M us_somo/somo/doc/manual/somo/somo-Zeno_optionsNew.png
M us_somo/somo/doc/manual/somo/somo-main0new.png
M us_somo/somo/doc/manual/somo/somo-main4.png
M us_somo/somo/doc/manual/somo/somo.html
M us_somo/somo/doc/manual/somo/somo_cluster_config.html
M us_somo/somo/doc/manual/somo/somo_hydro_zeno.html
Log Message:
-----------
somo doc updates
Commit: a2305a2a45f9bc2b4172267de5ac724cd8ffc3d7
https://github.com/ehb54/ultrascan3/commit/a2305a2a45f9bc2b4172267de5ac724cd8ffc3d7
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-08-13 (Wed, 13 Aug 2025)
Changed paths:
A us_somo/develop/include/us_band_broaden.h
M us_somo/develop/include/us_hydrodyn.h
M us_somo/develop/include/us_hydrodyn_cluster_best.h
M us_somo/develop/include/us_hydrodyn_dad.h
M us_somo/develop/include/us_hydrodyn_hydro.h
M us_somo/develop/include/us_hydrodyn_hydro_zeno.h
M us_somo/develop/include/us_hydrodyn_mals.h
M us_somo/develop/include/us_hydrodyn_saxs.h
M us_somo/develop/include/us_hydrodyn_saxs_buffer.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc_ciq.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc_fit.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc_movie.h
M us_somo/develop/include/us_json.h
M us_somo/develop/include/us_matrix.h
M us_somo/develop/include/us_multi_column.h
M us_somo/develop/include/us_pfortran.h
A us_somo/develop/include/us_revision.h
M us_somo/develop/include/us_saxs_util.h
M us_somo/develop/include/us_tar.h
M us_somo/develop/include/us_tnt_jama.h
M us_somo/develop/include/us_unicode.h
M us_somo/develop/libus_somo.pro
M us_somo/develop/src/qwt/scrollzoomer.cpp
M us_somo/develop/src/us3i_color.cpp
M us_somo/develop/src/us3i_util.cpp
A us_somo/develop/src/us_band_broaden.cpp
M us_somo/develop/src/us_color.cpp
M us_somo/develop/src/us_config.cpp
M us_somo/develop/src/us_config_gui.cpp
M us_somo/develop/src/us_dirhist.cpp
M us_somo/develop/src/us_ffd.cpp
M us_somo/develop/src/us_font.cpp
M us_somo/develop/src/us_fractal_dimension.cpp
M us_somo/develop/src/us_help.cpp
M us_somo/develop/src/us_hydrodyn.cpp
M us_somo/develop/src/us_hydrodyn_addatom.cpp
M us_somo/develop/src/us_hydrodyn_addhybrid.cpp
M us_somo/develop/src/us_hydrodyn_addresidue.cpp
M us_somo/develop/src/us_hydrodyn_addsaxs.cpp
M us_somo/develop/src/us_hydrodyn_batch.cpp
M us_somo/develop/src/us_hydrodyn_bd_core.cpp
M us_somo/develop/src/us_hydrodyn_bd_load_results_opts.cpp
M us_somo/develop/src/us_hydrodyn_bd_options.cpp
M us_somo/develop/src/us_hydrodyn_beads.cpp
M us_somo/develop/src/us_hydrodyn_beads_load.cpp
M us_somo/develop/src/us_hydrodyn_cluster.cpp
M us_somo/develop/src/us_hydrodyn_cluster_advanced.cpp
M us_somo/develop/src/us_hydrodyn_cluster_best.cpp
M us_somo/develop/src/us_hydrodyn_cluster_results.cpp
M us_somo/develop/src/us_hydrodyn_cluster_status.cpp
M us_somo/develop/src/us_hydrodyn_cluster_submit.cpp
M us_somo/develop/src/us_hydrodyn_core.cpp
M us_somo/develop/src/us_hydrodyn_dad.cpp
M us_somo/develop/src/us_hydrodyn_dad_gg.cpp
M us_somo/develop/src/us_hydrodyn_dad_gui.cpp
M us_somo/develop/src/us_hydrodyn_dad_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_bb.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_guinier.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_powerfit.cpp
M us_somo/develop/src/us_hydrodyn_dad_movie.cpp
M us_somo/develop/src/us_hydrodyn_dad_options.cpp
M us_somo/develop/src/us_hydrodyn_dad_parameters.cpp
M us_somo/develop/src/us_hydrodyn_dad_plots.cpp
M us_somo/develop/src/us_hydrodyn_dad_svd.cpp
M us_somo/develop/src/us_hydrodyn_dad_util.cpp
M us_somo/develop/src/us_hydrodyn_dammin_opts.cpp
M us_somo/develop/src/us_hydrodyn_fractal_dimension.cpp
M us_somo/develop/src/us_hydrodyn_grid_atob.cpp
M us_somo/develop/src/us_hydrodyn_grpy.cpp
M us_somo/develop/src/us_hydrodyn_hydrate.cpp
M us_somo/develop/src/us_hydrodyn_hydrate_align.cpp
M us_somo/develop/src/us_hydrodyn_hydro.cpp
M us_somo/develop/src/us_hydrodyn_hydro_zeno.cpp
M us_somo/develop/src/us_hydrodyn_info.cpp
M us_somo/develop/src/us_hydrodyn_load.cpp
M us_somo/develop/src/us_hydrodyn_mals.cpp
M us_somo/develop/src/us_hydrodyn_mals_gg.cpp
M us_somo/develop/src/us_hydrodyn_mals_gui.cpp
M us_somo/develop/src/us_hydrodyn_mals_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_mals_modes_bb.cpp
M us_somo/develop/src/us_hydrodyn_mals_modes_guinier.cpp
M us_somo/develop/src/us_hydrodyn_mals_movie.cpp
M us_somo/develop/src/us_hydrodyn_mals_options.cpp
M us_somo/develop/src/us_hydrodyn_mals_plots.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_gg.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_gui.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_bb.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_guinier.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_scale.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_movie.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_options.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_plots.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_svd.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_util.cpp
M us_somo/develop/src/us_hydrodyn_mals_svd.cpp
M us_somo/develop/src/us_hydrodyn_mals_util.cpp
M us_somo/develop/src/us_hydrodyn_misc.cpp
M us_somo/develop/src/us_hydrodyn_other.cpp
M us_somo/develop/src/us_hydrodyn_pat.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool_merge.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool_util.cpp
M us_somo/develop/src/us_hydrodyn_results.cpp
M us_somo/develop/src/us_hydrodyn_save.cpp
M us_somo/develop/src/us_hydrodyn_saxs.cpp
M us_somo/develop/src/us_hydrodyn_saxs_1d.cpp
M us_somo/develop/src/us_hydrodyn_saxs_2d.cpp
M us_somo/develop/src/us_hydrodyn_saxs_buffer.cpp
A us_somo/develop/src/us_hydrodyn_saxs_buffer_fit.cpp
A us_somo/develop/src/us_hydrodyn_saxs_buffer_gui.cpp
M us_somo/develop/src/us_hydrodyn_saxs_cormap.cpp
M us_somo/develop/src/us_hydrodyn_saxs_guinier.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_ciq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_fit.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_gg.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_gui.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_bb.cpp
A us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_broaden.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_wheel.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_movie.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_options.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_plots.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_svd.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_util.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_bead_model.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_residuals.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_sh.cpp
M us_somo/develop/src/us_hydrodyn_saxs_loads.cpp
M us_somo/develop/src/us_hydrodyn_saxs_mw.cpp
M us_somo/develop/src/us_hydrodyn_saxs_plots.cpp
M us_somo/develop/src/us_hydrodyn_saxs_pr.cpp
M us_somo/develop/src/us_hydrodyn_saxs_screen.cpp
M us_somo/develop/src/us_hydrodyn_script.cpp
M us_somo/develop/src/us_hydrodyn_settings.cpp
M us_somo/develop/src/us_hydrodyn_supc.cpp
M us_somo/develop/src/us_hydrodyn_util.cpp
M us_somo/develop/src/us_hydrodyn_write.cpp
M us_somo/develop/src/us_hydrodyn_zeno.cpp
M us_somo/develop/src/us_imgviewer.cpp
M us_somo/develop/src/us_json.cpp
M us_somo/develop/src/us_matrix.cpp
M us_somo/develop/src/us_plot_util.cpp
M us_somo/develop/src/us_plot_zoom.cpp
M us_somo/develop/src/us_pm_fitness.cpp
M us_somo/develop/src/us_register.cpp
M us_somo/develop/src/us_saxs_util.cpp
M us_somo/develop/src/us_saxs_util_best.cpp
M us_somo/develop/src/us_saxs_util_guinier.cpp
M us_somo/develop/src/us_saxs_util_hydrate.cpp
M us_somo/develop/src/us_saxs_util_hydrate_align.cpp
M us_somo/develop/src/us_saxs_util_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_grid_atob_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_pat_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_supc_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_zeno_hydro.cpp
M us_somo/develop/src/us_saxs_util_iqq.cpp
M us_somo/develop/src/us_saxs_util_iqq_1d.cpp
M us_somo/develop/src/us_saxs_util_iqq_bead_model.cpp
M us_somo/develop/src/us_saxs_util_iqq_pdb.cpp
M us_somo/develop/src/us_saxs_util_loads.cpp
M us_somo/develop/src/us_saxs_util_pat.cpp
M us_somo/develop/src/us_saxs_util_pm.cpp
M us_somo/develop/src/us_saxs_util_static.cpp
M us_somo/develop/src/us_tar.cpp
M us_somo/develop/src/us_util.cpp
M us_somo/develop/src/us_zeno_cxx.cpp
Log Message:
-----------
somo updates
Commit: 535c6595f0301d0e1fd51fde59f6be1526723374
https://github.com/ehb54/ultrascan3/commit/535c6595f0301d0e1fd51fde59f6be1526723374
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-08-13 (Wed, 13 Aug 2025)
Changed paths:
M us_somo/develop/src/us_hydrodyn_hydro_zeno.cpp
Log Message:
-----------
widen zeno hydro window
Commit: 067234bbefc26d45806d7b7158a217a02a231acc
https://github.com/ehb54/ultrascan3/commit/067234bbefc26d45806d7b7158a217a02a231acc
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-08-14 (Thu, 14 Aug 2025)
Changed paths:
M us_somo/develop/include/us_hydrodyn_saxs_hplc.h
Log Message:
-----------
review updates
Commit: 010cbe3ff2174263913aa0739e19022fba47b4e5
https://github.com/ehb54/ultrascan3/commit/010cbe3ff2174263913aa0739e19022fba47b4e5
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-08-14 (Thu, 14 Aug 2025)
Changed paths:
M us_somo/develop/src/us_config.cpp
Log Message:
-----------
review updates
Commit: 7c8812172d1813b891f93df82d27f1cb5a9e5540
https://github.com/ehb54/ultrascan3/commit/7c8812172d1813b891f93df82d27f1cb5a9e5540
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-08-14 (Thu, 14 Aug 2025)
Changed paths:
M us_somo/develop/src/us_config.cpp
Log Message:
-----------
review updates
Commit: f767720f6aacfc70d69615a82f364cb9e31e4d06
https://github.com/ehb54/ultrascan3/commit/f767720f6aacfc70d69615a82f364cb9e31e4d06
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-08-14 (Thu, 14 Aug 2025)
Changed paths:
M us_somo/develop/src/us_config.cpp
Log Message:
-----------
review updates
Commit: bdd0264a5a222af75694013a39418b3df8caaf62
https://github.com/ehb54/ultrascan3/commit/bdd0264a5a222af75694013a39418b3df8caaf62
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-08-14 (Thu, 14 Aug 2025)
Changed paths:
M us_somo/develop/src/us_hydrodyn_addresidue.cpp
Log Message:
-----------
review updates
Commit: 46e6d45623e94e8ee5f4caee294f0d4f725cf040
https://github.com/ehb54/ultrascan3/commit/46e6d45623e94e8ee5f4caee294f0d4f725cf040
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-08-14 (Thu, 14 Aug 2025)
Changed paths:
M us_somo/develop/src/us_hydrodyn_batch.cpp
M us_somo/develop/src/us_hydrodyn_cluster.cpp
Log Message:
-----------
review updates
Commit: f7f4c399680fe23d645fa3995b1d2666f48a0d05
https://github.com/ehb54/ultrascan3/commit/f7f4c399680fe23d645fa3995b1d2666f48a0d05
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-08-14 (Thu, 14 Aug 2025)
Changed paths:
M us_somo/develop/src/us_hydrodyn_dad.cpp
M us_somo/develop/src/us_hydrodyn_mals.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc.cpp
M us_somo/develop/src/us_util.cpp
Log Message:
-----------
review updates
Commit: 15b11afbf5ab46b92562c790b64ab027ad3a4a81
https://github.com/ehb54/ultrascan3/commit/15b11afbf5ab46b92562c790b64ab027ad3a4a81
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-08-14 (Thu, 14 Aug 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M utils/us_model.cpp
M utils/us_model.h
Log Message:
-----------
Merge pull request #251 from samo38/issue_532
Ticket 532: Custom Grid Enhancement
Commit: c488e35264600c64881f4e2b9a64eda47383e724
https://github.com/ehb54/ultrascan3/commit/c488e35264600c64881f4e2b9a64eda47383e724
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-08-15 (Fri, 15 Aug 2025)
Changed paths:
A us_somo/develop/include/us_band_broaden.h
M us_somo/develop/include/us_hydrodyn.h
M us_somo/develop/include/us_hydrodyn_cluster_best.h
M us_somo/develop/include/us_hydrodyn_dad.h
M us_somo/develop/include/us_hydrodyn_hydro.h
M us_somo/develop/include/us_hydrodyn_hydro_zeno.h
M us_somo/develop/include/us_hydrodyn_mals.h
M us_somo/develop/include/us_hydrodyn_saxs.h
M us_somo/develop/include/us_hydrodyn_saxs_buffer.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc_ciq.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc_fit.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc_movie.h
M us_somo/develop/include/us_json.h
M us_somo/develop/include/us_matrix.h
M us_somo/develop/include/us_multi_column.h
M us_somo/develop/include/us_pfortran.h
A us_somo/develop/include/us_revision.h
M us_somo/develop/include/us_saxs_util.h
M us_somo/develop/include/us_tar.h
M us_somo/develop/include/us_tnt_jama.h
M us_somo/develop/include/us_unicode.h
M us_somo/develop/libus_somo.pro
M us_somo/develop/src/qwt/scrollzoomer.cpp
M us_somo/develop/src/us3i_color.cpp
M us_somo/develop/src/us3i_util.cpp
A us_somo/develop/src/us_band_broaden.cpp
M us_somo/develop/src/us_color.cpp
M us_somo/develop/src/us_config_gui.cpp
M us_somo/develop/src/us_dirhist.cpp
M us_somo/develop/src/us_ffd.cpp
M us_somo/develop/src/us_font.cpp
M us_somo/develop/src/us_fractal_dimension.cpp
M us_somo/develop/src/us_help.cpp
M us_somo/develop/src/us_hydrodyn.cpp
M us_somo/develop/src/us_hydrodyn_addatom.cpp
M us_somo/develop/src/us_hydrodyn_addhybrid.cpp
M us_somo/develop/src/us_hydrodyn_addresidue.cpp
M us_somo/develop/src/us_hydrodyn_addsaxs.cpp
M us_somo/develop/src/us_hydrodyn_batch.cpp
M us_somo/develop/src/us_hydrodyn_bd_core.cpp
M us_somo/develop/src/us_hydrodyn_bd_load_results_opts.cpp
M us_somo/develop/src/us_hydrodyn_bd_options.cpp
M us_somo/develop/src/us_hydrodyn_beads.cpp
M us_somo/develop/src/us_hydrodyn_beads_load.cpp
M us_somo/develop/src/us_hydrodyn_cluster.cpp
M us_somo/develop/src/us_hydrodyn_cluster_advanced.cpp
M us_somo/develop/src/us_hydrodyn_cluster_best.cpp
M us_somo/develop/src/us_hydrodyn_cluster_results.cpp
M us_somo/develop/src/us_hydrodyn_cluster_status.cpp
M us_somo/develop/src/us_hydrodyn_cluster_submit.cpp
M us_somo/develop/src/us_hydrodyn_core.cpp
M us_somo/develop/src/us_hydrodyn_dad.cpp
M us_somo/develop/src/us_hydrodyn_dad_gg.cpp
M us_somo/develop/src/us_hydrodyn_dad_gui.cpp
M us_somo/develop/src/us_hydrodyn_dad_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_bb.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_guinier.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_powerfit.cpp
M us_somo/develop/src/us_hydrodyn_dad_movie.cpp
M us_somo/develop/src/us_hydrodyn_dad_options.cpp
M us_somo/develop/src/us_hydrodyn_dad_parameters.cpp
M us_somo/develop/src/us_hydrodyn_dad_plots.cpp
M us_somo/develop/src/us_hydrodyn_dad_svd.cpp
M us_somo/develop/src/us_hydrodyn_dad_util.cpp
M us_somo/develop/src/us_hydrodyn_dammin_opts.cpp
M us_somo/develop/src/us_hydrodyn_fractal_dimension.cpp
M us_somo/develop/src/us_hydrodyn_grid_atob.cpp
M us_somo/develop/src/us_hydrodyn_grpy.cpp
M us_somo/develop/src/us_hydrodyn_hydrate.cpp
M us_somo/develop/src/us_hydrodyn_hydrate_align.cpp
M us_somo/develop/src/us_hydrodyn_hydro.cpp
M us_somo/develop/src/us_hydrodyn_hydro_zeno.cpp
M us_somo/develop/src/us_hydrodyn_info.cpp
M us_somo/develop/src/us_hydrodyn_load.cpp
M us_somo/develop/src/us_hydrodyn_mals.cpp
M us_somo/develop/src/us_hydrodyn_mals_gg.cpp
M us_somo/develop/src/us_hydrodyn_mals_gui.cpp
M us_somo/develop/src/us_hydrodyn_mals_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_mals_modes_bb.cpp
M us_somo/develop/src/us_hydrodyn_mals_modes_guinier.cpp
M us_somo/develop/src/us_hydrodyn_mals_movie.cpp
M us_somo/develop/src/us_hydrodyn_mals_options.cpp
M us_somo/develop/src/us_hydrodyn_mals_plots.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_gg.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_gui.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_bb.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_guinier.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_scale.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_movie.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_options.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_plots.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_svd.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_util.cpp
M us_somo/develop/src/us_hydrodyn_mals_svd.cpp
M us_somo/develop/src/us_hydrodyn_mals_util.cpp
M us_somo/develop/src/us_hydrodyn_misc.cpp
M us_somo/develop/src/us_hydrodyn_other.cpp
M us_somo/develop/src/us_hydrodyn_pat.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool_merge.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool_util.cpp
M us_somo/develop/src/us_hydrodyn_results.cpp
M us_somo/develop/src/us_hydrodyn_save.cpp
M us_somo/develop/src/us_hydrodyn_saxs.cpp
M us_somo/develop/src/us_hydrodyn_saxs_1d.cpp
M us_somo/develop/src/us_hydrodyn_saxs_2d.cpp
M us_somo/develop/src/us_hydrodyn_saxs_buffer.cpp
A us_somo/develop/src/us_hydrodyn_saxs_buffer_fit.cpp
A us_somo/develop/src/us_hydrodyn_saxs_buffer_gui.cpp
M us_somo/develop/src/us_hydrodyn_saxs_cormap.cpp
M us_somo/develop/src/us_hydrodyn_saxs_guinier.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_ciq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_fit.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_gg.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_gui.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_bb.cpp
A us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_broaden.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_wheel.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_movie.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_options.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_plots.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_svd.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_util.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_bead_model.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_residuals.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_sh.cpp
M us_somo/develop/src/us_hydrodyn_saxs_loads.cpp
M us_somo/develop/src/us_hydrodyn_saxs_mw.cpp
M us_somo/develop/src/us_hydrodyn_saxs_plots.cpp
M us_somo/develop/src/us_hydrodyn_saxs_pr.cpp
M us_somo/develop/src/us_hydrodyn_saxs_screen.cpp
M us_somo/develop/src/us_hydrodyn_script.cpp
M us_somo/develop/src/us_hydrodyn_settings.cpp
M us_somo/develop/src/us_hydrodyn_supc.cpp
M us_somo/develop/src/us_hydrodyn_util.cpp
M us_somo/develop/src/us_hydrodyn_write.cpp
M us_somo/develop/src/us_hydrodyn_zeno.cpp
M us_somo/develop/src/us_imgviewer.cpp
M us_somo/develop/src/us_json.cpp
M us_somo/develop/src/us_matrix.cpp
M us_somo/develop/src/us_plot_util.cpp
M us_somo/develop/src/us_plot_zoom.cpp
M us_somo/develop/src/us_pm_fitness.cpp
M us_somo/develop/src/us_register.cpp
M us_somo/develop/src/us_saxs_util.cpp
M us_somo/develop/src/us_saxs_util_best.cpp
M us_somo/develop/src/us_saxs_util_guinier.cpp
M us_somo/develop/src/us_saxs_util_hydrate.cpp
M us_somo/develop/src/us_saxs_util_hydrate_align.cpp
M us_somo/develop/src/us_saxs_util_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_grid_atob_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_pat_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_supc_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_zeno_hydro.cpp
M us_somo/develop/src/us_saxs_util_iqq.cpp
M us_somo/develop/src/us_saxs_util_iqq_1d.cpp
M us_somo/develop/src/us_saxs_util_iqq_bead_model.cpp
M us_somo/develop/src/us_saxs_util_iqq_pdb.cpp
M us_somo/develop/src/us_saxs_util_loads.cpp
M us_somo/develop/src/us_saxs_util_pat.cpp
M us_somo/develop/src/us_saxs_util_pm.cpp
M us_somo/develop/src/us_saxs_util_static.cpp
M us_somo/develop/src/us_tar.cpp
M us_somo/develop/src/us_util.cpp
M us_somo/develop/src/us_zeno_cxx.cpp
M us_somo/somo/doc/manual/somo/somo-Zeno_optionsNew.png
M us_somo/somo/doc/manual/somo/somo-main0new.png
M us_somo/somo/doc/manual/somo/somo-main4.png
M us_somo/somo/doc/manual/somo/somo.html
M us_somo/somo/doc/manual/somo/somo_cluster_config.html
M us_somo/somo/doc/manual/somo/somo_hydro_zeno.html
Log Message:
-----------
Merge pull request #253 from ehb54/somo-pre-auc2025
Somo pre auc2025
Commit: f57e5fb621d9deecb494bea705f4921181d75d2f
https://github.com/ehb54/ultrascan3/commit/f57e5fb621d9deecb494bea705f4921181d75d2f
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-08-15 (Fri, 15 Aug 2025)
Changed paths:
R us_somo/develop/include/us_revision.h
Log Message:
-----------
Delete us_somo/develop/include/us_revision.h
File should not be in the master branch
Commit: b3e7a2ce827a2aa01fc3ea379e3f7d31f3ae2041
https://github.com/ehb54/ultrascan3/commit/b3e7a2ce827a2aa01fc3ea379e3f7d31f3ae2041
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-08-15 (Fri, 15 Aug 2025)
Changed paths:
R us_somo/develop/include/us_revision.h
Log Message:
-----------
Merge pull request #254 from ehb54/ehb54-issue-538-1
Delete us_somo/develop/include/us_revision.h
Commit: e6f85d995a07a80e2f9d856998eae8b128628daa
https://github.com/ehb54/ultrascan3/commit/e6f85d995a07a80e2f9d856998eae8b128628daa
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-08-16 (Sat, 16 Aug 2025)
Changed paths:
A us_somo/somo/doc/manual/somo/somo_ZENO_correction_warning.png
Log Message:
-----------
missing manual page
Commit: 2c7eb240d79827f5dfff035736fdf12f190e0cba
https://github.com/ehb54/ultrascan3/commit/2c7eb240d79827f5dfff035736fdf12f190e0cba
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-08-16 (Sat, 16 Aug 2025)
Changed paths:
M us_somo/develop/include/us3_defines.h
M us_somo/develop/src/us_saxs_util_static.cpp
Log Message:
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somo - fix for windows unicode
Commit: b6169ad5a2b7f4daab15c47ac7732818cc7c68f2
https://github.com/ehb54/ultrascan3/commit/b6169ad5a2b7f4daab15c47ac7732818cc7c68f2
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-08-16 (Sat, 16 Aug 2025)
Changed paths:
M us_somo/develop/src/us_saxs_util_static.cpp
Log Message:
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additional comment line
Commit: b43e6bb7fdc3a74faaf03cdc5edf23c76875b783
https://github.com/ehb54/ultrascan3/commit/b43e6bb7fdc3a74faaf03cdc5edf23c76875b783
Author: ehb54 <ehb54 at users.noreply.github.com>
Date: 2025-08-17 (Sun, 17 Aug 2025)
Changed paths:
M us_somo/develop/include/us3_defines.h
M us_somo/develop/src/us_saxs_util_static.cpp
A us_somo/somo/doc/manual/somo/somo_ZENO_correction_warning.png
Log Message:
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Merge pull request #255 from ehb54/ehb54-issue-538-2
missing manual page, special character issue on windows
Commit: d1d54f83278fbf935b3d77dd5369947ee304a9f8
https://github.com/ehb54/ultrascan3/commit/d1d54f83278fbf935b3d77dd5369947ee304a9f8
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-08-19 (Tue, 19 Aug 2025)
Changed paths:
M programs/us_ga_init/us_solutedata.cpp
Log Message:
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FIX: Adjust the calculation of the standard deviation for the weights
Commit: 42cef0425363b1b72f8c2a1d0d9346f1f00773b0
https://github.com/ehb54/ultrascan3/commit/42cef0425363b1b72f8c2a1d0d9346f1f00773b0
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-08-19 (Tue, 19 Aug 2025)
Changed paths:
M programs/us_ga_init/us_solutedata.cpp
Log Message:
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Merge pull request #256 from ehb54/lukas/us_ga_init_stddev
FIX: Adjust the calculation of the standard deviation for the weights
Commit: 76e2cf6ae4e764993cbd9d37d1bd086413514e3d
https://github.com/ehb54/ultrascan3/commit/76e2cf6ae4e764993cbd9d37d1bd086413514e3d
Author: aaron <aaron at aucsolutions.com>
Date: 2025-08-27 (Wed, 27 Aug 2025)
Changed paths:
M .gitignore
M test-docker.sh
A test/README
R test/README.md
M test/utils/test_us_ana_profile.cpp
M test/utils/test_us_analyte.cpp
M test/utils/test_us_astfem_math.cpp
M test/utils/test_us_astfem_rsa.cpp
M test/utils/test_us_buffer.cpp
M test/utils/test_us_crypto.cpp
M test/utils/test_us_datafiles.cpp
M test/utils/test_us_math2.cpp
M test/utils/test_us_matrix.cpp
M test/utils/test_us_memory.cpp
M test/utils/test_us_model.cpp
M test/utils/test_us_project.cpp
M test/utils/test_us_settings.cpp
M test/utils/test_us_stiffbase.cpp
M test/utils/test_us_time_state.cpp
M test/utils/test_us_util.cpp
Log Message:
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working set of util unit tests
Commit: 3a4240895ec21be113a64f6d852aa70cdc0f9455
https://github.com/ehb54/ultrascan3/commit/3a4240895ec21be113a64f6d852aa70cdc0f9455
Author: aaron <aaron at aucsolutions.com>
Date: 2025-08-27 (Wed, 27 Aug 2025)
Changed paths:
M gui/us_sim_params_gui.cpp
M gui/us_sim_params_gui.h
M gui/us_tmst_plot.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_astfem_sim/us_astfem_sim.h
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_edit/us_edit.cpp
M programs/us_fematch/us_resplot_fem.cpp
M programs/us_fit_meniscus/us_fit_meniscus.cpp
M programs/us_pseudo3d_combine/us_pseudo3d_combine.cpp
M utils/us_simparms.cpp
M utils/us_simparms.h
Log Message:
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Merge remote-tracking branch 'origin/master' into aaron-dev-test-utils
# Conflicts:
# utils/us_simparms.cpp
Commit: eb5398d2831269197d566f36400b5f80c87ac2b1
https://github.com/ehb54/ultrascan3/commit/eb5398d2831269197d566f36400b5f80c87ac2b1
Author: aaron <aaron at aucsolutions.com>
Date: 2025-08-27 (Wed, 27 Aug 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_ga_init/us_solutedata.cpp
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M us_somo/develop/include/us3_defines.h
A us_somo/develop/include/us_band_broaden.h
M us_somo/develop/include/us_hydrodyn.h
M us_somo/develop/include/us_hydrodyn_cluster_best.h
M us_somo/develop/include/us_hydrodyn_dad.h
M us_somo/develop/include/us_hydrodyn_hydro.h
M us_somo/develop/include/us_hydrodyn_hydro_zeno.h
M us_somo/develop/include/us_hydrodyn_mals.h
M us_somo/develop/include/us_hydrodyn_saxs.h
M us_somo/develop/include/us_hydrodyn_saxs_buffer.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc_ciq.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc_fit.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc_movie.h
M us_somo/develop/include/us_json.h
M us_somo/develop/include/us_matrix.h
M us_somo/develop/include/us_multi_column.h
M us_somo/develop/include/us_pfortran.h
M us_somo/develop/include/us_saxs_util.h
M us_somo/develop/include/us_tar.h
M us_somo/develop/include/us_tnt_jama.h
M us_somo/develop/include/us_unicode.h
M us_somo/develop/libus_somo.pro
M us_somo/develop/src/qwt/scrollzoomer.cpp
M us_somo/develop/src/us3i_color.cpp
M us_somo/develop/src/us3i_util.cpp
A us_somo/develop/src/us_band_broaden.cpp
M us_somo/develop/src/us_color.cpp
M us_somo/develop/src/us_config_gui.cpp
M us_somo/develop/src/us_dirhist.cpp
M us_somo/develop/src/us_ffd.cpp
M us_somo/develop/src/us_font.cpp
M us_somo/develop/src/us_fractal_dimension.cpp
M us_somo/develop/src/us_help.cpp
M us_somo/develop/src/us_hydrodyn.cpp
M us_somo/develop/src/us_hydrodyn_addatom.cpp
M us_somo/develop/src/us_hydrodyn_addhybrid.cpp
M us_somo/develop/src/us_hydrodyn_addresidue.cpp
M us_somo/develop/src/us_hydrodyn_addsaxs.cpp
M us_somo/develop/src/us_hydrodyn_batch.cpp
M us_somo/develop/src/us_hydrodyn_bd_core.cpp
M us_somo/develop/src/us_hydrodyn_bd_load_results_opts.cpp
M us_somo/develop/src/us_hydrodyn_bd_options.cpp
M us_somo/develop/src/us_hydrodyn_beads.cpp
M us_somo/develop/src/us_hydrodyn_beads_load.cpp
M us_somo/develop/src/us_hydrodyn_cluster.cpp
M us_somo/develop/src/us_hydrodyn_cluster_advanced.cpp
M us_somo/develop/src/us_hydrodyn_cluster_best.cpp
M us_somo/develop/src/us_hydrodyn_cluster_results.cpp
M us_somo/develop/src/us_hydrodyn_cluster_status.cpp
M us_somo/develop/src/us_hydrodyn_cluster_submit.cpp
M us_somo/develop/src/us_hydrodyn_core.cpp
M us_somo/develop/src/us_hydrodyn_dad.cpp
M us_somo/develop/src/us_hydrodyn_dad_gg.cpp
M us_somo/develop/src/us_hydrodyn_dad_gui.cpp
M us_somo/develop/src/us_hydrodyn_dad_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_bb.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_guinier.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_powerfit.cpp
M us_somo/develop/src/us_hydrodyn_dad_movie.cpp
M us_somo/develop/src/us_hydrodyn_dad_options.cpp
M us_somo/develop/src/us_hydrodyn_dad_parameters.cpp
M us_somo/develop/src/us_hydrodyn_dad_plots.cpp
M us_somo/develop/src/us_hydrodyn_dad_svd.cpp
M us_somo/develop/src/us_hydrodyn_dad_util.cpp
M us_somo/develop/src/us_hydrodyn_dammin_opts.cpp
M us_somo/develop/src/us_hydrodyn_fractal_dimension.cpp
M us_somo/develop/src/us_hydrodyn_grid_atob.cpp
M us_somo/develop/src/us_hydrodyn_grpy.cpp
M us_somo/develop/src/us_hydrodyn_hydrate.cpp
M us_somo/develop/src/us_hydrodyn_hydrate_align.cpp
M us_somo/develop/src/us_hydrodyn_hydro.cpp
M us_somo/develop/src/us_hydrodyn_hydro_zeno.cpp
M us_somo/develop/src/us_hydrodyn_info.cpp
M us_somo/develop/src/us_hydrodyn_load.cpp
M us_somo/develop/src/us_hydrodyn_mals.cpp
M us_somo/develop/src/us_hydrodyn_mals_gg.cpp
M us_somo/develop/src/us_hydrodyn_mals_gui.cpp
M us_somo/develop/src/us_hydrodyn_mals_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_mals_modes_bb.cpp
M us_somo/develop/src/us_hydrodyn_mals_modes_guinier.cpp
M us_somo/develop/src/us_hydrodyn_mals_movie.cpp
M us_somo/develop/src/us_hydrodyn_mals_options.cpp
M us_somo/develop/src/us_hydrodyn_mals_plots.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_gg.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_gui.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_bb.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_guinier.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_scale.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_movie.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_options.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_plots.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_svd.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_util.cpp
M us_somo/develop/src/us_hydrodyn_mals_svd.cpp
M us_somo/develop/src/us_hydrodyn_mals_util.cpp
M us_somo/develop/src/us_hydrodyn_misc.cpp
M us_somo/develop/src/us_hydrodyn_other.cpp
M us_somo/develop/src/us_hydrodyn_pat.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool_merge.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool_util.cpp
M us_somo/develop/src/us_hydrodyn_results.cpp
M us_somo/develop/src/us_hydrodyn_save.cpp
M us_somo/develop/src/us_hydrodyn_saxs.cpp
M us_somo/develop/src/us_hydrodyn_saxs_1d.cpp
M us_somo/develop/src/us_hydrodyn_saxs_2d.cpp
M us_somo/develop/src/us_hydrodyn_saxs_buffer.cpp
A us_somo/develop/src/us_hydrodyn_saxs_buffer_fit.cpp
A us_somo/develop/src/us_hydrodyn_saxs_buffer_gui.cpp
M us_somo/develop/src/us_hydrodyn_saxs_cormap.cpp
M us_somo/develop/src/us_hydrodyn_saxs_guinier.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_ciq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_fit.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_gg.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_gui.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_bb.cpp
A us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_broaden.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_wheel.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_movie.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_options.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_plots.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_svd.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_util.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_bead_model.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_residuals.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_sh.cpp
M us_somo/develop/src/us_hydrodyn_saxs_loads.cpp
M us_somo/develop/src/us_hydrodyn_saxs_mw.cpp
M us_somo/develop/src/us_hydrodyn_saxs_plots.cpp
M us_somo/develop/src/us_hydrodyn_saxs_pr.cpp
M us_somo/develop/src/us_hydrodyn_saxs_screen.cpp
M us_somo/develop/src/us_hydrodyn_script.cpp
M us_somo/develop/src/us_hydrodyn_settings.cpp
M us_somo/develop/src/us_hydrodyn_supc.cpp
M us_somo/develop/src/us_hydrodyn_util.cpp
M us_somo/develop/src/us_hydrodyn_write.cpp
M us_somo/develop/src/us_hydrodyn_zeno.cpp
M us_somo/develop/src/us_imgviewer.cpp
M us_somo/develop/src/us_json.cpp
M us_somo/develop/src/us_matrix.cpp
M us_somo/develop/src/us_plot_util.cpp
M us_somo/develop/src/us_plot_zoom.cpp
M us_somo/develop/src/us_pm_fitness.cpp
M us_somo/develop/src/us_register.cpp
M us_somo/develop/src/us_saxs_util.cpp
M us_somo/develop/src/us_saxs_util_best.cpp
M us_somo/develop/src/us_saxs_util_guinier.cpp
M us_somo/develop/src/us_saxs_util_hydrate.cpp
M us_somo/develop/src/us_saxs_util_hydrate_align.cpp
M us_somo/develop/src/us_saxs_util_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_grid_atob_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_pat_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_supc_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_zeno_hydro.cpp
M us_somo/develop/src/us_saxs_util_iqq.cpp
M us_somo/develop/src/us_saxs_util_iqq_1d.cpp
M us_somo/develop/src/us_saxs_util_iqq_bead_model.cpp
M us_somo/develop/src/us_saxs_util_iqq_pdb.cpp
M us_somo/develop/src/us_saxs_util_loads.cpp
M us_somo/develop/src/us_saxs_util_pat.cpp
M us_somo/develop/src/us_saxs_util_pm.cpp
M us_somo/develop/src/us_saxs_util_static.cpp
M us_somo/develop/src/us_tar.cpp
M us_somo/develop/src/us_util.cpp
M us_somo/develop/src/us_zeno_cxx.cpp
M us_somo/somo/doc/manual/somo/somo-Zeno_optionsNew.png
M us_somo/somo/doc/manual/somo/somo-main0new.png
M us_somo/somo/doc/manual/somo/somo-main4.png
M us_somo/somo/doc/manual/somo/somo.html
A us_somo/somo/doc/manual/somo/somo_ZENO_correction_warning.png
M us_somo/somo/doc/manual/somo/somo_cluster_config.html
M us_somo/somo/doc/manual/somo/somo_hydro_zeno.html
M utils/us_model.cpp
M utils/us_model.h
Log Message:
-----------
Merge remote-tracking branch 'origin/master' into aaron-dev-test-utils
Commit: 6c17ff96ca055f6cc43eeb2532d0eceab53580b3
https://github.com/ehb54/ultrascan3/commit/6c17ff96ca055f6cc43eeb2532d0eceab53580b3
Author: aaron <aaron at aucsolutions.com>
Date: 2025-08-27 (Wed, 27 Aug 2025)
Changed paths:
M utils/us_solution.cpp
Log Message:
-----------
set to lowercase ius_db2.h
Commit: 483c6d095b00b75710d4feeb2d9b996f0a4bd213
https://github.com/ehb54/ultrascan3/commit/483c6d095b00b75710d4feeb2d9b996f0a4bd213
Author: aaron <aaron at aucsolutions.com>
Date: 2025-08-27 (Wed, 27 Aug 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
A admin/test/cmake/hints.cmake
M admin/test/docker/Dockerfile
M test-docker.sh
Log Message:
-----------
add cmake hint file
Commit: 76997c2b070b1a6fdab90be7c72e7ae8d8e7271f
https://github.com/ehb54/ultrascan3/commit/76997c2b070b1a6fdab90be7c72e7ae8d8e7271f
Author: aaron <aaron at aucsolutions.com>
Date: 2025-08-27 (Wed, 27 Aug 2025)
Changed paths:
M utils/us_simparms.cpp
Log Message:
-----------
iusdb changes
Commit: 295b4c9f222964264a4f4f2c9890d5b9f9d61f24
https://github.com/ehb54/ultrascan3/commit/295b4c9f222964264a4f4f2c9890d5b9f9d61f24
Author: aaron <aaron at aucsolutions.com>
Date: 2025-08-27 (Wed, 27 Aug 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
M .github/workflows/static-analysis.yml
M utils/ius_db2.h
Log Message:
-----------
iusdb add qstring constuctor, turn off static analysis, move safe directory config
Commit: 4ba0f871fcfc325f8d6405a2a94f8ffdca1b09e3
https://github.com/ehb54/ultrascan3/commit/4ba0f871fcfc325f8d6405a2a94f8ffdca1b09e3
Author: aaron <aaron at aucsolutions.com>
Date: 2025-08-27 (Wed, 27 Aug 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
M gui/us_abstractrotor_gui.cpp
Log Message:
-----------
error in gui build related to iusdb2
Commit: 44bab627dcc91b01e021d5332de8d038b7bc3de4
https://github.com/ehb54/ultrascan3/commit/44bab627dcc91b01e021d5332de8d038b7bc3de4
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-08-28 (Thu, 28 Aug 2025)
Changed paths:
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
GMP | R&D: 2. LIVE_UPDATE -- potential fixes for dropped usiab-to-optima connection during various live update stages...
Commit: 54c57691b594fde24dc40f2e99e4c3f485207899
https://github.com/ehb54/ultrascan3/commit/54c57691b594fde24dc40f2e99e4c3f485207899
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-08-28 (Thu, 28 Aug 2025)
Changed paths:
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
[1]GMP | R&D: 2. LIVE_UPDATE -- potential fixes for dropped usiab-to-optima connection during various live update stages...
Commit: 6eb23eb217129f6cfa083e4c2d132b81eeb79449
https://github.com/ehb54/ultrascan3/commit/6eb23eb217129f6cfa083e4c2d132b81eeb79449
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-08-28 (Thu, 28 Aug 2025)
Changed paths:
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
[2]GMP | R&D: 2. LIVE_UPDATE -- potential fixes for dropped usiab-to-optima connection during various live update stages...
Commit: b8424a8bc274fff5f4fb289c552e31023d1ec512
https://github.com/ehb54/ultrascan3/commit/b8424a8bc274fff5f4fb289c552e31023d1ec512
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-08-28 (Thu, 28 Aug 2025)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
Log Message:
-----------
GMP | R&D: Run MANAGER -- fix for the wrong event on refreshig Optima Runs Statuses causing forced setting new experiment upon attemt to re-attach...
Commit: a6089455c047284229de979dc3cff6160bedc1e0
https://github.com/ehb54/ultrascan3/commit/a6089455c047284229de979dc3cff6160bedc1e0
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-08-29 (Fri, 29 Aug 2025)
Changed paths:
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
Log Message:
-----------
Merge pull request #258 from ehb54/alexey-dev-issue545
GMP | R&D: Run MANAGER -- fix for the wrong event on refreshig Optima…
Commit: 55c201891699765e68d8771a3dd08daf89b25169
https://github.com/ehb54/ultrascan3/commit/55c201891699765e68d8771a3dd08daf89b25169
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-08-29 (Fri, 29 Aug 2025)
Changed paths:
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
Log Message:
-----------
Merge pull request #257 from ehb54/alexey-dev-issue544
GMP | R&D: 2. LIVE_UPDATE -- potential fixes for dropped usiab-to-optima
Commit: 217485a90c5e92e0e810e5e3dfe2dac0177b8b35
https://github.com/ehb54/ultrascan3/commit/217485a90c5e92e0e810e5e3dfe2dac0177b8b35
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M CMakeLists.txt
A admin/cmake/FindQwt.cmake
A admin/cmake/us_version.h.in
R admin/test/cmake/hints.cmake
M admin/test/docker/Dockerfile
M gui/CMakeLists.txt
M gui/us_buffer_gui.cpp
M gui/us_data_loader.cpp
M gui/us_failed_gmp_run_gui.cpp
M gui/us_load_auc.cpp
M gui/us_loadable_noise.cpp
M gui/us_model_gui.cpp
M gui/us_model_loader.cpp
M gui/us_noise_loader.cpp
M gui/us_noise_loader.h
M gui/us_project_gui.cpp
M gui/us_rotor_gui.cpp
M gui/us_solution_gui.cpp
A programs/CMakeLists.txt
M programs/us/us.cpp
M programs/us/us_win_data.cpp
A programs/us_autoflow_analysis/CMakeLists.txt
A programs/us_com_project/CMakelists.txt
A programs/us_com_project_academic/CMakeLists.txt
M programs/us_config/us_database.cpp
M programs/us_config/us_xpnhost_db.cpp
M programs/us_convert/us_select_triples.h
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_ddist_combine.h
M programs/us_edit/us_edit.cpp
A programs/us_experiment/CMakeLists.txt
A programs/us_fematch/CMakeLists.txt
A programs/us_fit_meniscus/CMakeLists.txt
A programs/us_mwl_species_fit/CMakeLists.txt
M programs/us_pcsa/us_pcsa.cpp
A programs/us_protocol_dev/CMakeLists.txt
A programs/us_query_rmsd/CMakeLists.txt
M programs/us_ramp/us_experiment_gui_ra.cpp
M programs/us_ramp/us_get_dbrun_ra.cpp
M programs/us_ramp/us_ramp_gui.cpp
A programs/us_reporter_gmp/CMakeLists.txt
M test-docker.sh
M test/utils/CMakeLists.txt
M test/utils/test_us_astfem_rsa.cpp
M test/utils/test_us_buffer.cpp
M test/utils/test_us_db2.cpp
M utils/CMakeLists.txt
Log Message:
-----------
error in build related to iusdb2, cmake build for programs, and working unit tests
Commit: 8401655782f10eb593ea8537ea59378e3da8f03b
https://github.com/ehb54/ultrascan3/commit/8401655782f10eb593ea8537ea59378e3da8f03b
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
A .github/workflows/unit-tests.yml
Log Message:
-----------
move unit tests trigger to separate file
Commit: 73021e71e98437f3583fc6edcaf0fe2faf72d5fd
https://github.com/ehb54/ultrascan3/commit/73021e71e98437f3583fc6edcaf0fe2faf72d5fd
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M programs/us_com_project/CMakelists.txt
A qwtplot3d/CMakeLists.txt
Log Message:
-----------
add us_com_project cmakelists
Commit: c9030ec25f5d2ce4547c140beaf0d06baa785f4a
https://github.com/ehb54/ultrascan3/commit/c9030ec25f5d2ce4547c140beaf0d06baa785f4a
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
A programs/us_com_project/CMakeLists.txt
R programs/us_com_project/CMakelists.txt
Log Message:
-----------
fix us_com_project cmakelists had lowercase l in name
Commit: 7edcb7cb1815454a3c1517671b8f46ba157b7fd5
https://github.com/ehb54/ultrascan3/commit/7edcb7cb1815454a3c1517671b8f46ba157b7fd5
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
modifed static-analysis.yml should not run and not send email
Commit: a414cfc8f6a9b899f987a41925b89b2a948b954a
https://github.com/ehb54/ultrascan3/commit/a414cfc8f6a9b899f987a41925b89b2a948b954a
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
modifed static-analysis.yml running but non-failing
Commit: 09d7e2075e6ba517445079e50e2410866d36ef05
https://github.com/ehb54/ultrascan3/commit/09d7e2075e6ba517445079e50e2410866d36ef05
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
modifed static-analysis.yml install libqwt-qt5-dev
Commit: 6014d3b78be1f58f196982b8e963eb9a1fd10650
https://github.com/ehb54/ultrascan3/commit/6014d3b78be1f58f196982b8e963eb9a1fd10650
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
modifed static-analysis.yml use cmake
Commit: 86802e7c8b63d5dafae200d92ab4edd449a76122
https://github.com/ehb54/ultrascan3/commit/86802e7c8b63d5dafae200d92ab4edd449a76122
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
modifed static-analysis.yml use cmake
Commit: 1c1fe3aebbc7885934e26733499fdc6e3443cd25
https://github.com/ehb54/ultrascan3/commit/1c1fe3aebbc7885934e26733499fdc6e3443cd25
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-01 (Mon, 01 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
modifed static-analysis.yml remove format check
Commit: 545dd0c591ceb5f40b85403fe9d72a8dc2079608
https://github.com/ehb54/ultrascan3/commit/545dd0c591ceb5f40b85403fe9d72a8dc2079608
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-02 (Tue, 02 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
fix static-analysis.yml only check changed files
Commit: ff38446e4155e613f61b9ccfdadc5141796dba1d
https://github.com/ehb54/ultrascan3/commit/ff38446e4155e613f61b9ccfdadc5141796dba1d
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-02 (Tue, 02 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
fix static-analysis.yml env variable handling
Commit: 44dc6b5ad0d3a3b1288a71a6096e71bcf767d2fb
https://github.com/ehb54/ultrascan3/commit/44dc6b5ad0d3a3b1288a71a6096e71bcf767d2fb
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-02 (Tue, 02 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
fix static-analysis.yml env variable handling
Commit: ef4c4e8e42954ff80a0ef6df92e9b990b7edaa68
https://github.com/ehb54/ultrascan3/commit/ef4c4e8e42954ff80a0ef6df92e9b990b7edaa68
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-02 (Tue, 02 Sep 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
M .github/workflows/static-analysis.yml
M .github/workflows/unit-tests.yml
Log Message:
-----------
mod workflow triggers to push or pr on master only
Commit: befe3e2ed9031970d5d93eb3b0080c35868d586b
https://github.com/ehb54/ultrascan3/commit/befe3e2ed9031970d5d93eb3b0080c35868d586b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-02 (Tue, 02 Sep 2025)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
Log Message:
-----------
GMP | 1. EXP.: 8.Aprofile -- custom grid implementation...
Commit: a757689d32acc3aff80b1e0c9b5d4f580c01ffc9
https://github.com/ehb54/ultrascan3/commit/a757689d32acc3aff80b1e0c9b5d4f580c01ffc9
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-02 (Tue, 02 Sep 2025)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
Log Message:
-----------
[2]GMP | 1. EXP.: 8.Aprofile -- custom grid implementation...
Commit: 6f9f6d81148a6128933c1a30c8960fc7b0ca9b18
https://github.com/ehb54/ultrascan3/commit/6f9f6d81148a6128933c1a30c8960fc7b0ca9b18
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-02 (Tue, 02 Sep 2025)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
Log Message:
-----------
[3]GMP | 1. EXP.: 8.Aprofile -- custom grid implementation...
Commit: 826cea37317d3d85e5a6c1e9f49a6f11a4456568
https://github.com/ehb54/ultrascan3/commit/826cea37317d3d85e5a6c1e9f49a6f11a4456568
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-02 (Tue, 02 Sep 2025)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
Log Message:
-----------
[4]GMP | 1. EXP.: 8.Aprofile -- custom grid implementation...
Commit: f1864dd5785437638d1fe97073331b90c06e7c22
https://github.com/ehb54/ultrascan3/commit/f1864dd5785437638d1fe97073331b90c06e7c22
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-02 (Tue, 02 Sep 2025)
Changed paths:
M utils/us_ana_profile.cpp
Log Message:
-----------
[5]GMP | 1. EXP.: 8.Aprofile -- custom grid implementation...
Commit: 71f24752c7eede2c90f377adda0d7a22bdacb0a5
https://github.com/ehb54/ultrascan3/commit/71f24752c7eede2c90f377adda0d7a22bdacb0a5
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-02 (Tue, 02 Sep 2025)
Changed paths:
M utils/us_ana_profile.cpp
Log Message:
-----------
[6]GMP | 1. EXP.: 8.Aprofile -- custom grid implementation...
Commit: b3affb0867414d2529ed378da6d7a56014388ffc
https://github.com/ehb54/ultrascan3/commit/b3affb0867414d2529ed378da6d7a56014388ffc
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-02 (Tue, 02 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | 6. REPORT -- modify presentaion in case of CG...
Commit: f254035dd92e63c66f56cf040d8b7a153ccf21c1
https://github.com/ehb54/ultrascan3/commit/f254035dd92e63c66f56cf040d8b7a153ccf21c1
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-09-04 (Thu, 04 Sep 2025)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M utils/us_ana_profile.cpp
Log Message:
-----------
Merge pull request #259 from ehb54/alexey-dev-issue543
Alexey dev issue543: Custom Grid in GMP, GUI/protocol/report portions
Commit: 42e26337f0dd52027b91e41ba3af0f9e1b626a24
https://github.com/ehb54/ultrascan3/commit/42e26337f0dd52027b91e41ba3af0f9e1b626a24
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-04 (Thu, 04 Sep 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
M .gitignore
R admin/codeql/custom-queries/cpp/codeql-pack.yml
R admin/codeql/custom-queries/cpp/find-unused-functions.ql
M gui/CMakeLists.txt
M gui/us_buffer_gui.cpp
M gui/us_data_loader.cpp
M gui/us_load_auc.cpp
M gui/us_loadable_noise.cpp
R gui/us_model_editor.cpp
R gui/us_model_editor.h
M gui/us_model_gui.cpp
M gui/us_model_loader.h
M gui/us_noise_loader.h
M programs/us_2dsa/us_2dsa.cpp
M programs/us_edit/us_edit.h
M utils/us_xpn_data.cpp
Log Message:
-----------
code cleanup before PR review
Commit: 895bcceea66cf95608da4f456620659d8e9517d5
https://github.com/ehb54/ultrascan3/commit/895bcceea66cf95608da4f456620659d8e9517d5
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-09-04 (Thu, 04 Sep 2025)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M utils/us_ana_profile.cpp
Log Message:
-----------
Merge pull request #260 from ehb54/master
commit update
Commit: 19e27c3ec7093c10f143441101c85d0af09b12ac
https://github.com/ehb54/ultrascan3/commit/19e27c3ec7093c10f143441101c85d0af09b12ac
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-05 (Fri, 05 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
mod: better reporting of critical issues
Commit: 3d25a66f7dcdd4e3a849f5ea31ae253f22c303be
https://github.com/ehb54/ultrascan3/commit/3d25a66f7dcdd4e3a849f5ea31ae253f22c303be
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-05 (Fri, 05 Sep 2025)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
M utils/us_ana_profile.cpp
Log Message:
-----------
Merge remote-tracking branch 'origin/aaron-dev-test-utils' into aaron-dev-test-utils
Commit: eaf7d5bc8dae71e71e890cbec10deb318fe0862c
https://github.com/ehb54/ultrascan3/commit/eaf7d5bc8dae71e71e890cbec10deb318fe0862c
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-05 (Fri, 05 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
mod: artifact upload fix
Commit: f04888d7116e9c5498dd5a316307e9f4dc238d40
https://github.com/ehb54/ultrascan3/commit/f04888d7116e9c5498dd5a316307e9f4dc238d40
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-06 (Sat, 06 Sep 2025)
Changed paths:
M .github/workflows/static-analysis.yml
Log Message:
-----------
fix: critical static analysis only
Commit: d9ed24af5742fb54910d7c1d9873b57c528b4661
https://github.com/ehb54/ultrascan3/commit/d9ed24af5742fb54910d7c1d9873b57c528b4661
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-06 (Sat, 06 Sep 2025)
Changed paths:
M CMakeLists.txt
M admin/cmake/FindQwt.cmake
M gui/CMakeLists.txt
M programs/us_autoflow_analysis/CMakeLists.txt
M programs/us_com_project/CMakeLists.txt
M programs/us_com_project_academic/CMakeLists.txt
M programs/us_experiment/CMakeLists.txt
M programs/us_fematch/CMakeLists.txt
M programs/us_fit_meniscus/CMakeLists.txt
M programs/us_mwl_species_fit/CMakeLists.txt
M programs/us_protocol_dev/CMakeLists.txt
M programs/us_query_rmsd/CMakeLists.txt
M programs/us_reporter_gmp/CMakeLists.txt
M qwtplot3d/CMakeLists.txt
M test/utils/test_us_settings.cpp
M utils/CMakeLists.txt
Log Message:
-----------
mod: address review comments
Commit: 52d2e12f19167416a58de29b71876a11edd2caf6
https://github.com/ehb54/ultrascan3/commit/52d2e12f19167416a58de29b71876a11edd2caf6
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-12 (Fri, 12 Sep 2025)
Changed paths:
M programs/us_analysis_profile/us_analysis_profile.cpp
M utils/us_ana_profile.cpp
M utils/us_ana_profile.h
Log Message:
-----------
GMP | 1. EXP.: 8.Aprofile -- [Add model ID to framework]custom grid implementation...
Commit: 5c1814ae911784afd312e835594b931008d8bed4
https://github.com/ehb54/ultrascan3/commit/5c1814ae911784afd312e835594b931008d8bed4
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-12 (Fri, 12 Sep 2025)
Changed paths:
M utils/us_ana_profile.cpp
Log Message:
-----------
[1]GMP | 1. EXP.: 8.Aprofile -- [Add model ID to framework]custom grid implementation...
Commit: 4e5d8b4cc07c2a5c5065886cf61e61c76fafffad
https://github.com/ehb54/ultrascan3/commit/4e5d8b4cc07c2a5c5065886cf61e61c76fafffad
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-14 (Sun, 14 Sep 2025)
Changed paths:
M utils/us_ana_profile.cpp
Log Message:
-----------
[2]GMP | 1. EXP.: 8.Aprofile -- [Add model ID to framework]custom grid implementation...ush
Commit: 747e42f7732dc906533cbd0cd954e81e3e565d98
https://github.com/ehb54/ultrascan3/commit/747e42f7732dc906533cbd0cd954e81e3e565d98
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-15 (Mon, 15 Sep 2025)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_fit_meniscus/us_fit_meniscus.cpp
Log Message:
-----------
GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...
Commit: 0337b97ebfe25072971b60c29b4a2d390667da17
https://github.com/ehb54/ultrascan3/commit/0337b97ebfe25072971b60c29b4a2d390667da17
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-15 (Mon, 15 Sep 2025)
Changed paths:
M programs/us_fit_meniscus/us_fit_meniscus_main.cpp
Log Message:
-----------
[test1]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...
Commit: 77987890dfd45f62499deda691795b2e88ed4c26
https://github.com/ehb54/ultrascan3/commit/77987890dfd45f62499deda691795b2e88ed4c26
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-15 (Mon, 15 Sep 2025)
Changed paths:
M programs/us_fit_meniscus/us_fit_meniscus_main.cpp
Log Message:
-----------
[test2]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...
Commit: f0d642fb0b9364e641fb3119b5eb5f3d9a70d908
https://github.com/ehb54/ultrascan3/commit/f0d642fb0b9364e641fb3119b5eb5f3d9a70d908
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-15 (Mon, 15 Sep 2025)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_fit_meniscus/us_fit_meniscus.cpp
Log Message:
-----------
[test4]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...
Commit: cabec77d85cef315e34c7a7362b56b19524d3972
https://github.com/ehb54/ultrascan3/commit/cabec77d85cef315e34c7a7362b56b19524d3972
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-15 (Mon, 15 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[test5]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...
Commit: ffb3fb9dc2da42d44a60eaefd9a678aea956a204
https://github.com/ehb54/ultrascan3/commit/ffb3fb9dc2da42d44a60eaefd9a678aea956a204
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-15 (Mon, 15 Sep 2025)
Changed paths:
M gui/us_model_loader.cpp
Log Message:
-----------
[test6]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...
Commit: 8373d17ba7f453a11426f8935218990b8e317f51
https://github.com/ehb54/ultrascan3/commit/8373d17ba7f453a11426f8935218990b8e317f51
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-16 (Tue, 16 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[test77]GMP | 5. ANALYSIS -- fix for false 'no -FM data' message triggering for the newly developed custom grid analysis...
Commit: d29359d571538fdcdba340546c1ace762f2585f7
https://github.com/ehb54/ultrascan3/commit/d29359d571538fdcdba340546c1ace762f2585f7
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-09-16 (Tue, 16 Sep 2025)
Changed paths:
M utils/us_astfem_math.cpp
M utils/us_astfem_math.h
Log Message:
-----------
Add function to check acceleration rate and first scan validity
Introduced `check_acceleration()` in `US_AstfemMath` to validate acceleration rates and detect potential issues with first scan timing. Enhanced error reporting for experiments with low acceleration or scans during acceleration phase. Updated header file accordingly.
Commit: 00b9132e2f4a788b4b056a3277c0b52a4f0adec4
https://github.com/ehb54/ultrascan3/commit/00b9132e2f4a788b4b056a3277c0b52a4f0adec4
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-09-16 (Tue, 16 Sep 2025)
Changed paths:
M programs/us_2dsa/us_2dsa.cpp
Log Message:
-----------
Refactor speed step validation logic and integrate `check_acceleration()`
Replaced manual speed step validation with the `check_acceleration()` function from `US_AstfemMath`, improving modularity and error detection. Enhanced message box handling for better user feedback on scan timing and acceleration issues.
Commit: b3b5449d21badd09a6c72964db5f09a1c6ac22ab
https://github.com/ehb54/ultrascan3/commit/b3b5449d21badd09a6c72964db5f09a1c6ac22ab
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-09-16 (Tue, 16 Sep 2025)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
Log Message:
-----------
Replace manual acceleration checks with `check_acceleration()` helper
Streamlined acceleration validation using `US_AstfemMath::check_acceleration()` for improved modularity, reduced code redundancy, and enhanced error handling. Updated message box logic to display detailed user feedback when issues are detected.
Commit: e7990f3902c576ee20053e446ae508e1d193ef29
https://github.com/ehb54/ultrascan3/commit/e7990f3902c576ee20053e446ae508e1d193ef29
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-09-16 (Tue, 16 Sep 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
Refactor message box logic and integrate updated `check_acceleration()` validation
Simplified acceleration validation by utilizing `US_AstfemMath::check_acceleration()`. Streamlined message box handling to improve readability and user feedback for experiments with acceleration issues.
Commit: 31e99caf2928581de4943b1119be73a9436d1447
https://github.com/ehb54/ultrascan3/commit/31e99caf2928581de4943b1119be73a9436d1447
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-09-16 (Tue, 16 Sep 2025)
Changed paths:
M programs/us_experiment/us_experiment_gui_optima.cpp
Log Message:
-----------
Remove obsolete low acceleration check and associated UI logic
Eliminated redundant low acceleration validation and message box logic from `us_experiment_gui_optima.cpp`, simplifying the code and improving maintainability.
Commit: 91d63509d1f79d315225eff1b2d7fb5b6115ecc3
https://github.com/ehb54/ultrascan3/commit/91d63509d1f79d315225eff1b2d7fb5b6115ecc3
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-09-16 (Tue, 16 Sep 2025)
Changed paths:
M programs/us_fematch/us_fematch.cpp
Log Message:
-----------
Replace manual acceleration UI logic with `check_acceleration()` integration
Streamlined acceleration validation by utilizing `US_AstfemMath::check_acceleration()`. Removed redundant manual checks and simplified message box handling for improved user feedback and code maintainability.
Commit: a460bef08c775745062f6fe891f2893e2002d117
https://github.com/ehb54/ultrascan3/commit/a460bef08c775745062f6fe891f2893e2002d117
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-09-16 (Tue, 16 Sep 2025)
Changed paths:
M programs/us_mpi_analysis/us_mpi_analysis.cpp
Log Message:
-----------
Replace manual acceleration UI logic with `check_acceleration()` integration
Streamlined acceleration validation by utilizing `US_AstfemMath::check_acceleration()`. Removed redundant manual checks and simplified message box handling for improved user feedback and code maintainability.
Commit: 009aba4948371da1e6e6f05f46f5a11c092b324c
https://github.com/ehb54/ultrascan3/commit/009aba4948371da1e6e6f05f46f5a11c092b324c
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-09-16 (Tue, 16 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
Integrate `check_acceleration()` in `us_reporter_gmp.cpp`
Replaced manual acceleration checks with `US_AstfemMath::check_acceleration()`, streamlining validation and improving error reporting with enhanced message box logic. Removed redundant code for better maintainability.
Commit: bee67ad94ebbc7c9821dc0aad18e6bce737b4568
https://github.com/ehb54/ultrascan3/commit/bee67ad94ebbc7c9821dc0aad18e6bce737b4568
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-09-16 (Tue, 16 Sep 2025)
Changed paths:
M utils/us_astfem_math.cpp
Log Message:
-----------
Update utils/us_astfem_math.cpp
Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com>
Commit: 227d32eb57b85946a3d39e4643719738eeddabb5
https://github.com/ehb54/ultrascan3/commit/227d32eb57b85946a3d39e4643719738eeddabb5
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-09-16 (Tue, 16 Sep 2025)
Changed paths:
M utils/us_astfem_math.cpp
Log Message:
-----------
Update utils/us_astfem_math.cpp
Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com>
Commit: fa44532656ec9a8863fe76d5878356f412f827fb
https://github.com/ehb54/ultrascan3/commit/fa44532656ec9a8863fe76d5878356f412f827fb
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-09-16 (Tue, 16 Sep 2025)
Changed paths:
M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
Log Message:
-----------
Integrate `check_acceleration()` in `us_vhw_enhanced.cpp`
Added validation for acceleration profiles using `US_AstfemMath::check_acceleration()`. Enhanced message box logic for user feedback and streamlined error handling for scan data issues.
Commit: 3b4ade0ff450252975099029f53fae26589346a6
https://github.com/ehb54/ultrascan3/commit/3b4ade0ff450252975099029f53fae26589346a6
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-09-16 (Tue, 16 Sep 2025)
Changed paths:
M gui/us_analysis_base2.cpp
Log Message:
-----------
Integrate `check_acceleration()` in `us_analysis_base2.cpp` in order to add it to us_second_moment, us_dcdt, us_pcsa
Added acceleration validation leveraging `US_AstfemMath::check_acceleration()`. Enhanced message box logic for user feedback and streamlined error handling for scan data issues.
Commit: 9fb462a87d5cfef990e583e0aa8dda091841052b
https://github.com/ehb54/ultrascan3/commit/9fb462a87d5cfef990e583e0aa8dda091841052b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-16 (Tue, 16 Sep 2025)
Changed paths:
M programs/us_fematch/us_resplot_fem.cpp
Log Message:
-----------
[debug]GMP | 6. REPORT: CG -- ...
Commit: 42982afb88ddce0d00ece507d399d59735905d72
https://github.com/ehb54/ultrascan3/commit/42982afb88ddce0d00ece507d399d59735905d72
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-16 (Tue, 16 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[debug1]GMP | 6. REPORT: CG -- ...
Commit: 493798b230e227ab68985ca50882c28058efd160
https://github.com/ehb54/ultrascan3/commit/493798b230e227ab68985ca50882c28058efd160
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-16 (Tue, 16 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[debug2]GMP | 6. REPORT: CG -- ...
Commit: a468cc16f534c3769ca2b90b209848d226d596fc
https://github.com/ehb54/ultrascan3/commit/a468cc16f534c3769ca2b90b209848d226d596fc
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-16 (Tue, 16 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[debug3]GMP | 6. REPORT: CG -- ...
Commit: 35851638d1fc647e0bd2dd3861e329898ac2fec1
https://github.com/ehb54/ultrascan3/commit/35851638d1fc647e0bd2dd3861e329898ac2fec1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-16 (Tue, 16 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[debug4]GMP | 6. REPORT: CG -- ...
Commit: 8de77f30a55f3d955960b24d9fc654f85a643da1
https://github.com/ehb54/ultrascan3/commit/8de77f30a55f3d955960b24d9fc654f85a643da1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-16 (Tue, 16 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[debug5]GMP | 6. REPORT: CG -- ...
Commit: 116f06f0e3cb97e592455a896ea074987b1d687d
https://github.com/ehb54/ultrascan3/commit/116f06f0e3cb97e592455a896ea074987b1d687d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-16 (Tue, 16 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[debug5]GMP | 6. REPORT: CG -- ...
Commit: ada9fc194b6107aa9234582f328928f990f49ab8
https://github.com/ehb54/ultrascan3/commit/ada9fc194b6107aa9234582f328928f990f49ab8
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-16 (Tue, 16 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[debug7]GMP | 6. REPORT: CG -- ...
Commit: 32bb4b7a5dc2070311763e159ad64dab3cc648d4
https://github.com/ehb54/ultrascan3/commit/32bb4b7a5dc2070311763e159ad64dab3cc648d4
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-09-18 (Thu, 18 Sep 2025)
Changed paths:
M doc/manual/advanced_config.body
Log Message:
-----------
Enhance advanced_config documentation with new flags
Added detailed descriptions for various configuration flags related to debugging and speed settings.
Commit: b52f75b2a6792fda0bab5a3eb02250629eed0b4a
https://github.com/ehb54/ultrascan3/commit/b52f75b2a6792fda0bab5a3eb02250629eed0b4a
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-09-18 (Thu, 18 Sep 2025)
Changed paths:
M doc/manual/advanced_config.body
Log Message:
-----------
Update wording
Co-authored-by: Copilot <175728472+Copilot at users.noreply.github.com>
Commit: 62d4ea94709d6f723457f2bc6436f79c5486ddae
https://github.com/ehb54/ultrascan3/commit/62d4ea94709d6f723457f2bc6436f79c5486ddae
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-09-18 (Thu, 18 Sep 2025)
Changed paths:
M doc/manual/advanced_config.body
Log Message:
-----------
Update hsclogo description in advanced_config
Commit: 803cac4e0551cf55251878109066602030536089
https://github.com/ehb54/ultrascan3/commit/803cac4e0551cf55251878109066602030536089
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-09-18 (Thu, 18 Sep 2025)
Changed paths:
M programs/us_fematch/us_fematch.cpp
Log Message:
-----------
Integrate `check_acceleration()` in `us_fematch.cpp`
Replaced manual acceleration validation with `US_AstfemMath::check_acceleration()`. Improved error handling and message box logic to provide better user feedback for scan data issues.
Commit: 6147e952e75e949c7809a98a21beb2107f87e395
https://github.com/ehb54/ultrascan3/commit/6147e952e75e949c7809a98a21beb2107f87e395
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-09-18 (Thu, 18 Sep 2025)
Changed paths:
M utils/us_astfem_math.h
Log Message:
-----------
Clarify `check_acceleration()` documentation for return format and behavior
Commit: d976a8685de0adc6d272b35cec81016a34e4a38e
https://github.com/ehb54/ultrascan3/commit/d976a8685de0adc6d272b35cec81016a34e4a38e
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-09-18 (Thu, 18 Sep 2025)
Changed paths:
M utils/us_astfem_math.cpp
Log Message:
-----------
Refactor `check_acceleration()` logic for improved readability and robustness
Simplified variable naming, added guards for edge cases, and clarified acceleration rate and time checks. Enhanced error messages to provide more detailed user feedback.
Commit: 6c6ba45b05dacb1c10cf803c959c2b9b4bdbe14c
https://github.com/ehb54/ultrascan3/commit/6c6ba45b05dacb1c10cf803c959c2b9b4bdbe14c
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-09-18 (Thu, 18 Sep 2025)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
Log Message:
-----------
Fix incorrect dereference of `edata` in `check_acceleration()` call
Commit: 103683b0b42e6d3ee23a86bb3749b3cc0aa08e11
https://github.com/ehb54/ultrascan3/commit/103683b0b42e6d3ee23a86bb3749b3cc0aa08e11
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-09-18 (Thu, 18 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
Fix incorrect dereference of `edata` in `check_acceleration()` call within `us_reporter_gmp.cpp`
Commit: 347ef44a538b0dfd5dd64c49aa7d9baecf6f1c03
https://github.com/ehb54/ultrascan3/commit/347ef44a538b0dfd5dd64c49aa7d9baecf6f1c03
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-09-18 (Thu, 18 Sep 2025)
Changed paths:
M doc/manual/advanced_config.body
Log Message:
-----------
Merge pull request #263 from ehb54/lukas/debug_text_docs
Document advanced settings debug text values/flags
Commit: 9d51aa93fbdb6f1a84076e3ddd128210f701d29d
https://github.com/ehb54/ultrascan3/commit/9d51aa93fbdb6f1a84076e3ddd128210f701d29d
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-09-19 (Fri, 19 Sep 2025)
Changed paths:
M gui/us_analysis_base2.cpp
Log Message:
-----------
Refactor speed profile and time state handling in `us_analysis_base2.cpp`
Refactored speed profile processing to improve clarity and maintainability. Added enhanced logic to handle time state files and initialization of simulation parameters. Simplified acceleration checks using `US_AstfemMath::check_acceleration()`.
Commit: 1f7336dfecb15d81c71c88e6922196f0137c6431
https://github.com/ehb54/ultrascan3/commit/1f7336dfecb15d81c71c88e6922196f0137c6431
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-09-19 (Fri, 19 Sep 2025)
Changed paths:
M utils/us_astfem_math.cpp
Log Message:
-----------
Adjust `kT1Factor` initialization and format specifiers in error messages
Revised `kT1Factor` to use explicit calculation for enhanced clarity. Updated float formatting in error messages from 'g' to 'f' for consistent precision in user feedback.
Commit: b29fc424db0d4aa7e5e60d830be2fbadb73666e1
https://github.com/ehb54/ultrascan3/commit/b29fc424db0d4aa7e5e60d830be2fbadb73666e1
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-09-19 (Fri, 19 Sep 2025)
Changed paths:
M programs/us_2dsa/us_2dsa.cpp
Log Message:
-----------
Remove manual `check_acceleration()` validation in `us_2dsa.cpp`
Eliminated redundant acceleration validation logic and message box handling. Streamlined by removing unused `US_AstfemMath::check_acceleration()` integration.
Commit: 626668c35b1cdd774c6ba744a7cd473feb548602
https://github.com/ehb54/ultrascan3/commit/626668c35b1cdd774c6ba744a7cd473feb548602
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-09-19 (Fri, 19 Sep 2025)
Changed paths:
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
Simplify `check_results` bounds checks in message box handling across programs
Commit: b21a559ee9e33fed395a785dbaa8f14fe58e9831
https://github.com/ehb54/ultrascan3/commit/b21a559ee9e33fed395a785dbaa8f14fe58e9831
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-09-19 (Fri, 19 Sep 2025)
Changed paths:
M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
Log Message:
-----------
Remove unused `check_acceleration` logic and disable `update(0)` call in `us_vhw_enhanced.cpp` to prevent unnecessary update cycle
Commit: a4fcd0c5999879b9af70342cbf2a4d40b9d2b803
https://github.com/ehb54/ultrascan3/commit/a4fcd0c5999879b9af70342cbf2a4d40b9d2b803
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-21 (Sun, 21 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
M gui/us_scan_excl_gui.h
M programs/us_analysis_profile/us_analysis_profile.cpp
M utils/us_ana_profile.cpp
M utils/us_ana_profile.h
Log Message:
-----------
GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: e49834c3a05a6ffbc730f24be564d3c319a06d2a
https://github.com/ehb54/ultrascan3/commit/e49834c3a05a6ffbc730f24be564d3c319a06d2a
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M utils/us_astfem_math.cpp
M utils/us_astfem_math.h
Log Message:
-----------
Add `calc_omega2t` functionality to `US_AstfemMath` for omega2t calculations
Introduced a new method `calc_omega2t` in `US_AstfemMath` to calculate omega2t values based on speed profiles, acceleration rates, and time parameters. Enhanced flexibility for processing speed step data.
Commit: 046484c8433d54042b223de7aebd2b793424b6a9
https://github.com/ehb54/ultrascan3/commit/046484c8433d54042b223de7aebd2b793424b6a9
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
Log Message:
-----------
Refactor speed step simulation logic in `us_astfem_sim.cpp`
Streamlined speed profile processing by removing redundant legacy logic and incorporating `calc_omega2t` for precise omega2t and time grid calculations. Enhanced clarity and maintainability of simulation loop.
Commit: 1246e6e3724e8a382585cc65e0208d3008bfbeeb
https://github.com/ehb54/ultrascan3/commit/1246e6e3724e8a382585cc65e0208d3008bfbeeb
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
Log Message:
-----------
[1a]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 5e6c7f858d8e6163099c500c970c02e54801243b
https://github.com/ehb54/ultrascan3/commit/5e6c7f858d8e6163099c500c970c02e54801243b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[2]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 5c98f81ac04ec7e465bdc36d6c858c27e3f146a1
https://github.com/ehb54/ultrascan3/commit/5c98f81ac04ec7e465bdc36d6c858c27e3f146a1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[3]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 5edb9ce91335769271fb5f593482a97dc4233059
https://github.com/ehb54/ultrascan3/commit/5edb9ce91335769271fb5f593482a97dc4233059
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[4]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 9aff495b37873080961f8c231a3ce673377f80d3
https://github.com/ehb54/ultrascan3/commit/9aff495b37873080961f8c231a3ce673377f80d3
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[5]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 1351f83ecb06b104ec53c3eac4dfa8e1deb9e008
https://github.com/ehb54/ultrascan3/commit/1351f83ecb06b104ec53c3eac4dfa8e1deb9e008
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[5a]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 321a8cba345ec3c3f2187e0ba10f28376fd49a3e
https://github.com/ehb54/ultrascan3/commit/321a8cba345ec3c3f2187e0ba10f28376fd49a3e
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit_main.cpp
Log Message:
-----------
[5b-TEST]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 373ac0ac501856ea0df8f4f579f953d89ec810b0
https://github.com/ehb54/ultrascan3/commit/373ac0ac501856ea0df8f4f579f953d89ec810b0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[6b-TEST]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: ea3905ba9097c5eed14e034d6656fd0c84dff988
https://github.com/ehb54/ultrascan3/commit/ea3905ba9097c5eed14e034d6656fd0c84dff988
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit_main.cpp
Log Message:
-----------
[6b-TEST- restore]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: ed8dbfb27ca0afd51e92c0717d6e05536217b8b4
https://github.com/ehb54/ultrascan3/commit/ed8dbfb27ca0afd51e92c0717d6e05536217b8b4
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[7-TEST- restore]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: df769b270aea86fedc2fb0da2875e71741354606
https://github.com/ehb54/ultrascan3/commit/df769b270aea86fedc2fb0da2875e71741354606
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-09-22 (Mon, 22 Sep 2025)
Changed paths:
M gui/us_analysis_base2.cpp
M programs/us_2dsa/us_2dsa.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
M utils/us_astfem_math.cpp
M utils/us_astfem_math.h
Log Message:
-----------
Merge pull request #262 from ehb54/lukas/bad-timestate
Bad timestate warnings
Commit: 021924be498aba94508063128ff7d169d1d6c80c
https://github.com/ehb54/ultrascan3/commit/021924be498aba94508063128ff7d169d1d6c80c
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-09-23 (Tue, 23 Sep 2025)
Changed paths:
M gui/us_model_loader.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_fematch/us_resplot_fem.cpp
M programs/us_fit_meniscus/us_fit_meniscus.cpp
M programs/us_fit_meniscus/us_fit_meniscus_main.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M utils/us_ana_profile.cpp
M utils/us_ana_profile.h
Log Message:
-----------
Merge pull request #261 from ehb54/alexey-dev-issue553
Alexey dev issue553: GMP-Custom grid: pass also CG-modelID throught the framework
Commit: 905f41462ec9dab9667e915d639af2970e21a7a4
https://github.com/ehb54/ultrascan3/commit/905f41462ec9dab9667e915d639af2970e21a7a4
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
Log Message:
-----------
GMP | 1. EXP.: AProfile && 4. EDIT -- [proper settings of min/max for scan_beg|nth|end for different optics systems] init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 671b8e4d0e4951014a52280942d6a6c9712f14fa
https://github.com/ehb54/ultrascan3/commit/671b8e4d0e4951014a52280942d6a6c9712f14fa
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit_main.cpp
Log Message:
-----------
GMP | 1. EXP.: AProfile && 4. EDIT -- [UNIT TEST for multi-channel run] init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: d584fa48438a0f9d744b750a6abe23533cc48b52
https://github.com/ehb54/ultrascan3/commit/d584fa48438a0f9d744b750a6abe23533cc48b52
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit_main.cpp
Log Message:
-----------
GMP | 1. EXP.: AProfile && 4. EDIT -- [RESTORE--UNIT TEST for multi-channel run] init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 84f86b86f77bbcd33e113217d09cbda59701b58b
https://github.com/ehb54/ultrascan3/commit/84f86b86f77bbcd33e113217d09cbda59701b58b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[DEBUGS]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 8ecca10f20a347fd906905b16f8e85ef5afff22a
https://github.com/ehb54/ultrascan3/commit/8ecca10f20a347fd906905b16f8e85ef5afff22a
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[1 DEBUGS]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: fe9b9031b3af683efa02792cf18ca46a51d376d8
https://github.com/ehb54/ultrascan3/commit/fe9b9031b3af683efa02792cf18ca46a51d376d8
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[2 DEBUGS]GMP | 1. EXP.: AProfile && 4. EDIT -- init. steps and tests for configuring scans exclusion (every nth to be inscluded), saving && passing for downstream analysis and eporting...
Commit: 4c16cc30bec6d2d9ea234a0ad826339c18f1dc27
https://github.com/ehb54/ultrascan3/commit/4c16cc30bec6d2d9ea234a0ad826339c18f1dc27
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
GMP | 1. EXP.: AProfile && 4. EDIT -- treat scan exclusion differently for ABDE vs. VELOCITY types (ABDE - usually only last scan remains for each triple, ensured manually; VEL. - based on AProfile's settings beg|nth|end)...
Commit: dd3e9be9669f28156c33235c7e73db3040c614a5
https://github.com/ehb54/ultrascan3/commit/dd3e9be9669f28156c33235c7e73db3040c614a5
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M CMakeLists.txt
Log Message:
-----------
Update CMakeLists.txt
Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Commit: 93c11d987df52db6a1d9484f4f49a7acb54bd4dc
https://github.com/ehb54/ultrascan3/commit/93c11d987df52db6a1d9484f4f49a7acb54bd4dc
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M CMakeLists.txt
Log Message:
-----------
Update CMakeLists.txt
Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Commit: ea99232fad84d9c9e2e785ee18794694bb22b883
https://github.com/ehb54/ultrascan3/commit/ea99232fad84d9c9e2e785ee18794694bb22b883
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M utils/CMakeLists.txt
Log Message:
-----------
Update utils/CMakeLists.txt
Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Commit: a1344544e53b2158a855ac3ddb3296bbb15d21e0
https://github.com/ehb54/ultrascan3/commit/a1344544e53b2158a855ac3ddb3296bbb15d21e0
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M gui/CMakeLists.txt
Log Message:
-----------
Update gui/CMakeLists.txt
Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Commit: 6115f78b236f317ecc7ce852c9541d8ac10084e4
https://github.com/ehb54/ultrascan3/commit/6115f78b236f317ecc7ce852c9541d8ac10084e4
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-09-24 (Wed, 24 Sep 2025)
Changed paths:
M test/utils/CMakeLists.txt
Log Message:
-----------
Update test/utils/CMakeLists.txt
Co-authored-by: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Commit: b1ff389cba607cd5f34556fb6945f050ad099ff8
https://github.com/ehb54/ultrascan3/commit/b1ff389cba607cd5f34556fb6945f050ad099ff8
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-25 (Thu, 25 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...
Commit: b557af349d02a148cef58c38976319f129cf4afa
https://github.com/ehb54/ultrascan3/commit/b557af349d02a148cef58c38976319f129cf4afa
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-25 (Thu, 25 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
[1]GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...
Commit: 57f3b61a10ffe0edcfdee555dbf12a7a6d15dc11
https://github.com/ehb54/ultrascan3/commit/57f3b61a10ffe0edcfdee555dbf12a7a6d15dc11
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-25 (Thu, 25 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[1]GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...
Commit: 825febd6fda9e31b55b9c0e13a0f2af701b3c6e0
https://github.com/ehb54/ultrascan3/commit/825febd6fda9e31b55b9c0e13a0f2af701b3c6e0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-25 (Thu, 25 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[3]GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...
Commit: 4f9217705b688c38c3e420a609c2692c23a7e160
https://github.com/ehb54/ultrascan3/commit/4f9217705b688c38c3e420a609c2692c23a7e160
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-25 (Thu, 25 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[4]GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...
Commit: f8379662ac83a104ca49b29cc3b5a7f830944d05
https://github.com/ehb54/ultrascan3/commit/f8379662ac83a104ca49b29cc3b5a7f830944d05
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-25 (Thu, 25 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[5]GMP | 6. REPORT -- display scan exclusion settings beg|nth|end|remaining in Scan section...
Commit: e87ab944bf93815dda5842e3dadee3249c11a52c
https://github.com/ehb54/ultrascan3/commit/e87ab944bf93815dda5842e3dadee3249c11a52c
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-25 (Thu, 25 Sep 2025)
Changed paths:
M programs/CMakeLists.txt
M test-docker.sh
M test/utils/CMakeLists.txt
M test/utils/test_us_vector.cpp
Log Message:
-----------
fix: cmake collision during build
Commit: 4a401e5be566119b5510674930f3b4365211a052
https://github.com/ehb54/ultrascan3/commit/4a401e5be566119b5510674930f3b4365211a052
Author: aaron <aaron at aucsolutions.com>
Date: 2025-09-25 (Thu, 25 Sep 2025)
Changed paths:
M programs/CMakeLists.txt
Log Message:
-----------
fix: add QWT to us_program_common
Commit: 036113902d7405af0d641ad3afb98b2010cef02f
https://github.com/ehb54/ultrascan3/commit/036113902d7405af0d641ad3afb98b2010cef02f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-26 (Fri, 26 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit_main.cpp
Log Message:
-----------
[unit test for multi-channel case] GMP | 4. EDIT -- treat scan exclusion differently for ABDE vs. VELOCITY types (ABDE - usually only last scan remains for each triple, ensured manually; VEL. - based on AProfile's settings beg|nth|end)...
Commit: 2e456f0922765ab66ffb5844fc6ef570a37ce431
https://github.com/ehb54/ultrascan3/commit/2e456f0922765ab66ffb5844fc6ef570a37ce431
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-09-26 (Fri, 26 Sep 2025)
Changed paths:
A admin/pam/pam_no_ad/Makefile
A admin/pam/pam_no_ad/README.md
A admin/pam/pam_no_ad/files/mariadb
A admin/pam/pam_no_ad/files/php
A admin/pam/pam_no_ad/files/sssd.conf
A admin/pam/pam_no_ad/files/system-auth-nosss
A admin/pam/pam_no_ad/pam_auth_pamtester.php
A admin/pam/pam_no_ad/pam_auth_test.php
Log Message:
-----------
Merge pull request #225 from ehb54/ehb54-issue-496
PAM for linux password for php
Commit: 0fa81d8ac6c3fc80cbfb121038e9a6a0cde634bf
https://github.com/ehb54/ultrascan3/commit/0fa81d8ac6c3fc80cbfb121038e9a6a0cde634bf
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-26 (Fri, 26 Sep 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit_main.cpp
Log Message:
-----------
[REstore form -- unit test for multi-channel case] GMP | 4. EDIT -- treat scan exclusion differently for ABDE vs. VELOCITY types (ABDE - usually only last scan remains for each triple, ensured manually; VEL. - based on AProfile's settings beg|nth|end)...
Commit: 154500215bfe391bf9dd7fda43456fe170c3c834
https://github.com/ehb54/ultrascan3/commit/154500215bfe391bf9dd7fda43456fe170c3c834
Author: saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-09-26 (Fri, 26 Sep 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: update the program GUI to get the cusotm grid from the users
Commit: 42b30b23222d6e9b070861a382ebe34ad77611ab
https://github.com/ehb54/ultrascan3/commit/42b30b23222d6e9b070861a382ebe34ad77611ab
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-26 (Fri, 26 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
GMP | 6. REPORT -- do not display scan exclusion settings Scan section if optics type not used...
Commit: 9f8fa54c2859fc4a8c4f996ef37443963f0e4ab2
https://github.com/ehb54/ultrascan3/commit/9f8fa54c2859fc4a8c4f996ef37443963f0e4ab2
Author: saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-09-26 (Fri, 26 Sep 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
us_grid_editor: add function to parse a grid file
Commit: f6b215b4f73633db8bee542cefd88da89761620b
https://github.com/ehb54/ultrascan3/commit/f6b215b4f73633db8bee542cefd88da89761620b
Author: saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-09-26 (Fri, 26 Sep 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
Log Message:
-----------
us_grid_editor: save the user grid model locally and on DB
Commit: 4ec94c4a344d53369ca022d39c166df3b0859490
https://github.com/ehb54/ultrascan3/commit/4ec94c4a344d53369ca022d39c166df3b0859490
Author: saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-09-27 (Sat, 27 Sep 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
fixed the issue with resetting to the default after pasrsing the CSV file. Refine the functions to reload the model from DB and local drive
Commit: f286c4ffff8050ccb898b5446f3915031c6b7585
https://github.com/ehb54/ultrascan3/commit/f286c4ffff8050ccb898b5446f3915031c6b7585
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-09-27 (Sat, 27 Sep 2025)
Changed paths:
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
Log Message:
-----------
Merge pull request #264 from samo38/issue_563
Issue 563: Custom Grid Program
Commit: e3282fcfa778c046776d3abf2a718a9617230b4d
https://github.com/ehb54/ultrascan3/commit/e3282fcfa778c046776d3abf2a718a9617230b4d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-29 (Mon, 29 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
GMP | 6. REPORT -- do not specify details on Scan exlusions of there were no any...
Commit: 8a112ba9e5ae7859d58f117c486f2e52cbba2899
https://github.com/ehb54/ultrascan3/commit/8a112ba9e5ae7859d58f117c486f2e52cbba2899
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-29 (Mon, 29 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
Log Message:
-----------
[1]GMP | 6. REPORT -- do not specify details on Scan exlusions of there were no any...
Commit: d1287da6bdde6dcb79acc019617ea24b5d93d410
https://github.com/ehb54/ultrascan3/commit/d1287da6bdde6dcb79acc019617ea24b5d93d410
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-29 (Mon, 29 Sep 2025)
Changed paths:
A admin/pam/pam_no_ad/Makefile
A admin/pam/pam_no_ad/README.md
A admin/pam/pam_no_ad/files/mariadb
A admin/pam/pam_no_ad/files/php
A admin/pam/pam_no_ad/files/sssd.conf
A admin/pam/pam_no_ad/files/system-auth-nosss
A admin/pam/pam_no_ad/pam_auth_pamtester.php
A admin/pam/pam_no_ad/pam_auth_test.php
M gui/us_analysis_base2.cpp
M gui/us_model_loader.cpp
M programs/us_2dsa/us_2dsa.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_fematch/us_resplot_fem.cpp
M programs/us_fit_meniscus/us_fit_meniscus.cpp
M programs/us_fit_meniscus/us_fit_meniscus_main.cpp
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
M utils/us_ana_profile.cpp
M utils/us_ana_profile.h
M utils/us_astfem_math.cpp
M utils/us_astfem_math.h
Log Message:
-----------
Merge pull request #265 from ehb54/master
add master
Commit: 8dff3550c25c2827799de8e3f245f1f34a9044ab
https://github.com/ehb54/ultrascan3/commit/8dff3550c25c2827799de8e3f245f1f34a9044ab
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-29 (Mon, 29 Sep 2025)
Changed paths:
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
Log Message:
-----------
[2]GMP | 6. REPORT -- do not specify details on Scan exlusions of there were no any...
Commit: d927f1c7acffd7436189c83726111d960cbd1e2d
https://github.com/ehb54/ultrascan3/commit/d927f1c7acffd7436189c83726111d960cbd1e2d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-30 (Tue, 30 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
Log Message:
-----------
GMP | 1. EXP.:APorile:ScanExcls. -- do not allow remainig scans to be less than 3 per channel;restore otherwise...
Commit: 4c3a97f136b46591a7381b85fb726ea2fb87f7f2
https://github.com/ehb54/ultrascan3/commit/4c3a97f136b46591a7381b85fb726ea2fb87f7f2
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-30 (Tue, 30 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
M gui/us_scan_excl_gui.h
Log Message:
-----------
GMP | 1. EXP.:APorile:ScanExcls. -- [Modified logic for--] do not allow remainig scans to be less than 3 per channel;restore otherwise...
Commit: 7c65e196caeaf47f46d74fe305d0dec5c3f6f4e1
https://github.com/ehb54/ultrascan3/commit/7c65e196caeaf47f46d74fe305d0dec5c3f6f4e1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-30 (Tue, 30 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
Log Message:
-----------
[1]GMP | 1. EXP.:APorile:ScanExcls. -- [Modified logic for--] do not allow remainig scans to be less than 3 per channel;restore otherwise...
Commit: 07f7d5c89032aa8dac1c13fe611e51d8e076cfde
https://github.com/ehb54/ultrascan3/commit/07f7d5c89032aa8dac1c13fe611e51d8e076cfde
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-30 (Tue, 30 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
Log Message:
-----------
GMP | 1. EXP.:APorile:ScanExcls. -- backward compatibility with older protocols with no nth scan excl. settings...
Commit: 232008ddbb42fa37d28890542961579241726f13
https://github.com/ehb54/ultrascan3/commit/232008ddbb42fa37d28890542961579241726f13
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-09-30 (Tue, 30 Sep 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
Log Message:
-----------
[1]GMP | 1. EXP.:APorile:ScanExcls. -- backward compatibility with older protocols with no nth scan excl. settings...
Commit: 3eb9ae51c6a5f7fc763508aa6e322281d3540f3b
https://github.com/ehb54/ultrascan3/commit/3eb9ae51c6a5f7fc763508aa6e322281d3540f3b
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-02 (Thu, 02 Oct 2025)
Changed paths:
M test/utils/CMakeLists.txt
Log Message:
-----------
fix: duplicate include removed
Commit: 003fcead31be5da3e4a5744bd8b5a9a3adb9686d
https://github.com/ehb54/ultrascan3/commit/003fcead31be5da3e4a5744bd8b5a9a3adb9686d
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-10-02 (Thu, 02 Oct 2025)
Changed paths:
M gui/us_scan_excl_gui.cpp
M gui/us_scan_excl_gui.h
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M utils/us_ana_profile.cpp
M utils/us_ana_profile.h
Log Message:
-----------
Merge pull request #267 from ehb54/alexey-dev-issue556
Alexey dev issue556: Scan Exclusion Profile Editor for AProfile in GMP #556
Commit: 9b2e06a5e4a371044a913065222c7d91603e0085
https://github.com/ehb54/ultrascan3/commit/9b2e06a5e4a371044a913065222c7d91603e0085
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-02 (Thu, 02 Oct 2025)
Changed paths:
M programs/us_integral/us_integral.cpp
Log Message:
-----------
US_intargal -- avoid loading editProfiles...
Commit: abfa96706807a26b5b0642ed078a97acf01a3e18
https://github.com/ehb54/ultrascan3/commit/abfa96706807a26b5b0642ed078a97acf01a3e18
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-02 (Thu, 02 Oct 2025)
Changed paths:
M programs/us_integral/us_integral.cpp
Log Message:
-----------
US_intergal -- restore editProfiles read; add debugs...
Commit: d712bbbb0ceb306e036f428d4245c0e3b87c097b
https://github.com/ehb54/ultrascan3/commit/d712bbbb0ceb306e036f428d4245c0e3b87c097b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-02 (Thu, 02 Oct 2025)
Changed paths:
M programs/us_integral/us_integral.cpp
Log Message:
-----------
[1]US_intergal -- restore editProfiles read; add debugs...
Commit: 088595bbbb4e35e890cb8d2bf308945e0333f3f1
https://github.com/ehb54/ultrascan3/commit/088595bbbb4e35e890cb8d2bf308945e0333f3f1
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-02 (Thu, 02 Oct 2025)
Changed paths:
M programs/us_integral/us_integral.cpp
Log Message:
-----------
[2]US_intergal -- restore editProfiles read; add debugs...
Commit: 15343601bc0774d196184c33adbddefab8430a11
https://github.com/ehb54/ultrascan3/commit/15343601bc0774d196184c33adbddefab8430a11
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-02 (Thu, 02 Oct 2025)
Changed paths:
M programs/us_integral/us_integral.cpp
Log Message:
-----------
[3]US_intergal -- create curves' labels from the model's desc...
Commit: d62e7b57ef0ea16676a289087f4e4ba7a92ef3f8
https://github.com/ehb54/ultrascan3/commit/d62e7b57ef0ea16676a289087f4e4ba7a92ef3f8
Author: HabGab <gabirh at myumanitoba.ca>
Date: 2025-10-03 (Fri, 03 Oct 2025)
Changed paths:
M programs/us_integral/us_integral.cpp
Log Message:
-----------
Merge pull request #268 from ehb54/alexey-dev-issue562
Alexey dev issue562: Enable plotting CG-SG integral distr.
Commit: 399d845e5667346225803b9ac45b753c7676e39d
https://github.com/ehb54/ultrascan3/commit/399d845e5667346225803b9ac45b753c7676e39d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-06 (Mon, 06 Oct 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M utils/us_run_protocol.h
Log Message:
-----------
GMP | R&D : dataDisk -- differentiate between RI-uploaded data to be intensity or pseudo-absorbance; act accordingly in 3. IMPORT; report in REPORT; ...
Commit: f924d79f3ecf67db15ced074ac2b50a4cafc9c72
https://github.com/ehb54/ultrascan3/commit/f924d79f3ecf67db15ced074ac2b50a4cafc9c72
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-06 (Mon, 06 Oct 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
Log Message:
-----------
[1] GMP | R&D : dataDisk -- differentiate between RI-uploaded data to be intensity or pseudo-absorbance; act accordingly in 3. IMPORT; report in REPORT; ...
Commit: a95afc6b2d4b4b118c7e84a6e1258fbf85076bf0
https://github.com/ehb54/ultrascan3/commit/a95afc6b2d4b4b118c7e84a6e1258fbf85076bf0
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-06 (Mon, 06 Oct 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[2] GMP | R&D : dataDisk -- differentiate between RI-uploaded data to be intensity or pseudo-absorbance; act accordingly in 3. IMPORT; report in REPORT; ...
Commit: 8f9f1257b799c491fa5629c912071eabb435388f
https://github.com/ehb54/ultrascan3/commit/8f9f1257b799c491fa5629c912071eabb435388f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-06 (Mon, 06 Oct 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[3] GMP | R&D : dataDisk -- differentiate between RI-uploaded data to be intensity or pseudo-absorbance; act accordingly in 3. IMPORT; report in REPORT; ...
Commit: c3a261985e7e3979e7a9a11fcad5c851e739f41b
https://github.com/ehb54/ultrascan3/commit/c3a261985e7e3979e7a9a11fcad5c851e739f41b
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-06 (Mon, 06 Oct 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
Us_Edit -- address non-hidden widgets in different constructors && scenarios ...
Commit: 3ad35587a1da03cc9926344ac40bb3d364a32d24
https://github.com/ehb54/ultrascan3/commit/3ad35587a1da03cc9926344ac40bb3d364a32d24
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-06 (Mon, 06 Oct 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[1]Us_Edit -- address non-hidden widgets in different constructors && scenarios ...
Commit: d6a4a469c86320252916565b3bd860c07cab4b1f
https://github.com/ehb54/ultrascan3/commit/d6a4a469c86320252916565b3bd860c07cab4b1f
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-06 (Mon, 06 Oct 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[2]Us_Edit -- address non-hidden widgets in different constructors && scenarios ...
Commit: d3528cb233647917b4f76c9423f9deae1983f2bd
https://github.com/ehb54/ultrascan3/commit/d3528cb233647917b4f76c9423f9deae1983f2bd
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-06 (Mon, 06 Oct 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[3]Us_Edit -- address non-hidden widgets in different constructors && scenarios ...
Commit: 8b4d2dc93db3c9ce00f4cfcebac25a50f25ce7f2
https://github.com/ehb54/ultrascan3/commit/8b4d2dc93db3c9ce00f4cfcebac25a50f25ce7f2
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-07 (Tue, 07 Oct 2025)
Changed paths:
M CMakeLists.txt
M programs/CMakeLists.txt
M programs/us_autoflow_analysis/CMakeLists.txt
M programs/us_fematch/CMakeLists.txt
M programs/us_manage_data/us_manage_data.cpp
M programs/us_ramp/us_ramp_gui.cpp
M qwtplot3d/CMakeLists.txt
M test/utils/test_us_astfem_math.cpp
R test/utils/test_us_astfem_rsa.cpp
Log Message:
-----------
Consolidated commit after cleanup
Commit: 934f494e4683d95677c5a7051705426df529cf13
https://github.com/ehb54/ultrascan3/commit/934f494e4683d95677c5a7051705426df529cf13
Author: aaron <aaron at aucsolutions.com>
Date: 2025-10-08 (Wed, 08 Oct 2025)
Changed paths:
A admin/pam/pam_no_ad/Makefile
A admin/pam/pam_no_ad/README.md
A admin/pam/pam_no_ad/files/mariadb
A admin/pam/pam_no_ad/files/php
A admin/pam/pam_no_ad/files/sssd.conf
A admin/pam/pam_no_ad/files/system-auth-nosss
A admin/pam/pam_no_ad/pam_auth_pamtester.php
A admin/pam/pam_no_ad/pam_auth_test.php
M doc/manual/advanced_config.body
M gui/us_analysis_base2.cpp
M gui/us_model_loader.cpp
M gui/us_scan_excl_gui.cpp
M gui/us_scan_excl_gui.h
M programs/us_2dsa/us_2dsa.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
M programs/us_convert/us_convert_gui.cpp
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_fematch/us_fematch.cpp
M programs/us_fematch/us_resplot_fem.cpp
M programs/us_fit_meniscus/us_fit_meniscus.cpp
M programs/us_fit_meniscus/us_fit_meniscus_main.cpp
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M programs/us_integral/us_integral.cpp
M programs/us_mpi_analysis/us_mpi_analysis.cpp
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
M utils/us_ana_profile.cpp
M utils/us_ana_profile.h
M utils/us_astfem_math.cpp
M utils/us_astfem_math.h
Log Message:
-----------
Merge remote-tracking branch 'origin/master' into aaron-dev-test-utils
Commit: 4e54cb0bd0e5eda0aebea648780b89b67b47d482
https://github.com/ehb54/ultrascan3/commit/4e54cb0bd0e5eda0aebea648780b89b67b47d482
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-10-08 (Wed, 08 Oct 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
A .github/workflows/static-analysis.yml
A .github/workflows/unit-tests.yml
M .gitignore
M CMakeLists.txt
A admin/cmake/FindQwt.cmake
A admin/cmake/us_version.h.in
A admin/test/docker/Dockerfile
R doc/manual/README
A doc/manual/README.md
A gui/CMakeLists.txt
M gui/us_abstractrotor_gui.cpp
M gui/us_buffer_gui.cpp
M gui/us_data_loader.cpp
M gui/us_failed_gmp_run_gui.cpp
M gui/us_load_auc.cpp
M gui/us_loadable_noise.cpp
R gui/us_model_editor.cpp
R gui/us_model_editor.h
M gui/us_model_gui.cpp
M gui/us_model_gui.h
M gui/us_model_loader.cpp
M gui/us_model_loader.h
M gui/us_noise_loader.cpp
M gui/us_noise_loader.h
M gui/us_project_gui.cpp
M gui/us_rotor_gui.cpp
M gui/us_solution_gui.cpp
A programs/CMakeLists.txt
M programs/us/us.cpp
M programs/us/us_win_data.cpp
M programs/us_2dsa/us_2dsa.cpp
M programs/us_astfem_sim/us_clipdata.cpp
A programs/us_autoflow_analysis/CMakeLists.txt
A programs/us_com_project/CMakeLists.txt
A programs/us_com_project_academic/CMakeLists.txt
M programs/us_config/us_database.cpp
M programs/us_config/us_xpnhost_db.cpp
M programs/us_config/us_xpnhost_db.h
M programs/us_convert/us_get_run.cpp
M programs/us_convert/us_select_triples.h
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_ddist_combine.h
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
A programs/us_experiment/CMakeLists.txt
M programs/us_experiment/us_experiment_gui_optima.cpp
A programs/us_fematch/CMakeLists.txt
M programs/us_fematch/us_fematch.cpp
A programs/us_fit_meniscus/CMakeLists.txt
M programs/us_ga_init/us_solutedata.cpp
M programs/us_integral/us_integral.cpp
M programs/us_manage_data/us_manage_data.cpp
A programs/us_mwl_species_fit/CMakeLists.txt
M programs/us_mwlr_viewer/us_mwl_run.cpp
M programs/us_pcsa/us_adv_analysis_pc.cpp
M programs/us_pcsa/us_analysis_control_pc.cpp
M programs/us_pcsa/us_mrecs_loader.cpp
M programs/us_pcsa/us_mrecs_loader.h
M programs/us_pcsa/us_pcsa.cpp
M programs/us_pcsa/us_pcsa_process.cpp
M programs/us_pcsa/us_rpscan.cpp
A programs/us_protocol_dev/CMakeLists.txt
A programs/us_query_rmsd/CMakeLists.txt
M programs/us_ramp/us_experiment_gui_ra.cpp
M programs/us_ramp/us_experiment_ra.cpp
M programs/us_ramp/us_experiment_ra.h
M programs/us_ramp/us_get_dbrun_ra.cpp
M programs/us_ramp/us_ramp_gui.cpp
M programs/us_reporter/us_reporter.cpp
A programs/us_reporter_gmp/CMakeLists.txt
M programs/us_xpn_viewer/us_xpn_run_auc.cpp
M programs/us_xpn_viewer/us_xpn_run_raw.cpp
A qwtplot3d/CMakeLists.txt
A test-docker.sh
A test/README
A test/common/qt_test_base.cpp
A test/common/qt_test_base.h
M test/utils/CMakeLists.txt
A test/utils/mock/mock_us_db2.h
A test/utils/test_mock_us_db2.cpp
A test/utils/test_us_ana_profile.cpp
A test/utils/test_us_analyte.cpp
A test/utils/test_us_astfem_math.cpp
A test/utils/test_us_buffer.cpp
A test/utils/test_us_crc.cpp
A test/utils/test_us_crypto.cpp
A test/utils/test_us_dataIO.cpp
M test/utils/test_us_datafiles.cpp
R test/utils/test_us_datafiles.h
A test/utils/test_us_db2.cpp
A test/utils/test_us_math2.cpp
A test/utils/test_us_matrix.cpp
A test/utils/test_us_memory.cpp
A test/utils/test_us_model.cpp
A test/utils/test_us_project.cpp
A test/utils/test_us_settings.cpp
R test/utils/test_us_simparams.cpp
R test/utils/test_us_simparams.h
A test/utils/test_us_simparms.cpp
A test/utils/test_us_stiffbase.cpp
A test/utils/test_us_time_state.cpp
A test/utils/test_us_timer.cpp
M test/utils/test_us_util.cpp
R test/utils/test_us_util.h
M test/utils/test_us_utils_main.cpp
A test/utils/test_us_vector.cpp
M us_somo/develop/include/us_zeno_cxx.h
M us_somo/develop/include/us_zeno_cxx_nf.h
M utils/CMakeLists.txt
A utils/ius_db2.h
M utils/us_ana_profile.cpp
M utils/us_analyte.cpp
M utils/us_analyte.h
M utils/us_astfem_rsa.cpp
M utils/us_buffer.cpp
M utils/us_buffer.h
M utils/us_cfa_data.cpp
M utils/us_dataIO.cpp
M utils/us_dataIO.h
M utils/us_db2.cpp
M utils/us_db2.h
M utils/us_eprofile.cpp
M utils/us_eprofile.h
M utils/us_hardware.cpp
M utils/us_hardware.h
M utils/us_lamm_astfvm.cpp
M utils/us_model.cpp
M utils/us_model.h
M utils/us_noise.cpp
M utils/us_noise.h
M utils/us_project.cpp
M utils/us_project.h
M utils/us_report.cpp
M utils/us_report.h
M utils/us_rotor.cpp
M utils/us_rotor.h
M utils/us_simparms.cpp
M utils/us_simparms.h
M utils/us_solution.cpp
M utils/us_solution.h
M utils/us_solution_vals.cpp
M utils/us_solution_vals.h
M utils/us_solve_sim.cpp
M utils/us_solve_sim.h
M utils/us_time_state.cpp
M utils/us_time_state.h
Log Message:
-----------
Merge pull request #234 from ehb54/aaron-dev-test-utils
Add: google mock framework, static code analysis
Commit: 6dc67538e4d0efedcf66715d9f44781f3f8e27e4
https://github.com/ehb54/ultrascan3/commit/6dc67538e4d0efedcf66715d9f44781f3f8e27e4
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-08 (Wed, 08 Oct 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
A .github/workflows/static-analysis.yml
A .github/workflows/unit-tests.yml
M .gitignore
M CMakeLists.txt
A admin/cmake/FindQwt.cmake
A admin/cmake/us_version.h.in
A admin/test/docker/Dockerfile
R doc/manual/README
A doc/manual/README.md
A gui/CMakeLists.txt
M gui/us_abstractrotor_gui.cpp
M gui/us_buffer_gui.cpp
M gui/us_data_loader.cpp
M gui/us_failed_gmp_run_gui.cpp
M gui/us_load_auc.cpp
M gui/us_loadable_noise.cpp
R gui/us_model_editor.cpp
R gui/us_model_editor.h
M gui/us_model_gui.cpp
M gui/us_model_gui.h
M gui/us_model_loader.cpp
M gui/us_model_loader.h
M gui/us_noise_loader.cpp
M gui/us_noise_loader.h
M gui/us_project_gui.cpp
M gui/us_rotor_gui.cpp
M gui/us_solution_gui.cpp
A programs/CMakeLists.txt
M programs/us/us.cpp
M programs/us/us_win_data.cpp
M programs/us_2dsa/us_2dsa.cpp
M programs/us_astfem_sim/us_clipdata.cpp
A programs/us_autoflow_analysis/CMakeLists.txt
A programs/us_com_project/CMakeLists.txt
A programs/us_com_project_academic/CMakeLists.txt
M programs/us_config/us_database.cpp
M programs/us_config/us_xpnhost_db.cpp
M programs/us_config/us_xpnhost_db.h
M programs/us_convert/us_get_run.cpp
M programs/us_convert/us_select_triples.h
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_ddist_combine.h
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
A programs/us_experiment/CMakeLists.txt
M programs/us_experiment/us_experiment_gui_optima.cpp
A programs/us_fematch/CMakeLists.txt
M programs/us_fematch/us_fematch.cpp
A programs/us_fit_meniscus/CMakeLists.txt
M programs/us_ga_init/us_solutedata.cpp
M programs/us_integral/us_integral.cpp
M programs/us_manage_data/us_manage_data.cpp
A programs/us_mwl_species_fit/CMakeLists.txt
M programs/us_mwlr_viewer/us_mwl_run.cpp
M programs/us_pcsa/us_adv_analysis_pc.cpp
M programs/us_pcsa/us_analysis_control_pc.cpp
M programs/us_pcsa/us_mrecs_loader.cpp
M programs/us_pcsa/us_mrecs_loader.h
M programs/us_pcsa/us_pcsa.cpp
M programs/us_pcsa/us_pcsa_process.cpp
M programs/us_pcsa/us_rpscan.cpp
A programs/us_protocol_dev/CMakeLists.txt
A programs/us_query_rmsd/CMakeLists.txt
M programs/us_ramp/us_experiment_gui_ra.cpp
M programs/us_ramp/us_experiment_ra.cpp
M programs/us_ramp/us_experiment_ra.h
M programs/us_ramp/us_get_dbrun_ra.cpp
M programs/us_ramp/us_ramp_gui.cpp
M programs/us_reporter/us_reporter.cpp
A programs/us_reporter_gmp/CMakeLists.txt
M programs/us_xpn_viewer/us_xpn_run_auc.cpp
M programs/us_xpn_viewer/us_xpn_run_raw.cpp
A qwtplot3d/CMakeLists.txt
A test-docker.sh
A test/README
A test/common/qt_test_base.cpp
A test/common/qt_test_base.h
M test/utils/CMakeLists.txt
A test/utils/mock/mock_us_db2.h
A test/utils/test_mock_us_db2.cpp
A test/utils/test_us_ana_profile.cpp
A test/utils/test_us_analyte.cpp
A test/utils/test_us_astfem_math.cpp
A test/utils/test_us_buffer.cpp
A test/utils/test_us_crc.cpp
A test/utils/test_us_crypto.cpp
A test/utils/test_us_dataIO.cpp
M test/utils/test_us_datafiles.cpp
R test/utils/test_us_datafiles.h
A test/utils/test_us_db2.cpp
A test/utils/test_us_math2.cpp
A test/utils/test_us_matrix.cpp
A test/utils/test_us_memory.cpp
A test/utils/test_us_model.cpp
A test/utils/test_us_project.cpp
A test/utils/test_us_settings.cpp
R test/utils/test_us_simparams.cpp
R test/utils/test_us_simparams.h
A test/utils/test_us_simparms.cpp
A test/utils/test_us_stiffbase.cpp
A test/utils/test_us_time_state.cpp
A test/utils/test_us_timer.cpp
M test/utils/test_us_util.cpp
R test/utils/test_us_util.h
M test/utils/test_us_utils_main.cpp
A test/utils/test_us_vector.cpp
M us_somo/develop/include/us_zeno_cxx.h
M us_somo/develop/include/us_zeno_cxx_nf.h
M utils/CMakeLists.txt
A utils/ius_db2.h
M utils/us_ana_profile.cpp
M utils/us_analyte.cpp
M utils/us_analyte.h
M utils/us_astfem_rsa.cpp
M utils/us_buffer.cpp
M utils/us_buffer.h
M utils/us_cfa_data.cpp
M utils/us_dataIO.cpp
M utils/us_dataIO.h
M utils/us_db2.cpp
M utils/us_db2.h
M utils/us_eprofile.cpp
M utils/us_eprofile.h
M utils/us_hardware.cpp
M utils/us_hardware.h
M utils/us_lamm_astfvm.cpp
M utils/us_model.cpp
M utils/us_model.h
M utils/us_noise.cpp
M utils/us_noise.h
M utils/us_project.cpp
M utils/us_project.h
M utils/us_report.cpp
M utils/us_report.h
M utils/us_rotor.cpp
M utils/us_rotor.h
M utils/us_simparms.cpp
M utils/us_simparms.h
M utils/us_solution.cpp
M utils/us_solution.h
M utils/us_solution_vals.cpp
M utils/us_solution_vals.h
M utils/us_solve_sim.cpp
M utils/us_solve_sim.h
M utils/us_time_state.cpp
M utils/us_time_state.h
Log Message:
-----------
Merge pull request #269 from ehb54/master
Bring this branch to the latest master state
Commit: af2045563aa019e69852ce42d22235076e6d33f7
https://github.com/ehb54/ultrascan3/commit/af2045563aa019e69852ce42d22235076e6d33f7
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-09 (Thu, 09 Oct 2025)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
Log Message:
-----------
GMP: 1. EXP. -- for dataDisk option, do not block submission due to disconnected Optima; block otherwise...
Commit: 8d1c1b4dcbf1b2c698688d5aad236d07578858d5
https://github.com/ehb54/ultrascan3/commit/8d1c1b4dcbf1b2c698688d5aad236d07578858d5
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-09 (Thu, 09 Oct 2025)
Changed paths:
M programs/us_fit_meniscus/us_fit_meniscus.cpp
Log Message:
-----------
GMP: 5. ANALYSIS: FITMEN -- disable update btn right after it's clicked...
Commit: 34e1993274025890c5cceda224c19973aa5b2ae2
https://github.com/ehb54/ultrascan3/commit/34e1993274025890c5cceda224c19973aa5b2ae2
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-10-10 (Fri, 10 Oct 2025)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
Log Message:
-----------
Merge pull request #271 from ehb54/alexey-dev-issue576
GMP: 1. EXP. -- for dataDisk option, do not block submission due to disconnected Optima; block otherwise..
Commit: bdba96a7dc97bb081790098cfb3d72bc10a32c18
https://github.com/ehb54/ultrascan3/commit/bdba96a7dc97bb081790098cfb3d72bc10a32c18
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-10 (Fri, 10 Oct 2025)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
Log Message:
-----------
Merge pull request #274 from ehb54/master
Bring to the current master state
Commit: 7c722f2fc3f2a82a9d5063fe4aecc128f465873d
https://github.com/ehb54/ultrascan3/commit/7c722f2fc3f2a82a9d5063fe4aecc128f465873d
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-10 (Fri, 10 Oct 2025)
Changed paths:
M programs/us_experiment/us_exp_utils.cpp
Log Message:
-----------
Merge pull request #275 from ehb54/master
Bring to current master state
Commit: 236ab6f7717916a81de574fbe27299f18683a06c
https://github.com/ehb54/ultrascan3/commit/236ab6f7717916a81de574fbe27299f18683a06c
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-10-11 (Sat, 11 Oct 2025)
Changed paths:
M utils/us_buffer.cpp
Log Message:
-----------
Prevent early exit when saving a new buffer to database
Commit: 3edada407972c86d03c8f30822ebf6a3c1166357
https://github.com/ehb54/ultrascan3/commit/3edada407972c86d03c8f30822ebf6a3c1166357
Author: doluk <69309597+doluk at users.noreply.github.com>
Date: 2025-10-13 (Mon, 13 Oct 2025)
Changed paths:
M gui/CMakeLists.txt
Log Message:
-----------
Include *.ui and *.qrc in gui build to ensure all resources and forms are available
Commit: 427e601f770f5eb39efb249bca9eb81b557561ae
https://github.com/ehb54/ultrascan3/commit/427e601f770f5eb39efb249bca9eb81b557561ae
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-10-13 (Mon, 13 Oct 2025)
Changed paths:
M utils/us_buffer.cpp
Log Message:
-----------
Clean up debug statements and enhance comments
Removed commented debug statements and added clarifying comments for variable assignments.
Commit: 0bd193389e5967e65d03d34b4ce6dcf0f3817f84
https://github.com/ehb54/ultrascan3/commit/0bd193389e5967e65d03d34b4ce6dcf0f3817f84
Author: aaron-auc <95181880+aaron-auc at users.noreply.github.com>
Date: 2025-10-13 (Mon, 13 Oct 2025)
Changed paths:
M gui/CMakeLists.txt
Log Message:
-----------
Merge pull request #280 from ehb54/lukas/cmake-gui-resources
Include *.ui and *.qrc in us_gui library
Commit: 72ff576e489d378f03adc4296b68bd001b1c649e
https://github.com/ehb54/ultrascan3/commit/72ff576e489d378f03adc4296b68bd001b1c649e
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-10-13 (Mon, 13 Oct 2025)
Changed paths:
M programs/us_convert/us_convert_gui.cpp
M programs/us_edit/us_edit.cpp
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M utils/us_run_protocol.h
Log Message:
-----------
Merge pull request #273 from ehb54/alexey-dev-issue567
Alexey dev issue567: Deal with dataDisk Pseudoabsorbance type && correct GUI representaitons of US_Edit scenarios
Commit: eb8022621705540d2e5a0010b5141f3bd1620591
https://github.com/ehb54/ultrascan3/commit/eb8022621705540d2e5a0010b5141f3bd1620591
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-10-13 (Mon, 13 Oct 2025)
Changed paths:
M programs/us_fit_meniscus/us_fit_meniscus.cpp
Log Message:
-----------
Merge pull request #272 from ehb54/alexey-dev-issue575
GMP: 5. ANALYSIS: FITMEN -- disable update btn right after it's clicked..
Commit: 18b990073be39e32a749536729cba62d576e6c98
https://github.com/ehb54/ultrascan3/commit/18b990073be39e32a749536729cba62d576e6c98
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-10-13 (Mon, 13 Oct 2025)
Changed paths:
M gui/us_report_gui.cpp
M gui/us_widgets.cpp
M gui/us_widgets_dialog.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_experiment/us_proto_ranges.cpp
Log Message:
-----------
Merge pull request #237 from ehb54/alexey-dev-issue521
Alexey dev issue521: Correct and read-only exp. time in channels reports, qspinboxes instead of qwtcounters to control input
Commit: d131cbbccf4b88f4a39d285fb99a84ccfaacb536
https://github.com/ehb54/ultrascan3/commit/d131cbbccf4b88f4a39d285fb99a84ccfaacb536
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-14 (Tue, 14 Oct 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M utils/us_simparms.cpp
M utils/us_simparms.h
Log Message:
-----------
GMP: 4. EDIT -- add rotor stretch to bottom in edit profiles...
Commit: 567202c3572f02c0b782f92791cac022e863829c
https://github.com/ehb54/ultrascan3/commit/567202c3572f02c0b782f92791cac022e863829c
Author: Lukas Dobler <69309597+doluk at users.noreply.github.com>
Date: 2025-10-14 (Tue, 14 Oct 2025)
Changed paths:
M utils/us_buffer.cpp
Log Message:
-----------
Merge pull request #278 from ehb54/lukas/us_buffer_saveToDB
Prevent early exit when saving a new buffer to database
Commit: 2d1d5599a18b1105dd622fb570a284c2af9b3027
https://github.com/ehb54/ultrascan3/commit/2d1d5599a18b1105dd622fb570a284c2af9b3027
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-10-14 (Tue, 14 Oct 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
Log Message:
-----------
us_astfem_sim: save TI, RI noises in the result directory
Commit: 52692bf1ec74f08f07f036d50913983f0cb4902c
https://github.com/ehb54/ultrascan3/commit/52692bf1ec74f08f07f036d50913983f0cb4902c
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-10-14 (Tue, 14 Oct 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
Log Message:
-----------
us_astfem_sim.cpp: fix writing the RI csv profile for multi-speed experiments
Commit: 2bb6c53d1c011cceb17b9ebabc3e0700fea48879
https://github.com/ehb54/ultrascan3/commit/2bb6c53d1c011cceb17b9ebabc3e0700fea48879
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-14 (Tue, 14 Oct 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[debug version, stops at XML write]GMP: 4. EDIT -- add rotor stretch to bottom in edit profiles...
Commit: 2dfbe74efa5e6ca4ebd7b4acb23c8198c6eea001
https://github.com/ehb54/ultrascan3/commit/2dfbe74efa5e6ca4ebd7b4acb23c8198c6eea001
Author: alexsav815 <alexsav.science at gmail.com>
Date: 2025-10-14 (Tue, 14 Oct 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
Log Message:
-----------
[[1]debug version, stops at XML write]GMP: 4. EDIT -- add rotor stretch to bottom in edit profiles...
Commit: 5d05e1a2439de5fa9adb431619c350ae188fcf31
https://github.com/ehb54/ultrascan3/commit/5d05e1a2439de5fa9adb431619c350ae188fcf31
Author: Saeed <saeed.mortezazadeh25 at gmail.com>
Date: 2025-10-14 (Tue, 14 Oct 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_astfem_sim/us_astfem_sim.h
Log Message:
-----------
us_astfem_sim: save TI,RI noise profiles into the outout directory
Commit: 883d73df2ac05d1717a2f924737d36a6ddda5a49
https://github.com/ehb54/ultrascan3/commit/883d73df2ac05d1717a2f924737d36a6ddda5a49
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-10-14 (Tue, 14 Oct 2025)
Changed paths:
M programs/us_edit/us_edit.cpp
M utils/us_simparms.cpp
M utils/us_simparms.h
Log Message:
-----------
Merge pull request #282 from ehb54/alexey-dev-issue577
GMP: 4. EDIT -- add rotor stretch to bottom in edit profiles...
Commit: 1de51a8c4fb82a5cbb3cf09653f9e235a54c327c
https://github.com/ehb54/ultrascan3/commit/1de51a8c4fb82a5cbb3cf09653f9e235a54c327c
Author: Borries Demeler <7659499+demeler at users.noreply.github.com>
Date: 2025-10-14 (Tue, 14 Oct 2025)
Changed paths:
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_astfem_sim/us_astfem_sim.h
Log Message:
-----------
Merge pull request #281 from samo38/issue_587
us_astfem_sim: save TI, RI noises in the result directory
Commit: ecfbe0af9e3b7e855a5d67f491614c06b26261f1
https://github.com/ehb54/ultrascan3/commit/ecfbe0af9e3b7e855a5d67f491614c06b26261f1
Author: ehb54 <brookes at uthscsa.edu>
Date: 2025-10-15 (Wed, 15 Oct 2025)
Changed paths:
M .github/workflows/codeql-analysis.yml
A .github/workflows/static-analysis.yml
A .github/workflows/unit-tests.yml
M .gitignore
M CMakeLists.txt
A admin/cmake/FindQwt.cmake
A admin/cmake/us_version.h.in
A admin/pam/pam_no_ad/Makefile
A admin/pam/pam_no_ad/README.md
A admin/pam/pam_no_ad/files/mariadb
A admin/pam/pam_no_ad/files/php
A admin/pam/pam_no_ad/files/sssd.conf
A admin/pam/pam_no_ad/files/system-auth-nosss
A admin/pam/pam_no_ad/pam_auth_pamtester.php
A admin/pam/pam_no_ad/pam_auth_test.php
A admin/test/docker/Dockerfile
R doc/manual/README
A doc/manual/README.md
M doc/manual/advanced_config.body
A gui/CMakeLists.txt
M gui/us_abstractrotor_gui.cpp
M gui/us_analysis_base2.cpp
M gui/us_buffer_gui.cpp
M gui/us_data_loader.cpp
M gui/us_failed_gmp_run_gui.cpp
M gui/us_load_auc.cpp
M gui/us_loadable_noise.cpp
R gui/us_model_editor.cpp
R gui/us_model_editor.h
M gui/us_model_gui.cpp
M gui/us_model_gui.h
M gui/us_model_loader.cpp
M gui/us_model_loader.h
M gui/us_noise_loader.cpp
M gui/us_noise_loader.h
M gui/us_project_gui.cpp
M gui/us_report_gui.cpp
M gui/us_rotor_gui.cpp
M gui/us_scan_excl_gui.cpp
M gui/us_scan_excl_gui.h
M gui/us_solution_gui.cpp
M gui/us_widgets.cpp
M gui/us_widgets_dialog.cpp
A programs/CMakeLists.txt
M programs/us/us.cpp
M programs/us/us_win_data.cpp
M programs/us_2dsa/us_2dsa.cpp
M programs/us_analysis_profile/us_analysis_profile.cpp
M programs/us_analysis_profile/us_analysis_profile.h
M programs/us_analysis_profile/us_anapro_utils.cpp
M programs/us_astfem_sim/us_astfem_sim.cpp
M programs/us_astfem_sim/us_astfem_sim.h
A programs/us_autoflow_analysis/CMakeLists.txt
M programs/us_autoflow_analysis/us_autoflow_analysis.cpp
A programs/us_com_project/CMakeLists.txt
M programs/us_com_project/us_com_project_gui.cpp
M programs/us_com_project/us_com_project_gui.h
A programs/us_com_project_academic/CMakeLists.txt
M programs/us_config/us_database.cpp
M programs/us_config/us_xpnhost_db.cpp
M programs/us_config/us_xpnhost_db.h
M programs/us_convert/us_convert_gui.cpp
M programs/us_convert/us_select_triples.h
M programs/us_ddist_combine/us_ddist_combine.cpp
M programs/us_ddist_combine/us_ddist_combine.h
M programs/us_edit/us_edit.cpp
M programs/us_edit/us_edit.h
A programs/us_experiment/CMakeLists.txt
M programs/us_experiment/us_exp_utils.cpp
M programs/us_experiment/us_experiment_gui_optima.cpp
M programs/us_experiment/us_experiment_gui_optima.h
M programs/us_experiment/us_proto_ranges.cpp
A programs/us_fematch/CMakeLists.txt
M programs/us_fematch/us_fematch.cpp
M programs/us_fematch/us_resplot_fem.cpp
A programs/us_fit_meniscus/CMakeLists.txt
M programs/us_fit_meniscus/us_fit_meniscus.cpp
M programs/us_fit_meniscus/us_fit_meniscus_main.cpp
M programs/us_ga_init/us_solutedata.cpp
M programs/us_grid_editor/us_grid_editor.cpp
M programs/us_grid_editor/us_grid_editor.h
M programs/us_integral/us_integral.cpp
M programs/us_mpi_analysis/us_mpi_analysis.cpp
A programs/us_mwl_species_fit/CMakeLists.txt
M programs/us_pcsa/us_adv_analysis_pc.cpp
M programs/us_pcsa/us_analysis_control_pc.cpp
M programs/us_pcsa/us_mrecs_loader.cpp
M programs/us_pcsa/us_mrecs_loader.h
M programs/us_pcsa/us_pcsa.cpp
M programs/us_pcsa/us_pcsa_process.cpp
A programs/us_protocol_dev/CMakeLists.txt
A programs/us_query_rmsd/CMakeLists.txt
M programs/us_ramp/us_experiment_gui_ra.cpp
M programs/us_ramp/us_experiment_ra.cpp
M programs/us_ramp/us_experiment_ra.h
M programs/us_ramp/us_get_dbrun_ra.cpp
M programs/us_ramp/us_ramp_gui.cpp
A programs/us_reporter_gmp/CMakeLists.txt
M programs/us_reporter_gmp/us_reporter_gmp.cpp
M programs/us_reporter_gmp/us_reporter_gmp.h
M programs/us_vhw_enhanced/us_vhw_enhanced.cpp
M programs/us_xpn_viewer/us_xpn_run_raw.cpp
M programs/us_xpn_viewer/us_xpn_viewer_gui.cpp
A qwtplot3d/CMakeLists.txt
A test-docker.sh
A test/README
A test/common/qt_test_base.cpp
A test/common/qt_test_base.h
M test/utils/CMakeLists.txt
A test/utils/mock/mock_us_db2.h
A test/utils/test_mock_us_db2.cpp
A test/utils/test_us_ana_profile.cpp
A test/utils/test_us_analyte.cpp
A test/utils/test_us_astfem_math.cpp
A test/utils/test_us_buffer.cpp
A test/utils/test_us_crc.cpp
A test/utils/test_us_crypto.cpp
A test/utils/test_us_dataIO.cpp
M test/utils/test_us_datafiles.cpp
R test/utils/test_us_datafiles.h
A test/utils/test_us_db2.cpp
A test/utils/test_us_math2.cpp
A test/utils/test_us_matrix.cpp
A test/utils/test_us_memory.cpp
A test/utils/test_us_model.cpp
A test/utils/test_us_project.cpp
A test/utils/test_us_settings.cpp
R test/utils/test_us_simparams.cpp
R test/utils/test_us_simparams.h
A test/utils/test_us_simparms.cpp
A test/utils/test_us_stiffbase.cpp
A test/utils/test_us_time_state.cpp
A test/utils/test_us_timer.cpp
M test/utils/test_us_util.cpp
R test/utils/test_us_util.h
M test/utils/test_us_utils_main.cpp
A test/utils/test_us_vector.cpp
M us_somo/develop/include/us3_defines.h
A us_somo/develop/include/us_band_broaden.h
M us_somo/develop/include/us_hydrodyn.h
M us_somo/develop/include/us_hydrodyn_cluster_best.h
M us_somo/develop/include/us_hydrodyn_dad.h
M us_somo/develop/include/us_hydrodyn_hydro.h
M us_somo/develop/include/us_hydrodyn_hydro_zeno.h
M us_somo/develop/include/us_hydrodyn_mals.h
M us_somo/develop/include/us_hydrodyn_saxs.h
M us_somo/develop/include/us_hydrodyn_saxs_buffer.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc_ciq.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc_fit.h
M us_somo/develop/include/us_hydrodyn_saxs_hplc_movie.h
M us_somo/develop/include/us_json.h
M us_somo/develop/include/us_matrix.h
M us_somo/develop/include/us_multi_column.h
M us_somo/develop/include/us_pfortran.h
M us_somo/develop/include/us_saxs_util.h
M us_somo/develop/include/us_tar.h
M us_somo/develop/include/us_tnt_jama.h
M us_somo/develop/include/us_unicode.h
M us_somo/develop/include/us_zeno_cxx.h
M us_somo/develop/include/us_zeno_cxx_nf.h
M us_somo/develop/libus_somo.pro
M us_somo/develop/src/qwt/scrollzoomer.cpp
M us_somo/develop/src/us3i_color.cpp
M us_somo/develop/src/us3i_util.cpp
A us_somo/develop/src/us_band_broaden.cpp
M us_somo/develop/src/us_color.cpp
M us_somo/develop/src/us_config_gui.cpp
M us_somo/develop/src/us_dirhist.cpp
M us_somo/develop/src/us_ffd.cpp
M us_somo/develop/src/us_font.cpp
M us_somo/develop/src/us_fractal_dimension.cpp
M us_somo/develop/src/us_help.cpp
M us_somo/develop/src/us_hydrodyn.cpp
M us_somo/develop/src/us_hydrodyn_addatom.cpp
M us_somo/develop/src/us_hydrodyn_addhybrid.cpp
M us_somo/develop/src/us_hydrodyn_addresidue.cpp
M us_somo/develop/src/us_hydrodyn_addsaxs.cpp
M us_somo/develop/src/us_hydrodyn_batch.cpp
M us_somo/develop/src/us_hydrodyn_bd_core.cpp
M us_somo/develop/src/us_hydrodyn_bd_load_results_opts.cpp
M us_somo/develop/src/us_hydrodyn_bd_options.cpp
M us_somo/develop/src/us_hydrodyn_beads.cpp
M us_somo/develop/src/us_hydrodyn_beads_load.cpp
M us_somo/develop/src/us_hydrodyn_cluster.cpp
M us_somo/develop/src/us_hydrodyn_cluster_advanced.cpp
M us_somo/develop/src/us_hydrodyn_cluster_best.cpp
M us_somo/develop/src/us_hydrodyn_cluster_results.cpp
M us_somo/develop/src/us_hydrodyn_cluster_status.cpp
M us_somo/develop/src/us_hydrodyn_cluster_submit.cpp
M us_somo/develop/src/us_hydrodyn_core.cpp
M us_somo/develop/src/us_hydrodyn_dad.cpp
M us_somo/develop/src/us_hydrodyn_dad_gg.cpp
M us_somo/develop/src/us_hydrodyn_dad_gui.cpp
M us_somo/develop/src/us_hydrodyn_dad_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_bb.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_guinier.cpp
M us_somo/develop/src/us_hydrodyn_dad_modes_powerfit.cpp
M us_somo/develop/src/us_hydrodyn_dad_movie.cpp
M us_somo/develop/src/us_hydrodyn_dad_options.cpp
M us_somo/develop/src/us_hydrodyn_dad_parameters.cpp
M us_somo/develop/src/us_hydrodyn_dad_plots.cpp
M us_somo/develop/src/us_hydrodyn_dad_svd.cpp
M us_somo/develop/src/us_hydrodyn_dad_util.cpp
M us_somo/develop/src/us_hydrodyn_dammin_opts.cpp
M us_somo/develop/src/us_hydrodyn_fractal_dimension.cpp
M us_somo/develop/src/us_hydrodyn_grid_atob.cpp
M us_somo/develop/src/us_hydrodyn_grpy.cpp
M us_somo/develop/src/us_hydrodyn_hydrate.cpp
M us_somo/develop/src/us_hydrodyn_hydrate_align.cpp
M us_somo/develop/src/us_hydrodyn_hydro.cpp
M us_somo/develop/src/us_hydrodyn_hydro_zeno.cpp
M us_somo/develop/src/us_hydrodyn_info.cpp
M us_somo/develop/src/us_hydrodyn_load.cpp
M us_somo/develop/src/us_hydrodyn_mals.cpp
M us_somo/develop/src/us_hydrodyn_mals_gg.cpp
M us_somo/develop/src/us_hydrodyn_mals_gui.cpp
M us_somo/develop/src/us_hydrodyn_mals_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_mals_modes_bb.cpp
M us_somo/develop/src/us_hydrodyn_mals_modes_guinier.cpp
M us_somo/develop/src/us_hydrodyn_mals_movie.cpp
M us_somo/develop/src/us_hydrodyn_mals_options.cpp
M us_somo/develop/src/us_hydrodyn_mals_plots.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_gg.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_gui.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_bb.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_guinier.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_modes_scale.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_movie.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_options.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_plots.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_svd.cpp
M us_somo/develop/src/us_hydrodyn_mals_saxs_util.cpp
M us_somo/develop/src/us_hydrodyn_mals_svd.cpp
M us_somo/develop/src/us_hydrodyn_mals_util.cpp
M us_somo/develop/src/us_hydrodyn_misc.cpp
M us_somo/develop/src/us_hydrodyn_other.cpp
M us_somo/develop/src/us_hydrodyn_pat.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool_merge.cpp
M us_somo/develop/src/us_hydrodyn_pdb_tool_util.cpp
M us_somo/develop/src/us_hydrodyn_results.cpp
M us_somo/develop/src/us_hydrodyn_save.cpp
M us_somo/develop/src/us_hydrodyn_saxs.cpp
M us_somo/develop/src/us_hydrodyn_saxs_1d.cpp
M us_somo/develop/src/us_hydrodyn_saxs_2d.cpp
M us_somo/develop/src/us_hydrodyn_saxs_buffer.cpp
A us_somo/develop/src/us_hydrodyn_saxs_buffer_fit.cpp
A us_somo/develop/src/us_hydrodyn_saxs_buffer_gui.cpp
M us_somo/develop/src/us_hydrodyn_saxs_cormap.cpp
M us_somo/develop/src/us_hydrodyn_saxs_guinier.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_ciq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_fit.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_gg.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_gui.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_makeiq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_bb.cpp
A us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_broaden.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_modes_wheel.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_movie.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_options.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_plots.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_svd.cpp
M us_somo/develop/src/us_hydrodyn_saxs_hplc_util.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_bead_model.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_residuals.cpp
M us_somo/develop/src/us_hydrodyn_saxs_iqq_sh.cpp
M us_somo/develop/src/us_hydrodyn_saxs_loads.cpp
M us_somo/develop/src/us_hydrodyn_saxs_mw.cpp
M us_somo/develop/src/us_hydrodyn_saxs_plots.cpp
M us_somo/develop/src/us_hydrodyn_saxs_pr.cpp
M us_somo/develop/src/us_hydrodyn_saxs_screen.cpp
M us_somo/develop/src/us_hydrodyn_script.cpp
M us_somo/develop/src/us_hydrodyn_settings.cpp
M us_somo/develop/src/us_hydrodyn_supc.cpp
M us_somo/develop/src/us_hydrodyn_util.cpp
M us_somo/develop/src/us_hydrodyn_write.cpp
M us_somo/develop/src/us_hydrodyn_zeno.cpp
M us_somo/develop/src/us_imgviewer.cpp
M us_somo/develop/src/us_json.cpp
M us_somo/develop/src/us_matrix.cpp
M us_somo/develop/src/us_plot_util.cpp
M us_somo/develop/src/us_plot_zoom.cpp
M us_somo/develop/src/us_pm_fitness.cpp
M us_somo/develop/src/us_register.cpp
M us_somo/develop/src/us_saxs_util.cpp
M us_somo/develop/src/us_saxs_util_best.cpp
M us_somo/develop/src/us_saxs_util_guinier.cpp
M us_somo/develop/src/us_saxs_util_hydrate.cpp
M us_somo/develop/src/us_saxs_util_hydrate_align.cpp
M us_somo/develop/src/us_saxs_util_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_grid_atob_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_pat_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_supc_hydro.cpp
M us_somo/develop/src/us_saxs_util_hydro_zeno_hydro.cpp
M us_somo/develop/src/us_saxs_util_iqq.cpp
M us_somo/develop/src/us_saxs_util_iqq_1d.cpp
M us_somo/develop/src/us_saxs_util_iqq_bead_model.cpp
M us_somo/develop/src/us_saxs_util_iqq_pdb.cpp
M us_somo/develop/src/us_saxs_util_loads.cpp
M us_somo/develop/src/us_saxs_util_pat.cpp
M us_somo/develop/src/us_saxs_util_pm.cpp
M us_somo/develop/src/us_saxs_util_static.cpp
M us_somo/develop/src/us_tar.cpp
M us_somo/develop/src/us_util.cpp
M us_somo/develop/src/us_zeno_cxx.cpp
M us_somo/somo/doc/manual/somo/somo-Zeno_optionsNew.png
M us_somo/somo/doc/manual/somo/somo-main0new.png
M us_somo/somo/doc/manual/somo/somo-main4.png
M us_somo/somo/doc/manual/somo/somo.html
A us_somo/somo/doc/manual/somo/somo_ZENO_correction_warning.png
M us_somo/somo/doc/manual/somo/somo_cluster_config.html
M us_somo/somo/doc/manual/somo/somo_hydro_zeno.html
M utils/CMakeLists.txt
A utils/ius_db2.h
M utils/us_ana_profile.cpp
M utils/us_ana_profile.h
M utils/us_analyte.cpp
M utils/us_analyte.h
M utils/us_astfem_math.cpp
M utils/us_astfem_math.h
M utils/us_astfem_rsa.cpp
M utils/us_buffer.cpp
M utils/us_buffer.h
M utils/us_cfa_data.cpp
M utils/us_dataIO.cpp
M utils/us_dataIO.h
M utils/us_db2.cpp
M utils/us_db2.h
M utils/us_eprofile.cpp
M utils/us_eprofile.h
M utils/us_hardware.cpp
M utils/us_hardware.h
M utils/us_lamm_astfvm.cpp
M utils/us_model.cpp
M utils/us_model.h
M utils/us_noise.cpp
M utils/us_noise.h
M utils/us_project.cpp
M utils/us_project.h
M utils/us_report.cpp
M utils/us_report.h
M utils/us_rotor.cpp
M utils/us_rotor.h
M utils/us_run_protocol.h
M utils/us_simparms.cpp
M utils/us_simparms.h
M utils/us_solution.cpp
M utils/us_solution.h
M utils/us_solution_vals.cpp
M utils/us_solution_vals.h
M utils/us_solve_sim.cpp
M utils/us_solve_sim.h
M utils/us_time_state.cpp
M utils/us_time_state.h
Log Message:
-----------
merge master into ehb54-issue-553, conflicts manually resolved
Compare: https://github.com/ehb54/ultrascan3/compare/3fd01182e1ee...ecfbe0af9e3b
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